RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16352
(905 letters)
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 416 bits (1069), Expect = e-136
Identities = 222/466 (47%), Positives = 291/466 (62%), Gaps = 41/466 (8%)
Query: 356 REKSLLHVLGILKARDSFDDWRWKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGC 415
E+S++ L L D DWR KE+ DL++LVQRR+ YLQNP DC A+KLVC +NKGC
Sbjct: 97 HERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGC 156
Query: 416 GYGCQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWP 475
GYGCQLHHVVYCF++AY T+RTLIL+S+ W Y+ GGWE VF+PVS+TCT G+S W
Sbjct: 157 GYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWS 216
Query: 476 G---NNDTQVIYLPIIEFINPRPPYLPLAIPEDLEPRLSRLHGDPIVWWIGQFLTFLNNP 532
G + + QV+ LPI++ ++PRPPYLPLA+PEDL RL R+HGDP VWW+ QF+ +L P
Sbjct: 217 GEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRP 276
Query: 533 TPNTREIVAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQT 592
P + + + +K+ F+ P++G+H+RRTDKV TEAA HP+EEYM VEE+++ LA
Sbjct: 277 QPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQ 336
Query: 593 VDVKRVYVATDDASVLTEIREKYPQYSVLGDPSIARTASLEHRYLKSSLLGIITDLHYLS 652
VD KRVY+ATDD S+L E + KYP Y + D SI+ +A L +RY ++SL G+I D+H+LS
Sbjct: 337 VDKKRVYLATDDPSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLS 396
Query: 653 NCDHLVCTFSSQICRTAYEQMNAKFPDASDRYRSLDDIYYFGVPTATIWCICRTAYEQMN 712
D LVCTFSSQ +CR AYE M
Sbjct: 397 QADFLVCTFSSQ--------------------------------------VCRVAYEIMQ 418
Query: 713 AKFPDASDRYRSLDDIYYFGGQLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYS 772
PDAS + SLDDIYYFGGQ + IA+ H PR + E+ + GD I VAGNHW+GYS
Sbjct: 419 TLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYS 478
Query: 773 KGRNLRTDQLALYPTFKTSADSFPAFAYIFRRIHIAVLPHTPRHSS 818
KG N + + LYP++K + A H H
Sbjct: 479 KGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAEKAGGGHHHHHHG 524
Score = 344 bits (883), Expect = e-108
Identities = 163/337 (48%), Positives = 228/337 (67%), Gaps = 6/337 (1%)
Query: 25 SSELTQFRTELVNKTPQLAGGPNIQYELARKRVSKDVQELWYYVSSELTQFRTELVNKTP 84
+L + + ++ N Q G +E+ R+R+ +ELW+++ SEL + + +
Sbjct: 25 EEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIENGAKELWFFLQSELKKLKN---LEGN 81
Query: 85 QLAGKLDRIIAETAEHKRSLLHVLDTLKARDSFDDWRWKESLDLSDLVQRRLEYLQNPPD 144
+L D + + H+RS++ L L D DWR KE+ DL++LVQRR+ YLQNP D
Sbjct: 82 ELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKD 141
Query: 145 CRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATQRTLILDSKEWSYSRGGWEEVFQPVS 204
C A+KLVC +NKGCGYGCQLHHVVYCF++AY TQRTLIL+S+ W Y+ GGWE VF+PVS
Sbjct: 142 CSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVS 201
Query: 205 KTCTSPEGVSNSSWPG---NNDTQVIYLPIIEFINPRPPYLPLAIPEDLEPRLSRLHGDP 261
+TCT G+S W G + + QV+ LPI++ ++PRPPYLPLA+PEDL RL R+HGDP
Sbjct: 202 ETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDP 261
Query: 262 IVWWIGQFLMFLNNPTPNTREIVAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYM 321
VWW+ QF+ +L P P + + + +K+ F+ P++G+H+RRTDKV TEAA HP+EEYM
Sbjct: 262 AVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYM 321
Query: 322 TGVEEYYKQLALTQTVDVKRVYVATDDASVLTEIREK 358
VEE+++ LA VD KRVY+ATDD S+L E + K
Sbjct: 322 VHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTK 358
Score = 87.6 bits (216), Expect = 4e-18
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 798 FAYIFRRIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKS 857
F IA+ H PR + E+ + GD I VAGNHW+GYSKG N + + LYP++K
Sbjct: 437 FGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKV 496
Query: 858 VPHVETARFPTYPEVPSR 875
+ET ++PTYPE
Sbjct: 497 REKIETVKYPTYPEAEKA 514
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
3six_A*
Length = 330
Score = 193 bits (492), Expect = 2e-55
Identities = 52/322 (16%), Positives = 99/322 (30%), Gaps = 31/322 (9%)
Query: 402 RTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWE----EVFQ 457
R ++ + G+G L + + A T RTL++D + Y + F+
Sbjct: 2 TKERFVIS--RRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFE 59
Query: 458 PVSKTCTSP----EGVSNSGWPG--------NNDTQVIYLPIIEFINPRPPYLPLAIPED 505
PV P + V+ +PG I P + R L +
Sbjct: 60 PVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQARE 119
Query: 506 LEPRLSRLHGDPIVWWIGQFLTFLNN----PTPNTREIVAKYGEKIKFQKPIVGIHIRRT 561
+ + ++W + L R + E+ I+G+H+R
Sbjct: 120 DSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHG 179
Query: 562 DKVD---TEAALHPVEEYMTGVEEYYKQLALTQTVDVKRVYVATDDASVLTEIREKYPQY 618
+ D E + V ++ +V++ TD A VL ++ +P
Sbjct: 180 NGEDIMEHAPYWADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPDV 239
Query: 619 SVLGDPSIARTASLEHRYLKSSLLG--IITDLHYLSNCDHLV-CTFSSQICRTAYEQMNA 675
+ A A H G + D++ L+ C ++ +S R A +
Sbjct: 240 FAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPTSAFTRYARLLVPR 299
Query: 676 KFP---DASDRYRSLDDIYYFG 694
+D+ Y
Sbjct: 300 IIEFDLSNPGHLTMIDNPYEHF 321
Score = 161 bits (409), Expect = 5e-44
Identities = 40/236 (16%), Positives = 75/236 (31%), Gaps = 25/236 (10%)
Query: 146 RTARKLVCELNKGCGYGCQLHHVVYCFIVAYATQRTLILDSKEWSYSRGGWE----EVFQ 201
R ++ + G+G L + + A T RTL++D + Y + F+
Sbjct: 2 TKERFVIS--RRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFE 59
Query: 202 PVSKTCTSP----EGVSNSSWPG--------NNDTQVIYLPIIEFINPRPPYLPLAIPED 249
PV P + V+ S+PG I P + R L +
Sbjct: 60 PVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQARE 119
Query: 250 LEPRLSRLHGDPIVWWIGQFLMFLNN----PTPNTREIVAKYGEKIKFQKPIVGIHIRRT 305
+ + ++W + L R + E+ I+G+H+R
Sbjct: 120 DSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHG 179
Query: 306 DKVD---TEAALHPVEEYMTGVEEYYKQLALTQTVDVKRVYVATDDASVLTEIREK 358
+ D E + V ++ +V++ TD A VL ++
Sbjct: 180 NGEDIMEHAPYWADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGL 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 6e-13
Identities = 94/690 (13%), Positives = 212/690 (30%), Gaps = 208/690 (30%)
Query: 96 ETAEHK---RSLLHVLDTLKARDSF-DDWRWKESLDLSDLVQRRLEY---LQNPPDCRTA 148
ET EH+ + +L V D+F D++ K+ D+ + + E + +
Sbjct: 10 ETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 149 RKLV-CELNKGCGYGCQLHHVVYCFIVAYATQRTLILDSKEWSYSRGGWEEVFQPVSKTC 207
+L L+K +V F+ + +Y + + P+
Sbjct: 65 LRLFWTLLSKQ-------EEMVQKFVE----------EVLRINY---KF--LMSPIKTEQ 102
Query: 208 TSPEGVS-------NSSWPGNNDTQVIYLPIIEFINPRPPYLPLAIPEDLEPRLSR---- 256
P ++ + + ND Q ++ R L + + L L
Sbjct: 103 RQPSMMTRMYIEQRDRLY---NDNQ----VFAKYNVSRLQPY-LKLRQALL-ELRPAKNV 153
Query: 257 -LHGDPIVWWIG---QFLMFLNNPTPNTREIVAKYGEKIKFQKPIVGIHIRRTDKVDTEA 312
+ G G ++ ++ Y + K I ++++ + E
Sbjct: 154 LIDGVL-----GSGKTWV---------ALDVCLSYKVQCKMDFKIFWLNLKNCNS--PET 197
Query: 313 ALHPVEEYMTGVEEYYKQLALTQTVDVKRVYVATDDASVLTEIREKSLLHVLGILKARDS 372
L +++ + ++ + + + R++ + L ++ K + L +L +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVL--LNV 253
Query: 373 FDDWRWKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAY 432
+ W + +LS C+ L+ K V ++
Sbjct: 254 QNAKAWN-AFNLS---------------CKI---LLTTRFKQ---------VT--DFLSA 283
Query: 433 ATRRTLILDSKEWSYSRGGWEEVFQ----------PVSKTCTSPEGVS------------ 470
AT + LD + + + + P T+P +S
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 471 NSGWPGNND---TQVIYLPIIEFINP---RPPYLPLAI-PEDL---EPRLSRLHGDPIVW 520
W N T +I + + P R + L++ P LS + D I
Sbjct: 344 WDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 521 WIGQFLTFLNNPTPNTREIVAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHP--VEEY-- 576
+ + L+ +V K ++ I I++ K++ E ALH V+ Y
Sbjct: 403 DVMVVVNKLHK-----YSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 577 ----------MTGVEEYY--------KQLALTQTVDV-KRVYV----------------- 600
+++Y+ K + + + + + V++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 601 -ATDDASVLTEIREKYPQYSVLGDPSIARTASLEHRYLKSSLLGIITDLHYLSNCD-HLV 658
+ + L +++ Y Y DP R + + L +L + +L+
Sbjct: 516 ASGSILNTLQQLK-FYKPYICDNDPKY-------ERLVNAI-------LDFLPKIEENLI 560
Query: 659 CTFSSQICRTAYEQMNAKFPDASDRYRSLD 688
C+ + + R A M + ++ +
Sbjct: 561 CSKYTDLLRIAL--MAEDEAIFEEAHKQVQ 588
Score = 69.9 bits (170), Expect = 3e-12
Identities = 81/521 (15%), Positives = 149/521 (28%), Gaps = 144/521 (27%)
Query: 1 GPNIQYELARKRVSKDVQELW-YYVSSE--LTQFRTELVNKTPQ---------------L 42
Y R R+ D Q Y VS + R L+ P +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 43 AG------------GPNIQY-ELARKRVSKDV----QELWYYVSSELTQFRTELVNKTPQ 85
A I + L + V Q+L Y + T R++ +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKL 225
Query: 86 ----LAGKLDRIIAETAEHKRSLLHVLDTLKARDSFDDWRWKESLDLSDLVQRRLEYLQN 141
+ +L R++ ++ LL VL + + W + +LS
Sbjct: 226 RIHSIQAELRRLLKS-KPYENCLL-VLL-----NVQNAKAWN-AFNLS------------ 265
Query: 142 PPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATQRTLILDSKEWSYSRGGWEEVFQ 201
C+ L+ K V F+ A T + LD + + + +
Sbjct: 266 ---CKI---LLTTRFKQ----------VTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLL 308
Query: 202 ----------PVSKTCTSPEGVS---------NSSWPG----NND--TQVIYLPIIEFIN 236
P T+P +S ++W N D T +I + +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLE 367
Query: 237 P---RPPYLPLAI-PEDL---EPRLSRLHGDPIVWWIGQFLMFLNNPTPNTREIVAKYGE 289
P R + L++ P LS + W+ + + +V K +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLI------WF--------DVIKSDVMVVVNKLHK 413
Query: 290 K---IKFQKP----IVGIHIRRTDKVDTEAALHP--VEEYMTGVEEYYKQLALTQTVDVK 340
K K I I++ K++ E ALH V+ Y + + + L +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQ 471
Query: 341 RVY------VATDDASVLTEIREKSLLHVLGILKARDSFDDWRWKESLDLSDLVQRRLEY 394
Y + + + L L+ + D W S + + +Q+ Y
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 395 LQN-PPDCRTARKLVCELNKGC-GYGCQLHHVVYCFIVAYA 433
+ +LV + L Y ++ A
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 42.5 bits (99), Expect = 7e-04
Identities = 45/349 (12%), Positives = 100/349 (28%), Gaps = 107/349 (30%)
Query: 520 WWIGQFLTFLNNPTPNTREIVAK----YGEKIKFQKPIVGIHIRRTDKVDT-EAALHPVE 574
+ + T P+ TR + + Y + F K ++ R AL
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQAL---- 144
Query: 575 EYMTGVEEYYKQLALTQTVDV-------KRVYVATDDASVLTEIREKYPQYSVLGDPSIA 627
+L + V + K + + V +
Sbjct: 145 ----------LELRPAKNVLIDGVLGSGK---------TWVAL--------DVCLSYKVQ 177
Query: 628 RT-------ASLEHRYLKSSLLGIITDLHYLSNCDHLVCTFSSQICRTAYEQMNAKFPD- 679
+L++ ++L ++ L Y + + + S + + A+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 680 -ASDRYRS----LDDIY------YFGVPTATIWCICR----TAYEQMNAKFPDASDRYRS 724
S Y + L ++ F + C+ T ++Q+ A+ + S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLS-------CKILLTTRFKQVTDFLSAATTTHIS 290
Query: 725 LDDIYY-FG-----GQLSR-IHIAV--LPHTPRHSSEMAL-LVGDRISVAGNHWNGYSKG 774
LD L + + LP ++ L ++ + I W+ +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--- 347
Query: 775 RNLRTDQL---------ALYPT-FKTSADSFPAFAYIFR---RIHIAVL 810
+++ D+L L P ++ F + +F I +L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLS-VFPPSAHIPTILL 392
Score = 30.2 bits (67), Expect = 3.7
Identities = 47/358 (13%), Positives = 98/358 (27%), Gaps = 108/358 (30%)
Query: 573 VEEYMTGVEEY-YKQLA------LTQTVDVKRVYVATDDASVLTEIREKYPQYSVLGDPS 625
V++++ V YK L Q + R+Y+ D L + + +Y+V
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNV----- 131
Query: 626 IARTASLEHRYLKSSLL------GIITDLHYLSNCDHLVCTFSSQICRTAYEQMNAKFPD 679
+R + L+ +LL ++ + + +C + ++ K
Sbjct: 132 -SRLQ--PYLKLRQALLELRPAKNVL--IDGVLGSGKTWVA--LDVCLS--YKVQCKMDF 182
Query: 680 ASDRYRSLDDIYYFGV-----PTATI---WCICRTAYEQMNAKFPDASDRYR-SLDDIYY 730
I++ + P + + + D S + + I
Sbjct: 183 K---------IFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQA 232
Query: 731 FGGQLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKT 790
+L R+ + P+ LLV + N
Sbjct: 233 ---ELRRL-LKSKPY-EN-----CLLVLLNV------QN--------------------- 255
Query: 791 SADSFPAFAYIFR-RIHIAVLPHTPRHSSEMDLMVGDRIS--VAGNHWNGYSKGRNLRTD 847
A ++ AF +I + T R D + + +H +
Sbjct: 256 -AKAWNAFN--LSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--S 305
Query: 848 QLALY--PTFKSVPHVETARFP--------TYPEVPSRWPNVKKAAFRQKSTKFGMDL 895
L Y + +P P + + + W N K + +T L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 1e-09
Identities = 90/506 (17%), Positives = 153/506 (30%), Gaps = 173/506 (34%)
Query: 489 EFINPRP-PYLPLAIPEDLEPRLSRLHGDPIVWWIGQFLTFLNNPTPNTREIVAKYGEKI 547
+F P P A D EP + +G+FL ++++ ++ V ++ + +
Sbjct: 36 QFNKILPEPTEGFA--ADDEPT-TPAE------LVGKFLGYVSSLVEPSK--VGQFDQVL 84
Query: 548 K-----FQKPIVG---IH-IRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQTVDVKRV 598
F+ + IH + + + L +E ++ Y + + K+
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL---IKNYITARIMAKRPFDKKS 141
Query: 599 Y------VATDDASV-------------LTEIREKYPQYSVLGDPSIARTAS-------- 631
V +A + E+R+ Y Y VL I +A
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 632 -----------------LEHR-------YLKSS-----LLGIITDLHYLSNCDHLVCT-- 660
LE+ YL S L+G+I HY+ L T
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 661 -FSSQIC-RTAYEQ--MNAKFPDASDRYRSLDDIYYFGVPTATIWCICRTAYEQMNAKFP 716
S + T + Q + A +D + S + T + R YE +P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVR-CYEA----YP 315
Query: 717 DASDRYRSLDDIYYFG-GQ---------LSRIHI-----AVLPHTPRHSS-EMALLVGDR 760
+ S L+D G L++ + H P E++L+ G +
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 761 -ISVAGNHWNGYSKGRNLRTDQLALYPTFKTSADS--------F----PAFAYIFRRIHI 807
+ V+G + Y LR K A S F F+ F
Sbjct: 376 NLVVSGPPQSLYGLNLTLR----------KAKAPSGLDQSRIPFSERKLKFSNRF----- 420
Query: 808 AVLPHT-PRHSSEM----DLMVGDRISVAGNH--WNG-------YS--KGRNLRT----- 846
LP P HS + DL+ D + N+ +N Y G +LR
Sbjct: 421 --LPVASPFHSHLLVPASDLINKD---LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 847 -----DQLALYP------TFKSVPHV 861
D + P T H+
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHI 501
Score = 46.6 bits (110), Expect = 4e-05
Identities = 90/593 (15%), Positives = 155/593 (26%), Gaps = 226/593 (38%)
Query: 103 SLLHVLDTLKARDSF-------------DDWRWKESLDLSDLVQRRLEYL-------QNP 142
+ + L ++ F DD E ++LV + L Y+ +
Sbjct: 25 ASFFIASQL--QEQFNKILPEPTEGFAADD----EPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 143 PDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATQRTLILDSKEW--SYSRGGWEEVF 200
+ + E G +H + + T ++ +KE +Y
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLL---QENDTTLVKTKELIKNYITAR-IMAK 134
Query: 201 QPVSKTCTSP--EGVSNSSWP--------GNNDT-----QVI---YLPIIE-FINPRPPY 241
+P K S V + GN D + + Y ++ I
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 242 L-PLA-IPEDLEPRLSRLHGDPIVWWIGQFLMFLNNPTPNTREIVAKYGEKIKFQKPIVG 299
L L D E + G I+ W L NP+
Sbjct: 195 LSELIRTTLDAEKVFT--QGLNILEW-------LENPSN--------------------- 224
Query: 300 IHIRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQTVDVKRVYVATDDASVLT--EIRE 357
P ++Y+ + + + Q YV T T E+R
Sbjct: 225 ---------------TPDKDYLLSIPISCPLIGVIQLAH----YVVTAKLLGFTPGELRS 265
Query: 358 K---SLLHVLGILKAR--DSFDDWRWKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELN 412
+ H G++ A D W ES V++ + L
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSW---ESFF--VSVRKAITVL----------------- 303
Query: 413 KGCGYGCQLHHVVYCFIVAY---ATRRTLILDSKEW-----SY-------SRGGWEEVFQ 457
G C AY + +++ DS E S ++ E+V
Sbjct: 304 FFIGVRCYE---------AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ---EQVQD 351
Query: 458 PVSKTCTSPEGVSNSGWPGNNDTQVIYLPIIEFIN-PR------PPYLPLAIPEDLEPRL 510
V+KT NS P + + I +N + P P+ L
Sbjct: 352 YVNKT--------NSHLPAG---KQVE---ISLVNGAKNLVVSGP-------PQSLYGLN 390
Query: 511 SRLHGDPIVWWIGQFLTFLNNPTPNTREIVAKYGE---KIKF-QKPIVGIHIRRTDKVDT 566
L R+ A G +I F ++ + + R V
Sbjct: 391 LTL-----------------------RKAKAPSGLDQSRIPFSERKLKFSN--RFLPVA- 424
Query: 567 EAALHPVEEYMTGVEEYYKQLALTQTVDVKR------VYVATDDASVLTEIRE 613
+ H + + + + V VY T D S L +
Sbjct: 425 -SPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSG 473
Score = 36.2 bits (83), Expect = 0.056
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 63/165 (38%)
Query: 271 MFLNNPTPNT--------REIVAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMT 322
+ +NNP T + I Y + F+ + G +T+K+ E H
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDG--KLKTEKIFKEINEHSTSYTFR 1720
Query: 323 GVEEYYKQLALTQ-------TVDVKRVYVATDDASVLTEIREKSLL--------HVLG-- 365
+ L+ TQ ++ + +++ K L+ H LG
Sbjct: 1721 SEKG---LLSATQFTQPALTLMEK----------AAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 366 --------ILKARDSFDDWRWKESLDLSDLVQRRLEYLQN--PPD 400
++ S + L ++V R +Q P D
Sbjct: 1768 AALASLADVM----SIE--------SLVEVVFYRGMTMQVAVPRD 1800
Score = 33.1 bits (75), Expect = 0.51
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 33/161 (20%)
Query: 673 MNAKFPDASDRYRSL--DDI-YYFGVPTATIWCICRTAYEQMNAKF----PDASDRYRSL 725
M+A S R +L + + VPTA + Q+ +F P+ ++ + +
Sbjct: 1 MDA----YSTRPLTLSHGSLEHVLLVPTA-SFF----IASQLQEQFNKILPEPTEGFAAD 51
Query: 726 DDIYYFGGQLSRIHIAV--LPHTPRHSSEMALLVGDRISVAGNHWN----GYSKGRNLRT 779
D+ + + L + VG V Y +G ++
Sbjct: 52 DE------PTTPAELVGKFLGYVSSLVEPSK--VGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 780 DQLALYPTFKTSADSFPAF--AYIFRRIHIAVLPHTPRHSS 818
L T+ Y +A P + +S
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNS 143
Score = 32.3 bits (73), Expect = 0.90
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 25/103 (24%)
Query: 717 DASDRYRSLDDIYYFGGQLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRN 776
+ +D + D Y F S + I V+ + P + + H+ G KG+
Sbjct: 1647 NRADNH--FKDTYGF----SILDI-VI-NNPV---NLTI-----------HFGGE-KGKR 1683
Query: 777 LRTDQLALYPTFKTSADSFPAFAYIFRRIHIAVLPHTPRHSSE 819
+R + A+ F+T D IF+ I+ +T R
Sbjct: 1684 IRENYSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 43.8 bits (104), Expect = 7e-06
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 732 GGQLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYP 786
G + + H A+ PRH E+ L V D + V + + + N+RT ++P
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFP 56
Score = 43.0 bits (102), Expect = 1e-05
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 806 HIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
H A+ PRH E++L V D + V + + + N+RT ++P
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFP 56
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 39.5 bits (93), Expect = 2e-04
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 806 HIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
H A+ PRH E++L V D + V + + + N+RT ++P
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFP 53
Score = 37.9 bits (89), Expect = 6e-04
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 736 SRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYP 786
+ H A+ PRH E+ L V D + V + + + N+RT ++P
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFP 53
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 40.5 bits (94), Expect = 0.002
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 527 TFLNNPTPNTREIV-AKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYK 585
T + P + + K P +G+H+RR D + P +E +
Sbjct: 240 TDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVP------SLEGAVR 293
Query: 586 QL-ALTQTVDVKRVYVATD-DASVLTEIREKYPQYSVLGDPSIARTASLEHRYLKSSLLG 643
++ +L +T + +V+VATD E+++ P+ E K +
Sbjct: 294 KIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPT------WEELELYKDGGVA 347
Query: 644 IITDLHYLSNCDHLVC----TFSSQICR 667
II D ++ + TFS +I
Sbjct: 348 II-DQWICAHARFFIGTSVSTFSFRIHE 374
Score = 30.8 bits (69), Expect = 2.4
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 285 AKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQL-ALTQTVDVKRVY 343
K P +G+H+RR D + P +E +++ +L +T + +V+
Sbjct: 255 MKVKLGSALGGPYLGVHLRRKDFIWGHRQDVP------SLEGAVRKIRSLMKTHRLDKVF 308
Query: 344 VATD 347
VATD
Sbjct: 309 VATD 312
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 34.0 bits (78), Expect = 0.031
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 804 RIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYS----KGRNLRTDQLALYP 853
+ P+TP++ E++L+ GD I ++ S G +L T L P
Sbjct: 17 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70
Score = 33.2 bits (76), Expect = 0.055
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 736 SRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYS----KGRNLRTDQLALYP 786
+ P+TP++ E+ L+ GD I ++ S G +L T L P
Sbjct: 16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 31.1 bits (71), Expect = 0.21
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 804 RIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
+ A+ + P++ E++L GDR+ V +G+ G + RT + +P
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFP 57
Score = 29.9 bits (68), Expect = 0.48
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 737 RIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYP 786
+ A+ + P++ E+ L GDR+ V +G+ G + RT + +P
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFP 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.39
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 775 RNLRTDQLALYPTFKTSADSFPAFA 799
+ L+ L LY + DS PA A
Sbjct: 23 KKLQA-SLKLY-----ADDSAPALA 41
Score = 28.8 bits (63), Expect = 4.4
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 22/50 (44%)
Query: 585 KQLALTQTVDVKRVYVATDDASVLTEIREKY-PQYSVLGDPSIARTASLE 633
KQ +K++ AS+ + Y + P++A A++E
Sbjct: 19 KQ-------ALKKL-----QASL-----KLYADDSA----PALAIKATME 47
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 29.7 bits (67), Expect = 0.50
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 732 GGQLSRIHIAVLPHTPRHSS-EMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYP 786
G + R A+LP+T + E++ L GD V +G+ NLRTD+ L
Sbjct: 1 GSHMRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIV 56
Score = 28.5 bits (64), Expect = 1.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 803 RRIHIAVLPHTPRHSS-EMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
RR A+LP+T + E+ + GD V +G+ NLRTD+ L
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIV 56
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.95
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 24/80 (30%)
Query: 325 EEYYKQLALTQTVDVKRVYVATDDASVLTEIREKSLLHVLGILKARDSFDDW--RWKESL 382
EE K+L + D AS ++ E+ KA+ ++W R E +
Sbjct: 92 EEQRKRLQ-------EL-----DAAS---KVMEQEW-----REKAKKDLEEWNQRQSEQV 131
Query: 383 DLSDLVQRRLE--YLQNPPD 400
+ + + R + + Q P
Sbjct: 132 EKNKINNRIADKAFYQQPDA 151
Score = 30.9 bits (69), Expect = 1.4
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 39/113 (34%)
Query: 36 VNKTPQLAGGPNIQYELARKRVSKDVQELWYYVSSELTQFRTELVNKTPQLAGKLDRIIA 95
+ + +L P E RK W R E + +L +LD A
Sbjct: 74 IAQADRLTQEP----ESIRK---------W----------REE---QRKRLQ-ELD---A 103
Query: 96 ETAEHKRSLLHVLDTLKARDSFDDW--RWKESLDLSDLVQRRLE--YLQNPPD 144
+ ++ KA+ ++W R E ++ + + R + + Q P
Sbjct: 104 ASKVMEQEWR-----EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 31.6 bits (72), Expect = 1.2
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 485 LPIIEFINP--RPPYLPLAIPEDLEPRLSRLHGDPIVWWIGQ---FLTFLNNPTPNTREI 539
PI+ FIN R + + +++E L +H P+ W IG F +
Sbjct: 135 TPIMTFINKMDRDTRPSIELLDEIESILR-IHCAPVTWPIGMGKYFKGIYHLIEDAIYLY 193
Query: 540 VAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVE-------EYYKQLALTQT 592
E++ + I GI+ DK + A E E Y + LT
Sbjct: 194 QPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPI 253
Query: 593 V 593
Sbjct: 254 F 254
Score = 31.2 bits (71), Expect = 1.7
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 229 LPIIEFINP--RPPYLPLAIPEDLEPRLSRLHGDPIVWWIGQ---FLMFLNNPTPNTREI 283
PI+ FIN R + + +++E L +H P+ W IG F +
Sbjct: 135 TPIMTFINKMDRDTRPSIELLDEIESILR-IHCAPVTWPIGMGKYFKGIYHLIEDAIYLY 193
Query: 284 VAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVE-------EYYKQLALTQT 336
E++ + I GI+ DK + A E E Y + LT
Sbjct: 194 QPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPI 253
Query: 337 V 337
Sbjct: 254 F 254
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 28.9 bits (65), Expect = 1.6
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 734 QLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYP 786
Q+S + A+ + R +++ G++ + + + + R+L T + P
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIP 55
Score = 26.9 bits (60), Expect = 6.6
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 805 IHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
+ A+ + R ++ G++ + + + + R+L T + P
Sbjct: 7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIP 55
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 31.2 bits (71), Expect = 1.9
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 229 LPIIEFINP--RPPYLPLAIPEDLEPRLSRLHGDPIVWWIGQ---FLMFLNNPTPNTREI 283
PI+ F+N R P+ + +++E L + PI W IG F + T
Sbjct: 135 TPILTFMNKLDRDIRDPMELLDEVENELK-IGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 284 VAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQTVDVKRVY 343
+ G I+ + + G++ D E + + + V+ + D +
Sbjct: 194 QSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEF------DKELF- 246
Query: 344 VATDDASVLTEIREKSLLHVLGILKARDSFDDW 376
A +T + + L G+ D +W
Sbjct: 247 ----LAGEITPVFFGTALGNFGVDHMLDGLVEW 275
Score = 30.4 bits (69), Expect = 2.8
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 485 LPIIEFINP--RPPYLPLAIPEDLEPRLSRLHGDPIVWWIGQ---FLTFLNNPTPNTREI 539
PI+ F+N R P+ + +++E L + PI W IG F + T
Sbjct: 135 TPILTFMNKLDRDIRDPMELLDEVENELK-IGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 540 VAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQL 587
+ G I+ + + G++ D E + + + V+ +
Sbjct: 194 QSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEF 241
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 28.0 bits (63), Expect = 2.3
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 803 RRIHIAVLPHT-PRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
R A+LP+T + E+ + GD V +G+ NLRTD+ L
Sbjct: 7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIV 58
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 27.9 bits (63), Expect = 2.3
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 804 RIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
+ +A+ ++ E+DL G+ I V G + +G+ KG +L T + ++P
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFP 57
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 30.5 bits (68), Expect = 2.4
Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 48/177 (27%)
Query: 520 WWIGQFLTFLNNPTPNTREIVAKYGEKIKFQKPIVGIHIRRTD----------------- 562
W I ++L + + E K+ KP V +H+R
Sbjct: 185 WSIQKYLRW----SSRITEQAKKF-ISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPL 239
Query: 563 -------KVDTEAALHPVEEYMTGVEEYYKQL-ALTQTVDVKRVYVATDDASVLTEIREK 614
E ++ +Q+ ++ K V+VA+D ++ EI E
Sbjct: 240 FASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEA 299
Query: 615 YPQYSVLGDPSIARTASLEHRYLKSSLLGIITDLHYLSNCDHLVC----TFSSQICR 667
E + + T L + D V TFS + R
Sbjct: 300 LK--------------PYEIEAHRQEPDDMYTSLAIMGRADLFVGNCVSTFSHIVKR 342
Score = 28.6 bits (63), Expect = 9.5
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 30/119 (25%)
Query: 264 WWIGQFLMFLNNPTPNTREIVAKYGEKIKFQKPIVGIHIRRTD----------------- 306
W I ++L + + E K+ KP V +H+R
Sbjct: 185 WSIQKYLRW----SSRITEQAKKF-ISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPL 239
Query: 307 -------KVDTEAALHPVEEYMTGVEEYYKQL-ALTQTVDVKRVYVATDDASVLTEIRE 357
E ++ +Q+ ++ K V+VA+D ++ EI E
Sbjct: 240 FASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINE 298
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 30.6 bits (68), Expect = 2.5
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 787 TFKTSADSFPAFAYIFRRIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRT 846
TF T+ PAF + + E+ V +V N S
Sbjct: 298 TFMTNDVPTPAFTKGIIPFFRHAIQNPAPSKEEV---VNRTKAVFWNGEGRISSLNGFYQ 354
Query: 847 DQLALYPTFKSVPHVETARFPTYPEVPSRWPNVKKA 882
LY +++P R+ P + + K +
Sbjct: 355 G---LYSNDETMPLYNNGRYHILPVIHEKIDKEKIS 387
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 29.8 bits (66), Expect = 2.6
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 7 ELARKRVSKDVQELWYYVSSELTQFRTELVNKTPQLAGGPNIQYELARKRVSKDVQELWY 66
+ A+ R+ D++++ + + + L T +L RKR+ +D +L
Sbjct: 98 QAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDL-- 155
Query: 67 YVSSELTQFRTELVNKTPQLAGKLDRIIAETAEHKRS 103
L ++ + + + E R
Sbjct: 156 --QKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRV 190
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 29.7 bits (66), Expect = 3.1
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 807 IAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKSVPHVETARF 866
IA+ + P H ++ G+++ + + K ++L T Q P
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKANSLEPE 74
Query: 867 PTYPEVPSR 875
P + + SR
Sbjct: 75 PWFFKNLSR 83
Score = 28.9 bits (64), Expect = 5.1
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 740 IAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKTSADSFPAFA 799
IA+ + P H ++ G+++ + + K ++L T Q P + +
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKANSLEPE 74
Query: 800 YIF 802
F
Sbjct: 75 PWF 77
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM
Fe-coproporphyrin III cofactor, iron storage-electron
complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans}
SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Length = 179
Score = 29.2 bits (65), Expect = 4.8
Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 9/106 (8%)
Query: 15 KDVQELWYYVSSELTQFRTELVNKTPQLAGGPNIQYELARKRVSKDVQELWYYVSSELTQ 74
++ ++ + + + +L G P Q + + V ++ + +
Sbjct: 43 GELAANMKLIAIDEMRHAENFAERIKELGGEPTTQK-EGKVVTGQAVPVIYESDADQEDA 101
Query: 75 FRTELVNKTPQLAGKLD--------RIIAETAEHKRSLLHVLDTLK 112
+ D RII E H ++ +K
Sbjct: 102 TIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIK 147
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 27.6 bits (61), Expect = 4.8
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 808 AVLPHTPRHSSEMDLMVGDRISVAGNHW---------------NGYSKGRNLRTDQLALY 852
A+ P +++L+ GD + V+ G+ G N RT Q +
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75
Query: 853 P 853
P
Sbjct: 76 P 76
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 26.9 bits (60), Expect = 5.6
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 801 IFRRIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYP 853
I + +A+ P + +E+ L GD + ++ H G+ N + L P
Sbjct: 3 IVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVP 55
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 29.3 bits (66), Expect = 6.0
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 740 IAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYP-TFKTSADSFPAF 798
+A+ + R ++++ G+R+ + N + +L T Q P + +DS A
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 799 AYIFRRI 805
+ F +I
Sbjct: 66 EWYFGKI 72
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
cytoplastic, hydrolase; 2.00A {Homo sapiens}
Length = 223
Score = 28.2 bits (62), Expect = 9.6
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 34/104 (32%)
Query: 91 DRIIAETAEHKRSLLHVLDTLKARDSFDDWRWKESLDLSDLVQRRL-------------- 136
DR I + A ++ + D++ D + E + ++ RL
Sbjct: 115 DRFIVKLAYESDGIV------VSNDTYRDLQ-GERQEWKRFIEERLLMYSFVNDKFMPPD 167
Query: 137 -----------EYLQNPPDCRTARKLVCELNKGCGYG--CQLHH 167
+L+ P RK C + C YG C+ H
Sbjct: 168 DPLGRHGPSLDNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFH 211
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 28.6 bits (63), Expect = 9.8
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 746 TPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQ-------LALYPTFKTSADSFPAF 798
T R + E + I +G + +Q L + + ++
Sbjct: 81 TVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLA 140
Query: 799 AYIFRRIH--IAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLR 845
AY I + T +++ G+R+ + + + RN
Sbjct: 141 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,370,061
Number of extensions: 891575
Number of successful extensions: 1838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 60
Length of query: 905
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 803
Effective length of database: 3,853,851
Effective search space: 3094642353
Effective search space used: 3094642353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)