Query psy16353
Match_columns 132
No_of_seqs 156 out of 1343
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:11:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-30 2.2E-35 217.3 8.6 117 16-132 208-335 (819)
2 PRK11664 ATP-dependent RNA hel 100.0 5E-30 1.1E-34 213.2 8.6 117 16-132 211-338 (812)
3 KOG0331|consensus 100.0 2.6E-29 5.7E-34 198.1 9.2 101 14-132 338-447 (519)
4 KOG0330|consensus 99.9 4.9E-28 1.1E-32 183.7 7.4 106 9-132 292-406 (476)
5 KOG0922|consensus 99.9 5.1E-28 1.1E-32 193.0 7.6 124 9-132 250-389 (674)
6 KOG0923|consensus 99.9 7.5E-28 1.6E-32 192.1 7.7 125 8-132 464-605 (902)
7 PRK11131 ATP-dependent RNA hel 99.9 2.8E-27 6.1E-32 201.8 8.2 116 15-132 284-410 (1294)
8 TIGR01967 DEAH_box_HrpA ATP-de 99.9 4.3E-27 9.3E-32 201.0 8.2 115 16-132 278-403 (1283)
9 KOG0328|consensus 99.9 3.2E-26 6.8E-31 168.5 8.3 105 9-131 258-371 (400)
10 COG0513 SrmB Superfamily II DN 99.9 1.4E-26 3.1E-31 185.1 6.8 106 8-131 264-378 (513)
11 KOG0924|consensus 99.9 3.5E-26 7.7E-31 183.3 8.3 125 8-132 554-696 (1042)
12 COG1643 HrpA HrpA-like helicas 99.9 2.4E-26 5.3E-31 190.3 7.4 121 12-132 254-386 (845)
13 PHA02653 RNA helicase NPH-II; 99.9 1.3E-25 2.9E-30 183.5 8.3 109 16-132 394-513 (675)
14 KOG0333|consensus 99.9 1.3E-25 2.7E-30 175.8 7.2 106 9-132 509-623 (673)
15 PRK04837 ATP-dependent RNA hel 99.9 1.1E-25 2.4E-30 176.2 5.2 100 15-132 253-361 (423)
16 PTZ00110 helicase; Provisional 99.9 4.6E-25 1E-29 177.6 8.4 99 16-132 376-483 (545)
17 PRK11776 ATP-dependent RNA hel 99.9 3.6E-25 7.8E-30 174.9 6.9 101 14-132 239-348 (460)
18 PLN00206 DEAD-box ATP-dependen 99.9 2.5E-24 5.4E-29 172.5 7.8 97 17-131 367-473 (518)
19 KOG0920|consensus 99.9 2.2E-24 4.8E-29 178.9 6.7 123 10-132 406-543 (924)
20 PRK04537 ATP-dependent RNA hel 99.9 3.3E-24 7.2E-29 173.4 7.5 101 13-131 253-362 (572)
21 KOG0340|consensus 99.9 3.3E-24 7.1E-29 161.5 6.7 99 16-132 253-360 (442)
22 PRK10590 ATP-dependent RNA hel 99.9 3.1E-24 6.8E-29 169.6 7.0 99 15-131 243-350 (456)
23 PRK11192 ATP-dependent RNA hel 99.9 7.7E-24 1.7E-28 166.2 8.3 99 15-131 243-350 (434)
24 PRK01297 ATP-dependent RNA hel 99.9 7.1E-24 1.5E-28 168.2 7.7 99 15-131 333-440 (475)
25 TIGR00614 recQ_fam ATP-depende 99.9 8.1E-24 1.8E-28 167.8 7.6 98 16-131 225-331 (470)
26 PRK11057 ATP-dependent DNA hel 99.9 1.3E-23 2.7E-28 171.1 7.2 99 15-131 234-341 (607)
27 KOG0342|consensus 99.9 5.7E-24 1.2E-28 165.2 4.5 103 11-131 323-435 (543)
28 KOG0332|consensus 99.9 3.6E-23 7.8E-28 156.8 8.5 104 15-130 328-440 (477)
29 KOG0326|consensus 99.9 6.1E-24 1.3E-28 158.7 4.3 103 11-131 316-427 (459)
30 PRK11634 ATP-dependent RNA hel 99.9 2.2E-23 4.7E-28 170.1 7.7 99 15-131 243-350 (629)
31 PTZ00424 helicase 45; Provisio 99.9 1.6E-23 3.5E-28 162.4 6.6 100 15-132 265-373 (401)
32 KOG0925|consensus 99.9 1E-23 2.2E-28 164.3 5.4 120 9-132 245-386 (699)
33 PLN03137 ATP-dependent DNA hel 99.9 2.6E-23 5.5E-28 175.4 8.0 97 17-131 680-785 (1195)
34 KOG0926|consensus 99.9 2.5E-23 5.4E-28 169.1 5.5 100 32-131 603-702 (1172)
35 KOG0336|consensus 99.9 1.3E-22 2.9E-27 155.6 8.0 99 16-132 464-571 (629)
36 KOG0335|consensus 99.9 1.1E-22 2.4E-27 158.9 6.8 96 18-131 338-442 (482)
37 KOG0345|consensus 99.9 1.4E-22 3E-27 157.1 6.3 103 11-131 249-362 (567)
38 KOG0341|consensus 99.9 4.6E-22 1E-26 151.9 7.3 99 16-132 420-527 (610)
39 KOG0343|consensus 99.9 3.4E-22 7.4E-27 157.5 6.4 108 7-132 303-421 (758)
40 TIGR03817 DECH_helic helicase/ 99.9 3.8E-22 8.2E-27 165.4 6.6 98 16-131 270-384 (742)
41 TIGR01389 recQ ATP-dependent D 99.9 5.6E-22 1.2E-26 161.0 7.3 98 16-131 223-329 (591)
42 KOG0338|consensus 99.9 2.2E-22 4.8E-27 157.4 4.1 98 16-131 425-531 (691)
43 KOG0347|consensus 99.9 2.3E-22 4.9E-27 158.4 3.5 109 5-131 451-568 (731)
44 KOG0344|consensus 99.8 6.3E-21 1.4E-25 150.7 7.4 99 16-132 386-494 (593)
45 KOG0348|consensus 99.8 7.6E-21 1.7E-25 149.5 7.7 102 12-131 420-552 (708)
46 KOG0349|consensus 99.8 1.8E-20 4E-25 144.9 8.0 100 13-130 501-612 (725)
47 COG0514 RecQ Superfamily II DN 99.8 3.5E-20 7.6E-25 148.7 8.9 100 15-132 228-336 (590)
48 TIGR00580 mfd transcription-re 99.8 3.4E-20 7.4E-25 156.2 8.6 99 16-131 659-768 (926)
49 KOG0350|consensus 99.8 1.7E-20 3.6E-25 146.5 4.8 107 8-132 420-539 (620)
50 PRK10917 ATP-dependent DNA hel 99.8 2E-19 4.4E-24 148.2 9.8 99 16-131 470-587 (681)
51 PRK13767 ATP-dependent helicas 99.8 9.3E-20 2E-24 153.5 7.5 88 16-121 283-384 (876)
52 COG1111 MPH1 ERCC4-like helica 99.8 1.6E-19 3.5E-24 141.3 8.2 101 14-132 363-480 (542)
53 PRK10689 transcription-repair 99.8 6E-20 1.3E-24 157.4 5.9 99 16-131 808-917 (1147)
54 TIGR00643 recG ATP-dependent D 99.8 3.5E-19 7.5E-24 145.8 9.9 98 16-130 447-563 (630)
55 KOG0327|consensus 99.8 1.2E-19 2.6E-24 137.7 6.1 98 16-131 262-368 (397)
56 PF00271 Helicase_C: Helicase 99.8 3E-19 6.5E-24 109.2 5.6 72 32-121 6-77 (78)
57 TIGR00631 uvrb excinuclease AB 99.8 7.1E-19 1.5E-23 144.1 8.6 98 16-131 441-551 (655)
58 PRK09751 putative ATP-dependen 99.8 3E-19 6.5E-24 155.0 6.2 69 36-122 304-372 (1490)
59 KOG0339|consensus 99.8 1.6E-18 3.6E-23 135.9 6.9 101 14-132 465-574 (731)
60 TIGR01587 cas3_core CRISPR-ass 99.8 3.6E-18 7.9E-23 130.9 8.5 85 16-121 221-319 (358)
61 PRK04914 ATP-dependent helicas 99.8 2.2E-18 4.7E-23 145.4 7.9 97 11-125 487-595 (956)
62 KOG0354|consensus 99.7 2E-18 4.4E-23 140.7 7.2 99 14-131 410-527 (746)
63 PRK05298 excinuclease ABC subu 99.7 3.9E-18 8.4E-23 140.0 8.8 103 16-131 445-555 (652)
64 PRK12898 secA preprotein trans 99.7 3.8E-18 8.3E-23 138.9 8.1 95 17-131 473-584 (656)
65 PRK09200 preprotein translocas 99.7 4.8E-18 1E-22 140.8 8.4 96 16-131 427-539 (790)
66 PRK13766 Hef nuclease; Provisi 99.7 7E-18 1.5E-22 140.6 8.7 100 15-132 363-478 (773)
67 KOG4284|consensus 99.7 4E-18 8.6E-23 136.9 5.4 104 9-130 264-376 (980)
68 cd00079 HELICc Helicase superf 99.7 3.2E-17 7E-22 108.1 6.8 95 16-128 27-130 (131)
69 KOG0346|consensus 99.7 2.7E-17 5.9E-22 127.2 5.6 98 16-131 267-408 (569)
70 PRK02362 ski2-like helicase; P 99.7 5E-17 1.1E-21 135.1 6.9 88 35-131 305-395 (737)
71 TIGR03714 secA2 accessory Sec 99.7 1.1E-16 2.3E-21 132.1 8.5 96 15-131 422-535 (762)
72 PRK00254 ski2-like helicase; P 99.7 5.7E-17 1.2E-21 134.5 6.9 87 35-131 297-386 (720)
73 KOG0334|consensus 99.7 9.1E-17 2E-21 133.8 7.0 98 16-131 612-718 (997)
74 PRK01172 ski2-like helicase; P 99.7 1.8E-16 4E-21 130.6 8.2 105 16-130 235-375 (674)
75 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.3E-16 2.8E-21 132.7 7.2 83 16-121 271-377 (844)
76 TIGR00603 rad25 DNA repair hel 99.7 9E-17 1.9E-21 132.3 6.0 100 16-132 495-606 (732)
77 smart00490 HELICc helicase sup 99.7 4.2E-16 9.1E-21 94.9 6.6 71 33-121 11-81 (82)
78 PHA02558 uvsW UvsW helicase; P 99.7 3E-16 6.6E-21 125.6 7.7 91 17-125 344-443 (501)
79 KOG0351|consensus 99.6 4.1E-16 8.9E-21 131.2 6.3 99 15-131 483-590 (941)
80 TIGR00963 secA preprotein tran 99.6 2E-15 4.3E-20 124.2 8.2 97 15-131 403-515 (745)
81 KOG0337|consensus 99.6 3.7E-16 8.1E-21 120.4 3.4 98 16-131 260-366 (529)
82 PRK12906 secA preprotein trans 99.6 2E-15 4.3E-20 125.0 7.6 97 15-131 438-551 (796)
83 KOG0352|consensus 99.6 8.1E-16 1.8E-20 119.1 4.2 107 8-132 246-361 (641)
84 COG1201 Lhr Lhr-like helicases 99.6 3.2E-15 7E-20 124.0 7.6 88 16-121 252-348 (814)
85 TIGR03158 cas3_cyano CRISPR-as 99.5 8.9E-15 1.9E-19 112.8 6.0 77 16-119 271-357 (357)
86 PRK12900 secA preprotein trans 99.5 3.5E-14 7.6E-19 119.1 6.0 96 16-131 597-709 (1025)
87 COG1200 RecG RecG-like helicas 99.5 1.3E-13 2.8E-18 111.7 8.9 99 16-131 472-589 (677)
88 COG1197 Mfd Transcription-repa 99.4 6.6E-13 1.4E-17 112.6 8.0 100 15-131 801-911 (1139)
89 PRK09694 helicase Cas3; Provis 99.4 4.7E-13 1E-17 112.7 7.0 85 16-121 559-662 (878)
90 COG1202 Superfamily II helicas 99.4 1.2E-13 2.6E-18 110.3 3.2 101 16-130 439-550 (830)
91 PRK09401 reverse gyrase; Revie 99.4 4E-13 8.7E-18 116.1 5.0 85 18-119 329-429 (1176)
92 PRK14701 reverse gyrase; Provi 99.3 1.1E-12 2.4E-17 115.9 4.9 74 10-89 324-413 (1638)
93 COG4098 comFA Superfamily II D 99.3 3.5E-12 7.7E-17 96.7 6.6 95 16-129 304-412 (441)
94 KOG0353|consensus 99.3 4.5E-12 9.8E-17 97.6 5.9 100 13-130 313-464 (695)
95 TIGR00595 priA primosomal prot 99.3 1.3E-11 2.8E-16 99.1 7.8 88 32-127 283-375 (505)
96 COG1061 SSL2 DNA or RNA helica 99.3 1.5E-11 3.3E-16 97.3 7.5 87 16-121 282-376 (442)
97 TIGR01054 rgy reverse gyrase. 99.2 7.9E-12 1.7E-16 108.2 5.2 71 17-91 326-412 (1171)
98 COG1205 Distinct helicase fami 99.2 2.1E-11 4.6E-16 102.8 6.4 97 16-129 305-418 (851)
99 PRK05580 primosome assembly pr 99.2 5.7E-11 1.2E-15 98.4 6.2 89 32-128 451-544 (679)
100 PRK11448 hsdR type I restricti 99.1 9.4E-11 2E-15 101.2 6.9 91 16-126 697-807 (1123)
101 KOG0329|consensus 99.1 2.8E-11 6E-16 89.0 1.6 80 7-131 273-353 (387)
102 COG1204 Superfamily II helicas 99.1 2.2E-10 4.8E-15 95.7 7.1 85 36-129 317-404 (766)
103 COG0556 UvrB Helicase subunit 99.1 3.7E-10 8.1E-15 89.9 7.0 102 16-130 445-554 (663)
104 KOG0921|consensus 99.1 5.9E-11 1.3E-15 98.7 2.6 101 32-132 673-773 (1282)
105 KOG0950|consensus 99.0 6.8E-10 1.5E-14 92.8 7.0 85 33-131 522-609 (1008)
106 KOG0953|consensus 99.0 1.8E-09 3.8E-14 86.4 8.2 111 12-132 352-476 (700)
107 PRK12904 preprotein translocas 99.0 1.4E-09 2.9E-14 91.2 7.6 96 16-131 429-571 (830)
108 PLN03142 Probable chromatin-re 99.0 1.6E-09 3.4E-14 92.8 7.6 99 16-132 486-598 (1033)
109 PRK13104 secA preprotein trans 98.9 4.2E-09 9.1E-14 88.6 8.2 113 16-131 443-585 (896)
110 KOG4150|consensus 98.9 8.7E-10 1.9E-14 88.7 3.4 93 17-127 525-634 (1034)
111 PRK13107 preprotein translocas 98.9 7.1E-09 1.5E-13 87.2 7.9 96 16-131 448-589 (908)
112 COG1203 CRISPR-associated heli 98.8 1.2E-08 2.5E-13 85.4 5.5 93 15-128 438-545 (733)
113 KOG0951|consensus 98.6 1.1E-07 2.3E-12 82.0 6.4 82 33-122 607-688 (1674)
114 KOG0948|consensus 98.5 3.1E-08 6.7E-13 81.7 1.0 85 37-131 450-537 (1041)
115 KOG0947|consensus 98.4 6.5E-07 1.4E-11 75.7 6.6 85 36-130 633-720 (1248)
116 KOG0952|consensus 98.1 1.5E-05 3.1E-10 68.2 7.8 105 16-128 348-486 (1230)
117 KOG0392|consensus 98.0 2E-05 4.3E-10 68.4 6.9 102 16-132 1339-1453(1549)
118 KOG0385|consensus 98.0 2.5E-05 5.5E-10 65.1 7.2 102 16-132 486-598 (971)
119 KOG0949|consensus 98.0 1.8E-05 3.8E-10 67.5 6.1 76 37-129 966-1044(1330)
120 COG4581 Superfamily II RNA hel 97.9 2.3E-05 5E-10 67.4 5.0 83 38-130 449-534 (1041)
121 KOG1123|consensus 97.8 2.2E-05 4.8E-10 63.0 4.2 89 16-121 542-634 (776)
122 PRK12903 secA preprotein trans 97.8 6.8E-05 1.5E-09 63.6 7.1 96 16-131 425-537 (925)
123 KOG0390|consensus 97.7 0.00014 3E-09 61.2 7.9 82 32-131 618-705 (776)
124 KOG0384|consensus 97.6 0.00013 2.7E-09 63.5 6.2 102 16-132 698-810 (1373)
125 TIGR00348 hsdR type I site-spe 97.6 0.00027 5.8E-09 59.0 7.0 90 17-125 514-639 (667)
126 KOG0389|consensus 97.6 0.00038 8.2E-09 58.4 7.7 102 16-132 776-887 (941)
127 TIGR01407 dinG_rel DnaQ family 97.5 6.2E-05 1.4E-09 64.3 2.9 109 16-127 673-809 (850)
128 KOG0387|consensus 97.5 0.00057 1.2E-08 57.4 7.9 102 16-132 545-657 (923)
129 COG4096 HsdR Type I site-speci 97.5 0.00035 7.6E-09 58.8 6.7 85 17-121 426-525 (875)
130 PRK12326 preprotein translocas 97.5 0.00054 1.2E-08 57.4 7.7 96 16-131 426-545 (764)
131 PRK12899 secA preprotein trans 97.5 0.00036 7.9E-09 59.8 6.8 96 16-131 567-679 (970)
132 KOG0391|consensus 97.3 0.00064 1.4E-08 59.4 6.8 102 16-132 1275-1386(1958)
133 PF13307 Helicase_C_2: Helicas 97.2 0.00023 4.9E-09 49.4 2.5 105 15-123 7-139 (167)
134 COG1198 PriA Primosomal protei 97.2 0.00053 1.2E-08 57.6 4.9 88 32-127 505-597 (730)
135 COG0553 HepA Superfamily II DN 97.2 0.0014 3.1E-08 55.3 7.1 99 19-132 713-821 (866)
136 PRK12901 secA preprotein trans 96.9 0.0021 4.5E-08 55.7 5.8 96 16-131 627-739 (1112)
137 TIGR02562 cas3_yersinia CRISPR 96.8 0.0048 1E-07 53.7 6.8 70 32-122 785-880 (1110)
138 COG4889 Predicted helicase [Ge 96.7 0.0021 4.6E-08 55.1 4.5 92 16-125 459-576 (1518)
139 PRK13103 secA preprotein trans 96.5 0.0064 1.4E-07 52.2 5.8 96 16-131 448-589 (913)
140 KOG0388|consensus 96.1 0.02 4.4E-07 48.3 6.3 102 16-132 1043-1153(1185)
141 PF06862 DUF1253: Protein of u 95.7 0.095 2.1E-06 42.0 8.6 81 14-94 297-387 (442)
142 KOG1000|consensus 95.5 0.05 1.1E-06 44.2 6.4 79 15-97 490-578 (689)
143 KOG1015|consensus 95.4 0.065 1.4E-06 46.7 6.9 100 16-130 1141-1274(1567)
144 KOG1002|consensus 95.3 0.074 1.6E-06 43.3 6.7 101 16-131 637-747 (791)
145 CHL00122 secA preprotein trans 95.3 0.06 1.3E-06 46.3 6.5 58 16-75 423-490 (870)
146 COG1110 Reverse gyrase [DNA re 95.2 0.029 6.2E-07 48.8 4.3 74 11-90 330-419 (1187)
147 PRK10917 ATP-dependent DNA hel 95.0 0.035 7.7E-07 46.6 4.3 67 16-82 309-388 (681)
148 PRK05580 primosome assembly pr 94.5 0.061 1.3E-06 45.3 4.5 65 17-82 190-263 (679)
149 PRK07246 bifunctional ATP-depe 94.4 0.049 1.1E-06 46.8 3.8 110 16-128 646-779 (820)
150 smart00491 HELICc2 helicase su 94.2 0.071 1.5E-06 36.1 3.6 74 49-122 34-127 (142)
151 smart00492 HELICc3 helicase su 94.0 0.064 1.4E-06 36.3 3.1 78 45-122 33-126 (141)
152 COG1199 DinG Rad3-related DNA 93.9 0.18 3.9E-06 42.0 6.1 108 15-128 477-613 (654)
153 TIGR00643 recG ATP-dependent D 93.7 0.089 1.9E-06 43.9 3.9 67 16-82 283-362 (630)
154 PRK08074 bifunctional ATP-depe 93.6 0.05 1.1E-06 47.3 2.4 110 16-127 751-888 (928)
155 TIGR00595 priA primosomal prot 93.4 0.1 2.2E-06 42.4 3.9 66 16-82 24-98 (505)
156 PF13871 Helicase_C_4: Helicas 93.4 0.23 4.9E-06 37.5 5.4 61 51-121 53-113 (278)
157 PRK11747 dinG ATP-dependent DN 93.2 0.13 2.8E-06 43.5 4.2 108 16-127 533-669 (697)
158 COG0513 SrmB Superfamily II DN 92.6 0.16 3.6E-06 41.3 3.9 59 20-82 102-179 (513)
159 TIGR00580 mfd transcription-re 92.4 0.17 3.7E-06 44.1 4.0 67 16-82 499-578 (926)
160 KOG4439|consensus 92.4 0.66 1.4E-05 39.4 7.1 86 31-131 768-856 (901)
161 TIGR00604 rad3 DNA repair heli 92.0 0.38 8.1E-06 40.7 5.4 106 16-123 521-663 (705)
162 COG1110 Reverse gyrase [DNA re 91.9 0.12 2.6E-06 45.2 2.5 53 16-69 124-191 (1187)
163 PRK10689 transcription-repair 91.4 0.25 5.3E-06 44.1 3.8 67 16-82 648-727 (1147)
164 PRK14873 primosome assembly pr 90.5 0.45 9.7E-06 40.1 4.4 66 16-82 187-262 (665)
165 COG0653 SecA Preprotein transl 89.1 0.91 2E-05 39.1 5.2 59 16-76 428-494 (822)
166 COG1198 PriA Primosomal protei 88.9 0.45 9.8E-06 40.5 3.3 66 16-82 244-318 (730)
167 KOG0347|consensus 88.7 0.38 8.3E-06 39.7 2.6 45 19-67 265-321 (731)
168 PRK14701 reverse gyrase; Provi 88.6 0.54 1.2E-05 43.5 3.8 53 16-68 121-187 (1638)
169 PF02399 Herpes_ori_bp: Origin 86.2 0.94 2E-05 38.9 3.6 96 16-129 281-384 (824)
170 KOG0701|consensus 85.9 0.17 3.7E-06 46.2 -0.8 55 48-120 343-397 (1606)
171 KOG0339|consensus 85.1 1.4 3.1E-05 36.2 4.0 63 16-82 295-375 (731)
172 PRK11192 ATP-dependent RNA hel 84.5 2.2 4.8E-05 33.7 4.9 63 16-82 72-152 (434)
173 TIGR01054 rgy reverse gyrase. 84.4 0.92 2E-05 40.7 3.0 52 17-68 121-187 (1171)
174 cd00268 DEADc DEAD-box helicas 83.7 2.6 5.6E-05 29.3 4.5 63 16-82 68-148 (203)
175 PRK14873 primosome assembly pr 82.9 1.7 3.7E-05 36.7 3.8 70 50-129 463-535 (665)
176 PRK10590 ATP-dependent RNA hel 82.2 3.2 6.9E-05 33.2 5.0 62 17-82 75-154 (456)
177 PRK04537 ATP-dependent RNA hel 82.2 2.1 4.6E-05 35.4 4.1 62 17-82 84-164 (572)
178 PRK11634 ATP-dependent RNA hel 82.0 2.5 5.4E-05 35.5 4.4 63 16-82 73-154 (629)
179 KOG1016|consensus 81.8 4.8 0.0001 35.1 5.9 82 34-130 762-846 (1387)
180 TIGR00596 rad1 DNA repair prot 81.7 2.6 5.7E-05 36.5 4.5 14 64-77 431-444 (814)
181 KOG0331|consensus 81.6 1.9 4.2E-05 35.3 3.5 64 15-82 163-244 (519)
182 KOG0951|consensus 81.0 8.3 0.00018 35.3 7.3 105 15-130 1357-1491(1674)
183 PRK11776 ATP-dependent RNA hel 80.2 2.7 5.8E-05 33.5 3.9 61 18-82 73-152 (460)
184 PRK04837 ATP-dependent RNA hel 80.2 3.7 8.1E-05 32.4 4.7 62 17-82 83-162 (423)
185 TIGR00614 recQ_fam ATP-depende 77.3 1.4 3E-05 35.4 1.5 52 16-67 50-109 (470)
186 COG1111 MPH1 ERCC4-like helica 77.0 3.7 8E-05 33.6 3.8 62 16-82 57-136 (542)
187 PRK12902 secA preprotein trans 74.3 2.9 6.2E-05 36.6 2.7 58 16-75 438-505 (939)
188 KOG0386|consensus 73.6 9 0.00019 34.1 5.4 72 17-88 726-808 (1157)
189 TIGR01389 recQ ATP-dependent D 72.6 2.2 4.7E-05 35.3 1.5 52 16-67 52-111 (591)
190 PRK09401 reverse gyrase; Revie 72.4 5 0.00011 36.3 3.8 52 16-67 122-187 (1176)
191 COG0514 RecQ Superfamily II DN 72.3 3.1 6.8E-05 34.7 2.4 36 32-67 80-115 (590)
192 PF10657 RC-P840_PscD: Photosy 71.9 11 0.00024 25.0 4.4 52 33-86 48-107 (144)
193 PRK01297 ATP-dependent RNA hel 71.3 9.3 0.0002 30.7 4.8 63 17-82 162-242 (475)
194 PTZ00110 helicase; Provisional 70.8 6.8 0.00015 32.3 4.0 62 17-82 203-282 (545)
195 COG1197 Mfd Transcription-repa 68.0 14 0.00029 33.4 5.4 68 15-82 641-721 (1139)
196 KOG1513|consensus 67.9 6.1 0.00013 34.5 3.2 59 53-121 851-909 (1300)
197 PLN03137 ATP-dependent DNA hel 65.1 3.5 7.6E-05 37.1 1.4 52 16-67 499-560 (1195)
198 TIGR03117 cas_csf4 CRISPR-asso 64.6 8.7 0.00019 32.5 3.5 103 16-121 469-601 (636)
199 PF10593 Z1: Z1 domain; Inter 63.6 22 0.00049 26.1 5.2 67 33-119 110-177 (239)
200 COG1200 RecG RecG-like helicas 62.7 14 0.0003 31.5 4.3 66 17-82 311-389 (677)
201 KOG0338|consensus 62.0 10 0.00022 31.5 3.3 64 15-82 250-332 (691)
202 KOG0389|consensus 60.3 11 0.00023 32.8 3.3 52 16-69 447-509 (941)
203 PRK11057 ATP-dependent DNA hel 57.6 6.5 0.00014 32.8 1.6 52 16-67 64-123 (607)
204 KOG0329|consensus 57.6 11 0.00024 28.6 2.6 63 16-82 109-190 (387)
205 KOG0350|consensus 56.1 21 0.00046 29.5 4.2 66 17-82 215-300 (620)
206 PRK13766 Hef nuclease; Provisi 55.6 18 0.00039 30.9 4.0 62 16-82 57-136 (773)
207 COG1660 Predicted P-loop-conta 53.2 43 0.00093 25.4 5.1 57 40-97 139-199 (286)
208 KOG0921|consensus 52.4 0.93 2E-05 39.6 -4.1 95 34-128 683-777 (1282)
209 KOG0336|consensus 50.8 36 0.00078 27.7 4.6 64 15-82 292-372 (629)
210 KOG1001|consensus 47.9 1.3 2.8E-05 37.5 -3.9 97 19-130 541-647 (674)
211 TIGR00963 secA preprotein tran 43.8 40 0.00086 29.2 4.2 47 16-68 96-154 (745)
212 KOG0330|consensus 43.1 27 0.00059 28.1 2.9 65 14-82 126-209 (476)
213 PLN00206 DEAD-box ATP-dependen 42.5 45 0.00099 27.2 4.3 63 16-82 195-275 (518)
214 PRK12898 secA preprotein trans 41.4 36 0.00078 29.0 3.5 54 15-75 142-207 (656)
215 PF00270 DEAD: DEAD/DEAH box h 36.1 41 0.00088 22.2 2.7 63 16-82 43-124 (169)
216 PHA03371 circ protein; Provisi 36.0 42 0.0009 24.8 2.7 56 68-130 29-87 (240)
217 smart00493 TOPRIM topoisomeras 35.1 73 0.0016 18.2 3.4 38 34-72 23-60 (76)
218 KOG0385|consensus 34.9 54 0.0012 28.8 3.6 50 15-66 215-274 (971)
219 PRK13104 secA preprotein trans 33.2 59 0.0013 28.8 3.6 47 16-68 122-180 (896)
220 KOG0351|consensus 31.4 56 0.0012 29.1 3.3 36 32-67 327-364 (941)
221 PF03668 ATP_bind_2: P-loop AT 31.2 1.5E+02 0.0033 22.6 5.2 57 40-97 138-198 (284)
222 PRK15483 type III restriction- 30.9 79 0.0017 28.4 4.1 45 59-121 501-545 (986)
223 TIGR03817 DECH_helic helicase/ 29.2 69 0.0015 27.7 3.4 61 17-82 81-162 (742)
224 COG0610 Type I site-specific r 28.4 1.1E+02 0.0024 27.4 4.5 51 55-124 589-639 (962)
225 PF04210 MtrG: Tetrahydrometha 27.5 30 0.00064 20.6 0.7 14 108-121 32-46 (70)
226 KOG0352|consensus 26.8 25 0.00054 28.7 0.4 58 10-67 54-121 (641)
227 PF04763 DUF562: Protein of un 25.9 2.2E+02 0.0048 19.4 6.0 66 12-77 10-95 (146)
228 KOG0334|consensus 25.4 1.2E+02 0.0026 27.3 4.1 48 16-67 437-496 (997)
229 cd01027 TOPRIM_RNase_M5_like T 24.7 1.3E+02 0.0029 18.0 3.3 36 34-72 23-58 (81)
230 PF07013 DUF1314: Protein of u 23.3 1.5E+02 0.0032 20.9 3.6 54 68-130 8-64 (177)
231 COG3587 Restriction endonuclea 23.0 1E+02 0.0022 27.5 3.2 51 59-127 483-536 (985)
232 PRK12902 secA preprotein trans 21.8 65 0.0014 28.7 1.9 25 107-131 661-686 (939)
233 TIGR00824 EIIA-man PTS system, 21.5 2.3E+02 0.005 18.1 4.3 37 32-69 28-68 (116)
234 cd01294 DHOase Dihydroorotase 21.4 72 0.0016 24.3 2.0 26 45-70 220-245 (335)
235 COG1201 Lhr Lhr-like helicases 21.3 79 0.0017 27.8 2.3 47 32-82 100-154 (814)
236 KOG2340|consensus 20.3 1.6E+02 0.0035 24.9 3.8 72 17-90 552-635 (698)
237 PRK12899 secA preprotein trans 20.3 1.2E+02 0.0026 27.2 3.2 44 19-68 137-192 (970)
No 1
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1e-30 Score=217.28 Aligned_cols=117 Identities=29% Similarity=0.395 Sum_probs=111.5
Q ss_pred CCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
.++++|||+++.++++ .++.+.++||+|++++|.++++.|++|+++||||||+||+|||||+|++|||+
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEc
Confidence 3689999999988772 47899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+|+...|||..+.+.+...|||+++|.||+||+||.++|.||+|||+
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCH
Confidence 999999999999999999999999999999999999999999999984
No 2
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.96 E-value=5e-30 Score=213.25 Aligned_cols=117 Identities=28% Similarity=0.402 Sum_probs=111.7
Q ss_pred CCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
.++++|||+++.++++ .++.+.++||+|++++|.++++.|++|+++||||||++|+|+|||+|++|||+
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~ 290 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDS 290 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEEC
Confidence 4689999999988872 47889999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+++...|||..+.+.+...|||+++|+||+||+||.++|.||+|||+
T Consensus 291 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 291 GLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred CCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCH
Confidence 999999999999999999999999999999999999999999999984
No 3
>KOG0331|consensus
Probab=99.96 E-value=2.6e-29 Score=198.09 Aligned_cols=101 Identities=23% Similarity=0.480 Sum_probs=95.1
Q ss_pred cCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 14 TFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
...++++||||+|++.++ .++++.++||+.++++|..+++.|++|+..||||||+|+||||+|+|++|||||
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInyd 417 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYD 417 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCC
Confidence 457889999999999994 579999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+|.+ .++|+||+||+||. +.|.++.|++.
T Consensus 418 fP~~------------------vEdYVHRiGRTGRa~~~G~A~tfft~ 447 (519)
T KOG0331|consen 418 FPNN------------------VEDYVHRIGRTGRAGKKGTAITFFTS 447 (519)
T ss_pred CCCC------------------HHHHHhhcCccccCCCCceEEEEEeH
Confidence 9995 69999999999998 89999999873
No 4
>KOG0330|consensus
Probab=99.95 E-value=4.9e-28 Score=183.73 Aligned_cols=106 Identities=21% Similarity=0.456 Sum_probs=97.8
Q ss_pred ccccccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccE
Q psy16353 9 FSPHATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80 (132)
Q Consensus 9 ~~~~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~ 80 (132)
..+.+....+..||||+|+..+ ..|+.+++|||+|+++.|...++.|++|.+.||||||+++||+|+|.|++
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 3445556678999999999988 38999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|||||+|.+ ..+|+||+||+||. ++|+++.|+|.
T Consensus 372 VVNyDiP~~------------------skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 372 VVNYDIPTH------------------SKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred EEecCCCCc------------------HHHHHHHcccccccCCCcceEEEEeh
Confidence 999999996 58999999999999 89999999874
No 5
>KOG0922|consensus
Probab=99.95 E-value=5.1e-28 Score=193.00 Aligned_cols=124 Identities=36% Similarity=0.505 Sum_probs=115.4
Q ss_pred ccccccCCCCeEEEEeecCCCCC----------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccc
Q psy16353 9 FSPHATFSPNISLLLCSSLNKPE----------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESS 72 (132)
Q Consensus 9 ~~~~~~~~~~~~ivF~~t~~~~~----------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 72 (132)
+.+|.+.+++.+|||....++.+ ....+.++||.|+.+++.++|+..+.|.+||+++||+||.+
T Consensus 250 ~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETS 329 (674)
T KOG0922|consen 250 IQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETS 329 (674)
T ss_pred HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeee
Confidence 56777889999999998887662 11257899999999999999999999999999999999999
Q ss_pred cccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 73 ITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 73 ldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
++||+|.||||+|+-+...|||..+...+...|||++++.||+|||||.+||+||+|||+
T Consensus 330 lTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte 389 (674)
T KOG0922|consen 330 LTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTE 389 (674)
T ss_pred EEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeH
Confidence 999999999999999999999999999999999999999999999999999999999985
No 6
>KOG0923|consensus
Probab=99.95 E-value=7.5e-28 Score=192.11 Aligned_cols=125 Identities=32% Similarity=0.471 Sum_probs=116.7
Q ss_pred cccccccCCCCeEEEEeecCCCCC-----------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccc
Q psy16353 8 TFSPHATFSPNISLLLCSSLNKPE-----------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAE 70 (132)
Q Consensus 8 ~~~~~~~~~~~~~ivF~~t~~~~~-----------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~ 70 (132)
.+++|-+.+.+.+|||..-.+..+ ..+-+.|+|++|+.+.+.++|+.-++|.++|++|||+||
T Consensus 464 VlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAE 543 (902)
T KOG0923|consen 464 VLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAE 543 (902)
T ss_pred heeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchh
Confidence 356777778899999997665552 788899999999999999999999999999999999999
Q ss_pred cccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 71 SSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 71 ~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
.+++|++|.||||.|+.+..+|||+.|..++...++|+++..||+|||||.+||+||+|||.
T Consensus 544 TSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~ 605 (902)
T KOG0923|consen 544 TSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTA 605 (902)
T ss_pred hceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeech
Confidence 99999999999999999999999999999999999999999999999999999999999983
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.94 E-value=2.8e-27 Score=201.77 Aligned_cols=116 Identities=33% Similarity=0.450 Sum_probs=107.4
Q ss_pred CCCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEe
Q psy16353 15 FSPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD 83 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~ 83 (132)
..++++|||+++.++++ ..+.+.++||+|++++|.++++. .|.++||||||+||+|+|+|+|+||||
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 45789999999988873 24568899999999999999986 478999999999999999999999999
Q ss_pred cCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
+|+.+...|||..++..+...|+|+++|.||+||+||.++|.||+|||+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte 410 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSE 410 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCH
Confidence 9999999999999999999999999999999999999999999999984
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=4.3e-27 Score=200.98 Aligned_cols=115 Identities=30% Similarity=0.441 Sum_probs=106.9
Q ss_pred CCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
.++++|||+++.++++ .++.+.++||+|++++|.++++.+ +.++||||||+||+|+|+|+|++|||+
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 5689999999998872 357799999999999999998775 347999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+++...|||..++..+...|+|+++|.||+||+||.++|.||+|||+
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte 403 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSE 403 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCH
Confidence 999999999999999999999999999999999999999999999984
No 9
>KOG0328|consensus
Probab=99.93 E-value=3.2e-26 Score=168.51 Aligned_cols=105 Identities=20% Similarity=0.434 Sum_probs=96.6
Q ss_pred ccccccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccE
Q psy16353 9 FSPHATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80 (132)
Q Consensus 9 ~~~~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~ 80 (132)
+.+-.+..-.+++|||||+..+ +.++.+.++||+|+++||.+++.+|+.|+.+||++||+.+||+|+|.|++
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 3444556678999999999998 38899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|||||+|.. .+.|+||+||.||. +.|.++.|+.
T Consensus 338 viNYDLP~n------------------re~YIHRIGRSGRFGRkGvainFVk 371 (400)
T KOG0328|consen 338 VINYDLPNN------------------RELYIHRIGRSGRFGRKGVAINFVK 371 (400)
T ss_pred EEecCCCcc------------------HHHHhhhhccccccCCcceEEEEec
Confidence 999999985 69999999999999 8999998875
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.4e-26 Score=185.14 Aligned_cols=106 Identities=23% Similarity=0.422 Sum_probs=97.3
Q ss_pred cccccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc
Q psy16353 8 TFSPHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK 79 (132)
Q Consensus 8 ~~~~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~ 79 (132)
++.+.....+.++||||+|+..++ .|+++..|||+|++++|.++++.|+.|+.+||||||+++||||+|+|+
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 344455556778999999999984 789999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+|||||+|.+ .+.|+||+||+||. ..|.++.|++
T Consensus 344 ~VinyD~p~~------------------~e~yvHRiGRTgRaG~~G~ai~fv~ 378 (513)
T COG0513 344 HVINYDLPLD------------------PEDYVHRIGRTGRAGRKGVAISFVT 378 (513)
T ss_pred eeEEccCCCC------------------HHHheeccCccccCCCCCeEEEEeC
Confidence 9999999985 69999999999999 8999999986
No 11
>KOG0924|consensus
Probab=99.93 E-value=3.5e-26 Score=183.26 Aligned_cols=125 Identities=30% Similarity=0.470 Sum_probs=117.1
Q ss_pred cccccccCCCCeEEEEeecCCCCC------------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc
Q psy16353 8 TFSPHATFSPNISLLLCSSLNKPE------------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA 69 (132)
Q Consensus 8 ~~~~~~~~~~~~~ivF~~t~~~~~------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~ 69 (132)
...+|....++.++||..-.++.+ .++.++++|++|+...+.++|+....|.+++|||||+|
T Consensus 554 ~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIA 633 (1042)
T KOG0924|consen 554 AVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIA 633 (1042)
T ss_pred heEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccch
Confidence 345666678899999998777663 48999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 70 ESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 70 ~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|.++++|++.||||+|+.+..+|||..|..++...+||+++.-||+|||||.+||.||+|||+
T Consensus 634 ETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe 696 (1042)
T KOG0924|consen 634 ETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTE 696 (1042)
T ss_pred hhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhh
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 12
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.4e-26 Score=190.28 Aligned_cols=121 Identities=34% Similarity=0.474 Sum_probs=113.3
Q ss_pred cccCCCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc
Q psy16353 12 HATFSPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK 79 (132)
Q Consensus 12 ~~~~~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~ 79 (132)
+....+|.+|||.+-.++.+ ..+.+.||||.|+.+++.++|+.-+.|+++||+|||+||.+|+||+|+
T Consensus 254 ~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 254 HLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred hccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 44456899999998776662 468999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
+|||+|+-+...|||..++..+..+|||++++.||+||+||..||+||+|||+
T Consensus 334 ~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse 386 (845)
T COG1643 334 YVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred EEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCH
Confidence 99999999999999999999999999999999999999999999999999985
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.92 E-value=1.3e-25 Score=183.50 Aligned_cols=109 Identities=26% Similarity=0.348 Sum_probs=92.2
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcC-CCCceEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRF-PPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f-~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
.++++|||++++++++ .++.+.++||+|++. ++.+++| +.|+++||||||+||+|+|+|+|++|||+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 3568999999998883 268999999999986 3556666 78999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+.+.+ +|..+ ...|+|+++|+||+||+||.++|.||+||++
T Consensus 472 G~~k~p--~~~~g----~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~ 513 (675)
T PHA02653 472 GRVYVP--EPFGG----KEMFISKSMRTQRKGRVGRVSPGTYVYFYDL 513 (675)
T ss_pred CCccCC--CcccC----cccccCHHHHHHhccCcCCCCCCeEEEEECH
Confidence 966543 23222 3569999999999999999999999999985
No 14
>KOG0333|consensus
Probab=99.92 E-value=1.3e-25 Score=175.79 Aligned_cols=106 Identities=22% Similarity=0.414 Sum_probs=97.4
Q ss_pred ccccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccE
Q psy16353 9 FSPHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80 (132)
Q Consensus 9 ~~~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~ 80 (132)
..+........+|||+|+++.++ .++.+..|||+-++++|+.+++.|++|...|+||||+|+||||+|+|.+
T Consensus 509 ~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 509 IEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred HHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccce
Confidence 33444455778999999999994 7899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|||||+++ |...|.||+||+||+ +.|.++.|+|+
T Consensus 589 Vinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 589 VINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred eeecchhh------------------hHHHHHHHhccccccccCceeEEEecc
Confidence 99999999 579999999999999 89999999985
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.1e-25 Score=176.22 Aligned_cols=100 Identities=18% Similarity=0.363 Sum_probs=93.2
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
..+.++||||++++.++ .++.+..+||+|++++|.+++++|++|+.++|||||++++|+|+|+|++||+||+
T Consensus 253 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 253 EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC
Confidence 35679999999998883 6899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|.+ .++|+||+||+||. +.|.++.|+++
T Consensus 333 P~s------------------~~~yiqR~GR~gR~G~~G~ai~~~~~ 361 (423)
T PRK04837 333 PDD------------------CEDYVHRIGRTGRAGASGHSISLACE 361 (423)
T ss_pred CCc------------------hhheEeccccccCCCCCeeEEEEeCH
Confidence 984 68999999999999 88999999863
No 16
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=4.6e-25 Score=177.62 Aligned_cols=99 Identities=25% Similarity=0.516 Sum_probs=93.2
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...++||||+|++.++ .++.+..+||++++++|.+++++|++|+.+||||||++++|+|+|+|++||++|+|
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P 455 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFP 455 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCC
Confidence 4679999999999883 68899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
. +.++|+||+||+||. .+|.++.|+++
T Consensus 456 ~------------------s~~~yvqRiGRtGR~G~~G~ai~~~~~ 483 (545)
T PTZ00110 456 N------------------QIEDYVHRIGRTGRAGAKGASYTFLTP 483 (545)
T ss_pred C------------------CHHHHHHHhcccccCCCCceEEEEECc
Confidence 8 479999999999999 88999999874
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=3.6e-25 Score=174.90 Aligned_cols=101 Identities=20% Similarity=0.446 Sum_probs=93.8
Q ss_pred cCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 14 TFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
...++++||||+|++.++ .++.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||++|
T Consensus 239 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 239 HHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred hcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEec
Confidence 446778999999999883 789999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+|.+ ..+|+||+||+||. +.|.++.|+++
T Consensus 319 ~p~~------------------~~~yiqR~GRtGR~g~~G~ai~l~~~ 348 (460)
T PRK11776 319 LARD------------------PEVHVHRIGRTGRAGSKGLALSLVAP 348 (460)
T ss_pred CCCC------------------HhHhhhhcccccCCCCcceEEEEEch
Confidence 9984 68999999999999 78999999863
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.90 E-value=2.5e-24 Score=172.53 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=90.7
Q ss_pred CCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 17 PNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
.+++||||+|+..++ .++.+..+||+|++++|.+++++|+.|+.+|||||+++++|+|+|+|++||+||+|
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCC
Confidence 357999999998873 58899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
. +..+|+||+||+||. .+|.++.|++
T Consensus 447 ~------------------s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 447 N------------------TIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred C------------------CHHHHHHhccccccCCCCeEEEEEEc
Confidence 8 479999999999999 7899999986
No 19
>KOG0920|consensus
Probab=99.90 E-value=2.2e-24 Score=178.87 Aligned_cols=123 Identities=41% Similarity=0.573 Sum_probs=114.6
Q ss_pred cccccCCCCeEEEEeecCCCCC---------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccc
Q psy16353 10 SPHATFSPNISLLLCSSLNKPE---------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSIT 74 (132)
Q Consensus 10 ~~~~~~~~~~~ivF~~t~~~~~---------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gld 74 (132)
.++....++.+|||.+...+.. ..+.+.++|+.|+..+++.++...+.|.++||+|||+||.+|+
T Consensus 406 ~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSIT 485 (924)
T KOG0920|consen 406 YIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSIT 485 (924)
T ss_pred hcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhccc
Confidence 3445566899999999887762 3488999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 75 VPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 75 i~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+||-||||+|.-++..|||...++++...|+|+++..||+|||||.++|.||+||++
T Consensus 486 IdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~ 543 (924)
T KOG0920|consen 486 IDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTR 543 (924)
T ss_pred ccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeech
Confidence 9999999999999999999999999999999999999999999999999999999985
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=3.3e-24 Score=173.45 Aligned_cols=101 Identities=21% Similarity=0.416 Sum_probs=93.3
Q ss_pred ccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 13 ATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 13 ~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
......++||||+|++.++ .++.+..+||+|++.+|.++++.|++|+.+||||||++++|||+|+|++||+|
T Consensus 253 ~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIny 332 (572)
T PRK04537 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNY 332 (572)
T ss_pred hcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEc
Confidence 3345679999999999883 68899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|+|. +.++|+||+||+||. ..|.++.|++
T Consensus 333 d~P~------------------s~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 333 DLPF------------------DAEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred CCCC------------------CHHHHhhhhcccccCCCCceEEEEec
Confidence 9998 469999999999999 7899999875
No 21
>KOG0340|consensus
Probab=99.90 E-value=3.3e-24 Score=161.53 Aligned_cols=99 Identities=21% Similarity=0.456 Sum_probs=93.3
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+.++||+++...++ .++.+.++||.|++++|...+.+|+.+..++|||||+|+||+|||.|+.|||+|+|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diP 332 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIP 332 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCC
Confidence 5678999999999883 79999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
.+ +.+|+||+||++|. +.|.++.++++
T Consensus 333 r~------------------P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 333 RD------------------PKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred CC------------------HHHHHHhhcchhcccCCcceEEEech
Confidence 96 69999999999999 88999998874
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.90 E-value=3.1e-24 Score=169.57 Aligned_cols=99 Identities=18% Similarity=0.327 Sum_probs=91.8
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....++||||++++.++ .++.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|+|++||+|++
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC
Confidence 34578999999998873 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|.. ..+|+||+||+||. ..|.++.|++
T Consensus 323 P~~------------------~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 323 PNV------------------PEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred CCC------------------HHHhhhhccccccCCCCeeEEEEec
Confidence 984 68999999999999 7899998875
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=7.7e-24 Score=166.17 Aligned_cols=99 Identities=19% Similarity=0.367 Sum_probs=92.2
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....++||||++++.++ .++.+..+||+|++++|..+++.|++|+.+||||||++++|+|+|++++||++|+
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~ 322 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDM 322 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECC
Confidence 35689999999999883 7899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|. |...|+||+||+||. ..|.++.|++
T Consensus 323 p~------------------s~~~yiqr~GR~gR~g~~g~ai~l~~ 350 (434)
T PRK11192 323 PR------------------SADTYLHRIGRTGRAGRKGTAISLVE 350 (434)
T ss_pred CC------------------CHHHHhhcccccccCCCCceEEEEec
Confidence 98 479999999999999 7899998875
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=7.1e-24 Score=168.24 Aligned_cols=99 Identities=16% Similarity=0.309 Sum_probs=92.0
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....++||||++++.++ .++.+..+||++++++|.+++++|++|+.++|||||++++|+|+|++++||++|+
T Consensus 333 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 333 NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC
Confidence 34569999999999883 6789999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|. |..+|+||+||+||. ..|.++.|++
T Consensus 413 P~------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~ 440 (475)
T PRK01297 413 PE------------------DPDDYVHRIGRTGRAGASGVSISFAG 440 (475)
T ss_pred CC------------------CHHHHHHhhCccCCCCCCceEEEEec
Confidence 98 479999999999999 7899999876
No 25
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=8.1e-24 Score=167.81 Aligned_cols=98 Identities=24% Similarity=0.371 Sum_probs=91.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+.+||||+|++.++ .++.+..+||+|++++|.+++++|+.|+.+|||||+++++|+|+|+|++||++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 4456699999999983 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
. |.++|+||+||+||. .+|.|+.+|+
T Consensus 305 ~------------------s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 305 K------------------SMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred C------------------CHHHHHhhhcCcCCCCCCceEEEEec
Confidence 8 479999999999999 7999999986
No 26
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=1.3e-23 Score=171.13 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=92.9
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||+|++.++ .++.+..+||+|++++|.++++.|+.|+.+|||||+++++|+|+|+|++||++|+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 45678999999999883 7899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|. |.++|+||+||+||. .+|.|+.||+
T Consensus 314 P~------------------s~~~y~Qr~GRaGR~G~~~~~ill~~ 341 (607)
T PRK11057 314 PR------------------NIESYYQETGRAGRDGLPAEAMLFYD 341 (607)
T ss_pred CC------------------CHHHHHHHhhhccCCCCCceEEEEeC
Confidence 98 579999999999999 7899999986
No 27
>KOG0342|consensus
Probab=99.89 E-value=5.7e-24 Score=165.22 Aligned_cols=103 Identities=17% Similarity=0.298 Sum_probs=93.2
Q ss_pred ccccCCC-CeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEE
Q psy16353 11 PHATFSP-NISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 11 ~~~~~~~-~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
+.+.+.. .++||||+|+..+ ...++|..+||++++..|..++.+|+..+..||||||+++||+|+|+|++|
T Consensus 323 ~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~V 402 (543)
T KOG0342|consen 323 FLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWV 402 (543)
T ss_pred HHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEE
Confidence 3333433 8999999999888 378999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|++|.|.+ +.+|+||+||+||. ..|+++.|..
T Consensus 403 vQ~~~P~d------------------~~~YIHRvGRTaR~gk~G~alL~l~ 435 (543)
T KOG0342|consen 403 VQYDPPSD------------------PEQYIHRVGRTAREGKEGKALLLLA 435 (543)
T ss_pred EEeCCCCC------------------HHHHHHHhccccccCCCceEEEEeC
Confidence 99999997 69999999999999 7899887754
No 28
>KOG0332|consensus
Probab=99.89 E-value=3.6e-23 Score=156.83 Aligned_cols=104 Identities=25% Similarity=0.446 Sum_probs=94.8
Q ss_pred CCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
..-+++||||.|+..+ +.|..+..+||+|.-++|..+++.|++|+.+|||+||+.+||+|++.|++|||||+
T Consensus 328 ~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl 407 (477)
T KOG0332|consen 328 LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL 407 (477)
T ss_pred hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCC
Confidence 4567999999999988 48999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEE
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMV 130 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~ 130 (132)
|....=.| ..+.|+||+||+||+ +.|.+|.|+
T Consensus 408 P~~~~~~p------------D~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 408 PVKYTGEP------------DYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred ccccCCCC------------CHHHHHHHhcccccccccceEEEee
Confidence 98643333 579999999999999 889999876
No 29
>KOG0326|consensus
Probab=99.89 E-value=6.1e-24 Score=158.69 Aligned_cols=103 Identities=24% Similarity=0.454 Sum_probs=96.2
Q ss_pred ccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 11 PHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
++....-+++|||||+...++ .|+.|..+|+.|.++.|..++..|++|+.+.|||||++.||+|++.|++||
T Consensus 316 LfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 316 LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 445567889999999999884 899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|+|+|+. .++|.||+||.||. ..|.++.|+|
T Consensus 396 NFDfpk~------------------aEtYLHRIGRsGRFGhlGlAInLit 427 (459)
T KOG0326|consen 396 NFDFPKN------------------AETYLHRIGRSGRFGHLGLAINLIT 427 (459)
T ss_pred ecCCCCC------------------HHHHHHHccCCccCCCcceEEEEEe
Confidence 9999994 79999999999999 8999999986
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=2.2e-23 Score=170.14 Aligned_cols=99 Identities=19% Similarity=0.369 Sum_probs=92.2
Q ss_pred CCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....++||||+|+..+ ..++.+.++||+|++++|.+++++|+.|+.+|||||+++++|+|+|+|++||+||+
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 4567899999999887 37889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|.+ .++|+||+||+||. +.|.++.|++
T Consensus 323 P~~------------------~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 323 PMD------------------SESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred CCC------------------HHHHHHHhccccCCCCcceEEEEec
Confidence 984 69999999999999 7899999875
No 31
>PTZ00424 helicase 45; Provisional
Probab=99.89 E-value=1.6e-23 Score=162.38 Aligned_cols=100 Identities=22% Similarity=0.504 Sum_probs=92.5
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....++||||+|++.++ .++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 265 ~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 265 LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECC
Confidence 45578999999998873 6789999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. |..+|+||+||+||. ..|.|+.|+++
T Consensus 345 p~------------------s~~~y~qr~GRagR~g~~G~~i~l~~~ 373 (401)
T PTZ00424 345 PA------------------SPENYIHRIGRSGRFGRKGVAINFVTP 373 (401)
T ss_pred CC------------------CHHHEeecccccccCCCCceEEEEEcH
Confidence 97 579999999999999 78999999863
No 32
>KOG0925|consensus
Probab=99.89 E-value=1e-23 Score=164.30 Aligned_cols=120 Identities=33% Similarity=0.406 Sum_probs=109.8
Q ss_pred ccccccCCCCeEEEEeecCCCCC-----------------CCceEEEecCCCCHHHHHHHhhcCCCC-----ceEEEEec
Q psy16353 9 FSPHATFSPNISLLLCSSLNKPE-----------------VQWKIVVLHSSIPKEQQDLVFTRFPPG-----VRKIVLST 66 (132)
Q Consensus 9 ~~~~~~~~~~~~ivF~~t~~~~~-----------------~~~~~~~lh~~l~~~~r~~~~~~f~~g-----~~~vlvaT 66 (132)
+++|....+|.++||....++.+ ..+.+++|| +++++.+++..++. .++|+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 56778888999999998877762 678999999 77788888887643 47999999
Q ss_pred cccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 67 NIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 67 ~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
++||..+++++|.+|||.|+.++.+|||+.++.++...+||++++.||+||+||.+||+||+|||+
T Consensus 321 niaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte 386 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 386 (699)
T ss_pred cchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecH
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=2.6e-23 Score=175.41 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=91.9
Q ss_pred CCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCc
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTK 88 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~ 88 (132)
...+||||+|+++++ .++.+.++||+|++++|..++++|..|+.+|||||+++++|||+|+|++||++|+|.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC
Confidence 457899999999984 789999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 89 VLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|.+.|+||+|||||. .+|.|+.||+
T Consensus 760 ------------------SiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 760 ------------------SIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred ------------------CHHHHHhhhcccCCCCCCceEEEEec
Confidence 579999999999999 7999999986
No 34
>KOG0926|consensus
Probab=99.88 E-value=2.5e-23 Score=169.12 Aligned_cols=100 Identities=37% Similarity=0.567 Sum_probs=98.1
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhH
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSC 111 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~ 111 (132)
..+.|+|||+-|+.+.+.++|+..+.|.+-++||||+||.+++||+|+||||+|..++..||..+|+++-...|||+++.
T Consensus 603 ~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASa 682 (1172)
T KOG0926|consen 603 GPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASA 682 (1172)
T ss_pred CceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCceEEEEEe
Q psy16353 112 QQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 112 ~qR~GR~gR~~~g~~~~l~s 131 (132)
-||+|||||.+||+||+|||
T Consensus 683 dQRAGRAGRtgpGHcYRLYS 702 (1172)
T KOG0926|consen 683 DQRAGRAGRTGPGHCYRLYS 702 (1172)
T ss_pred chhccccCCCCCCceeehhh
Confidence 99999999999999999997
No 35
>KOG0336|consensus
Probab=99.88 E-value=1.3e-22 Score=155.64 Aligned_cols=99 Identities=21% Similarity=0.390 Sum_probs=92.7
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
+..++||||..+..++ .++.+.+|||+-.+.+|+..++.|+.|+.++|||||+++||+|+|||.||+|||+|
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP 543 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFP 543 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCC
Confidence 5679999999988774 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
.+ .++|+||+||+||. +.|..+.++++
T Consensus 544 ~n------------------IeeYVHRvGrtGRaGr~G~sis~lt~ 571 (629)
T KOG0336|consen 544 RN------------------IEEYVHRVGRTGRAGRTGTSISFLTR 571 (629)
T ss_pred cc------------------HHHHHHHhcccccCCCCcceEEEEeh
Confidence 96 69999999999999 89999998874
No 36
>KOG0335|consensus
Probab=99.87 E-value=1.1e-22 Score=158.87 Aligned_cols=96 Identities=20% Similarity=0.403 Sum_probs=90.9
Q ss_pred CeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCce
Q psy16353 18 NISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKV 89 (132)
Q Consensus 18 ~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~ 89 (132)
.+++|||+|++.+. .++++.++||+..+.+|.+.+..|+.|+..+||||++++||+|+|+|++||+||+|.+
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d 417 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPAD 417 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcc
Confidence 38999999999993 8999999999999999999999999999999999999999999999999999999997
Q ss_pred eeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 90 LTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 90 ~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
..+|+||+||+||. ..|.+..|+.
T Consensus 418 ------------------~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 418 ------------------IDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred ------------------hhhHHHhccccccCCCCceeEEEec
Confidence 48999999999999 7899988875
No 37
>KOG0345|consensus
Probab=99.87 E-value=1.4e-22 Score=157.09 Aligned_cols=103 Identities=19% Similarity=0.327 Sum_probs=93.7
Q ss_pred ccccCCCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccE
Q psy16353 11 PHATFSPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~ 80 (132)
+......+++|||++|+..++ ....+.++||.|.+.+|.+++++|......+++|||+|+||+|||+|++
T Consensus 249 ~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~ 328 (567)
T KOG0345|consen 249 LLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDL 328 (567)
T ss_pred HHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceE
Confidence 344467789999999999884 7889999999999999999999999988899999999999999999999
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
||++|+|.+ ++.++||+||+||. +.|.++.|..
T Consensus 329 VvQ~DpP~~------------------~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 329 VVQFDPPKD------------------PSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred EEecCCCCC------------------hhHHHhhcchhhhccCccceEEEec
Confidence 999999997 58999999999999 8899887753
No 38
>KOG0341|consensus
Probab=99.86 E-value=4.6e-22 Score=151.91 Aligned_cols=99 Identities=17% Similarity=0.388 Sum_probs=92.8
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...+++|||..+.+++ .|+.++++||+.++++|...+++|+.|+.+||||||+|+.|+|+|++.||||||.|
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 4567999999999884 89999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
.+ .++|+||+||+||. ..|.+.+|+.|
T Consensus 500 ~e------------------IENYVHRIGRTGRsg~~GiATTfINK 527 (610)
T KOG0341|consen 500 EE------------------IENYVHRIGRTGRSGKTGIATTFINK 527 (610)
T ss_pred HH------------------HHHHHHHhcccCCCCCcceeeeeecc
Confidence 97 69999999999999 78999888764
No 39
>KOG0343|consensus
Probab=99.86 E-value=3.4e-22 Score=157.54 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=100.6
Q ss_pred CcccccccCCCCeEEEEeecCCCC----------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC
Q psy16353 7 GTFSPHATFSPNISLLLCSSLNKP----------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP 76 (132)
Q Consensus 7 ~~~~~~~~~~~~~~ivF~~t~~~~----------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~ 76 (132)
-++++.+++...+.|||++|++++ .+|+++.+|||.|.+..|.+++.+|-..+.-||.|||+++||+|+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 367888889999999999999998 3999999999999999999999999998889999999999999999
Q ss_pred CccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 77 DVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 77 ~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
.|++||++|.|.+ ..+|+||+||++|. ..|.++.++++
T Consensus 383 aVdwViQ~DCPed------------------v~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 383 AVDWVIQVDCPED------------------VDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred ccceEEEecCchh------------------HHHHHHHhhhhhcccCCCceEEEEcc
Confidence 9999999999996 69999999999999 88999887763
No 40
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.86 E-value=3.8e-22 Score=165.40 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=89.4
Q ss_pred CCCeEEEEeecCCCCC----------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc
Q psy16353 16 SPNISLLLCSSLNKPE----------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~ 79 (132)
...++||||+|++.++ .+..+..+||++++++|.+++++|++|+.++|||||++++|||+++++
T Consensus 270 ~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd 349 (742)
T TIGR03817 270 EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLD 349 (742)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCccccc
Confidence 3579999999999884 146788999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+||++|+|. +.++|+||+||+||. +.|.++.+.+
T Consensus 350 ~VI~~~~P~------------------s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 350 AVVIAGFPG------------------TRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred EEEEeCCCC------------------CHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999998 479999999999999 7899887764
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.86 E-value=5.6e-22 Score=161.03 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=91.5
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...++||||+|++.++ .++.+.++||+|++++|..+++.|..|+.+|||||+++++|+|+|+|++||++++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 3578999999999883 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
. |.++|.||+||+||. .+|.|+.+|+
T Consensus 303 ~------------------s~~~y~Q~~GRaGR~G~~~~~il~~~ 329 (591)
T TIGR01389 303 G------------------NLESYYQEAGRAGRDGLPAEAILLYS 329 (591)
T ss_pred C------------------CHHHHhhhhccccCCCCCceEEEecC
Confidence 8 479999999999999 6899998875
No 42
>KOG0338|consensus
Probab=99.86 E-value=2.2e-22 Score=157.43 Aligned_cols=98 Identities=19% Similarity=0.365 Sum_probs=92.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
-..++|||+.|++.+. .|+++..|||+|++++|.+.+..|+.++..+|||||+|+||+||++|..||||..|
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCc
Confidence 3678999999999994 79999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
. +...|+||+||+.|. +.|..+.|+.
T Consensus 505 ~------------------t~e~Y~HRVGRTARAGRaGrsVtlvg 531 (691)
T KOG0338|consen 505 K------------------TIEHYLHRVGRTARAGRAGRSVTLVG 531 (691)
T ss_pred h------------------hHHHHHHHhhhhhhcccCcceEEEec
Confidence 8 479999999999999 8999999875
No 43
>KOG0347|consensus
Probab=99.85 E-value=2.3e-22 Score=158.41 Aligned_cols=109 Identities=21% Similarity=0.360 Sum_probs=96.6
Q ss_pred CCCcccccccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC
Q psy16353 5 KPGTFSPHATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP 76 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~ 76 (132)
|.-.+..+-+.-||++|||||+...+ ..++...+||+.|.+.+|.+.+++|++....||||||+|+||+|||
T Consensus 451 KD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp 530 (731)
T KOG0347|consen 451 KDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP 530 (731)
T ss_pred cceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC
Confidence 33344444556799999999999877 3788899999999999999999999999999999999999999999
Q ss_pred CccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 77 DVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 77 ~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+|.|||+|-+|.. .+.|+||.||++|+ ..|....|+.
T Consensus 531 ~V~HVIHYqVPrt------------------seiYVHRSGRTARA~~~Gvsvml~~ 568 (731)
T KOG0347|consen 531 GVQHVIHYQVPRT------------------SEIYVHRSGRTARANSEGVSVMLCG 568 (731)
T ss_pred CcceEEEeecCCc------------------cceeEecccccccccCCCeEEEEeC
Confidence 9999999999984 58999999999999 7898887764
No 44
>KOG0344|consensus
Probab=99.83 E-value=6.3e-21 Score=150.72 Aligned_cols=99 Identities=22% Similarity=0.364 Sum_probs=92.3
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
-+..++||+.+.+.+. .++++..+||..++.+|.+.+++|+.|+..+|+||++++||+|+-+++.|||||+
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 4567899999998883 6788999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. |.-+|+||+||+||. ++|++|.|||.
T Consensus 466 p~------------------s~~syihrIGRtgRag~~g~Aitfytd 494 (593)
T KOG0344|consen 466 PQ------------------SDLSYIHRIGRTGRAGRSGKAITFYTD 494 (593)
T ss_pred Cc------------------hhHHHHHHhhccCCCCCCcceEEEecc
Confidence 98 468999999999999 89999999984
No 45
>KOG0348|consensus
Probab=99.83 E-value=7.6e-21 Score=149.49 Aligned_cols=102 Identities=24% Similarity=0.377 Sum_probs=90.5
Q ss_pred cccCCCCeEEEEeecCCCCC------------------------------CCceEEEecCCCCHHHHHHHhhcCCCCceE
Q psy16353 12 HATFSPNISLLLCSSLNKPE------------------------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRK 61 (132)
Q Consensus 12 ~~~~~~~~~ivF~~t~~~~~------------------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~ 61 (132)
.+.....++|||+++.+.++ .+.++.-|||+|.+++|..+|+.|......
T Consensus 420 ~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~ 499 (708)
T KOG0348|consen 420 VKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA 499 (708)
T ss_pred hhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce
Confidence 34445668999999998872 467788999999999999999999999999
Q ss_pred EEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 62 IVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 62 vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
||+|||+|+||+|+|+|++||+||.|. |.++|+||+||++|. ..|.++.+..
T Consensus 500 VLLcTDVAaRGLDlP~V~~vVQYd~P~------------------s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVGLVVQYDPPF------------------STADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred EEEehhhhhccCCCCCcCeEEEeCCCC------------------CHHHHHHHhhhhhhccCCCceEEEec
Confidence 999999999999999999999999998 579999999999999 7788776653
No 46
>KOG0349|consensus
Probab=99.83 E-value=1.8e-20 Score=144.92 Aligned_cols=100 Identities=17% Similarity=0.369 Sum_probs=93.5
Q ss_pred ccCCCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEE
Q psy16353 13 ATFSPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 13 ~~~~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
+.+...++|+||.|+.+++ ..+.|+++||+..+.||++.++.|+.+..+.|||||+|+||+||.++-++
T Consensus 501 ~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 501 RRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred hhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceE
Confidence 3467889999999999994 57999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEE
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMV 130 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~ 130 (132)
||..+|.+ +.+|+||+||+||. +-|.++.|+
T Consensus 581 invtlpd~------------------k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 581 INVTLPDD------------------KTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred EEEecCcc------------------cchhhhhhhccchhhhcceeEEEe
Confidence 99999986 58999999999999 899999886
No 47
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=3.5e-20 Score=148.74 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=93.6
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+..||||.|++.++ .|+.+..+|++|+.++|..+.++|..++.+|+|||..+.+|||-|||++||++++
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 34556899999999994 7899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. |.++|.|-+|||||. .+..|+.||+.
T Consensus 308 P~------------------s~EsYyQE~GRAGRDG~~a~aill~~~ 336 (590)
T COG0514 308 PG------------------SIESYYQETGRAGRDGLPAEAILLYSP 336 (590)
T ss_pred CC------------------CHHHHHHHHhhccCCCCcceEEEeecc
Confidence 99 579999999999999 89999999973
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.82 E-value=3.4e-20 Score=156.19 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=90.0
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..+++++||++++.++ +++++..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||.++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 5679999999988762 578999999999999999999999999999999999999999999999999988
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
.+.. +.++|.||+||+||. ++|.||.|++
T Consensus 739 a~~~-----------------gls~l~Qr~GRvGR~g~~g~aill~~ 768 (926)
T TIGR00580 739 ADKF-----------------GLAQLYQLRGRVGRSKKKAYAYLLYP 768 (926)
T ss_pred CCCC-----------------CHHHHHHHhcCCCCCCCCeEEEEEEC
Confidence 8753 357899999999999 8999999985
No 49
>KOG0350|consensus
Probab=99.81 E-value=1.7e-20 Score=146.51 Aligned_cols=107 Identities=16% Similarity=0.327 Sum_probs=96.9
Q ss_pred cccccccCCCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccccccccc
Q psy16353 8 TFSPHATFSPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITV 75 (132)
Q Consensus 8 ~~~~~~~~~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi 75 (132)
.+.+.+..+..++|+|+++.+.+ ..++++.++.|+++...|.+.+.+|..|+.++|||||+++||+|+
T Consensus 420 ~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv 499 (620)
T KOG0350|consen 420 VYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDV 499 (620)
T ss_pred HHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcc
Confidence 34556667888999999998887 367788889999999999999999999999999999999999999
Q ss_pred CCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 76 PDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 76 ~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
.+|+.|||||.|.. ..+|+||+||++|+ +.|.||.|.++
T Consensus 500 ~~v~~VINYd~P~~------------------~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 500 NDVDNVINYDPPAS------------------DKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred cccceEeecCCCch------------------hhHHHHhhcccccccCCceEEEeecc
Confidence 99999999999984 68999999999999 89999998763
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.80 E-value=2e-19 Score=148.16 Aligned_cols=99 Identities=20% Similarity=0.369 Sum_probs=88.0
Q ss_pred CCCeEEEEeecCCCCC------------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~ 77 (132)
...+++|||++.+..+ .++.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 4679999999765431 2578999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 78 VKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 78 v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+++||+++.|.. ..+++.||+||+||. .+|.|+.+++
T Consensus 550 v~~VIi~~~~r~-----------------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 550 ATVMVIENAERF-----------------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CcEEEEeCCCCC-----------------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999998864 257899999999999 7999999874
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.80 E-value=9.3e-20 Score=153.51 Aligned_cols=88 Identities=27% Similarity=0.272 Sum_probs=81.1
Q ss_pred CCCeEEEEeecCCCCC--------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEE
Q psy16353 16 SPNISLLLCSSLNKPE--------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
..+++||||||++.++ .+..+..+||+|++++|..++++|++|+.++||||+.+++|+|+|++++|
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 3578999999998873 13679999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
|++|.|. |.++|+||+||+||.
T Consensus 363 I~~~~P~------------------sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 363 VLLGSPK------------------SVSRLLQRIGRAGHR 384 (876)
T ss_pred EEeCCCC------------------CHHHHHHhcccCCCC
Confidence 9999998 479999999999987
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-19 Score=141.25 Aligned_cols=101 Identities=23% Similarity=0.387 Sum_probs=87.2
Q ss_pred cCCCCeEEEEeecCCCCC--------CCceEE-Eec--------CCCCHHHHHHHhhcCCCCceEEEEeccccccccccC
Q psy16353 14 TFSPNISLLLCSSLNKPE--------VQWKIV-VLH--------SSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP 76 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~--------~~~~~~-~lh--------~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~ 76 (132)
.....++|||++.+..++ .+..+. -+. .+|++.+|.+++++|+.|..+|||||+++|.|+|+|
T Consensus 363 k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp 442 (542)
T COG1111 363 KNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIP 442 (542)
T ss_pred cCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCC
Confidence 345689999999999884 333332 333 369999999999999999999999999999999999
Q ss_pred CccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 77 DVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 77 ~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
++++||-|+... |+-.++||.||+||.++|.++.|+++
T Consensus 443 ~vDlVifYEpvp------------------SeIR~IQR~GRTGR~r~Grv~vLvt~ 480 (542)
T COG1111 443 EVDLVIFYEPVP------------------SEIRSIQRKGRTGRKRKGRVVVLVTE 480 (542)
T ss_pred cccEEEEecCCc------------------HHHHHHHhhCccccCCCCeEEEEEec
Confidence 999999998765 57889999999999999999999875
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.80 E-value=6e-20 Score=157.39 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=85.1
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..++++||||+++.++ +++.+..+||+|++++|.+++.+|++|+.+|||||+++++|+|+|++++||..+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 4579999999987652 478899999999999999999999999999999999999999999999999433
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
...- ..++|.||+||+||. ..|.||.+++
T Consensus 888 ad~f-----------------glaq~~Qr~GRvGR~g~~g~a~ll~~ 917 (1147)
T PRK10689 888 ADHF-----------------GLAQLHQLRGRVGRSHHQAYAWLLTP 917 (1147)
T ss_pred CCCC-----------------CHHHHHHHhhccCCCCCceEEEEEeC
Confidence 2210 135799999999999 8899998874
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.79 E-value=3.5e-19 Score=145.76 Aligned_cols=98 Identities=19% Similarity=0.338 Sum_probs=87.8
Q ss_pred CCCeEEEEeecCCCCC------------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~ 77 (132)
...+++|||++.+..+ .++.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 4678999998875421 4778999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEE
Q psy16353 78 VKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMV 130 (132)
Q Consensus 78 v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~ 130 (132)
+++||+++.|.. +.+++.||+||+||. .+|.|+.++
T Consensus 527 v~~VIi~~~~r~-----------------gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 527 ATVMVIEDAERF-----------------GLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CcEEEEeCCCcC-----------------CHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999998864 357899999999999 799999987
No 55
>KOG0327|consensus
Probab=99.79 E-value=1.2e-19 Score=137.74 Aligned_cols=98 Identities=21% Similarity=0.481 Sum_probs=92.9
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...++++||||++.+. .++.+.++||+|.+.+|..++..|+.|..+|||+|++++||+|+..+..||||++|
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccc
Confidence 5678999999999983 79999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
.+ +++|+||+||+||. .+|.++++++
T Consensus 342 ~~------------------~~~yihR~gr~gr~grkg~~in~v~ 368 (397)
T KOG0327|consen 342 AR------------------KENYIHRIGRAGRFGRKGVAINFVT 368 (397)
T ss_pred cc------------------hhhhhhhcccccccCCCceeeeeeh
Confidence 86 69999999999999 8999998876
No 56
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=3e-19 Score=109.22 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=68.9
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhH
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSC 111 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~ 111 (132)
.++.+..+||++++++|.++++.|..+..++|+||+++++|+|+|++++||.++.|. |..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHH
Confidence 578999999999999999999999999999999999999999999999999999987 47999
Q ss_pred HHhhcccCCC
Q psy16353 112 QQRAGRVGRV 121 (132)
Q Consensus 112 ~qR~GR~gR~ 121 (132)
.|++||++|.
T Consensus 68 ~Q~~GR~~R~ 77 (78)
T PF00271_consen 68 IQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSTT
T ss_pred HHHhhcCCCC
Confidence 9999999996
No 57
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.78 E-value=7.1e-19 Score=144.12 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=90.0
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC--
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC-- 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~-- 85 (132)
...+++|||+|++.++ .++.+..+||++++.+|.+++++|+.|+..|+|||+++++|+|+|++++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 4678999999999883 689999999999999999999999999999999999999999999999999887
Q ss_pred ---CCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEe
Q psy16353 86 ---LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 86 ---~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s 131 (132)
+|. +..+|+||+||+||..+|+++.++.
T Consensus 521 ifG~p~------------------~~~~~iqriGRagR~~~G~vi~~~~ 551 (655)
T TIGR00631 521 KEGFLR------------------SERSLIQTIGRAARNVNGKVIMYAD 551 (655)
T ss_pred cccCCC------------------CHHHHHHHhcCCCCCCCCEEEEEEc
Confidence 565 4689999999999999999988865
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.77 E-value=3e-19 Score=155.00 Aligned_cols=69 Identities=28% Similarity=0.315 Sum_probs=65.8
Q ss_pred EEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhh
Q psy16353 36 IVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRA 115 (132)
Q Consensus 36 ~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~ 115 (132)
+..+||+|++++|..+.+.|++|+.++||||+.+++|||+++|++||++|.|. |.++|+||+
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~------------------sVas~LQRi 365 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL------------------SVASGLQRI 365 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC------------------CHHHHHHHh
Confidence 56899999999999999999999999999999999999999999999999998 579999999
Q ss_pred cccCCCC
Q psy16353 116 GRVGRVS 122 (132)
Q Consensus 116 GR~gR~~ 122 (132)
||+||..
T Consensus 366 GRAGR~~ 372 (1490)
T PRK09751 366 GRAGHQV 372 (1490)
T ss_pred CCCCCCC
Confidence 9999973
No 59
>KOG0339|consensus
Probab=99.75 E-value=1.6e-18 Score=135.95 Aligned_cols=101 Identities=22% Similarity=0.448 Sum_probs=93.7
Q ss_pred cCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 14 TFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
....+++|+|+..+..++ .++++..+||+|.+.+|.+++..|+.+...|+|+||++.+|+||+++..|||||
T Consensus 465 f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD 544 (731)
T KOG0339|consen 465 FSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYD 544 (731)
T ss_pred hccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeeccc
Confidence 346789999998887774 899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+..+ ...|.||+||+||. ..|.+|+|+|+
T Consensus 545 ~ard------------------IdththrigrtgRag~kGvayTlvTe 574 (731)
T KOG0339|consen 545 FARD------------------IDTHTHRIGRTGRAGEKGVAYTLVTE 574 (731)
T ss_pred ccch------------------hHHHHHHhhhcccccccceeeEEech
Confidence 9985 69999999999999 78999999984
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.75 E-value=3.6e-18 Score=130.90 Aligned_cols=85 Identities=15% Similarity=0.300 Sum_probs=74.3
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHH----HhhcCCCCceEEEEeccccccccccCCccEE
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDL----VFTRFPPGVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~----~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
.++++||||+|++.++ .+..+..+||++++.+|.+ +++.|+.|+.++||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 5789999999999873 2346999999999999876 48899999999999999999999995 7888
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
|++..| .++|+||+||+||.
T Consensus 300 i~~~~~--------------------~~~~iqr~GR~gR~ 319 (358)
T TIGR01587 300 ITELAP--------------------IDSLIQRLGRLHRY 319 (358)
T ss_pred EEcCCC--------------------HHHHHHHhccccCC
Confidence 888766 37899999999997
No 61
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.75 E-value=2.2e-18 Score=145.38 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=86.1
Q ss_pred ccccCCCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCC--ceEEEEeccccccccccCCcc
Q psy16353 11 PHATFSPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPG--VRKIVLSTNIAESSITVPDVK 79 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g--~~~vlvaT~~~~~Gldi~~v~ 79 (132)
+.+...+.++||||++++.+. .|+.+..+||+|++.+|.++++.|+.+ ..+|||||+++++|+|++.++
T Consensus 487 ~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~ 566 (956)
T PRK04914 487 FLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFAS 566 (956)
T ss_pred HHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCccccc
Confidence 334455789999999998882 589999999999999999999999874 589999999999999999999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCce
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGR 125 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~ 125 (132)
+||+||+|.+ +..|+||+||++|. +.+.
T Consensus 567 ~VInfDlP~n------------------P~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 567 HLVLFDLPFN------------------PDLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred EEEEecCCCC------------------HHHHHHHhcccccCCCCce
Confidence 9999999985 69999999999999 5554
No 62
>KOG0354|consensus
Probab=99.75 E-value=2e-18 Score=140.72 Aligned_cols=99 Identities=16% Similarity=0.333 Sum_probs=87.2
Q ss_pred cCCCCeEEEEeecCCCCC-----------CCceEEEecC--------CCCHHHHHHHhhcCCCCceEEEEeccccccccc
Q psy16353 14 TFSPNISLLLCSSLNKPE-----------VQWKIVVLHS--------SIPKEQQDLVFTRFPPGVRKIVLSTNIAESSIT 74 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~-----------~~~~~~~lh~--------~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gld 74 (132)
.....++||||.+++.+. .+++...+-| +|+++++++++++|+.|+.++||||+++|.|+|
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLD 489 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLD 489 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCC
Confidence 457789999999998882 3444444443 699999999999999999999999999999999
Q ss_pred cCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEe
Q psy16353 75 VPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 75 i~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s 131 (132)
|+.|+.||=||... ++-.++||+|| ||...|+|+.|++
T Consensus 490 I~ec~lVIcYd~~s------------------npIrmIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 490 IGECNLVICYDYSS------------------NPIRMVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred cccccEEEEecCCc------------------cHHHHHHHhcc-ccccCCeEEEEEc
Confidence 99999999999887 46899999999 9999999999886
No 63
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.75 E-value=3.9e-18 Score=140.01 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=90.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...+++|||+|++.++ .++++..+||++++.+|.++++.|+.|+..++|||+++++|+|+|++++||+++.+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999998883 78999999999999999999999999999999999999999999999999988864
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s 131 (132)
... -+.+..+|+||+||+||...|.++.+++
T Consensus 525 ifG-------------~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 525 KEG-------------FLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred ccc-------------cCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 210 0014689999999999999999998875
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.8e-18 Score=138.93 Aligned_cols=95 Identities=22% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC---Ccc-----E
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP---DVK-----Y 80 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~---~v~-----~ 80 (132)
+..+||||+|++.++ .++++..|||++++.++..+..++ ++..|+||||+|+||+||+ +|. +
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAG--QRGRITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcC--CCCcEEEEccchhcccCcCCccchhhcCCCE
Confidence 567999999999884 799999999997766655544444 4457999999999999999 776 9
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
||++++|. |...|.||+||+||. .+|.++.+++
T Consensus 551 VI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is 584 (656)
T PRK12898 551 VILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILS 584 (656)
T ss_pred EEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEec
Confidence 99999998 468999999999999 7999999886
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=4.8e-18 Score=140.77 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=87.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccccccccc---CCcc-----
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITV---PDVK----- 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi---~~v~----- 79 (132)
...++||||+|++.++ .++++..+||++.++++..+..++..| +|+||||+|+||+|+ |+|.
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCc
Confidence 5778999999999883 799999999999999988888888766 799999999999999 7999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+||++++|. |...|.||+||+||. .+|.+..+++
T Consensus 505 ~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is 539 (790)
T PRK09200 505 AVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFIS 539 (790)
T ss_pred EEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEc
Confidence 999999998 468999999999999 7999998876
No 66
>PRK13766 Hef nuclease; Provisional
Probab=99.74 E-value=7e-18 Score=140.63 Aligned_cols=100 Identities=24% Similarity=0.387 Sum_probs=90.9
Q ss_pred CCCCeEEEEeecCCCC--------CCCceEEEecCC--------CCHHHHHHHhhcCCCCceEEEEeccccccccccCCc
Q psy16353 15 FSPNISLLLCSSLNKP--------EVQWKIVVLHSS--------IPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDV 78 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~--------l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v 78 (132)
....++||||+++..+ ..++.+..+||. |++.+|.+++++|+.|+.++||||+++++|+|+|++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 4678999999998877 367888899886 999999999999999999999999999999999999
Q ss_pred cEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 79 KYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 79 ~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
++||+||.|. +...|+||+||+||.++|.+|.|+++
T Consensus 443 ~~VI~yd~~~------------------s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 443 DLVIFYEPVP------------------SEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred CEEEEeCCCC------------------CHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 9999999987 46899999999999999999999864
No 67
>KOG4284|consensus
Probab=99.73 E-value=4e-18 Score=136.86 Aligned_cols=104 Identities=17% Similarity=0.327 Sum_probs=95.0
Q ss_pred ccccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccE
Q psy16353 9 FSPHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80 (132)
Q Consensus 9 ~~~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~ 80 (132)
-.+++...-.++||||+....++ .|+.|.++.|.|++.+|..+++.++.-..+|||+||+.+||||-++|+.
T Consensus 264 ~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNL 343 (980)
T KOG4284|consen 264 THVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNL 343 (980)
T ss_pred HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccce
Confidence 34555667779999999998884 8999999999999999999999999989999999999999999999999
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEE
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMV 130 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~ 130 (132)
|||.|.|.+ ..+|.||+|||||+ ..|.+++|+
T Consensus 344 VVNiD~p~d------------------~eTY~HRIGRAgRFG~~G~aVT~~ 376 (980)
T KOG4284|consen 344 VVNIDAPAD------------------EETYFHRIGRAGRFGAHGAAVTLL 376 (980)
T ss_pred EEecCCCcc------------------hHHHHHHhhhcccccccceeEEEe
Confidence 999999986 69999999999999 789988876
No 68
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=3.2e-17 Score=108.07 Aligned_cols=95 Identities=27% Similarity=0.455 Sum_probs=86.1
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||++...++ .+..+..+||+++++++..+++.|..+..+++++|+.+++|+|+|++++||.++.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP 106 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCC
Confidence 4679999999988762 57889999999999999999999999999999999999999999999999999988
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEE
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYY 128 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~ 128 (132)
. +..+++|++||++|. +.|.++.
T Consensus 107 ~------------------~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 107 W------------------SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred C------------------CHHHheecccccccCCCCceEEe
Confidence 7 468999999999999 5777764
No 69
>KOG0346|consensus
Probab=99.69 E-value=2.7e-17 Score=127.21 Aligned_cols=98 Identities=22% Similarity=0.392 Sum_probs=90.1
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-------------------
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI------------------- 68 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~------------------- 68 (132)
-.+++|||+||...+ ..|++...|+|.||.+.|..++++|..|-+.++||||.
T Consensus 267 I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 267 IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccC
Confidence 468999999999998 37999999999999999999999999999999999991
Q ss_pred ----------------cccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 69 ----------------AESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 69 ----------------~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
..||||+.+|..|+|+|+|.+ ..+|+||+||++|. .+|.+..|++
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t------------------~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPET------------------VTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCc------------------hHHHHHhccccccCCCCCceEEEec
Confidence 238999999999999999995 69999999999999 8999998875
No 70
>PRK02362 ski2-like helicase; Provisional
Probab=99.68 E-value=5e-17 Score=135.09 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=72.7
Q ss_pred eEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHh
Q psy16353 35 KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQR 114 (132)
Q Consensus 35 ~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR 114 (132)
.+..+||+|++++|..+.+.|++|..+|||||+.+++|+|+|.+++||+.- ..|++..+ ..+.+..+|.||
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~----~~yd~~~g-----~~~~s~~~y~Qm 375 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDY----RRYDGGAG-----MQPIPVLEYHQM 375 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecc----eeecCCCC-----ceeCCHHHHHHH
Confidence 577899999999999999999999999999999999999999999999631 12333211 245688999999
Q ss_pred hcccCCCC---CceEEEEEe
Q psy16353 115 AGRVGRVS---EGRVYYMVT 131 (132)
Q Consensus 115 ~GR~gR~~---~g~~~~l~s 131 (132)
+|||||.+ .|.++.+..
T Consensus 376 ~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 376 AGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred hhcCCCCCCCCCceEEEEec
Confidence 99999983 488888763
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.68 E-value=1.1e-16 Score=132.07 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=85.6
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC---------C
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP---------D 77 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~---------~ 77 (132)
....++||||+|++.++ .++++..+||++.++++..+.++++.| .|+||||+|+||+||+ +
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GG 499 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGG 499 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCC
Confidence 35678999999998873 789999999999999998888888776 7999999999999999 9
Q ss_pred ccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 78 VKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 78 v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+.+|++++.|.. ....||+||+||. .+|.++.+++
T Consensus 500 L~vIit~~~ps~-------------------rid~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 500 LAVIGTERMENS-------------------RVDLQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred eEEEEecCCCCc-------------------HHHHHhhhcccCCCCceeEEEEEc
Confidence 999999999974 3449999999999 8999998876
No 72
>PRK00254 ski2-like helicase; Provisional
Probab=99.68 E-value=5.7e-17 Score=134.50 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=69.7
Q ss_pred eEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHh
Q psy16353 35 KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQR 114 (132)
Q Consensus 35 ~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR 114 (132)
.+..+||+|++++|..+.+.|++|..+|||||+.+++|+|+|.+++||.... .|+. . .....+..+|.||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~----~~~~-~-----~~~~~~~~~~~Qm 366 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTK----RYSN-F-----GWEDIPVLEIQQM 366 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCce----EcCC-C-----CceeCCHHHHHHh
Confidence 4889999999999999999999999999999999999999999999994221 1110 0 1112356899999
Q ss_pred hcccCCC---CCceEEEEEe
Q psy16353 115 AGRVGRV---SEGRVYYMVT 131 (132)
Q Consensus 115 ~GR~gR~---~~g~~~~l~s 131 (132)
+|||||. ..|.++.+.+
T Consensus 367 ~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 367 MGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred hhccCCCCcCCCceEEEEec
Confidence 9999996 4688887754
No 73
>KOG0334|consensus
Probab=99.67 E-value=9.1e-17 Score=133.78 Aligned_cols=98 Identities=17% Similarity=0.380 Sum_probs=92.0
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
+..++||||.+.+.+ +.++++..|||+.++.+|..++..|+++..++||||+++++|+|+.++..||||++|
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccc
Confidence 478999999999988 379999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
.. -+.|+||+||+||. +.|.|+.|.+
T Consensus 692 nh------------------~edyvhR~gRTgragrkg~AvtFi~ 718 (997)
T KOG0334|consen 692 NH------------------YEDYVHRVGRTGRAGRKGAAVTFIT 718 (997)
T ss_pred hh------------------HHHHHHHhcccccCCccceeEEEeC
Confidence 86 48899999999999 8899999876
No 74
>PRK01172 ski2-like helicase; Provisional
Probab=99.67 E-value=1.8e-16 Score=130.60 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=82.6
Q ss_pred CCCeEEEEeecCCCCC-------------CC--------------------ceEEEecCCCCHHHHHHHhhcCCCCceEE
Q psy16353 16 SPNISLLLCSSLNKPE-------------VQ--------------------WKIVVLHSSIPKEQQDLVFTRFPPGVRKI 62 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-------------~~--------------------~~~~~lh~~l~~~~r~~~~~~f~~g~~~v 62 (132)
..+++||||+|+++++ .. ..+..+||+|++++|..+++.|++|..+|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 4679999999998772 01 13677899999999999999999999999
Q ss_pred EEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC---CceEEEEE
Q psy16353 63 VLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS---EGRVYYMV 130 (132)
Q Consensus 63 lvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~---~g~~~~l~ 130 (132)
||||+++++|+|+|+..+|| .|.+. |+. ....++|..+|.||+|||||.+ .|.++.+.
T Consensus 315 LvaT~~la~Gvnipa~~VII-~~~~~---~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 315 IVATPTLAAGVNLPARLVIV-RDITR---YGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred EEecchhhccCCCcceEEEE-cCceE---eCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 99999999999999876555 45443 211 1224578999999999999984 56666553
No 75
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.67 E-value=1.3e-16 Score=132.70 Aligned_cols=83 Identities=25% Similarity=0.407 Sum_probs=71.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHH-----HHhhcCCC----Cc-------eEEEEecccccc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQD-----LVFTRFPP----GV-------RKIVLSTNIAES 71 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~-----~~~~~f~~----g~-------~~vlvaT~~~~~ 71 (132)
..+++||||||++.++ .++ ..+||+|++.+|. +++++|++ |+ .+|||||+++|+
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 4678999999999983 344 8999999999999 78899976 43 689999999999
Q ss_pred ccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 72 SITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 72 Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
|+||+. ++||++..| .++|+||+||+||.
T Consensus 349 GLDId~-d~VI~d~aP--------------------~esyIQRiGRtgR~ 377 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--------------------FESMQQRFGRVNRF 377 (844)
T ss_pred cccCCc-ceEEECCCC--------------------HHHHHHHhcccCCC
Confidence 999986 888886655 37999999999998
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=9e-17 Score=132.29 Aligned_cols=100 Identities=12% Similarity=0.269 Sum_probs=83.5
Q ss_pred CCCeEEEEeecCCCCC---CCceEEEecCCCCHHHHHHHhhcCCCC-ceEEEEeccccccccccCCccEEEecCCCceee
Q psy16353 16 SPNISLLLCSSLNKPE---VQWKIVVLHSSIPKEQQDLVFTRFPPG-VRKIVLSTNIAESSITVPDVKYVVDFCLTKVLT 91 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---~~~~~~~lh~~l~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~ 91 (132)
...++||||++...++ ..+.+..+||++++++|.+++++|+.| ..++||+|+++.+|+|+|++++||+++.|..
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~g-- 572 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYG-- 572 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCC--
Confidence 5779999998877663 344466789999999999999999865 7799999999999999999999999987743
Q ss_pred ecCCCCcccccccccCHhhHHHhhcccCCCCC-ceE-------EEEEeC
Q psy16353 92 VAEGSNYSSLQLEWASESSCQQRAGRVGRVSE-GRV-------YYMVTR 132 (132)
Q Consensus 92 ~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~-g~~-------~~l~s~ 132 (132)
|..+|+||+||++|..+ |.+ |.|+++
T Consensus 573 ---------------S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~ 606 (732)
T TIGR00603 573 ---------------SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSK 606 (732)
T ss_pred ---------------CHHHHHHHhcccccCCCCCccccccceEEEEecC
Confidence 57999999999999944 333 666653
No 77
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.65 E-value=4.2e-16 Score=94.86 Aligned_cols=71 Identities=31% Similarity=0.553 Sum_probs=67.4
Q ss_pred CceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHH
Q psy16353 33 QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQ 112 (132)
Q Consensus 33 ~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~ 112 (132)
++.+..+||++++++|.++++.|.++..+++++|++++.|+|+|++++||.++.|. +..+|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~------------------~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW------------------SPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC------------------CHHHHH
Confidence 68899999999999999999999999999999999999999999999999999987 478999
Q ss_pred HhhcccCCC
Q psy16353 113 QRAGRVGRV 121 (132)
Q Consensus 113 qR~GR~gR~ 121 (132)
|++||++|.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 78
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.65 E-value=3e-16 Score=125.57 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=81.1
Q ss_pred CCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEec-cccccccccCCccEEEecCCC
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLST-NIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT-~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+.+|||++.++++ .+.++..+||++++++|.++++.|+.|+..+|||| +++++|+|+|++++||....+
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~ 423 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPS 423 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCC
Confidence 467888888877773 68899999999999999999999999999999998 899999999999999988777
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCCCce
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGR 125 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~ 125 (132)
. |...|+||+||++|..+|+
T Consensus 424 ~------------------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 424 K------------------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred c------------------chhhhhhhhhccccCCCCC
Confidence 6 5789999999999996655
No 79
>KOG0351|consensus
Probab=99.63 E-value=4.1e-16 Score=131.18 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=93.0
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
+....+||+|.+++.++ .++.+..+|++|++.+|..+..+|..++.+|++||=++.+|+|-|||+.||+|++
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC
Confidence 45678999999999994 7889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|+ |.+.|.|-+|||||. .+..|..||.
T Consensus 563 Pk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 563 PK------------------SFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred ch------------------hHHHHHHhccccCcCCCcceeEEecc
Confidence 99 579999999999999 7899999885
No 80
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.61 E-value=2e-15 Score=124.19 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC-------cc
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD-------VK 79 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~-------v~ 79 (132)
.....+||||+|.+.++ .+++...||++ +.+|+..+.+|..+...|+||||+|+||+||+. .-
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 35778999999999884 79999999999 778999999999999999999999999999988 44
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|||++++|. |...|.||+||+||. .||.+..++|
T Consensus 481 ~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 481 YVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred EEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEe
Confidence 999999998 579999999999999 8999888876
No 81
>KOG0337|consensus
Probab=99.60 E-value=3.7e-16 Score=120.39 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=91.1
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
.+++++||+.|+..++ .++.+..+||+|++..|...+.+|..++..++|.||+|+||+|+|..+-|||||+|
T Consensus 260 ~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 260 KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCC
Confidence 4678999999999995 78899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
.+ ..-++||+||+.|. +.|.+|.|+.
T Consensus 340 ~~------------------~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 340 PD------------------DKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred CC------------------CceEEEEecchhhccccceEEEEEe
Confidence 86 47899999999999 7999998875
No 82
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=2e-15 Score=125.02 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=87.8
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccccccccc---CCcc----
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITV---PDVK---- 79 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi---~~v~---- 79 (132)
....++||||+|++.++ .+++...||+++...++..+.++++.|. |+||||+|+||.|| ++|.
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GG 515 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGG 515 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCC
Confidence 36789999999999884 7899999999999888888888888876 99999999999999 4899
Q ss_pred -EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 -YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 -~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|||+++.|. |...+.||+||+||. .||.+..++|
T Consensus 516 LhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~s 551 (796)
T PRK12906 516 LAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLS 551 (796)
T ss_pred cEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEe
Confidence 999999998 579999999999999 8999888876
No 83
>KOG0352|consensus
Probab=99.59 E-value=8.1e-16 Score=119.08 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=95.0
Q ss_pred cccccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc
Q psy16353 8 TFSPHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK 79 (132)
Q Consensus 8 ~~~~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~ 79 (132)
.++-......+-.||||.|+++++ .|+.+.++|++|...||.++-+++.+++..||+||..+.+|+|-|+|+
T Consensus 246 ~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VR 325 (641)
T KOG0352|consen 246 KASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVR 325 (641)
T ss_pred hhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCccee
Confidence 334444445678899999999995 899999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+||+.+.|.. .+-|.|-.||+||. .+.+|=..|++
T Consensus 326 FViHW~~~qn------------------~AgYYQESGRAGRDGk~SyCRLYYsR 361 (641)
T KOG0352|consen 326 FVIHWSPSQN------------------LAGYYQESGRAGRDGKRSYCRLYYSR 361 (641)
T ss_pred EEEecCchhh------------------hHHHHHhccccccCCCccceeeeecc
Confidence 9999999984 79999999999999 67777766664
No 84
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.59 E-value=3.2e-15 Score=124.02 Aligned_cols=88 Identities=27% Similarity=0.301 Sum_probs=81.7
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....+|||+||+..++ .+..+...||+++.+.|.++-++|++|+.+++|||+.+|-|||+.+|+.||+++-
T Consensus 252 ~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 252 KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCC
Confidence 3458999999999995 3478899999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
|+ |.+.+.||+||+|+.
T Consensus 332 P~------------------sV~r~lQRiGRsgHr 348 (814)
T COG1201 332 PK------------------SVNRFLQRIGRAGHR 348 (814)
T ss_pred cH------------------HHHHHhHhccccccc
Confidence 98 479999999999987
No 85
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.54 E-value=8.9e-15 Score=112.77 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=64.1
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..+++||||+|++.++ .++.+..+||.+++.+|.+.. +..+||||+++++|+|++.+ +|| ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC
Confidence 4679999999999883 246788999999999887653 57899999999999999987 555 44
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVG 119 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~g 119 (132)
|. +.++|+||+||+|
T Consensus 343 -p~------------------~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -AR------------------DAAAFWQRLGRLG 357 (357)
T ss_pred -CC------------------CHHHHhhhcccCC
Confidence 54 3689999999997
No 86
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=3.5e-14 Score=119.12 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=84.0
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC---Ccc-----
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP---DVK----- 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~---~v~----- 79 (132)
...++||||+|++.++ .++++..||+ .+.+|+..+.+|..+...|+||||+|+||+||+ +|.
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL 674 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGL 674 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCc
Confidence 5779999999998873 7899999997 477899999999999999999999999999998 554
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+||++..|. |...|.||+||+||. .||.+..++|
T Consensus 675 ~VIgterhe------------------s~Rid~Ql~GRtGRqGdpGsS~ffvS 709 (1025)
T PRK12900 675 FILGSERHE------------------SRRIDRQLRGRAGRQGDPGESVFYVS 709 (1025)
T ss_pred eeeCCCCCc------------------hHHHHHHHhhhhhcCCCCcceEEEec
Confidence 347777776 467899999999999 8999998876
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.49 E-value=1.3e-13 Score=111.70 Aligned_cols=99 Identities=20% Similarity=0.331 Sum_probs=88.2
Q ss_pred CCCeEEEEeecCCCCC------------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~ 77 (132)
...++.|-|+-.++.+ +++++.-+||.|+++++.+++++|++|+.+|||||.+.|-|+|+|+
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPn 551 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPN 551 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCC
Confidence 5678888898888773 6888999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 78 VKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 78 v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
..++|-.+...-. -++..|=+||+||. .++.|+.+|.
T Consensus 552 ATvMVIe~AERFG-----------------LaQLHQLRGRVGRG~~qSyC~Ll~~ 589 (677)
T COG1200 552 ATVMVIENAERFG-----------------LAQLHQLRGRVGRGDLQSYCVLLYK 589 (677)
T ss_pred CeEEEEechhhhh-----------------HHHHHHhccccCCCCcceEEEEEeC
Confidence 9998877655432 58999999999999 8899998875
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=6.6e-13 Score=112.61 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=85.5
Q ss_pred CCCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 15 FSPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...|++....|..++.+ +..++...||+|+..+-++++.+|-+|+.+|||||.+.|.|+|||+++.+|--
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe
Confidence 35677777777666663 89999999999999999999999999999999999999999999999987744
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+.-.- -.++..|-+||+||. +.++||.||.
T Consensus 881 ~AD~f-----------------GLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 881 RADKF-----------------GLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ccccc-----------------cHHHHHHhccccCCccceEEEEEeec
Confidence 33322 158999999999999 8999999986
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.40 E-value=4.7e-13 Score=112.69 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=71.7
Q ss_pred CCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHH----HHHhhcC-CCCc---eEEEEeccccccccccC
Q psy16353 16 SPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQ----DLVFTRF-PPGV---RKIVLSTNIAESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r----~~~~~~f-~~g~---~~vlvaT~~~~~Gldi~ 76 (132)
..++++|||||.+.+. .+..+..+||.+++.+| +++++.| ++|+ .+|||||+++|+|+|+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 4678999999999882 13689999999999988 4567778 6666 4799999999999999
Q ss_pred CccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 77 DVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 77 ~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
+++++|....|. ..++||+||++|.
T Consensus 638 d~DvlItdlaPi--------------------dsLiQRaGR~~R~ 662 (878)
T PRK09694 638 DFDWLITQLCPV--------------------DLLFQRLGRLHRH 662 (878)
T ss_pred CCCeEEECCCCH--------------------HHHHHHHhccCCC
Confidence 689999876664 6999999999998
No 90
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.40 E-value=1.2e-13 Score=110.33 Aligned_cols=101 Identities=22% Similarity=0.359 Sum_probs=87.4
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
-.+++|||++|++.+ ..|+++.++|++|+..+|+.+-.+|..++..++|+|-.++.|+|+|.-.+|..+
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--- 515 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--- 515 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH---
Confidence 468999999999999 378999999999999999999999999999999999999999999976655432
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC---CCceEEEEE
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV---SEGRVYYMV 130 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~---~~g~~~~l~ 130 (132)
-..-..|.|+.++.|..|||||. ..|++|.+.
T Consensus 516 -----------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 516 -----------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred -----------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 11234688999999999999998 468888765
No 91
>PRK09401 reverse gyrase; Reviewed
Probab=99.38 E-value=4e-13 Score=116.09 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=70.4
Q ss_pred CeEEEEeecCCC---C--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEe----ccccccccccCC-ccEE
Q psy16353 18 NISLLLCSSLNK---P--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLS----TNIAESSITVPD-VKYV 81 (132)
Q Consensus 18 ~~~ivF~~t~~~---~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gldi~~-v~~V 81 (132)
..+||||+|++. + ..|+++..+||+| .+.+++|++|+.+|||| ||+++||||+|+ |++|
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 579999999888 4 3799999999999 23459999999999999 799999999999 8999
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccC
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVG 119 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~g 119 (132)
|+||+|+... +.. ....+.||.||+-
T Consensus 404 I~y~vP~~~~-~~~-----------~~~~~~~~~~r~~ 429 (1176)
T PRK09401 404 IFYGVPKFKF-SLE-----------EELAPPFLLLRLL 429 (1176)
T ss_pred EEeCCCCEEE-ecc-----------ccccCHHHHHHHH
Confidence 9999998431 111 1367889999874
No 92
>PRK14701 reverse gyrase; Provisional
Probab=99.33 E-value=1.1e-12 Score=115.91 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=64.1
Q ss_pred cccccCCCCeEEEEeecCCCC-----------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEec----cccccccc
Q psy16353 10 SPHATFSPNISLLLCSSLNKP-----------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLST----NIAESSIT 74 (132)
Q Consensus 10 ~~~~~~~~~~~ivF~~t~~~~-----------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gld 74 (132)
.+.+.. ...+||||+|++.+ +.|+++..+||+ |.+++++|++|+.+||||| ++++||||
T Consensus 324 ~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGID 397 (1638)
T PRK14701 324 ELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLD 397 (1638)
T ss_pred HHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCc
Confidence 333433 46799999999875 379999999985 8889999999999999999 59999999
Q ss_pred cCC-ccEEEecCCCce
Q psy16353 75 VPD-VKYVVDFCLTKV 89 (132)
Q Consensus 75 i~~-v~~VI~~~~p~~ 89 (132)
+|+ |+|||++|+|+.
T Consensus 398 iP~~Vryvi~~~~Pk~ 413 (1638)
T PRK14701 398 LPERIRFAVFYGVPKF 413 (1638)
T ss_pred cCCccCEEEEeCCCCC
Confidence 999 999999999993
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.32 E-value=3.5e-12 Score=96.70 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=75.4
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE-ec
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV-DF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI-~~ 84 (132)
....++||+++.+..+ +.....++|+. .+.|.+..++|++|+.++|++|.++|||+++|+|++.| +.
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga 381 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA 381 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC
Confidence 4568999999988763 34455678877 56789999999999999999999999999999999754 44
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC--C-CceEEEE
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV--S-EGRVYYM 129 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~--~-~g~~~~l 129 (132)
.-+. .|.+..+|-+||+||. . .|..+.+
T Consensus 382 eh~v-----------------fTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 382 EHRV-----------------FTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred Cccc-----------------ccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 3322 1578999999999998 3 4665544
No 94
>KOG0353|consensus
Probab=99.29 E-value=4.5e-12 Score=97.59 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=90.8
Q ss_pred ccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 13 ATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 13 ~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
..+.....||||-+.++++ .|+.+..+|+.|.|+++..+-+.+-.|+..|+|||-.+.+|+|-|+|++||+.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 3456778899999999984 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHH-------------------------------------------hhcccCCC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQ-------------------------------------------RAGRVGRV 121 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~q-------------------------------------------R~GR~gR~ 121 (132)
.+|+ |.++|.| ..||+||.
T Consensus 393 sl~k------------------sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd 454 (695)
T KOG0353|consen 393 SLPK------------------SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRD 454 (695)
T ss_pred ccch------------------hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccC
Confidence 9998 5788888 78999999
Q ss_pred -CCceEEEEE
Q psy16353 122 -SEGRVYYMV 130 (132)
Q Consensus 122 -~~g~~~~l~ 130 (132)
.+..|+..|
T Consensus 455 ~~~a~cilyy 464 (695)
T KOG0353|consen 455 DMKADCILYY 464 (695)
T ss_pred CCcccEEEEe
Confidence 788888776
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.3e-11 Score=99.11 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=67.4
Q ss_pred CCceEEEecCCCCHHHH--HHHhhcCCCCceEEEEeccccccccccCCccEE--EecCCCceeeecCCCCcccccccccC
Q psy16353 32 VQWKIVVLHSSIPKEQQ--DLVFTRFPPGVRKIVLSTNIAESSITVPDVKYV--VDFCLTKVLTVAEGSNYSSLQLEWAS 107 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r--~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V--I~~~~p~~~~~~~~~~~~~~~~~~~s 107 (132)
++.++..+|++++...+ ++++++|++|+.+|||+|+++++|+|+|+|++| +|.|..-. .|.-+...- .
T Consensus 283 p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~---~pd~ra~E~-----~ 354 (505)
T TIGR00595 283 PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLH---SPDFRAAER-----G 354 (505)
T ss_pred CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCccccc---CcccchHHH-----H
Confidence 47788999999887655 889999999999999999999999999999987 47765321 111100000 1
Q ss_pred HhhHHHhhcccCCC-CCceEE
Q psy16353 108 ESSCQQRAGRVGRV-SEGRVY 127 (132)
Q Consensus 108 ~~~~~qR~GR~gR~-~~g~~~ 127 (132)
-..|.|++||+||. .+|.++
T Consensus 355 ~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 355 FQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHHHHHhccCCCCCCCEEE
Confidence 35789999999998 788876
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.26 E-value=1.5e-11 Score=97.28 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=78.5
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...+++||+.+..++. .+. +..+.++.++.+|.++++.|+.|+.++|+++.++..|+|+|+++++|.....
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 4679999999998883 455 7799999999999999999999999999999999999999999999987765
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
. |+..|+||+||.-|.
T Consensus 361 ~------------------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 361 G------------------SRRLFIQRLGRGLRP 376 (442)
T ss_pred C------------------cHHHHHHHhhhhccC
Confidence 5 689999999999995
No 97
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.24 E-value=7.9e-12 Score=108.23 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=62.6
Q ss_pred CCeEEEEeecC---CCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEe----ccccccccccCC-ccE
Q psy16353 17 PNISLLLCSSL---NKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLS----TNIAESSITVPD-VKY 80 (132)
Q Consensus 17 ~~~~ivF~~t~---~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gldi~~-v~~ 80 (132)
.+.+||||+|+ +.+ +.++++..+||+|++ +++++|++|+.+|||| ||+++||||+|+ |+|
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccE
Confidence 35799999998 444 368999999999973 6889999999999999 599999999999 899
Q ss_pred EEecCCCceee
Q psy16353 81 VVDFCLTKVLT 91 (132)
Q Consensus 81 VI~~~~p~~~~ 91 (132)
||+||+|+...
T Consensus 402 vI~~~~P~~~~ 412 (1171)
T TIGR01054 402 AVFLGVPKFKV 412 (1171)
T ss_pred EEEECCCCEEE
Confidence 99999999754
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.21 E-value=2.1e-11 Score=102.78 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=85.6
Q ss_pred CCCeEEEEeecCCCCC------------CC----ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQ----WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~----~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~ 79 (132)
+.-++|+|+.+++.++ .+ ..+..++++|..++|.++...|++|+..++++|+.+|-|+|+.+++
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 5678999999999984 23 5688899999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEE
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYM 129 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l 129 (132)
.||.+++|.. |..++.||+||+||. +.+..+..
T Consensus 385 avi~~g~P~~-----------------s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 385 AVIAYGYPGV-----------------SVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred hHhhcCCCCc-----------------hHHHHHHhhhhccCCCCCceEEEE
Confidence 9999999984 468999999999998 45554433
No 99
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.16 E-value=5.7e-11 Score=98.36 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=68.4
Q ss_pred CCceEEEecCCCCH--HHHHHHhhcCCCCceEEEEeccccccccccCCccEE--EecCCCceeeecCCCCcccccccccC
Q psy16353 32 VQWKIVVLHSSIPK--EQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYV--VDFCLTKVLTVAEGSNYSSLQLEWAS 107 (132)
Q Consensus 32 ~~~~~~~lh~~l~~--~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V--I~~~~p~~~~~~~~~~~~~~~~~~~s 107 (132)
++.++..+|+++.+ +++++++++|++|+.+|||+|+++++|+|+|+|++| +|.|.+... |.-+...- .
T Consensus 451 p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~---pdfra~Er-----~ 522 (679)
T PRK05580 451 PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS---PDFRASER-----T 522 (679)
T ss_pred CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC---CccchHHH-----H
Confidence 47889999999874 568899999999999999999999999999999988 466655321 11100000 1
Q ss_pred HhhHHHhhcccCCC-CCceEEE
Q psy16353 108 ESSCQQRAGRVGRV-SEGRVYY 128 (132)
Q Consensus 108 ~~~~~qR~GR~gR~-~~g~~~~ 128 (132)
-..|.|++||+||. .+|.++.
T Consensus 523 ~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEE
Confidence 25799999999997 7888773
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.14 E-value=9.4e-11 Score=101.23 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=75.9
Q ss_pred CCCeEEEEeecCCCCC--------------CC---ceEEEecCCCCHHHHHHHhhcCCCCce-EEEEeccccccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE--------------VQ---WKIVVLHSSIPKEQQDLVFTRFPPGVR-KIVLSTNIAESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------------~~---~~~~~lh~~l~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gldi~~ 77 (132)
.++++||||.+.++++ ++ ..+..++|+.+ ++.+++++|++++. +|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3589999999988863 12 24567899876 45779999999876 79999999999999999
Q ss_pred ccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCC--ceE
Q psy16353 78 VKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSE--GRV 126 (132)
Q Consensus 78 v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~--g~~ 126 (132)
|.+||.+..+. |...|.|++||+.|..+ |+-
T Consensus 775 v~~vVf~rpvk------------------S~~lf~QmIGRgtR~~~~~~K~ 807 (1123)
T PRK11448 775 ICNLVFLRRVR------------------SRILYEQMLGRATRLCPEIGKT 807 (1123)
T ss_pred ccEEEEecCCC------------------CHHHHHHHHhhhccCCccCCCc
Confidence 99999998887 68999999999999855 553
No 101
>KOG0329|consensus
Probab=99.10 E-value=2.8e-11 Score=89.00 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=65.5
Q ss_pred CcccccccCCCCeEEEEeecCCCCCCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 7 GTFSPHATFSPNISLLLCSSLNKPEVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 7 ~~~~~~~~~~~~~~ivF~~t~~~~~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
.++.+......++++||+.+.... + | ..+ +|||++..||+|+..+++++|||.
T Consensus 273 kl~dLLd~LeFNQVvIFvKsv~Rl-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 273 KLNDLLDVLEFNQVVIFVKSVQRL-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhhhhhhhhhcceeEeeehhhhh-------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 345566667788999999876641 1 2 123 899999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|.+ ..+|.||+|||||. ..|.++.+++
T Consensus 326 p~~------------------~DtYlHrv~rAgrfGtkglaitfvs 353 (387)
T KOG0329|consen 326 PED------------------SDTYLHRVARAGRFGTKGLAITFVS 353 (387)
T ss_pred CCC------------------chHHHHHhhhhhccccccceeehhc
Confidence 996 58999999999999 7898988765
No 102
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.09 E-value=2.2e-10 Score=95.72 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=67.5
Q ss_pred EEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhh
Q psy16353 36 IVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRA 115 (132)
Q Consensus 36 ~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~ 115 (132)
+...|++|+.++|+-+-+.|+.|+.+||+||+.++.|+++|.-.+|| .|.. .|+|.. ..+.++..+++|..
T Consensus 317 vafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VII-k~~~---~y~~~~-----g~~~i~~~dv~QM~ 387 (766)
T COG1204 317 VAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVII-KDTR---RYDPKG-----GIVDIPVLDVLQMA 387 (766)
T ss_pred ccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEE-eeeE---EEcCCC-----CeEECchhhHhhcc
Confidence 34578999999999999999999999999999999999999766555 4432 356521 25777899999999
Q ss_pred cccCCCC---CceEEEE
Q psy16353 116 GRVGRVS---EGRVYYM 129 (132)
Q Consensus 116 GR~gR~~---~g~~~~l 129 (132)
|||||.+ -|..+.+
T Consensus 388 GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 388 GRAGRPGYDDYGEAIIL 404 (766)
T ss_pred CcCCCCCcCCCCcEEEE
Confidence 9999982 4555544
No 103
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.7e-10 Score=89.88 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...+++|-+-|++-+ +.|+++..+|++...-+|.+++.+++.|..+|||--|++-.|+|+|.|..|.-.|.-
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 457899999888887 489999999999999999999999999999999999999999999999998755544
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
++... -|..+.+|-+|||+|+-.|+++...
T Consensus 525 KeGFL-------------Rse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 525 KEGFL-------------RSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred ccccc-------------cccchHHHHHHHHhhccCCeEEEEc
Confidence 43321 1568999999999999999987653
No 104
>KOG0921|consensus
Probab=99.07 E-value=5.9e-11 Score=98.75 Aligned_cols=101 Identities=42% Similarity=0.668 Sum_probs=95.9
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhH
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSC 111 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~ 111 (132)
......++|+.+...++.++++..++|..++|++|++++..+++.++.+|||.+......|...+......+.|.|+.+.
T Consensus 673 ~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~ 752 (1282)
T KOG0921|consen 673 NKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNL 752 (1282)
T ss_pred hhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccch
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCceEEEEEeC
Q psy16353 112 QQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 112 ~qR~GR~gR~~~g~~~~l~s~ 132 (132)
+||.||+||.++|.|+++.++
T Consensus 753 eqr~gr~grvR~G~~f~lcs~ 773 (1282)
T KOG0921|consen 753 EQRKGRAGRVRPGFCFHLCSR 773 (1282)
T ss_pred HhhcccCceecccccccccHH
Confidence 999999999999999998763
No 105
>KOG0950|consensus
Probab=99.02 E-value=6.8e-10 Score=92.83 Aligned_cols=85 Identities=15% Similarity=0.360 Sum_probs=69.6
Q ss_pred CceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHH
Q psy16353 33 QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQ 112 (132)
Q Consensus 33 ~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~ 112 (132)
.+-+...|++++.++|..+-+.|++|-..|++||+.+..|+++|..+++|-.-. ......+..+|.
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~Yk 587 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYK 587 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHH
Confidence 444667899999999999999999999999999999999999999999884311 222334678999
Q ss_pred HhhcccCCC---CCceEEEEEe
Q psy16353 113 QRAGRVGRV---SEGRVYYMVT 131 (132)
Q Consensus 113 qR~GR~gR~---~~g~~~~l~s 131 (132)
|++|||||. .-|.++.++.
T Consensus 588 QM~GRAGR~gidT~GdsiLI~k 609 (1008)
T KOG0950|consen 588 QMVGRAGRTGIDTLGDSILIIK 609 (1008)
T ss_pred hhhhhhhhcccccCcceEEEee
Confidence 999999998 3577776654
No 106
>KOG0953|consensus
Probab=99.00 E-value=1.8e-09 Score=86.35 Aligned_cols=111 Identities=18% Similarity=0.255 Sum_probs=83.2
Q ss_pred cccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCC--CceEEEEeccccccccccCCccEE
Q psy16353 12 HATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPP--GVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 12 ~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
.+...+|.++|=++.++-- ..+-.+..+||+|+|+.|.+--..|.. ++.+|+||||...+|+++ +|+-|
T Consensus 352 l~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRi 430 (700)
T KOG0953|consen 352 LSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRI 430 (700)
T ss_pred hccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEE
Confidence 3445788887755433322 255569999999999988776666754 889999999999999999 77878
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC----CceEEEEEeC
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS----EGRVYYMVTR 132 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~----~g~~~~l~s~ 132 (132)
|-+.+-+ |+ ...+..++.++..|-+|||||.+ .|.+-+|+++
T Consensus 431 iF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 431 IFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred EEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 7676654 22 34567788899999999999984 4777777653
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1.4e-09 Score=91.16 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCc---------
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDV--------- 78 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v--------- 78 (132)
...++||||+|.+.++ .++++..||+. +.+|+..+.+|..++..|+||||+|+||+||+-=
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~ 506 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAA 506 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhh
Confidence 5678999999999884 78999999996 7789999999999999999999999999999531
Q ss_pred -----------------------------cEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEE
Q psy16353 79 -----------------------------KYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYY 128 (132)
Q Consensus 79 -----------------------------~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~ 128 (132)
=|||-...+ -|..-=.|-.||+||. .||.+-.
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerh------------------esrRid~QlrGRagRQGdpGss~f 568 (830)
T PRK12904 507 LLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERH------------------ESRRIDNQLRGRSGRQGDPGSSRF 568 (830)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccC------------------chHHHHHHhhcccccCCCCCceeE
Confidence 034433333 3566778999999999 7898766
Q ss_pred EEe
Q psy16353 129 MVT 131 (132)
Q Consensus 129 l~s 131 (132)
++|
T Consensus 569 ~lS 571 (830)
T PRK12904 569 YLS 571 (830)
T ss_pred EEE
Confidence 654
No 108
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.97 E-value=1.6e-09 Score=92.80 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=82.1
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCC---ceEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPG---VRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g---~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++|||+...... ..++....++|+++.++|..+++.|... ..-+|++|.+++.||++..+++||.|
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 456999999765433 2788999999999999999999999653 34578999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC---CceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS---EGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~---~g~~~~l~s~ 132 (132)
|.+.+ +....|+.||+-|.+ +-.+|+|+++
T Consensus 566 D~dWN------------------P~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 566 DSDWN------------------PQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred CCCCC------------------hHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 99974 578899999998883 3457787764
No 109
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=4.2e-09 Score=88.62 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC---ccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD---VKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~---v~~VI~~ 84 (132)
....+||||+|.+.++ .+++...||+++.+.++..+.++|+.|. |+||||+|+||+||-- ..+-+.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~- 519 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLA- 519 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhh-
Confidence 5678999999999884 8999999999999999999999999994 9999999999999841 000000
Q ss_pred CCCce-----------------eeecCCCCcc-cccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 85 CLTKV-----------------LTVAEGSNYS-SLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 85 ~~p~~-----------------~~~~~~~~~~-~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
..+.+ .-.-...|+. ......-|..-=.|=+||+||. .||.+-.++|
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lS 585 (896)
T PRK13104 520 NLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLS 585 (896)
T ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 00000 0000011111 1222334566668999999999 7898766654
No 110
>KOG4150|consensus
Probab=98.91 E-value=8.7e-10 Score=88.71 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=78.9
Q ss_pred CCeEEEEeecCCCCC--------------CC--ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccE
Q psy16353 17 PNISLLLCSSLNKPE--------------VQ--WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------------~~--~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~ 80 (132)
.=++|-||.+++-|+ +. -.+..+.|+-..++|.++....=.|+.+-++|||.+|-|+||.+++.
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDA 604 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDA 604 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccccee
Confidence 447899999998884 11 12345778889999999988888899999999999999999999999
Q ss_pred EEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEE
Q psy16353 81 VVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVY 127 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~ 127 (132)
|+..|+|. |.+++.|..|||||. .+..+.
T Consensus 605 Vl~~GFP~------------------S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 605 VLHLGFPG------------------SIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred EEEccCch------------------hHHHHHHHhccccccCCCceEE
Confidence 99999998 689999999999998 666544
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=7.1e-09 Score=87.19 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=77.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC----------
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD---------- 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~---------- 77 (132)
...++||||+|.+..+ .++++..||+++++.++..+.++|+.|. |+||||+|+||.||--
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~ 525 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEA 525 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhh
Confidence 4678999999999884 8999999999999999999999999988 9999999999999841
Q ss_pred ----------------------c-----cEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEE
Q psy16353 78 ----------------------V-----KYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYM 129 (132)
Q Consensus 78 ----------------------v-----~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l 129 (132)
| =|||=...+. |..-=.|=+||+||. .||.+-.+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 526 LENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHE------------------SRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred hcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCc------------------hHHHHhhhhcccccCCCCCceeEE
Confidence 1 1344333333 455567899999999 78987666
Q ss_pred Ee
Q psy16353 130 VT 131 (132)
Q Consensus 130 ~s 131 (132)
+|
T Consensus 588 lS 589 (908)
T PRK13107 588 LS 589 (908)
T ss_pred EE
Confidence 54
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.76 E-value=1.2e-08 Score=85.44 Aligned_cols=93 Identities=23% Similarity=0.344 Sum_probs=72.3
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcC----CCCceEEEEeccccccccccCCccEEE
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRF----PPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f----~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
.+.++++|-|||...+. .+..+.-+||.+...+|.+....+ +.+...|+|||.+.|.|+|+ +.+.+|
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mI 516 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLI 516 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeee
Confidence 46789999999998882 333699999999999998876642 45667999999999999999 477776
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC---CceEEE
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS---EGRVYY 128 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~---~g~~~~ 128 (132)
.++. +..+.+||+||+.|.+ +|..+.
T Consensus 517 -Te~a-------------------PidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 517 -TELA-------------------PIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred -ecCC-------------------CHHHHHHHHHHHhhcccccCCceeE
Confidence 2222 3579999999999985 455443
No 113
>KOG0951|consensus
Probab=98.59 E-value=1.1e-07 Score=82.03 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=67.1
Q ss_pred CceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHH
Q psy16353 33 QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQ 112 (132)
Q Consensus 33 ~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~ 112 (132)
.+.+...|++|+..+|..+-+-|..|.++|+|+|-.++.|+++|.-.++| -| ..+|||..+ +-...|+-+.+
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtVii-kg---tqvy~pekg----~w~elsp~dv~ 678 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVII-KG---TQVYDPEKG----RWTELSPLDVM 678 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEe-cC---ccccCcccC----ccccCCHHHHH
Confidence 44566789999999999999999999999999999999999999866665 33 345777743 23445888999
Q ss_pred HhhcccCCCC
Q psy16353 113 QRAGRVGRVS 122 (132)
Q Consensus 113 qR~GR~gR~~ 122 (132)
|+.|||||.+
T Consensus 679 qmlgragrp~ 688 (1674)
T KOG0951|consen 679 QMLGRAGRPQ 688 (1674)
T ss_pred HHHhhcCCCc
Confidence 9999999983
No 114
>KOG0948|consensus
Probab=98.50 E-value=3.1e-08 Score=81.70 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=68.0
Q ss_pred EEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhc
Q psy16353 37 VVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAG 116 (132)
Q Consensus 37 ~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~G 116 (132)
...||+|-|--++.+--=|++|-.++|.||..++.|++.|.-.+|. .. ..-++-...+|+|..+|+|..|
T Consensus 450 GIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~---------~rKfDG~~fRwissGEYIQMSG 519 (1041)
T KOG0948|consen 450 GIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TA---------VRKFDGKKFRWISSGEYIQMSG 519 (1041)
T ss_pred ccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-ee---------ccccCCcceeeecccceEEecc
Confidence 3468998887777776679999999999999999999999765554 22 2224456778999999999999
Q ss_pred ccCCC---CCceEEEEEe
Q psy16353 117 RVGRV---SEGRVYYMVT 131 (132)
Q Consensus 117 R~gR~---~~g~~~~l~s 131 (132)
||||. ..|.|+.++.
T Consensus 520 RAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 520 RAGRRGIDDRGIVILMID 537 (1041)
T ss_pred cccccCCCCCceEEEEec
Confidence 99998 4699988764
No 115
>KOG0947|consensus
Probab=98.41 E-value=6.5e-07 Score=75.66 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=64.2
Q ss_pred EEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhh
Q psy16353 36 IVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRA 115 (132)
Q Consensus 36 ~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~ 115 (132)
+...||++=|--++-+--=|+.|-.+||.||..+++|+++|.-.+|+++=-..+ -...+...+.+|.|.+
T Consensus 633 iaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhD----------G~efR~L~PGEytQMA 702 (1248)
T KOG0947|consen 633 IAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHD----------GNEFRELLPGEYTQMA 702 (1248)
T ss_pred chhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhcc----------CcceeecCChhHHhhh
Confidence 345688888876666666799999999999999999999998777776533322 1223334678999999
Q ss_pred cccCCC---CCceEEEEE
Q psy16353 116 GRVGRV---SEGRVYYMV 130 (132)
Q Consensus 116 GR~gR~---~~g~~~~l~ 130 (132)
|||||. ..|.++.+.
T Consensus 703 GRAGRRGlD~tGTVii~~ 720 (1248)
T KOG0947|consen 703 GRAGRRGLDETGTVIIMC 720 (1248)
T ss_pred ccccccccCcCceEEEEe
Confidence 999998 357776654
No 116
>KOG0952|consensus
Probab=98.09 E-value=1.5e-05 Score=68.23 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=78.5
Q ss_pred CCCeEEEEeecCCCCC----------------------C---------CceEEEecCCCCHHHHHHHhhcCCCCceEEEE
Q psy16353 16 SPNISLLLCSSLNKPE----------------------V---------QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVL 64 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------------------~---------~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlv 64 (132)
...+++|||.++..+- + ..-..-.|++|..++|.-.-+.|.+|-.+|++
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 5678999999998871 0 12344578999999999999999999999999
Q ss_pred eccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC---CCceEEE
Q psy16353 65 STNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV---SEGRVYY 128 (132)
Q Consensus 65 aT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~---~~g~~~~ 128 (132)
||..++-|+++|+- +||--|.+ .|++..| ..+..+...-+|-.|||||. ..|..+.
T Consensus 428 cTaTLAwGVNLPA~-aViIKGT~---~ydsskg----~f~dlgilDVlQifGRAGRPqFd~~G~giI 486 (1230)
T KOG0952|consen 428 CTATLAWGVNLPAY-AVIIKGTQ---VYDSSKG----SFVDLGILDVLQIFGRAGRPQFDSSGEGII 486 (1230)
T ss_pred ecceeeeccCCcce-EEEecCCc---ccccccC----ceeeehHHHHHHHHhccCCCCCCCCceEEE
Confidence 99999999999974 45545544 3666542 12333556889999999998 3566543
No 117
>KOG0392|consensus
Probab=97.99 E-value=2e-05 Score=68.36 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=78.9
Q ss_pred CCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCC-ceEEE-EeccccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPG-VRKIV-LSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g-~~~vl-vaT~~~~~Gldi~~v~~VI 82 (132)
...+++|||.-+...+ +.+....|.|+.++.+|.++.++|.++ ..+|| ++|-+.+-|+++-+.+.||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 5679999998877662 566677899999999999999999998 45655 7888999999999999999
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
-+.-- |||.+- -+++-|+-|.|-.+---+|+|+++
T Consensus 1419 FvEHD----WNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1419 FVEHD----WNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred EEecC----CCchhh-----------HHHHHHHHhhcCceeeeeeeehhc
Confidence 66433 566542 255666666666555668888775
No 118
>KOG0385|consensus
Probab=97.99 E-value=2.5e-05 Score=65.08 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=83.9
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCc---eEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGV---RKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~---~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++|||..-..-. -.++...-+.|+++.++|...++.|.... .=.+++|-.++-||++-..+.||-|
T Consensus 486 ~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIly 565 (971)
T KOG0385|consen 486 QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILY 565 (971)
T ss_pred CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEe
Confidence 567899998554433 28999999999999999999999996544 3467999999999999999999977
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|-- |||.. --++.+|+-|.|-..+-++|+|+|+
T Consensus 566 DSD----WNPQ~-----------DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 566 DSD----WNPQV-----------DLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred cCC----CCchh-----------hhHHHHHHHhhCCcCceEEEEEecc
Confidence 633 66664 3578899999999999999999974
No 119
>KOG0949|consensus
Probab=97.97 E-value=1.8e-05 Score=67.48 Aligned_cols=76 Identities=25% Similarity=0.315 Sum_probs=61.3
Q ss_pred EEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhc
Q psy16353 37 VVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAG 116 (132)
Q Consensus 37 ~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~G 116 (132)
...|++|....|..+--=|+.|...|++||..++-||++|.-.+|.--|--. .++..|.|.+|
T Consensus 966 G~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQ-----------------L~plny~QmaG 1028 (1330)
T KOG0949|consen 966 GVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQ-----------------LDPLNYKQMAG 1028 (1330)
T ss_pred cccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccc-----------------cCchhHHhhhc
Confidence 4579999999999888889999999999999999999999766665443222 24689999999
Q ss_pred ccCCC---CCceEEEE
Q psy16353 117 RVGRV---SEGRVYYM 129 (132)
Q Consensus 117 R~gR~---~~g~~~~l 129 (132)
||||. ..|.+..+
T Consensus 1029 RAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 1029 RAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred cccccccccccceEEE
Confidence 99998 35766554
No 120
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.85 E-value=2.3e-05 Score=67.39 Aligned_cols=83 Identities=28% Similarity=0.384 Sum_probs=67.4
Q ss_pred EecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcc
Q psy16353 38 VLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGR 117 (132)
Q Consensus 38 ~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR 117 (132)
..|++|=|..+..+-.-|++|-.+|+.||..++.|+++|.=.+|+ +.+.+. .....+|+++.+|.|..||
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~---------dG~~~r~L~~gEy~QmsGR 518 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKF---------DGNGHRWLSPGEYTQMSGR 518 (1041)
T ss_pred hhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEe---------cCCceeecChhHHHHhhhh
Confidence 568999999999998999999999999999999999998655444 544442 2445678899999999999
Q ss_pred cCCC---CCceEEEEE
Q psy16353 118 VGRV---SEGRVYYMV 130 (132)
Q Consensus 118 ~gR~---~~g~~~~l~ 130 (132)
|||. ..|.++...
T Consensus 519 AGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 519 AGRRGLDVLGTVIVIE 534 (1041)
T ss_pred hccccccccceEEEec
Confidence 9998 358777653
No 121
>KOG1123|consensus
Probab=97.82 E-value=2.2e-05 Score=62.98 Aligned_cols=89 Identities=11% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCeEEEEeecCCCC---CCCceEEEecCCCCHHHHHHHhhcCCCC-ceEEEEeccccccccccCCccEEEecCCCceee
Q psy16353 16 SPNISLLLCSSLNKP---EVQWKIVVLHSSIPKEQQDLVFTRFPPG-VRKIVLSTNIAESSITVPDVKYVVDFCLTKVLT 91 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~---~~~~~~~~lh~~l~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~ 91 (132)
...++|||..+.-.. ...+.--.+||..++.||.++++.|+-. +.+.|.-+-++..++|+|..++.|+..--.-
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G-- 619 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG-- 619 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc--
Confidence 567899998664433 1344445689999999999999999865 5788899999999999999999997543322
Q ss_pred ecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 92 VAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 92 ~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
|..+--||.||.-|.
T Consensus 620 ---------------SRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 620 ---------------SRRQEAQRLGRILRA 634 (776)
T ss_pred ---------------chHHHHHHHHHHHHH
Confidence 567889999999887
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.82 E-value=6.8e-05 Score=63.58 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=67.5
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc--------
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK-------- 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~-------- 79 (132)
....+||.|.|.+..+ .+++.-.|++.-...|-.-+-++-+ .-.|.||||+|+||.||---.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGRGTDI~Lg~~V~~~GGL 502 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGRGTDIKLSKEVLELGGL 502 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCC--CCeEEEecccccCCcCccCchhHHHcCCc
Confidence 4668999999988873 6888888887644333333322222 346889999999999995222
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|||-...+. |..-=.|-.||+||. .||.+-.++|
T Consensus 503 hVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 503 YVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred EEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 788777665 344556999999999 7897655544
No 123
>KOG0390|consensus
Probab=97.75 E-value=0.00014 Score=61.15 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=66.3
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCC--ceE-EEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCH
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPG--VRK-IVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASE 108 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g--~~~-vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~ 108 (132)
.|..++.|||+|+..+|+.+++.|-.. ... +|.+|-+.+.||++=+.+-+|-+|...+ |
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN----P-------------- 679 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN----P-------------- 679 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC----c--------------
Confidence 699999999999999999999999543 334 5577779999999999999999987754 3
Q ss_pred hhHHHhhcccCCC---CCceEEEEEe
Q psy16353 109 SSCQQRAGRVGRV---SEGRVYYMVT 131 (132)
Q Consensus 109 ~~~~qR~GR~gR~---~~g~~~~l~s 131 (132)
+.=.|.++||.|. ++-+.|+|++
T Consensus 680 a~d~QAmaR~~RdGQKk~v~iYrLla 705 (776)
T KOG0390|consen 680 AVDQQAMARAWRDGQKKPVYIYRLLA 705 (776)
T ss_pred hhHHHHHHHhccCCCcceEEEEEeec
Confidence 5557888888877 3566778775
No 124
>KOG0384|consensus
Probab=97.64 E-value=0.00013 Score=63.45 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=82.8
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCC---ceEEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPG---VRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g---~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++|||..-..-. ..+++.--|-|.+..+.|+.+++.|..- ...+|+||-+.+-||++...+.||.+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 457899998655433 2899999999999999999999999643 46789999999999999999999877
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|- .|||.+- -++.-|+-|.|-...-.+|+|+|+
T Consensus 778 DS----DWNPQND-----------LQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 778 DS----DWNPQND-----------LQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred CC----CCCcchH-----------HHHHHHHHhhcccceEEEEEEecC
Confidence 63 3777753 366678888887777889999985
No 125
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.55 E-value=0.00027 Score=59.00 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=65.1
Q ss_pred CCeEEEEeecCCCCC----------C---CceEEEecCCCCHH---------------------HHHHHhhcCCC-CceE
Q psy16353 17 PNISLLLCSSLNKPE----------V---QWKIVVLHSSIPKE---------------------QQDLVFTRFPP-GVRK 61 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~----------~---~~~~~~lh~~l~~~---------------------~r~~~~~~f~~-g~~~ 61 (132)
.++++|||.+++.+. + +...+.++++.+.+ ...++.++|+. +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 589999999988772 1 24556666654332 12367778865 6789
Q ss_pred EEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCce
Q psy16353 62 IVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGR 125 (132)
Q Consensus 62 vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~ 125 (132)
++|++|.+..|+|.|.+..++- |-|.. ...++|.+||+=|. .+++
T Consensus 594 ilIVvdmllTGFDaP~l~tLyl-dKplk------------------~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYL-DKPLK------------------YHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred EEEEEcccccccCCCccceEEE-ecccc------------------ccHHHHHHHHhccccCCCC
Confidence 9999999999999999998773 33432 24689999999994 5554
No 126
>KOG0389|consensus
Probab=97.55 E-value=0.00038 Score=58.39 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCc--eEEEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGV--RKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~--~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
+..++++|..-..-. ..++...-|.|+..-..|+.+++.|-..+ .-+|++|-..+-||++-..++||-+|
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 457899987544333 27899999999999999999999998765 34679999999999999999999877
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
.- |||.+ -.++.-|+-|+|-.+|-.+|+|+|+
T Consensus 856 ~d----FNP~d-----------D~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 856 ID----FNPYD-----------DKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cC----CCCcc-----------cchhHHHHHhhCCcceeEEEEEEec
Confidence 55 55653 3577888888888899999999986
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.52 E-value=6.2e-05 Score=64.27 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=70.7
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCcc--EE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVK--YV 81 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~--~V 81 (132)
.+++++||++|.+..+ .++.+.. .+.. .+|.+++++|+.++..||++|+.+.+|+|+|+.. .|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 5789999999987663 1233332 2222 4688899999999999999999999999999776 46
Q ss_pred EecCCCceeeecCCCCcc----------cccc--cccCHhhHHHhhcccCCCC--CceEE
Q psy16353 82 VDFCLTKVLTVAEGSNYS----------SLQL--EWASESSCQQRAGRVGRVS--EGRVY 127 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~----------~~~~--~~~s~~~~~qR~GR~gR~~--~g~~~ 127 (132)
|-.++|-..--+|..... .... .|-..-...|-+||.-|.. .|..+
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 678888642212211100 0000 0112355789999999983 45444
No 128
>KOG0387|consensus
Probab=97.49 E-value=0.00057 Score=57.40 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=80.6
Q ss_pred CCCeEEEEeecCCCC---------CCCceEEEecCCCCHHHHHHHhhcCCCCce--EEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKP---------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVR--KIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~---------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~--~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
.+.++++|..|+... ..++.++.+.|..+...|+...++|.++.. =+|++|-+..-|+++-+.+-||-|
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf 624 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF 624 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEE
Confidence 567999999887765 379999999999999999999999998864 366899999999999999999989
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+- |||.+ -.++.-|+=|.|-...-.+|+|.|.
T Consensus 625 DPd----WNPSt-----------D~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 625 DPD----WNPST-----------DNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred CCC----CCCcc-----------chHHHHHHHhhcCccceEEEEEecC
Confidence 855 56653 2344555555555556678998863
No 129
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.48 E-value=0.00035 Score=58.83 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=63.3
Q ss_pred CCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCC--CCceEEEEeccccccccccCCccEE
Q psy16353 17 PNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFP--PGVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~--~g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
.+|+||||.+..+++ .+-.+..+.|+-.+. +..++.|. +.-.+|.++.+++..|+|+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 789999999999983 344566677764433 33344543 3346899999999999999999887
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
|-.-.-. |+.-|.|.+||.=|.
T Consensus 504 VF~r~Vr------------------SktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVR------------------SKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhh------------------hHHHHHHHhcCcccc
Confidence 7443332 689999999999887
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.48 E-value=0.00054 Score=57.38 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=68.1
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC----------C
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP----------D 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~----------~ 77 (132)
....+||.+.|.+..+ .+++...|++.-..+|-.-+-++-+. -.|.||||+|.||.||- +
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~ 503 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDR 503 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHH
Confidence 5667899998887773 68888888887554443333333333 36889999999999984 1
Q ss_pred cc-----EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 78 VK-----YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 78 v~-----~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|. |||-...+. |..-=.|=+||+||. .||.+-.++|
T Consensus 504 V~~~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 504 VAELGGLHVIGTGRHR------------------SERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred HHHcCCcEEEeccCCc------------------hHHHHHHHhcccccCCCCCceeEEEE
Confidence 11 566555555 456678999999999 7898766654
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.48 E-value=0.00036 Score=59.76 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=66.7
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC---Ccc-----
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP---DVK----- 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~---~v~----- 79 (132)
....+||-+.|.+..+ .++....|++.-...|-.-+-++-+. -.|.||||+|.||.||- .|.
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GGL 644 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGGL 644 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCCcccccCchHHhcCCc
Confidence 3456888888776653 67787788876444333333333333 46899999999999983 222
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|||-...+. |..--.|-.||+||. .||.+-.++|
T Consensus 645 hVIgTer~e------------------s~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 645 YVIGTSRHQ------------------SRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred EEEeeccCc------------------hHHHHHHHhcccccCCCCCceeEEEE
Confidence 566666665 466778999999999 7998766654
No 132
>KOG0391|consensus
Probab=97.35 E-value=0.00064 Score=59.43 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=82.1
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCc--eEEEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGV--RKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~--~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
...++|||..-.+-. ..|+..+-|.|...-++|+..+++|..+. .+.|++|-....||++-+.+.||-||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 567899998665544 27889999999999999999999998776 47889999999999999999999887
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
-- |||-- -+++.-|.-|.|+.+.-+.|+|+|+
T Consensus 1355 sD----wNPtM-----------DaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1355 SD----WNPTM-----------DAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred CC----CCchh-----------hhHHHHHHHhhcCccceEEEEeecc
Confidence 44 44431 2455567777777788899999875
No 133
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.23 E-value=0.00023 Score=49.43 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc--ccccccccCC--c
Q psy16353 15 FSPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN--IAESSITVPD--V 78 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~--~~~~Gldi~~--v 78 (132)
..+++++||++|.+..+ .++.+..- ...+..+.++.|+.+...+|+++. .+..|+|+++ +
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 35789999999987652 12322222 244677888999999999999998 9999999985 7
Q ss_pred cEEEecCCCceeeecCCCCcc------------cccccccCHhhHHHhhcccCCCCC
Q psy16353 79 KYVVDFCLTKVLTVAEGSNYS------------SLQLEWASESSCQQRAGRVGRVSE 123 (132)
Q Consensus 79 ~~VI~~~~p~~~~~~~~~~~~------------~~~~~~~s~~~~~qR~GR~gR~~~ 123 (132)
+.||-.++|-...-+|..... .....+--.....|-+||+-|...
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~ 139 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED 139 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC
Confidence 789999999643223321110 000111123456788999988844
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00053 Score=57.58 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCceEEEecCCCCHHH--HHHHhhcCCCCceEEEEeccccccccccCCccEEE--ecCCCceeeecCCCCcccccccccC
Q psy16353 32 VQWKIVVLHSSIPKEQ--QDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV--DFCLTKVLTVAEGSNYSSLQLEWAS 107 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~--r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI--~~~~p~~~~~~~~~~~~~~~~~~~s 107 (132)
++.+++.+-++..... -+..++.|.+|+.+|||-|.+..-|.|+|++..|. |.|.-- ++|+-+.+.- .
T Consensus 505 P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L---~~~DfRA~Er-----~ 576 (730)
T COG1198 505 PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL---GSPDFRASER-----T 576 (730)
T ss_pred CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh---cCCCcchHHH-----H
Confidence 6778888887765533 45778999999999999999999999999999754 544322 2333222111 1
Q ss_pred HhhHHHhhcccCCC-CCceEE
Q psy16353 108 ESSCQQRAGRVGRV-SEGRVY 127 (132)
Q Consensus 108 ~~~~~qR~GR~gR~-~~g~~~ 127 (132)
-..+.|-+|||||. .+|.++
T Consensus 577 fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEE
Confidence 24578899999999 888765
No 135
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0014 Score=55.34 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=77.9
Q ss_pred eEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCC--ceEEEEeccccccccccCCccEEEecCCCc
Q psy16353 19 ISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPG--VRKIVLSTNIAESSITVPDVKYVVDFCLTK 88 (132)
Q Consensus 19 ~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g--~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~ 88 (132)
++++|.......+ .++....++|+++.+.|...++.|.++ ..-+++++-.++.|+++-..++||.+|...
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 7999997766552 457899999999999999999999986 456778888999999999999999998765
Q ss_pred eeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 89 VLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
. |.. ..++..|+-|.|+.++-.+|++.++
T Consensus 793 n----p~~-----------~~Qa~dRa~RigQ~~~v~v~r~i~~ 821 (866)
T COG0553 793 N----PAV-----------ELQAIDRAHRIGQKRPVKVYRLITR 821 (866)
T ss_pred C----hHH-----------HHHHHHHHHHhcCcceeEEEEeecC
Confidence 3 321 3455556666677777788888764
No 136
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.91 E-value=0.0021 Score=55.73 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC---Cc-----c
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP---DV-----K 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~---~v-----~ 79 (132)
....+||-+.|.+..+ .+++.-.|++....+|-.-+-++-+. -.|-||||+|.||-||- +| =
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL 704 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGL 704 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCC
Confidence 4556777777766653 56666667666544444433344444 35889999999999994 22 2
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|||-...+. |..--.|-+||+||. .||.+-.++|
T Consensus 705 ~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 705 AIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred EEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 566555554 567778999999999 7898666554
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.77 E-value=0.0048 Score=53.71 Aligned_cols=70 Identities=26% Similarity=0.235 Sum_probs=49.1
Q ss_pred CCceEEEecCCCCHHHHHHHhhcC--------------------------CCCceEEEEeccccccccccCCccEEEecC
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRF--------------------------PPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f--------------------------~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..+.+.++|+..+...|..+.+.. ..+...|+|+|.+.|.|+|+ |.+++|- +
T Consensus 785 ~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~-~ 862 (1110)
T TIGR02562 785 YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA-D 862 (1110)
T ss_pred CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee-c
Confidence 456688899998666554432221 12466899999999999999 4566551 1
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCCC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS 122 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~ 122 (132)
+. +..+.+||+||+-|.+
T Consensus 863 ~~-------------------~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 863 PS-------------------SMRSIIQLAGRVNRHR 880 (1110)
T ss_pred cC-------------------cHHHHHHHhhcccccc
Confidence 11 4679999999998874
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=96.74 E-value=0.0021 Score=55.06 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCCeEEEEeecCCCCC---------------------CCceEEE--ecCCCCHHHHHHHh---hcCCCCceEEEEecccc
Q psy16353 16 SPNISLLLCSSLNKPE---------------------VQWKIVV--LHSSIPKEQQDLVF---TRFPPGVRKIVLSTNIA 69 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------------------~~~~~~~--lh~~l~~~~r~~~~---~~f~~g~~~vlvaT~~~ 69 (132)
...++|-||.+.+... .++.+.. ..|.|...+|.+.+ ..|.+.+.+||----.+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcL 538 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCL 538 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhh
Confidence 3456777777766551 4455544 45788888885553 25677888988888899
Q ss_pred ccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCce
Q psy16353 70 ESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGR 125 (132)
Q Consensus 70 ~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~ 125 (132)
..|+|+|.++-||-++.-. |+...+|.+||+.|..+|+
T Consensus 539 SEGVDVPaLDsViFf~pr~------------------smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 539 SEGVDVPALDSVIFFDPRS------------------SMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred hcCCCccccceEEEecCch------------------hHHHHHHHHHHHHHhCcCC
Confidence 9999999999999776544 5789999999999997776
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.49 E-value=0.0064 Score=52.19 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=62.0
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC-----------
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP----------- 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~----------- 76 (132)
....+||-+.|.+..+ .+++.-.|++....+|-.-+-++-+. -.|.||||+|.||.||-
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~ 525 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDILLGGNWEVEVAA 525 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEecCCchHHHHHh
Confidence 4567788887777663 56666666665443333333333333 46889999999999983
Q ss_pred ---------------------Ccc-----EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEE
Q psy16353 77 ---------------------DVK-----YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYM 129 (132)
Q Consensus 77 ---------------------~v~-----~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l 129 (132)
.|. |||=...+. |..-=.|=.||+||. .||.+-.+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 526 LENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHE------------------SRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCc------------------hHHHHHHhccccccCCCCCceEEE
Confidence 111 444444443 455667999999999 78987666
Q ss_pred Ee
Q psy16353 130 VT 131 (132)
Q Consensus 130 ~s 131 (132)
+|
T Consensus 588 lS 589 (913)
T PRK13103 588 LS 589 (913)
T ss_pred EE
Confidence 54
No 140
>KOG0388|consensus
Probab=96.06 E-value=0.02 Score=48.31 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=77.9
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCce-EEEEeccccccccccCCccEEEecCC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVR-KIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...++++|+.-.+-. ..++..+-|.|+....+|..+..+|+..+. -+|++|-...-||++-..+.||-||-
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 345677776544433 278999999999999999999999987654 46689999999999999999998864
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
- |||-. -.+++-|+-|.|-.+.-.+|+|+++
T Consensus 1123 D----WNPT~-----------D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1123 D----WNPTA-----------DQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred C----CCcch-----------hhHHHHHHHhccCccceeeeeeccc
Confidence 4 44432 2456677777777777788988764
No 141
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.72 E-value=0.095 Score=41.96 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=64.8
Q ss_pred cCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc--ccccccCCccEEEe
Q psy16353 14 TFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA--ESSITVPDVKYVVD 83 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~--~~Gldi~~v~~VI~ 83 (132)
....+.+|||++|--+- +.++....+|--.++.+-.++-..|..|+.++|+.|.-+ =+=..+.+++.||-
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE
Confidence 45678899999986655 478888888888888888888899999999999999633 24566789999999
Q ss_pred cCCCceeeecC
Q psy16353 84 FCLTKVLTVAE 94 (132)
Q Consensus 84 ~~~p~~~~~~~ 94 (132)
|++|..+.|-+
T Consensus 377 Y~~P~~p~fY~ 387 (442)
T PF06862_consen 377 YGPPENPQFYS 387 (442)
T ss_pred ECCCCChhHHH
Confidence 99999764433
No 142
>KOG1000|consensus
Probab=95.53 E-value=0.05 Score=44.18 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCc-eE-EEEeccccccccccCCccEEEec
Q psy16353 15 FSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGV-RK-IVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~-~~-vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
..+.+.+||+.-..-. +.++..+-+.|..++.+|....+.|+..+ .+ .+++-..+..|+++...+.||-.
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 4677999999654433 48899999999999999999999998765 23 45666789999999999999977
Q ss_pred CCCceeeecCCCC
Q psy16353 85 CLTKVLTVAEGSN 97 (132)
Q Consensus 85 ~~p~~~~~~~~~~ 97 (132)
.++ |||...
T Consensus 570 EL~----wnPgvL 578 (689)
T KOG1000|consen 570 ELH----WNPGVL 578 (689)
T ss_pred Eec----CCCceE
Confidence 666 455543
No 143
>KOG1015|consensus
Probab=95.40 E-value=0.065 Score=46.70 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=73.9
Q ss_pred CCCeEEEEeecCCCCC------------------------------CCceEEEecCCCCHHHHHHHhhcCCCC----ceE
Q psy16353 16 SPNISLLLCSSLNKPE------------------------------VQWKIVVLHSSIPKEQQDLVFTRFPPG----VRK 61 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g----~~~ 61 (132)
-..+.|||..+..... .|.....|.|....++|+...+.|.+- .+-
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 4678999998877661 455667788999999999999998653 256
Q ss_pred EEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 62 IVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 62 vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
.||+|-..+-|+++=..+-||.+|... ||..- .+.+=|+=|-|-..|-..|+|.
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasW----NPSyD-----------tQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASW----NPSYD-----------TQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred EEEeeccCccccceeecceEEEEeccc----CCccc-----------hHHHHHHHhhcCcCceeehhhh
Confidence 889999999999998888888888765 44332 1334455555555677777765
No 144
>KOG1002|consensus
Probab=95.31 E-value=0.074 Score=43.34 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=71.7
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCc-eE-EEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGV-RK-IVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~-~~-vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..-++|||..-..-. ..|+.|+.|-|+|++..|...++.|++.. .+ +|++--.....+++-...+|...|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 344667765332221 37999999999999999999999998863 34 456666777888998899998776
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEe
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s 131 (132)
+= |||..- -+..-|+-|.|-.+|-++.+|+-
T Consensus 717 PW----WNpaVe-----------~Qa~DRiHRIGQ~rPvkvvrf~i 747 (791)
T KOG1002|consen 717 PW----WNPAVE-----------WQAQDRIHRIGQYRPVKVVRFCI 747 (791)
T ss_pred cc----ccHHHH-----------hhhhhhHHhhcCccceeEEEeeh
Confidence 33 555432 24455677777777888777753
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.28 E-value=0.06 Score=46.26 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCC-CHHHHHHHh-hcCCCCceEEEEecccccccccc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSI-PKEQQDLVF-TRFPPGVRKIVLSTNIAESSITV 75 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l-~~~~r~~~~-~~f~~g~~~vlvaT~~~~~Gldi 75 (132)
....+||-+.|.+..+ .+++.-.|++.- ..+.-.++. ++-+. -.|.||||+|+||.||
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 4567888888877763 788888888863 222223344 33333 4688999999999998
No 146
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.029 Score=48.84 Aligned_cols=74 Identities=11% Similarity=0.222 Sum_probs=57.3
Q ss_pred ccccCCCCeEEEEeecCCCC-----------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEec----ccccccccc
Q psy16353 11 PHATFSPNISLLLCSSLNKP-----------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLST----NIAESSITV 75 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~-----------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gldi 75 (132)
+.+.+.. -.|||++..... +.|+++..+|+. ..+.++.|..|+.+++|.. .++-||+|+
T Consensus 330 lvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDL 403 (1187)
T COG1110 330 LVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDL 403 (1187)
T ss_pred HHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCc
Confidence 3334444 479999994433 389999999974 2678999999999999764 478899999
Q ss_pred C-CccEEEecCCCcee
Q psy16353 76 P-DVKYVVDFCLTKVL 90 (132)
Q Consensus 76 ~-~v~~VI~~~~p~~~ 90 (132)
| -++|+|-+|.|+..
T Consensus 404 P~rirYaIF~GvPk~r 419 (1187)
T COG1110 404 PHRIRYAVFYGVPKFR 419 (1187)
T ss_pred hhheeEEEEecCCcee
Confidence 9 57899999999654
No 147
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.00 E-value=0.035 Score=46.64 Aligned_cols=67 Identities=13% Similarity=0.290 Sum_probs=56.2
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~VI 82 (132)
...++++.++|+.-+. .++++..+||+++..++.+.++....|+..|+|+|. .+...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4568999999988772 468999999999999999999999999999999997 445566778888766
No 148
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.46 E-value=0.061 Score=45.26 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 17 PNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
.+++||.+++++.+. .+..+..+||+++..+|.+.+.+...|+.+|+|+|..+-. +.+.++.+||
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 568999999988762 4678999999999999999999999999999999974432 4556777766
No 149
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.40 E-value=0.049 Score=46.80 Aligned_cols=110 Identities=15% Similarity=-0.012 Sum_probs=67.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC--CccEEEecC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP--DVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~--~v~~VI~~~ 85 (132)
.+++++|+++|.+..+ ....+. ..|.-. .+.+++++|++++..||++|+.+-+|+|+| +...||-.+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l-~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSHL-AQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcEE-EeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 5789999999988763 123332 223211 245578889888889999999999999997 355566677
Q ss_pred CCceeeecCCCCc----------ccccccccC--HhhHHHhhcccCCCC--CceEEE
Q psy16353 86 LTKVLTVAEGSNY----------SSLQLEWAS--ESSCQQRAGRVGRVS--EGRVYY 128 (132)
Q Consensus 86 ~p~~~~~~~~~~~----------~~~~~~~~s--~~~~~qR~GR~gR~~--~g~~~~ 128 (132)
+|-..--+|.... +.-..-..+ .-.+.|-+||.=|.. .|..+.
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 7754322322111 000000111 245788999998883 566543
No 150
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.20 E-value=0.071 Score=36.09 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHhhcCCCCce---EEEEeccc--cccccccCC--ccEEEecCCCceeeecCCCCcc--ccc-----------ccccCH
Q psy16353 49 DLVFTRFPPGVR---KIVLSTNI--AESSITVPD--VKYVVDFCLTKVLTVAEGSNYS--SLQ-----------LEWASE 108 (132)
Q Consensus 49 ~~~~~~f~~g~~---~vlvaT~~--~~~Gldi~~--v~~VI~~~~p~~~~~~~~~~~~--~~~-----------~~~~s~ 108 (132)
.++++.|++... .||+++.- ..+|+|+|+ ++.||-.++|-....+|..... .+. ..+...
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 456666665433 68888876 999999986 5688888988643333331110 000 011123
Q ss_pred hhHHHhhcccCCCC
Q psy16353 109 SSCQQRAGRVGRVS 122 (132)
Q Consensus 109 ~~~~qR~GR~gR~~ 122 (132)
....|-+||.=|..
T Consensus 114 ~~~~Qa~GR~iR~~ 127 (142)
T smart00491 114 RALAQAIGRAIRHK 127 (142)
T ss_pred HHHHHHhCccccCc
Confidence 55678899998884
No 151
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.04 E-value=0.064 Score=36.28 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCCCc-eEEEEeccccccccccCC--ccEEEecCCCceeeecCCCCcc--cc---------c--ccccCH
Q psy16353 45 KEQQDLVFTRFPPGV-RKIVLSTNIAESSITVPD--VKYVVDFCLTKVLTVAEGSNYS--SL---------Q--LEWASE 108 (132)
Q Consensus 45 ~~~r~~~~~~f~~g~-~~vlvaT~~~~~Gldi~~--v~~VI~~~~p~~~~~~~~~~~~--~~---------~--~~~~s~ 108 (132)
..+..++++.|.... ..||+++.-..+|+|+|+ ++.||-.++|-....+|..... .+ . ..+...
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 112 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDAM 112 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHHH
Confidence 334577788887654 379999988999999986 4678888988643333321110 00 0 001223
Q ss_pred hhHHHhhcccCCCC
Q psy16353 109 SSCQQRAGRVGRVS 122 (132)
Q Consensus 109 ~~~~qR~GR~gR~~ 122 (132)
....|-+||+=|..
T Consensus 113 ~~l~Qa~GR~iR~~ 126 (141)
T smart00492 113 RTLAQCVGRLIRGA 126 (141)
T ss_pred HHHHHHhCccccCc
Confidence 56788999998883
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.89 E-value=0.18 Score=42.01 Aligned_cols=108 Identities=17% Similarity=0.088 Sum_probs=68.5
Q ss_pred CCCCeEEEEeecCCCCC--------CCc-eEEEecCCCCHHHHHHHhhcCCCCce-EEEEeccccccccccCCc--cEEE
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQW-KIVVLHSSIPKEQQDLVFTRFPPGVR-KIVLSTNIAESSITVPDV--KYVV 82 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~-~~~~lh~~l~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gldi~~v--~~VI 82 (132)
..+++++||++|.+..+ ... ..+..+|..+.. +.++.|..+.- -++|+|.-+.+|+|+|+= +.||
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEE
Confidence 35779999999977662 111 244555554444 55666655444 899999999999999854 6788
Q ss_pred ecCCCceeeecCCCCccc---------------ccccccCHhhHHHhhcccCCC--CCceEEE
Q psy16353 83 DFCLTKVLTVAEGSNYSS---------------LQLEWASESSCQQRAGRVGRV--SEGRVYY 128 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~---------------~~~~~~s~~~~~qR~GR~gR~--~~g~~~~ 128 (132)
-.++|-.. |...... ....+...-...|-+||+=|. ..|.++.
T Consensus 554 I~~lPfp~---p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 554 IVGLPFPN---PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEecCCCC---CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 88888642 2222211 112222346778999999997 3455443
No 153
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.66 E-value=0.089 Score=43.85 Aligned_cols=67 Identities=12% Similarity=0.226 Sum_probs=54.8
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-cccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-AESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gldi~~v~~VI 82 (132)
...++++.++|+.-+. .++++..+||+++..++...++....|+..++|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3558899999887762 3789999999999999999999999999999999984 33456677788766
No 154
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.61 E-value=0.05 Score=47.33 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC--ccEE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD--VKYV 81 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~--v~~V 81 (132)
.+++++||++|.+..+ .++.+.. . +++...|.++++.|+.++..||++|+.+.+|+|+|+ +..|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEE
Confidence 5678999999886542 1122222 1 233345677888898888899999999999999986 4778
Q ss_pred EecCCCceeeecCCCCc----------ccccc--cccCHhhHHHhhcccCCCC--CceEE
Q psy16353 82 VDFCLTKVLTVAEGSNY----------SSLQL--EWASESSCQQRAGRVGRVS--EGRVY 127 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~----------~~~~~--~~~s~~~~~qR~GR~gR~~--~g~~~ 127 (132)
|-.++|-.+--+|.... +.-.. .|--.-...|-+||.=|.. .|..+
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 88888753211221111 00000 0112345688999998883 45544
No 155
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.45 E-value=0.1 Score=42.44 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=52.4
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
..+++|+.+++..-+. .+..+..+||+++..+|.+.+.+...|+.+|+|+|..+-. ..+.++.+||
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lII 98 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLII 98 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEE
Confidence 4568999999987662 3567889999999999999999999999999999975432 3456777766
No 156
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.43 E-value=0.23 Score=37.50 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=42.4
Q ss_pred HhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 51 VFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 51 ~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
..++|.+|+..|+|.|+.++.|+.+..-.-+-| ...++......+-|....+|-.||+-|.
T Consensus 53 e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRs 113 (278)
T PF13871_consen 53 EKQAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRS 113 (278)
T ss_pred HHHHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhcccccc
Confidence 357899999999999999999999964221211 1112222222333678999999999998
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.25 E-value=0.13 Score=43.52 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhc----CCCCceEEEEeccccccccccCC--ccE
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTR----FPPGVRKIVLSTNIAESSITVPD--VKY 80 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~----f~~g~~~vlvaT~~~~~Gldi~~--v~~ 80 (132)
.++.++||++|.+..+ .+.. +-.+|.. .+.++++. |..++..||++|..+..|+|+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3556899988876553 1222 2334543 34455544 44577789999999999999986 678
Q ss_pred EEecCCCceeeecCCCCc--cccc---cc-------ccCHhhHHHhhcccCCC--CCceEE
Q psy16353 81 VVDFCLTKVLTVAEGSNY--SSLQ---LE-------WASESSCQQRAGRVGRV--SEGRVY 127 (132)
Q Consensus 81 VI~~~~p~~~~~~~~~~~--~~~~---~~-------~~s~~~~~qR~GR~gR~--~~g~~~ 127 (132)
||-.++|-..--+|.... .... .. +--.-...|-+||.=|. ..|..+
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ 669 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVT 669 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEE
Confidence 988888854221222111 0000 00 11123567889999887 345544
No 158
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.16 Score=41.32 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=47.9
Q ss_pred EEEEeecCCCCC------------C-CceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccccc-cccCCccE
Q psy16353 20 SLLLCSSLNKPE------------V-QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAESS-ITVPDVKY 80 (132)
Q Consensus 20 ~ivF~~t~~~~~------------~-~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-ldi~~v~~ 80 (132)
+||+++|++-+. . ++.+..++|+++...+...++. | .++||+|+ ..+++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999998872 3 7899999999998887766655 5 79999997 45555 88888888
Q ss_pred EE
Q psy16353 81 VV 82 (132)
Q Consensus 81 VI 82 (132)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 66
No 159
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.45 E-value=0.17 Score=44.15 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=55.2
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~VI 82 (132)
...+++|.++|..-+. .++.+..++|..+..++.++++.+..|+..|+|+|. ++...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3568999999988772 367888899999999999999999999999999998 444557778888766
No 160
>KOG4439|consensus
Probab=92.40 E-value=0.66 Score=39.39 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=64.1
Q ss_pred CCCceEEEecCCCCHHHHHHHhhcCC---CCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccC
Q psy16353 31 EVQWKIVVLHSSIPKEQQDLVFTRFP---PGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWAS 107 (132)
Q Consensus 31 ~~~~~~~~lh~~l~~~~r~~~~~~f~---~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s 107 (132)
+.++....+||.....+|+.+++.|- +|.+-.|++=...+-|+++-+.+|+|-.|+-. ||..
T Consensus 768 ~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHW----NPaL----------- 832 (901)
T KOG4439|consen 768 KGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHW----NPAL----------- 832 (901)
T ss_pred hCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEeccc----CHHH-----------
Confidence 37889999999999999999999983 34545556667778899999999999888764 4431
Q ss_pred HhhHHHhhcccCCCCCceEEEEEe
Q psy16353 108 ESSCQQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 108 ~~~~~qR~GR~gR~~~g~~~~l~s 131 (132)
..++.-|+-|.|-..+-..++|..
T Consensus 833 EqQAcDRIYR~GQkK~V~IhR~~~ 856 (901)
T KOG4439|consen 833 EQQACDRIYRMGQKKDVFIHRLMC 856 (901)
T ss_pred HHHHHHHHHHhcccCceEEEEEEe
Confidence 234555777777766666666654
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.97 E-value=0.38 Score=40.71 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCCeEEEEeecCCCCC--------C--------CceEEEecCCCCHHHHHHHhhcCCC----CceEEEEec--ccccccc
Q psy16353 16 SPNISLLLCSSLNKPE--------V--------QWKIVVLHSSIPKEQQDLVFTRFPP----GVRKIVLST--NIAESSI 73 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~--------~~~~~~lh~~l~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gl 73 (132)
.|+.++||++|....+ . ...+..=..++ .++.++++.|+. +.-.|++|+ .-+.+|+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc--chHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 5889999999986542 1 11222111111 456777877743 455699888 8899999
Q ss_pred ccCC--ccEEEecCCCceeeecCCCCcc--ccc-----------ccccCHhhHHHhhcccCCCCC
Q psy16353 74 TVPD--VKYVVDFCLTKVLTVAEGSNYS--SLQ-----------LEWASESSCQQRAGRVGRVSE 123 (132)
Q Consensus 74 di~~--v~~VI~~~~p~~~~~~~~~~~~--~~~-----------~~~~s~~~~~qR~GR~gR~~~ 123 (132)
|+++ .+.||-.|+|-....+|..... .+. ....-.....|-+||+=|...
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 9986 6788889999743333322110 000 001122456789999999843
No 162
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.94 E-value=0.12 Score=45.18 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=43.0
Q ss_pred CCCeEEEEeecCCCCC---------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc
Q psy16353 16 SPNISLLLCSSLNKPE---------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA 69 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~ 69 (132)
..+++.+.++|.--+. ....+. +||.|+.++++++++++.+|..+|+|+|+..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4578888888865551 233444 9999999999999999999999999999854
No 163
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.36 E-value=0.25 Score=44.11 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~VI 82 (132)
...+++|.++|+.-+. .++.+..++|..+..++.++++..+.|..+|+|+|. ++...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999988762 356788899999999999999998888899999997 444456667777755
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.49 E-value=0.45 Score=40.13 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCCeEEEEeecCCCCC---------CC-ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE---------VQ-WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~-~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
..+++||.++....+. .+ -.+..+|+++++.+|.+.+.+...|+.+|+|-|-.|-- .-+++...||
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLII 262 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVA 262 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEE
Confidence 4668999999988872 23 56889999999999999999999999999999864422 2233555555
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=89.11 E-value=0.91 Score=39.10 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=40.2
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~ 76 (132)
.+.++||-..+.+..+ .+++-..|...-..+|-+.+.++-+. -.|-|||++|.||-||-
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~--gaVTiATNMAGRGTDIk 494 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQP--GAVTIATNMAGRGTDIK 494 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCC--CccccccccccCCcccc
Confidence 5678888888888774 56666666666554444444433333 24679999999999983
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.93 E-value=0.45 Score=40.49 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
..+++||.++.+.... -+.++..+|++|++.+|.+.+.+...|+.+|+|-|-.|-- .-++++..||
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLII 318 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGLII 318 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccEEE
Confidence 4678999998888772 5688999999999999999999999999999998864421 1234666555
No 167
>KOG0347|consensus
Probab=88.70 E-value=0.38 Score=39.72 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=39.8
Q ss_pred eEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 19 ISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 19 ~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
-+|||.+|++-+ ..++.+..+.|+|+.+.+++++.. ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 489999999987 389999999999999999999877 348999997
No 168
>PRK14701 reverse gyrase; Provisional
Probab=88.58 E-value=0.54 Score=43.46 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred CCCeEEEEeecCCCCC--------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc
Q psy16353 16 SPNISLLLCSSLNKPE--------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI 68 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~ 68 (132)
...+++|.++|++-+. .++.+..+||+++.+++.+.++.+..|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999988772 3578889999999999999999999998999999984
No 169
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=86.17 E-value=0.94 Score=38.95 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=59.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++-||++|....+ .+-+++.++|.-+..+- +.+ ++.+|++=|++...|+++....+=--|.+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 4566668888876652 56677777776555422 222 458999999999999999765431112222
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEE
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYM 129 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l 129 (132)
+...+-| ++.+..|.+||+........|..
T Consensus 355 k~~~~gp------------d~~s~~Q~lgRvR~l~~~ei~v~ 384 (824)
T PF02399_consen 355 KPMSYGP------------DMVSVYQMLGRVRSLLDNEIYVY 384 (824)
T ss_pred cCCCCCC------------cHHHHHHHHHHHHhhccCeEEEE
Confidence 2111222 35678999999955455554443
No 170
>KOG0701|consensus
Probab=85.95 E-value=0.17 Score=46.16 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=49.1
Q ss_pred HHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCC
Q psy16353 48 QDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGR 120 (132)
Q Consensus 48 r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR 120 (132)
+++++..|..-..++|++|.+++.|+|++-++.|+-.+.|.. ..+|+|+.||+-.
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~------------------~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTY------------------YRSYVQKKGRARA 397 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcch------------------HHHHHHhhccccc
Confidence 667888888889999999999999999999999998888874 6899999999844
No 171
>KOG0339|consensus
Probab=85.11 E-value=1.4 Score=36.23 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=47.7
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc--ccc----cccccCC
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN--IAE----SSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~--~~~----~Gldi~~ 77 (132)
+..-.+|.|+|++.+ .-+++++++||+++.-++.+-++ .| ..++|||+ +++ -++++..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g-~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EG-AEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cC-CeEEEechHHHHHHHHhhccccee
Confidence 344577888998877 27899999999999999987776 33 48999997 222 3677788
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+.+.|
T Consensus 371 vS~LV 375 (731)
T KOG0339|consen 371 VSYLV 375 (731)
T ss_pred eeEEE
Confidence 88754
No 172
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=84.46 E-value=2.2 Score=33.70 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc------cccccccCC
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI------AESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gldi~~ 77 (132)
.+.++||.++|++-+ ..++.+..++|+.+..++...+. +...|+|+|+- ....+++.+
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~ 147 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRA 147 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCccc
Confidence 346899999998765 25789999999999887776653 24589999971 223456677
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
++++|
T Consensus 148 v~~lV 152 (434)
T PRK11192 148 VETLI 152 (434)
T ss_pred CCEEE
Confidence 77655
No 173
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.43 E-value=0.92 Score=40.71 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=42.2
Q ss_pred CCeEEEEeecCCCCC------------CCceE---EEecCCCCHHHHHHHhhcCCCCceEEEEeccc
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKI---VVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI 68 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~---~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~ 68 (132)
..+++|.++|++-+. .++.+ ..+||+++..++.+.++.+.+|...|||+|+.
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 568999999998872 23333 35899999999988888888888899999983
No 174
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=83.65 E-value=2.6 Score=29.34 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----c-ccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----A-ESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gldi~~ 77 (132)
...+++|.+++++.+. .++.+..++|+.+..+..+.++ +...++|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999877662 4788899999998876655554 44689999951 2 22356677
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
++++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 77765
No 175
>PRK14873 primosome assembly protein PriA; Provisional
Probab=82.86 E-value=1.7 Score=36.75 Aligned_cols=70 Identities=14% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHhhcCCCCceEEEEeccccccccccCCccEE--EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceE
Q psy16353 50 LVFTRFPPGVRKIVLSTNIAESSITVPDVKYV--VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRV 126 (132)
Q Consensus 50 ~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V--I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~ 126 (132)
.+++.|. ++.+|||.|..+|.=+. +++..| +|.|.-- +.|.-+...- .-..+.|-+||+||. .+|.+
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L---~~pDfRA~Er-----~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALL---GRQDLRAAED-----TLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhh---cCCCcChHHH-----HHHHHHHHHHhhcCCCCCCEE
Confidence 3566675 47899999983322222 355554 4443211 1122121110 124557899999998 78887
Q ss_pred EEE
Q psy16353 127 YYM 129 (132)
Q Consensus 127 ~~l 129 (132)
+..
T Consensus 533 ~iq 535 (665)
T PRK14873 533 VVV 535 (665)
T ss_pred EEE
Confidence 654
No 176
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=82.22 E-value=3.2 Score=33.19 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=44.4
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc------ccccccccCCc
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN------IAESSITVPDV 78 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gldi~~v 78 (132)
+.++||.++|++-+. .++.+..++|+.+..++...+. +...|+|+|+ .....+++.++
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v 150 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQV 150 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccc
Confidence 347999999988762 4678889999988776544332 3568999996 22345677788
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
+++|
T Consensus 151 ~~lV 154 (456)
T PRK10590 151 EILV 154 (456)
T ss_pred eEEE
Confidence 8765
No 177
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.21 E-value=2.1 Score=35.45 Aligned_cols=62 Identities=8% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----cccc--ccccCC
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAES--SITVPD 77 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gldi~~ 77 (132)
..++||.++|++-+. .++.+..+||+.+...+.+.+.. ...|||+|+ .+.. .+++..
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhh
Confidence 358999999988772 57889999999998877666542 358999995 3322 355666
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
++++|
T Consensus 160 v~~lV 164 (572)
T PRK04537 160 CEICV 164 (572)
T ss_pred eeeeE
Confidence 66654
No 178
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.96 E-value=2.5 Score=35.51 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=45.2
Q ss_pred CCCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----cccc-ccccC
Q psy16353 16 SPNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAES-SITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gldi~ 76 (132)
...++||.++|++-+. .++.+..+||+.+.+.+...+.. ...|+|+|+ .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchh
Confidence 4458999999987762 47899999999888766555432 357999995 3333 36677
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
++.+||
T Consensus 149 ~l~~lV 154 (629)
T PRK11634 149 KLSGLV 154 (629)
T ss_pred hceEEE
Confidence 777765
No 179
>KOG1016|consensus
Probab=81.84 E-value=4.8 Score=35.11 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=57.8
Q ss_pred ceEEEecCCCCHHHHHHHhhcCCC--Cc-eEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhh
Q psy16353 34 WKIVVLHSSIPKEQQDLVFTRFPP--GV-RKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESS 110 (132)
Q Consensus 34 ~~~~~lh~~l~~~~r~~~~~~f~~--g~-~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~ 110 (132)
....-+.|..+..+|++.+.+|.+ |. +-++++|-....|+++-..+-+|-++.. |||.+. ++
T Consensus 762 ~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~----wnpchd-----------aq 826 (1387)
T KOG1016|consen 762 RSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDAC----WNPCHD-----------AQ 826 (1387)
T ss_pred cceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEee----cCcccc-----------ch
Confidence 344567788888999999998854 22 4678899999999998666555545443 566653 35
Q ss_pred HHHhhcccCCCCCceEEEEE
Q psy16353 111 CQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 111 ~~qR~GR~gR~~~g~~~~l~ 130 (132)
++-|+=|-|-..|..+|+|+
T Consensus 827 avcRvyrYGQ~KpcfvYRlV 846 (1387)
T KOG1016|consen 827 AVCRVYRYGQQKPCFVYRLV 846 (1387)
T ss_pred hhhhhhhhcCcCceeEEeeh
Confidence 55666666666788888875
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=81.66 E-value=2.6 Score=36.48 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=12.2
Q ss_pred EeccccccccccCC
Q psy16353 64 LSTNIAESSITVPD 77 (132)
Q Consensus 64 vaT~~~~~Gldi~~ 77 (132)
++|...+.|+|++.
T Consensus 431 ~~~~~~~e~~d~~~ 444 (814)
T TIGR00596 431 FEIIDEENDIDIYS 444 (814)
T ss_pred ccccccccccccch
Confidence 77888899999986
No 181
>KOG0331|consensus
Probab=81.58 E-value=1.9 Score=35.33 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=48.3
Q ss_pred CCCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccccc-cccC
Q psy16353 15 FSPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAESS-ITVP 76 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-ldi~ 76 (132)
.....+||.++|++-+. ..+.+.|+||+.+...+...++.- ..|+|+|+ .++.| +++.
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~g----vdiviaTPGRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERG----VDVVIATPGRLIDLLEEGSLNLS 238 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcC----CcEEEeCChHHHHHHHcCCcccc
Confidence 44668999999999882 557799999999998887766543 48999996 34443 6667
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
.+.|+|
T Consensus 239 ~v~ylV 244 (519)
T KOG0331|consen 239 RVTYLV 244 (519)
T ss_pred ceeEEE
Confidence 777766
No 182
>KOG0951|consensus
Probab=80.98 E-value=8.3 Score=35.30 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=66.1
Q ss_pred CCCCeEEEEeecCCCCC------------------------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEE
Q psy16353 15 FSPNISLLLCSSLNKPE------------------------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVL 64 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~------------------------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlv 64 (132)
.++++++||+++++++. ..+....=|-+|+..++.-+-.-|..|...|+|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 36789999999999981 122222227778887777677778889999887
Q ss_pred eccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 65 STNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 65 aT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
.+.- ..|+-.- ...||-.|-. .||-. +-....-+.+...|.+|+|.| .|+|+.+.
T Consensus 1437 ~s~~-~~~~~~~-~~lVvvmgt~---~ydg~----e~~~~~y~i~~ll~m~G~a~~--~~k~vi~~ 1491 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLK-AHLVVVMGTQ---YYDGK----EHSYEDYPIAELLQMVGLASG--AGKCVIMC 1491 (1674)
T ss_pred EEcc-ccccccc-ceEEEEecce---eeccc----ccccccCchhHHHHHhhhhcC--CccEEEEe
Confidence 7765 6666553 2334433321 12211 111222356899999999988 57777654
No 183
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=80.20 E-value=2.7 Score=33.54 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=45.3
Q ss_pred CeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccc-cccccCCc
Q psy16353 18 NISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAE-SSITVPDV 78 (132)
Q Consensus 18 ~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gldi~~v 78 (132)
.+++|.++|++-+. .++.+..++|+.+...+.+.++ ....|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 37899999997762 3788999999999887766554 3458999994 333 34677788
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
+++|
T Consensus 149 ~~lV 152 (460)
T PRK11776 149 NTLV 152 (460)
T ss_pred CEEE
Confidence 8766
No 184
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.18 E-value=3.7 Score=32.35 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=44.7
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----c-ccccccCCc
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----A-ESSITVPDV 78 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gldi~~v 78 (132)
..++||.++|++-+. .++.+..++|+.+...+.+.++ ....|+|+|+- + ...+++.++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcccccc
Confidence 468999999998772 5788999999988766555443 23589999972 1 235677778
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
.++|
T Consensus 159 ~~lV 162 (423)
T PRK04837 159 QVVV 162 (423)
T ss_pred cEEE
Confidence 8766
No 185
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.28 E-value=1.4 Score=35.39 Aligned_cols=52 Identities=29% Similarity=0.293 Sum_probs=44.5
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
..+.+||.+++++-+ ..++.+..++++.+.+++..++.....++.+++++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 456789999998765 2678899999999999999999888889999999997
No 186
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=76.97 E-value=3.7 Score=33.64 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=48.3
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc------ccccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN------IAESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gldi~~ 77 (132)
.++++|+..+|+--+. +.-.+..|.|..++++|.+.+.. .+|++||+ +.+==+|+.+
T Consensus 57 ~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 57 FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHH
Confidence 4557888888887662 45578899999999999988754 48999996 3444588989
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+.++|
T Consensus 132 v~~li 136 (542)
T COG1111 132 VSLLI 136 (542)
T ss_pred ceEEE
Confidence 99877
No 187
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=74.31 E-value=2.9 Score=36.62 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCC-CCHHHHHHHhh-cCCCCceEEEEecccccccccc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSS-IPKEQQDLVFT-RFPPGVRKIVLSTNIAESSITV 75 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~-l~~~~r~~~~~-~f~~g~~~vlvaT~~~~~Gldi 75 (132)
....+||-+.|.+..+ .+++.-.|++. ...+.-.++.. +-+. -.|-||||+|.||-||
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDI 505 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRK--GAVTIATNMAGRGTDI 505 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCC--CcEEEeccCCCCCcCE
Confidence 4667888888887663 67777778876 23232333443 3333 3688999999999988
No 188
>KOG0386|consensus
Probab=73.64 E-value=9 Score=34.08 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=56.5
Q ss_pred CCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCc---eEEEEeccccccccccCCccEEEecC
Q psy16353 17 PNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGV---RKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 17 ~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~---~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..++++|+.-..-. -.++...-+.|....++|-..++.|..-. ..+|++|-....|+++...+.||-+|
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifd 805 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFD 805 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEec
Confidence 45677777544333 17888899999999999998888886543 57889999999999999999999887
Q ss_pred CCc
Q psy16353 86 LTK 88 (132)
Q Consensus 86 ~p~ 88 (132)
--.
T Consensus 806 sdw 808 (1157)
T KOG0386|consen 806 SDW 808 (1157)
T ss_pred CCC
Confidence 543
No 189
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=72.58 E-value=2.2 Score=35.33 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
..+.++|.++++.-. ..++.+..+|++++..++.+++.....|..++++.|+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 356788888877554 2678899999999999999999999899999998885
No 190
>PRK09401 reverse gyrase; Reviewed
Probab=72.37 E-value=5 Score=36.27 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=38.7
Q ss_pred CCCeEEEEeecCCCCC------------CCceE--EEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKI--VVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~--~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
...+++|.++|++-+. .++.+ ...|++++..++.+..+.+..|...|+|+|+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 4678999999988872 34444 3445666677777777888888889999995
No 191
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=72.33 E-value=3.1 Score=34.69 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
.|+.+.++++.++.+++..++..+..|..++|.-++
T Consensus 80 ~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 80 AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 789999999999999999999999999999886654
No 192
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=71.86 E-value=11 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=37.6
Q ss_pred CceEEEecC--CCCHHHHHHHhhcCCCCceEEEEeccccccccccC------CccEEEecCC
Q psy16353 33 QWKIVVLHS--SIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP------DVKYVVDFCL 86 (132)
Q Consensus 33 ~~~~~~lh~--~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~------~v~~VI~~~~ 86 (132)
++.+.+-.| .|++ -.+......+|+..+.|-|.--.-++|+. .=+||||+|-
T Consensus 48 ql~i~pasGrrkLsp--t~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~ 107 (144)
T PF10657_consen 48 QLTISPASGRRKLSP--TPEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDK 107 (144)
T ss_pred EEEEecCCCccccCC--cHHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccC
Confidence 344444444 3444 35678889999999999999888888885 4468998863
No 193
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=71.27 E-value=9.3 Score=30.68 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=43.6
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc------cccccccCCc
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI------AESSITVPDV 78 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gldi~~v 78 (132)
..++|+.++|++-+. .++.+..++|+.+...+.+.+ ..+..+|+|+|+- ....+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~---~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL---EARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH---hCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 468999999998772 468899999998766554433 3345689999972 1224556677
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
++||
T Consensus 239 ~~lV 242 (475)
T PRK01297 239 EVMV 242 (475)
T ss_pred ceEE
Confidence 7655
No 194
>PTZ00110 helicase; Provisional
Probab=70.85 E-value=6.8 Score=32.26 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=43.6
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccccc-cccCCc
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAESS-ITVPDV 78 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-ldi~~v 78 (132)
...+||.++|++-+. .++.+..++|+.+...+...+.. ...|+|+|+ .++.+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 457899999988772 46788899999887766554432 248999996 34433 556677
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
+++|
T Consensus 279 ~~lV 282 (545)
T PTZ00110 279 TYLV 282 (545)
T ss_pred cEEE
Confidence 7655
No 195
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=67.95 E-value=14 Score=33.37 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=58.1
Q ss_pred CCCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEE
Q psy16353 15 FSPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYV 81 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~V 81 (132)
.+.+++.|.|+|.=-+ ..++++-.|..=.+.+++.++++..++|+.+|||-|= ++..++.+-|+..+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 3568999999997666 2677788888888999999999999999999999886 78888988888876
Q ss_pred E
Q psy16353 82 V 82 (132)
Q Consensus 82 I 82 (132)
|
T Consensus 721 I 721 (1139)
T COG1197 721 I 721 (1139)
T ss_pred E
Confidence 6
No 196
>KOG1513|consensus
Probab=67.85 E-value=6.1 Score=34.54 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=42.6
Q ss_pred hcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 53 TRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 53 ~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
++|..|+..|-|-+..++.||.+..-+-|+ |.+.++..-..-|-|....+|..||+-|.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~----------NqRRRvHiTLELPWSADrAIQQFGRTHRS 909 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQ----------NQRRRVHITLELPWSADRAIQQFGRTHRS 909 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhh----------hhhheEEEEEECCcchhHHHHHhcccccc
Confidence 678899988999999999999996544333 22333332233333678999999999998
No 197
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=65.12 E-value=3.5 Score=37.07 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=44.5
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCC--CceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPP--GVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~--g~~~vlvaT~ 67 (132)
.++.+||.+++++-+ ..++.+..+.++++..++.++++.+.. |+.++|++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 457899999998766 368999999999999999999888766 8889999998
No 198
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=64.56 E-value=8.7 Score=32.45 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCCeEEEEeecCCCCC-------CCc-eEEEecCCCCHHHHHHHhhcCCC----CceEEEEecccccccccc--------
Q psy16353 16 SPNISLLLCSSLNKPE-------VQW-KIVVLHSSIPKEQQDLVFTRFPP----GVRKIVLSTNIAESSITV-------- 75 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-------~~~-~~~~lh~~l~~~~r~~~~~~f~~----g~~~vlvaT~~~~~Gldi-------- 75 (132)
..++++|.+.|....+ ..+ ..+-+.|+.++ +...+++|++ |...||++|+.+-.|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5667888887776662 222 22344555432 3445666665 468999999999999999
Q ss_pred --CCccEEEecCCCceeeecCCC--------CcccccccccCHhhHHHhhcccCCC
Q psy16353 76 --PDVKYVVDFCLTKVLTVAEGS--------NYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 76 --~~v~~VI~~~~p~~~~~~~~~--------~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
+.+..||-.-+|-.. -+|.. +.+.....+-..-.+.|-+||.=|.
T Consensus 547 ~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~ 601 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRH 601 (636)
T ss_pred CCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeec
Confidence 347788877777432 23321 1111111122234567888888787
No 199
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=63.60 E-value=22 Score=26.11 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=43.8
Q ss_pred CceEEEecCCCCHHHHHHHhhc-CCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhH
Q psy16353 33 QWKIVVLHSSIPKEQQDLVFTR-FPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSC 111 (132)
Q Consensus 33 ~~~~~~lh~~l~~~~r~~~~~~-f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~ 111 (132)
++.+..++++.+.+. .-+.. ...|...|+|-=+.++||++++++....-.--++ ...++
T Consensus 110 ~~~v~~vNS~~~~~~--ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~------------------~~DTL 169 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS--LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSK------------------QYDTL 169 (239)
T ss_pred CceEEEEeCCCcccc--ccccccccCCceEEEECCccccCceeECCcEEEEecCCCc------------------hHHHH
Confidence 478888887655433 11111 1123478999999999999999987666444443 25677
Q ss_pred HHhhcccC
Q psy16353 112 QQRAGRVG 119 (132)
Q Consensus 112 ~qR~GR~g 119 (132)
.|+.-.-|
T Consensus 170 ~QmgRwFG 177 (239)
T PF10593_consen 170 MQMGRWFG 177 (239)
T ss_pred HHHhhccc
Confidence 88766555
No 200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=62.72 E-value=14 Score=31.45 Aligned_cols=66 Identities=12% Similarity=0.262 Sum_probs=53.7
Q ss_pred CCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEEE
Q psy16353 17 PNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYVV 82 (132)
Q Consensus 17 ~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~VI 82 (132)
..++.+-++|.=-+ ..++.+.-|.|++...+|++++++..+|+..++|-|= +....+.+.+..+||
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 44566666664333 1578999999999999999999999999999999887 567788888888877
No 201
>KOG0338|consensus
Probab=62.00 E-value=10 Score=31.54 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc-------cccccc
Q psy16353 15 FSPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA-------ESSITV 75 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~-------~~Gldi 75 (132)
..--++||.|+|++-+- ..+.+.-.-|+|+-..++.++..-+ +|+|||+-- ..++++
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~P----DIVIATPGRlIDHlrNs~sf~l 325 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRP----DIVIATPGRLIDHLRNSPSFNL 325 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCC----CEEEecchhHHHHhccCCCccc
Confidence 34568999999998771 4577777779999999998886654 899999732 246666
Q ss_pred CCccEEE
Q psy16353 76 PDVKYVV 82 (132)
Q Consensus 76 ~~v~~VI 82 (132)
.++.+.|
T Consensus 326 dsiEVLv 332 (691)
T KOG0338|consen 326 DSIEVLV 332 (691)
T ss_pred cceeEEE
Confidence 6666654
No 202
>KOG0389|consensus
Probab=60.33 E-value=11 Score=32.81 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCCeEEEEeecCCCC---------CCCceEEEecCCCCHHHHHHHhhcCCCC--ceEEEEecccc
Q psy16353 16 SPNISLLLCSSLNKP---------EVQWKIVVLHSSIPKEQQDLVFTRFPPG--VRKIVLSTNIA 69 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~---------~~~~~~~~lh~~l~~~~r~~~~~~f~~g--~~~vlvaT~~~ 69 (132)
.++.=||.|++-.-- -+.+.+.++||. ++||.++-..+..+ ..+|||+|=-+
T Consensus 447 ~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~l 509 (941)
T KOG0389|consen 447 NPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNL 509 (941)
T ss_pred CCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeec
Confidence 466667777653322 178999999999 67888877777655 68899888533
No 203
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=57.60 E-value=6.5 Score=32.78 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
..+.+||.+++++-. ..++.+..+++..+.+++..++.....|+.+++++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 356788888887655 2678889999999999988888888899999998885
No 204
>KOG0329|consensus
Probab=57.58 E-value=11 Score=28.64 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=47.6
Q ss_pred CCCeEEEEeecCCCC-------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc------cccccccC
Q psy16353 16 SPNISLLLCSSLNKP-------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI------AESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~-------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gldi~ 76 (132)
..-.++|.|.|++-+ -+++++..++|+++-+.-++.++. ...|+|.|+- -++.+++.
T Consensus 109 g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk 184 (387)
T KOG0329|consen 109 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLK 184 (387)
T ss_pred CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchh
Confidence 344677888888766 188999999999998877777766 4589999982 35678888
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
++.+-|
T Consensus 185 ~vkhFv 190 (387)
T KOG0329|consen 185 NVKHFV 190 (387)
T ss_pred hcceee
Confidence 888744
No 205
>KOG0350|consensus
Probab=56.13 E-value=21 Score=29.53 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCeEEEEeecCCCC------------CCCceEEEecCCCCHHH-HHHHhhcCCCCceEEEEeccc-------cccccccC
Q psy16353 17 PNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQ-QDLVFTRFPPGVRKIVLSTNI-------AESSITVP 76 (132)
Q Consensus 17 ~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~-r~~~~~~f~~g~~~vlvaT~~-------~~~Gldi~ 76 (132)
-=+++|.++|++-+ ..++.|..+.|.-+-+. ..+.....++...+|||+|+. ...|+++.
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk 294 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLK 294 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchh
Confidence 34788888888766 37888888888766654 333444555567799999984 24688888
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
+.+|.|
T Consensus 295 ~LrfLV 300 (620)
T KOG0350|consen 295 HLRFLV 300 (620)
T ss_pred hceEEE
Confidence 888754
No 206
>PRK13766 Hef nuclease; Provisional
Probab=55.59 E-value=18 Score=30.92 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=43.2
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc------cccccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI------AESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gldi~~ 77 (132)
..+++|+.++|+..++ .+..+..++|+.+..+|.+.+.. ..|+++|.- ...-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4678999999975541 23478889999999888777653 379999962 223345667
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+++||
T Consensus 132 ~~liV 136 (773)
T PRK13766 132 VSLLI 136 (773)
T ss_pred CcEEE
Confidence 77655
No 207
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=53.15 E-value=43 Score=25.41 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=44.3
Q ss_pred cCCCCHHH-HHHHhhcCCC---CceEEEEeccccccccccCCccEEEecCCCceeeecCCCC
Q psy16353 40 HSSIPKEQ-QDLVFTRFPP---GVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSN 97 (132)
Q Consensus 40 h~~l~~~~-r~~~~~~f~~---g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~ 97 (132)
.+.|+..+ |+.+.+.|.. ....+.+-+--...|+-+ |.++|.|..+-.++.|.|..+
T Consensus 139 Ts~ls~~~Lr~~i~~~f~~~~~~~~~v~v~SFGFKyGiP~-DADlVFDVRfLPNP~y~peLR 199 (286)
T COG1660 139 TSELSVHELRERIRTRFLGKEERTLTVTVESFGFKYGIPI-DADLVFDVRFLPNPHYDPELR 199 (286)
T ss_pred cccCCHHHHHHHHHHHHccCCCcceEEEEEecccccCCCC-CcceEEEecccCCCccccccC
Confidence 45677776 6666666663 246788888888899887 889999999998999998854
No 208
>KOG0921|consensus
Probab=52.39 E-value=0.93 Score=39.65 Aligned_cols=95 Identities=9% Similarity=-0.162 Sum_probs=77.5
Q ss_pred ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHH
Q psy16353 34 WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQ 113 (132)
Q Consensus 34 ~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~q 113 (132)
......|..+...+...+.+-...+.......|...+.-+...+..+++++.-.....+...+-.+.....|-+.....|
T Consensus 683 q~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv 762 (1282)
T KOG0921|consen 683 QLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV 762 (1282)
T ss_pred hcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee
Confidence 35567788888888888888888888999999999988888888889999888877777666677777778888888999
Q ss_pred hhcccCCCCCceEEE
Q psy16353 114 RAGRVGRVSEGRVYY 128 (132)
Q Consensus 114 R~GR~gR~~~g~~~~ 128 (132)
|.|++++...+.||.
T Consensus 763 R~G~~f~lcs~arF~ 777 (1282)
T KOG0921|consen 763 RPGFCFHLCSRARFE 777 (1282)
T ss_pred cccccccccHHHHHH
Confidence 999999886665554
No 209
>KOG0336|consensus
Probab=50.84 E-value=36 Score=27.71 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=45.1
Q ss_pred CCCCeEEEEeecCCCC-----------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------ccccccCC
Q psy16353 15 FSPNISLLLCSSLNKP-----------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------ESSITVPD 77 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~-----------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gldi~~ 77 (132)
.....++|+.+|++-+ ..++..+++||+-...++-+-+ +. ...+++||+-- .--+++..
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~l---kr-gveiiiatPgrlndL~~~n~i~l~s 367 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDL---KR-GVEIIIATPGRLNDLQMDNVINLAS 367 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHH---hc-CceEEeeCCchHhhhhhcCeeeeee
Confidence 3456789999998876 2899999999998777665544 33 35889998732 23466667
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+.|+|
T Consensus 368 iTYlV 372 (629)
T KOG0336|consen 368 ITYLV 372 (629)
T ss_pred eEEEE
Confidence 77755
No 210
>KOG1001|consensus
Probab=47.87 E-value=1.3 Score=37.49 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=71.4
Q ss_pred eEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCce-E-EEEeccccccccccCCccEEEecCCCc
Q psy16353 19 ISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVR-K-IVLSTNIAESSITVPDVKYVVDFCLTK 88 (132)
Q Consensus 19 ~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~-~-vlvaT~~~~~Gldi~~v~~VI~~~~p~ 88 (132)
+++||+.-..-. ..++....+-|.|....|.+.+..|.++.. + .+++.-+...|+++-...+|+-.|+-.
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 788887654433 267777788899999999999999986542 3 447777889999998888888766543
Q ss_pred eeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 89 VLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
||. ..++.+-|+-|.|..++-.+.++.
T Consensus 621 ----np~-----------~eeQaidR~hrigq~k~v~v~r~~ 647 (674)
T KOG1001|consen 621 ----NPA-----------VEEQAIDRAHRIGQTKPVKVSRFI 647 (674)
T ss_pred ----ChH-----------HHHHHHHHHHHhcccceeeeeeeh
Confidence 332 356777788888877777766654
No 211
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=43.84 E-value=40 Score=29.22 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI 68 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~ 68 (132)
....+.|.++|..-+. .++.+..+.|+++.+++...+. ..|+++|+.
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3456888888877762 6899999999999998887763 489999986
No 212
>KOG0330|consensus
Probab=43.10 E-value=27 Score=28.06 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=46.4
Q ss_pred cCCCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc-------ccccc
Q psy16353 14 TFSPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA-------ESSIT 74 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~-------~~Gld 74 (132)
.-+...++|.++|++-+ ..|+.+..+-|+++...+...+ ++ +..|||||+-. ..|+.
T Consensus 126 ~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L--~k--kPhilVaTPGrL~dhl~~Tkgf~ 201 (476)
T KOG0330|consen 126 EPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL--SK--KPHILVATPGRLWDHLENTKGFS 201 (476)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh--hc--CCCEEEeCcHHHHHHHHhccCcc
Confidence 34557899999999887 3789999999999887654433 22 35789999843 35666
Q ss_pred cCCccEEE
Q psy16353 75 VPDVKYVV 82 (132)
Q Consensus 75 i~~v~~VI 82 (132)
+..++|.|
T Consensus 202 le~lk~LV 209 (476)
T KOG0330|consen 202 LEQLKFLV 209 (476)
T ss_pred HHHhHHHh
Confidence 66666543
No 213
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=42.51 E-value=45 Score=27.23 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=41.1
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccc-cccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAE-SSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gldi~~ 77 (132)
...+++|.++|++-+. .++.+..+.|+.+..++...+ ..| ..|+|+|+ ++. ..+.+.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l---~~~-~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI---QQG-VELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh---cCC-CCEEEECHHHHHHHHHcCCccchh
Confidence 4568999999987762 356777788776655443322 222 48999994 333 3566777
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+.++|
T Consensus 271 v~~lV 275 (518)
T PLN00206 271 VSVLV 275 (518)
T ss_pred eeEEE
Confidence 77755
No 214
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=41.40 E-value=36 Score=29.03 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=41.3
Q ss_pred CCCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccccccccc
Q psy16353 15 FSPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITV 75 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi 75 (132)
.....++|.++|.+-+. .++.+..++|++++++|+..+ ...|+++|+ .|-|+|.
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~-~e~~FDy 207 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN-KELVFDY 207 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC-Cchhhhh
Confidence 34568999999988772 689999999999988777654 237888886 5666665
No 215
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=36.11 E-value=41 Score=22.20 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHH-HHHHHhhcCCCCceEEEEeccc-cc-----cccccC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKE-QQDLVFTRFPPGVRKIVLSTNI-AE-----SSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~-~r~~~~~~f~~g~~~vlvaT~~-~~-----~Gldi~ 76 (132)
...++++.+++++.++ .++.+..+|++.+.. +....+ .+...++|+|.- +. ..+++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 3458999999887662 467899999998865 333333 445688888862 11 123556
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
.+++||
T Consensus 119 ~~~~iV 124 (169)
T PF00270_consen 119 RLSLIV 124 (169)
T ss_dssp TESEEE
T ss_pred cceeec
Confidence 677766
No 216
>PHA03371 circ protein; Provisional
Probab=36.04 E-value=42 Score=24.75 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=34.7
Q ss_pred ccccccccCCccEE-E--ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 68 IAESSITVPDVKYV-V--DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 68 ~~~~Gldi~~v~~V-I--~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
++.|-+|+|+=+.+ | |++.+.... ...+....+...|+|.+|||-=..++.-|.+|
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~-------g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iy 87 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNF-------GKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIY 87 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccce-------eeEecCCCCcceeeeeeehhhccCCCceEEEE
Confidence 46778899876665 5 555554321 01111122467899999999544777777766
No 217
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=35.13 E-value=73 Score=18.15 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=24.8
Q ss_pred ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccc
Q psy16353 34 WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESS 72 (132)
Q Consensus 34 ~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 72 (132)
..++.+.|.....+..+.+..+... .+|++++|-=..|
T Consensus 23 ~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 23 GNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 4667776766555566666665544 6799999854444
No 218
>KOG0385|consensus
Probab=34.88 E-value=54 Score=28.77 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=36.9
Q ss_pred CCCCeEEEEeecCCCC---------CCCceEEEecCCCCHHHHHHHhhcC-CCCceEEEEec
Q psy16353 15 FSPNISLLLCSSLNKP---------EVQWKIVVLHSSIPKEQQDLVFTRF-PPGVRKIVLST 66 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~---------~~~~~~~~lh~~l~~~~r~~~~~~f-~~g~~~vlvaT 66 (132)
..++.-||.|+--.-. -+.++++.+||+ +++|....+.+ ..|...|+|+|
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeeh
Confidence 3577888888643222 389999999999 68888777664 56678888887
No 219
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=33.22 E-value=59 Score=28.84 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=37.0
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI 68 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~ 68 (132)
....+.|.++|..-+ ..|+.+..++|+++.++|...+ ...|+++|+-
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 345688888887766 2689999999999999887776 2589999983
No 220
>KOG0351|consensus
Probab=31.40 E-value=56 Score=29.14 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCC--ceEEEEecc
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPG--VRKIVLSTN 67 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g--~~~vlvaT~ 67 (132)
.++.+.+|++.+...+|..+++.+..| .++++-.|+
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 789999999999999999999999999 889998887
No 221
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=31.22 E-value=1.5e+02 Score=22.61 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=41.6
Q ss_pred cCCCCHHH-HHHHhhcCCC---CceEEEEeccccccccccCCccEEEecCCCceeeecCCCC
Q psy16353 40 HSSIPKEQ-QDLVFTRFPP---GVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSN 97 (132)
Q Consensus 40 h~~l~~~~-r~~~~~~f~~---g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~ 97 (132)
.++|+..+ |..+.+.|.. ....|.|.+--...|+- ++.++|+|..+-.++.|.|..+
T Consensus 138 Ts~l~~~~Lr~~i~~~~~~~~~~~l~v~i~SFGfK~GiP-~dAD~VfDvRfLpNP~y~~~Lr 198 (284)
T PF03668_consen 138 TSNLSVHQLRERIRERFGGDKESRLTVTIQSFGFKYGIP-PDADLVFDVRFLPNPYYVPELR 198 (284)
T ss_pred CCCCCHHHHHHHHHHHhccCCCCceEEEEEEeccccCCC-CCCCEEEEcCcCCCCCCChhhh
Confidence 45677766 5555555543 24577788888888876 4899999999988898888753
No 222
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=30.94 E-value=79 Score=28.39 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=36.0
Q ss_pred ceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC
Q psy16353 59 VRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV 121 (132)
Q Consensus 59 ~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~ 121 (132)
..+.|++-+.+..|-|-|++-.+.-..-.. |...-.|-+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~------------------s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSG------------------SETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCC------------------chHHHHHHhccceec
Confidence 579999999999999999987665443222 456778999999887
No 223
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=29.19 E-value=69 Score=27.66 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccc---------ccc
Q psy16353 17 PNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESS---------ITV 75 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~G---------ldi 75 (132)
..++|+.++|++-+. .++.+..++|+.+.++|..+.+ ...++|+|+ .+..+ ..+
T Consensus 81 ~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~l 155 (742)
T TIGR03817 81 RATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARFL 155 (742)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHHH
Confidence 458999999988772 3688889999999877654432 247999996 22222 125
Q ss_pred CCccEEE
Q psy16353 76 PDVKYVV 82 (132)
Q Consensus 76 ~~v~~VI 82 (132)
.++++||
T Consensus 156 ~~l~~vV 162 (742)
T TIGR03817 156 RRLRYVV 162 (742)
T ss_pred hcCCEEE
Confidence 6778766
No 224
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=28.38 E-value=1.1e+02 Score=27.41 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCc
Q psy16353 55 FPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEG 124 (132)
Q Consensus 55 f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g 124 (132)
.+....++||.+|.+-.|+|.|.+..+. .|.|-. .=..+|-+.|+=|.-++
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk------------------~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLK------------------YHNLIQAISRTNRVFPG 639 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccceEE-eccccc------------------cchHHHHHHHhccCCCC
Confidence 4556789999999999999999887654 444532 23677877777777433
No 225
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.49 E-value=30 Score=20.57 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=10.9
Q ss_pred HhhHHHhhcc-cCCC
Q psy16353 108 ESSCQQRAGR-VGRV 121 (132)
Q Consensus 108 ~~~~~qR~GR-~gR~ 121 (132)
.+++.||.|+ +||.
T Consensus 32 ~~Ei~Qr~GkkiGRD 46 (70)
T PF04210_consen 32 NAEIAQRAGKKIGRD 46 (70)
T ss_pred HHHHHHHHhHHhhhH
Confidence 4789999998 5664
No 226
>KOG0352|consensus
Probab=26.80 E-value=25 Score=28.73 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=41.5
Q ss_pred cccccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCC--ceEEEEecc
Q psy16353 10 SPHATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPG--VRKIVLSTN 67 (132)
Q Consensus 10 ~~~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g--~~~vlvaT~ 67 (132)
++-.....+.+|||.+-..-. ...+++-.|++.|+..||.+++-++..- ..++|--|+
T Consensus 54 QLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 54 QLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred hchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 333444566788887765444 2677888999999999999998776543 357787666
No 227
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=25.93 E-value=2.2e+02 Score=19.39 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=43.8
Q ss_pred cccCCCCeEEEEeecCCCC----C----------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccccc
Q psy16353 12 HATFSPNISLLLCSSLNKP----E----------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAES 71 (132)
Q Consensus 12 ~~~~~~~~~ivF~~t~~~~----~----------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 71 (132)
.....+++++|-|+.-.-. . .-+++..++..-+.-+..+++.+-.+|+.=.+|.|+.-.-
T Consensus 10 ~~de~Ek~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~~~V~eR~~l~~~~~grsFTvI~~elp~g 89 (146)
T PF04763_consen 10 LHDEKEKNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSESMCVKERQILNDDSQGRSFTVILTELPEG 89 (146)
T ss_pred eeccccCcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCCcchHHHHHhcCCccCceEEEEEEcCCCC
Confidence 3445678888888732222 1 4567788887665555566777777888888888876666
Q ss_pred ccccCC
Q psy16353 72 SITVPD 77 (132)
Q Consensus 72 Gldi~~ 77 (132)
+-||..
T Consensus 90 ~~DiR~ 95 (146)
T PF04763_consen 90 SADIRC 95 (146)
T ss_pred ccchhh
Confidence 655543
No 228
>KOG0334|consensus
Probab=25.42 E-value=1.2e+02 Score=27.31 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=37.5
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
...-+||.++|++.+ ..++.+++.||+-...++.. ..+.| ..|+|||.
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qia---elkRg-~eIvV~tp 496 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIA---ELKRG-AEIVVCTP 496 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHH---HHhcC-CceEEecc
Confidence 466789999999988 27899999999988776554 44555 58889986
No 229
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=24.66 E-value=1.3e+02 Score=18.01 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=24.5
Q ss_pred ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccc
Q psy16353 34 WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESS 72 (132)
Q Consensus 34 ~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 72 (132)
..+++.+|..-.++..+.+.+. ...|+++||.=..|
T Consensus 23 ~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~D~aG 58 (81)
T cd01027 23 AEIIETNGSIINKETIELIKKA---YRGVIILTDPDRKG 58 (81)
T ss_pred ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECCCHHH
Confidence 4777778776665666666666 46899999844433
No 230
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=23.35 E-value=1.5e+02 Score=20.88 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=30.6
Q ss_pred ccccccccCCccEEE---ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 68 IAESSITVPDVKYVV---DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 68 ~~~~Gldi~~v~~VI---~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
++.|-+|+|+=+.+- |.+.|....|.+. ..+...++|.+|||--..++.-|.+|
T Consensus 8 LaGR~iDLPgG~el~I~~~~g~~~~~~f~~~---------g~~~~~~~~~IGRA~a~g~~RkF~iy 64 (177)
T PF07013_consen 8 LAGRTIDLPGGDELRISANTGRPNTGKFVRS---------GSSRLMPVHFIGRAYAIGSCRKFVIY 64 (177)
T ss_pred hcCcceecCCCCeEEEecCCCCceEEEEecC---------CCCceehhheehhhhccCCCceEEEE
Confidence 566777887555432 3333311112111 12457889999998544777777665
No 231
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=23.02 E-value=1e+02 Score=27.45 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=37.9
Q ss_pred ceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC---CCceEE
Q psy16353 59 VRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV---SEGRVY 127 (132)
Q Consensus 59 ~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~---~~g~~~ 127 (132)
.++.|.+-..+..|-|=|+|=.+.-..-.. |..+=.|-+||.-|. +.|.-.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~------------------SeiSK~QeVGRGLRLaVNe~G~RV 536 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSG------------------SEISKLQEVGRGLRLAVNENGERV 536 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCC------------------cchHHHHHhccceeeeecccccee
Confidence 379999999999999999986665332111 457789999999886 456543
No 232
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=21.76 E-value=65 Score=28.68 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=17.9
Q ss_pred CHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 107 SESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 107 s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|..-=.|=+||+||. .||..-+++|
T Consensus 661 SRRIDNQLRGRaGRQGDPGsSrFflS 686 (939)
T PRK12902 661 SRRVDNQLRGRAGRQGDPGSTRFFLS 686 (939)
T ss_pred cchHHHHhhcccccCCCCCcceEEEE
Confidence 444557889999999 7887555543
No 233
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=21.54 E-value=2.3e+02 Score=18.07 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCceEEEecCCCCHHHHH----HHhhcCCCCceEEEEecccc
Q psy16353 32 VQWKIVVLHSSIPKEQQD----LVFTRFPPGVRKIVLSTNIA 69 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~----~~~~~f~~g~~~vlvaT~~~ 69 (132)
.++.++.++-+.+.++-. +.++.+.++ -.+||-||+.
T Consensus 28 ~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~-~~vivltDl~ 68 (116)
T TIGR00824 28 NNVGAVPFVPGENAETLQEKYNAALADLDTE-EEVLFLVDIF 68 (116)
T ss_pred CCeEEEEcCCCcCHHHHHHHHHHHHHhcCCC-CCEEEEEeCC
Confidence 468888888887776533 335556444 4899999984
No 234
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=21.42 E-value=72 Score=24.29 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCCceEEEEeccccc
Q psy16353 45 KEQQDLVFTRFPPGVRKIVLSTNIAE 70 (132)
Q Consensus 45 ~~~r~~~~~~f~~g~~~vlvaT~~~~ 70 (132)
+++|+..++.++.|..+++|+||=+-
T Consensus 220 ~~d~~~L~~~l~~G~id~~i~SDHaP 245 (335)
T cd01294 220 PEDREALRKAATSGHPKFFLGSDSAP 245 (335)
T ss_pred HHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 67789999999999999889999654
No 235
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=21.27 E-value=79 Score=27.78 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-ccc---c----cccCCccEEE
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-AES---S----ITVPDVKYVV 82 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-~~~---G----ldi~~v~~VI 82 (132)
.|+.+..-||+.++.+|++...+. ..||++|+= +.- + =.+.+|++||
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~P----PdILiTTPEsL~lll~~~~~r~~l~~vr~VI 154 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNP----PHILITTPESLAILLNSPKFRELLRDVRYVI 154 (814)
T ss_pred cCCccceecCCCChHHhhhccCCC----CcEEEeChhHHHHHhcCHHHHHHhcCCcEEE
Confidence 677788889999999998766555 489999972 111 1 2245888887
No 236
>KOG2340|consensus
Probab=20.34 E-value=1.6e+02 Score=24.93 Aligned_cols=72 Identities=21% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCeEEEEeecCCCC--------CCCceEEEe--cCCCCHHHHHHHhhcCCCCceEEEEecccc--ccccccCCccEEEec
Q psy16353 17 PNISLLLCSSLNKP--------EVQWKIVVL--HSSIPKEQQDLVFTRFPPGVRKIVLSTNIA--ESSITVPDVKYVVDF 84 (132)
Q Consensus 17 ~~~~ivF~~t~~~~--------~~~~~~~~l--h~~l~~~~r~~~~~~f~~g~~~vlvaT~~~--~~Gldi~~v~~VI~~ 84 (132)
..-+||+.++--+- +.++....+ |+..++-.|++ .-|-.|...+++-|.-+ =+-.++-+|+-||-|
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR--~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRAR--ELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHH--HHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 44567877765443 133444333 33333333433 44667778999998644 356788899999999
Q ss_pred CCCcee
Q psy16353 85 CLTKVL 90 (132)
Q Consensus 85 ~~p~~~ 90 (132)
.+|..+
T Consensus 630 qpP~~P 635 (698)
T KOG2340|consen 630 QPPNNP 635 (698)
T ss_pred cCCCCc
Confidence 999865
No 237
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=20.32 E-value=1.2e+02 Score=27.22 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=34.4
Q ss_pred eEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc
Q psy16353 19 ISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI 68 (132)
Q Consensus 19 ~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~ 68 (132)
.++|.++|++-+. .++.+.++.|+++.+++.+.+ ...|+++|+-
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 4777788877662 578999999999999887655 2579999984
Done!