Query psy16353
Match_columns 132
No_of_seqs 156 out of 1343
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:12:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eaq_A Heat resistant RNA depe 99.9 9.3E-28 3.2E-32 171.4 5.4 104 11-132 25-137 (212)
2 2xau_A PRE-mRNA-splicing facto 99.9 6.6E-28 2.2E-32 199.4 5.1 119 14-132 300-442 (773)
3 2rb4_A ATP-dependent RNA helic 99.9 2.1E-26 7.3E-31 159.5 7.2 109 11-131 28-145 (175)
4 2hjv_A ATP-dependent RNA helic 99.9 1.7E-26 5.7E-31 158.5 6.0 101 13-131 31-140 (163)
5 3i32_A Heat resistant RNA depe 99.9 1E-26 3.5E-31 174.1 5.2 103 12-132 23-134 (300)
6 1t5i_A C_terminal domain of A 99.9 2.6E-26 8.8E-31 159.1 5.5 103 11-131 25-136 (172)
7 1fuk_A Eukaryotic initiation f 99.9 3.2E-26 1.1E-30 157.3 5.1 104 11-132 24-136 (165)
8 2p6n_A ATP-dependent RNA helic 99.9 1.5E-25 5.1E-30 157.9 5.1 98 17-132 54-160 (191)
9 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.4E-25 8.1E-30 156.0 4.2 99 16-132 45-152 (185)
10 2yjt_D ATP-dependent RNA helic 99.8 4.3E-26 1.5E-30 157.4 0.0 104 10-131 23-135 (170)
11 2db3_A ATP-dependent RNA helic 99.9 2.1E-24 7.3E-29 167.9 6.7 96 18-131 301-405 (434)
12 3fht_A ATP-dependent RNA helic 99.9 1.5E-23 5.1E-28 160.0 5.7 105 15-131 264-377 (412)
13 2i4i_A ATP-dependent RNA helic 99.9 1.4E-23 4.9E-28 160.6 5.6 99 16-132 275-382 (417)
14 2v1x_A ATP-dependent DNA helic 99.9 3.6E-23 1.2E-27 166.9 7.4 98 16-131 266-372 (591)
15 3eiq_A Eukaryotic initiation f 99.9 9.2E-24 3.2E-28 161.4 3.2 102 13-132 276-386 (414)
16 1oyw_A RECQ helicase, ATP-depe 99.9 3.4E-23 1.2E-27 164.8 6.5 99 15-131 234-341 (523)
17 2j0s_A ATP-dependent RNA helic 99.9 1.6E-23 5.4E-28 160.4 4.4 100 15-132 274-382 (410)
18 3i5x_A ATP-dependent RNA helic 99.9 6.4E-23 2.2E-27 163.3 7.6 100 15-132 337-448 (563)
19 1s2m_A Putative ATP-dependent 99.9 5.8E-23 2E-27 156.7 5.9 100 15-132 256-364 (400)
20 3sqw_A ATP-dependent RNA helic 99.9 1.1E-22 3.9E-27 163.0 7.6 100 15-132 286-397 (579)
21 3pey_A ATP-dependent RNA helic 99.9 8.8E-23 3E-27 154.6 6.6 105 15-131 241-354 (395)
22 1xti_A Probable ATP-dependent 99.9 1.1E-22 3.7E-27 154.4 7.0 100 15-132 248-356 (391)
23 3fmp_B ATP-dependent RNA helic 99.9 1.5E-23 5E-28 164.3 0.0 108 12-131 328-444 (479)
24 1hv8_A Putative ATP-dependent 99.9 2.8E-22 9.5E-27 150.5 6.5 100 15-132 236-344 (367)
25 4a2p_A RIG-I, retinoic acid in 99.8 2.6E-22 9E-27 158.4 4.0 99 15-132 388-507 (556)
26 2jlq_A Serine protease subunit 99.8 1.7E-21 5.9E-26 152.4 7.7 110 16-131 187-309 (451)
27 1fuu_A Yeast initiation factor 99.8 9E-23 3.1E-27 154.8 0.0 101 14-132 256-365 (394)
28 3rc3_A ATP-dependent RNA helic 99.8 1.3E-21 4.5E-26 159.8 6.5 109 18-131 321-443 (677)
29 2z0m_A 337AA long hypothetical 99.8 1.9E-21 6.4E-26 144.6 6.5 100 14-131 217-321 (337)
30 2ykg_A Probable ATP-dependent 99.8 2.5E-22 8.5E-27 163.2 1.4 98 16-132 397-515 (696)
31 2z83_A Helicase/nucleoside tri 99.8 1.5E-21 5.2E-26 153.1 4.7 110 17-132 190-312 (459)
32 1yks_A Genome polyprotein [con 99.8 1.6E-21 5.3E-26 152.4 3.6 110 16-130 176-296 (440)
33 1wp9_A ATP-dependent RNA helic 99.8 2.4E-21 8.4E-26 149.0 4.6 100 15-132 359-474 (494)
34 3o8b_A HCV NS3 protease/helica 99.8 4E-21 1.4E-25 156.3 6.0 109 14-132 393-513 (666)
35 2whx_A Serine protease/ntpase/ 99.8 3.1E-21 1.1E-25 156.3 4.7 111 16-131 354-476 (618)
36 3tbk_A RIG-I helicase domain; 99.8 1.4E-21 4.8E-26 153.8 2.6 99 15-132 387-506 (555)
37 1c4o_A DNA nucleotide excision 99.8 8.2E-21 2.8E-25 154.9 7.2 103 16-131 438-548 (664)
38 2d7d_A Uvrabc system protein B 99.8 6E-21 2.1E-25 155.6 6.3 104 16-132 444-555 (661)
39 2va8_A SSO2462, SKI2-type heli 99.8 6.2E-21 2.1E-25 156.0 6.0 91 35-132 314-407 (715)
40 3fho_A ATP-dependent RNA helic 99.8 1.5E-21 5E-26 154.7 1.7 105 15-131 355-468 (508)
41 2wv9_A Flavivirin protease NS2 99.8 1.5E-20 5.1E-25 153.5 6.5 110 16-130 409-530 (673)
42 4a2q_A RIG-I, retinoic acid in 99.8 7.3E-21 2.5E-25 157.5 4.1 99 15-132 629-748 (797)
43 4gl2_A Interferon-induced heli 99.8 1.5E-20 5.1E-25 152.8 5.3 94 17-130 400-515 (699)
44 4a2w_A RIG-I, retinoic acid in 99.8 1.3E-20 4.5E-25 158.5 3.2 99 15-132 629-748 (936)
45 3l9o_A ATP-dependent RNA helic 99.8 1.6E-20 5.6E-25 160.0 3.4 87 36-132 507-596 (1108)
46 2v6i_A RNA helicase; membrane, 99.8 2.9E-20 9.9E-25 144.8 3.9 109 16-130 170-287 (431)
47 2p6r_A Afuhel308 helicase; pro 99.8 1.9E-20 6.4E-25 153.1 2.8 106 16-132 241-387 (702)
48 2zj8_A DNA helicase, putative 99.8 3.3E-20 1.1E-24 152.0 3.7 107 16-132 236-386 (720)
49 1tf5_A Preprotein translocase 99.8 1.9E-19 6.4E-24 148.8 7.5 96 16-131 431-543 (844)
50 3oiy_A Reverse gyrase helicase 99.8 8.6E-20 3E-24 140.3 3.4 90 17-130 252-362 (414)
51 2eyq_A TRCF, transcription-rep 99.8 1E-18 3.6E-23 149.4 9.0 99 16-131 811-920 (1151)
52 2xgj_A ATP-dependent RNA helic 99.7 1.7E-18 5.7E-23 146.6 6.9 83 36-132 409-498 (1010)
53 1gm5_A RECG; helicase, replica 99.7 2E-19 6.8E-24 148.9 -0.4 99 16-131 577-695 (780)
54 3jux_A Protein translocase sub 99.7 5.1E-18 1.7E-22 138.7 7.1 96 16-131 473-585 (822)
55 2fwr_A DNA repair protein RAD2 99.7 1.3E-19 4.4E-24 141.5 -3.0 99 15-131 347-452 (472)
56 2fsf_A Preprotein translocase 99.7 8.8E-18 3E-22 138.8 7.0 96 16-131 440-581 (853)
57 3dmq_A RNA polymerase-associat 99.7 4.4E-18 1.5E-22 143.6 4.6 98 15-130 501-612 (968)
58 4a4z_A Antiviral helicase SKI2 99.7 9.1E-18 3.1E-22 142.0 5.4 86 35-130 401-489 (997)
59 1z5z_A Helicase of the SNF2/RA 99.7 1.2E-17 4E-22 123.3 3.5 99 16-132 111-223 (271)
60 1nkt_A Preprotein translocase 99.7 4.9E-17 1.7E-21 134.9 7.1 96 16-131 459-615 (922)
61 1gku_B Reverse gyrase, TOP-RG; 99.7 2.7E-17 9.2E-22 139.8 4.7 66 17-87 275-352 (1054)
62 2oca_A DAR protein, ATP-depend 99.7 2.6E-17 8.8E-22 129.6 2.9 96 16-130 347-452 (510)
63 4ddu_A Reverse gyrase; topoiso 99.6 5.4E-17 1.9E-21 138.4 2.4 66 17-88 309-388 (1104)
64 3h1t_A Type I site-specific re 99.6 2.8E-16 9.5E-21 126.0 4.9 89 16-123 438-545 (590)
65 4f92_B U5 small nuclear ribonu 99.6 2E-15 6.9E-20 133.1 8.4 88 36-131 381-471 (1724)
66 1z63_A Helicase of the SNF2/RA 99.6 7.3E-16 2.5E-20 121.0 3.0 98 16-131 340-451 (500)
67 1z3i_X Similar to RAD54-like; 99.5 9E-15 3.1E-19 118.8 7.3 99 16-132 415-527 (644)
68 4f92_B U5 small nuclear ribonu 99.5 6.9E-15 2.4E-19 129.7 4.5 89 35-131 1215-1306(1724)
69 3mwy_W Chromo domain-containin 99.5 6.4E-14 2.2E-18 116.2 6.6 99 16-132 571-683 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 8.1E-11 2.8E-15 100.1 4.5 58 47-123 637-694 (1038)
71 2vl7_A XPD; helicase, unknown 97.9 2.9E-06 1E-10 67.6 1.3 108 15-127 382-516 (540)
72 2ipc_A Preprotein translocase 95.5 0.05 1.7E-06 46.2 7.9 43 32-76 542-584 (997)
73 4a15_A XPD helicase, ATP-depen 94.8 0.022 7.5E-07 46.1 3.8 108 16-127 447-579 (620)
74 3hgt_A HDA1 complex subunit 3; 94.2 0.18 6.2E-06 37.8 7.4 95 16-132 124-236 (328)
75 3crv_A XPD/RAD3 related DNA he 93.6 0.23 8E-06 39.3 7.3 102 16-122 392-519 (551)
76 1gm5_A RECG; helicase, replica 93.0 0.055 1.9E-06 45.0 3.0 66 17-82 417-495 (780)
77 2eyq_A TRCF, transcription-rep 85.8 0.48 1.7E-05 41.0 3.1 67 16-82 651-730 (1151)
78 3oiy_A Reverse gyrase helicase 85.8 0.25 8.7E-06 37.1 1.2 67 16-82 63-144 (414)
79 3fe2_A Probable ATP-dependent 78.2 2.2 7.4E-05 29.6 3.7 63 16-82 101-181 (242)
80 4ddu_A Reverse gyrase; topoiso 77.0 0.75 2.6E-05 39.7 1.1 66 16-82 120-201 (1104)
81 2v1x_A ATP-dependent DNA helic 73.3 0.93 3.2E-05 36.3 0.7 52 16-67 83-144 (591)
82 1t6n_A Probable ATP-dependent 72.9 4.6 0.00016 27.2 4.2 63 17-82 82-163 (220)
83 3iuy_A Probable ATP-dependent 68.1 3.6 0.00012 28.0 2.7 63 16-82 93-172 (228)
84 2oxc_A Probable ATP-dependent 67.2 5 0.00017 27.4 3.4 62 16-82 91-171 (230)
85 1oyw_A RECQ helicase, ATP-depe 66.7 1.6 5.6E-05 34.2 0.8 51 17-67 65-123 (523)
86 1vec_A ATP-dependent RNA helic 66.1 7.7 0.00026 25.7 4.1 63 16-82 70-151 (206)
87 2gxq_A Heat resistant RNA depe 65.7 4.3 0.00015 27.0 2.7 63 16-82 71-149 (207)
88 3bor_A Human initiation factor 61.3 6.2 0.00021 27.1 2.9 64 16-82 97-178 (237)
89 1wrb_A DJVLGB; RNA helicase, D 60.5 8.8 0.0003 26.5 3.6 62 17-82 100-179 (253)
90 1qde_A EIF4A, translation init 59.7 6.4 0.00022 26.5 2.7 62 16-82 81-160 (224)
91 3ly5_A ATP-dependent RNA helic 58.1 11 0.00037 26.5 3.8 63 16-82 125-206 (262)
92 2db3_A ATP-dependent RNA helic 57.3 8.1 0.00028 29.2 3.2 62 17-82 129-208 (434)
93 3ber_A Probable ATP-dependent 56.1 12 0.00042 25.9 3.8 62 17-82 111-191 (249)
94 1gku_B Reverse gyrase, TOP-RG; 53.0 4.8 0.00017 34.5 1.4 49 17-67 99-163 (1054)
95 1fuu_A Yeast initiation factor 52.9 18 0.00061 26.3 4.4 62 16-82 88-167 (394)
96 2pl3_A Probable ATP-dependent 49.8 8.3 0.00028 26.3 2.0 62 16-82 96-176 (236)
97 1xti_A Probable ATP-dependent 43.5 15 0.0005 26.7 2.6 64 16-82 75-157 (391)
98 1tf5_A Preprotein translocase 37.7 17 0.00057 30.7 2.3 46 16-67 123-180 (844)
99 2fsf_A Preprotein translocase 35.7 14 0.00048 31.2 1.5 46 16-67 114-171 (853)
100 1qle_D Cytochrome AA3, ccytoch 33.4 12 0.00041 19.3 0.5 17 39-55 4-20 (43)
101 3dkp_A Probable ATP-dependent 32.7 7.9 0.00027 26.5 -0.4 64 16-82 97-180 (245)
102 2fcj_A Small toprim domain pro 29.3 1.1E+02 0.0037 19.2 4.6 38 33-72 26-63 (119)
103 1nkt_A Preprotein translocase 28.3 30 0.001 29.5 2.3 46 16-67 151-208 (922)
104 2ipc_A Preprotein translocase 25.0 39 0.0013 29.1 2.4 46 16-67 119-176 (997)
105 3fmo_B ATP-dependent RNA helic 24.8 20 0.00067 25.8 0.6 59 17-82 162-240 (300)
106 3tdq_A PILY2 protein; fimbiria 22.8 1.1E+02 0.0039 18.2 3.5 41 15-55 47-87 (98)
107 2p1g_A Putative xylanase; stru 22.2 93 0.0032 22.2 3.7 69 52-125 169-244 (249)
108 1jr5_A 10 kDa anti-sigma facto 20.9 66 0.0023 19.2 2.2 21 39-59 57-77 (90)
No 1
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=9.3e-28 Score=171.44 Aligned_cols=104 Identities=23% Similarity=0.447 Sum_probs=93.8
Q ss_pred ccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 11 PHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
+.....++++||||++++.++ .++.+.++||+|++++|.+++++|+.|+.+|||||+++++|+|+|++++||
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi 104 (212)
T 3eaq_A 25 LLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVV 104 (212)
T ss_dssp HHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEE
T ss_pred HHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEE
Confidence 334456889999999998873 688999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
++|+|. |.++|+||+||+||. ++|.|+.|+++
T Consensus 105 ~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~l~~~ 137 (212)
T 3eaq_A 105 HYRLPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGP 137 (212)
T ss_dssp ESSCCS------------------SHHHHHHHHTTBCCCC--BEEEEEECG
T ss_pred ECCCCc------------------CHHHHHHHhcccCCCCCCCeEEEEEch
Confidence 999998 479999999999999 69999999873
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=6.6e-28 Score=199.36 Aligned_cols=119 Identities=34% Similarity=0.418 Sum_probs=112.1
Q ss_pred cCCCCeEEEEeecCCCCC-------------------CCceEEEecCCCCHHHHHHHhhcCC-----CCceEEEEecccc
Q psy16353 14 TFSPNISLLLCSSLNKPE-------------------VQWKIVVLHSSIPKEQQDLVFTRFP-----PGVRKIVLSTNIA 69 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~-------------------~~~~~~~lh~~l~~~~r~~~~~~f~-----~g~~~vlvaT~~~ 69 (132)
...++++||||++++.++ .++.+.++||+|++++|.++++.|+ +|+++|||||+++
T Consensus 300 ~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia 379 (773)
T 2xau_A 300 TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA 379 (773)
T ss_dssp HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH
T ss_pred hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH
Confidence 346889999999988762 4788999999999999999999999 9999999999999
Q ss_pred ccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 70 ESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 70 ~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+|+|+|+|++|||+|+++...|||..++..+...|+|.++|+||+||+||.++|.||+||++
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~ 442 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 442 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecH
Confidence 999999999999999999999999999999999999999999999999999999999999873
No 3
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.1e-26 Score=159.55 Aligned_cols=109 Identities=24% Similarity=0.437 Sum_probs=92.0
Q ss_pred ccccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 11 PHATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
+.....++++||||++++.+ ..++.+..+||+|++++|.++++.|++|+.++||||+++++|+|+|++++||
T Consensus 28 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi 107 (175)
T 2rb4_A 28 IYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVV 107 (175)
T ss_dssp HHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEE
T ss_pred HHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEE
Confidence 33445678999999999887 3788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
++|+|... . ...+..+|+||+||+||. ++|.++.|++
T Consensus 108 ~~d~p~~~----~--------~~~~~~~~~qr~GR~gR~g~~g~~~~~~~ 145 (175)
T 2rb4_A 108 NFDLPVKQ----G--------EEPDYETYLHRIGRTGRFGKKGLAFNMIE 145 (175)
T ss_dssp ESSCCC------C--------CSCCHHHHHHHHCBC----CCEEEEEEEC
T ss_pred EeCCCCCc----c--------ccCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999421 0 112579999999999999 7899999886
No 4
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=1.7e-26 Score=158.53 Aligned_cols=101 Identities=22% Similarity=0.451 Sum_probs=93.6
Q ss_pred ccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 13 ATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 13 ~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
....++++||||++++.++ .++.+..+||+|++++|.+++++|+.|+.++||||+++++|+|+|++++||++
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~ 110 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINY 110 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEES
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEe
Confidence 3456789999999998873 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|+|. +..+|+||+||+||. ++|.++.|++
T Consensus 111 ~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~ 140 (163)
T 2hjv_A 111 DLPL------------------EKESYVHRTGRTGRAGNKGKAISFVT 140 (163)
T ss_dssp SCCS------------------SHHHHHHHTTTSSCTTCCEEEEEEEC
T ss_pred CCCC------------------CHHHHHHhccccCcCCCCceEEEEec
Confidence 9997 479999999999999 7999999886
No 5
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1e-26 Score=174.13 Aligned_cols=103 Identities=21% Similarity=0.442 Sum_probs=91.3
Q ss_pred cccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEe
Q psy16353 12 HATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD 83 (132)
Q Consensus 12 ~~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~ 83 (132)
.....++++||||++++.+ ..++.+.++||+|++++|.+++++|+.|+.+||||||++++|+|+|++++||+
T Consensus 23 l~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 23 LYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp HHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred HHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE
Confidence 3344688999999999887 37899999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+|+|. +..+|+||+||+||. ++|.|+.|+++
T Consensus 103 ~d~p~------------------s~~~y~Qr~GRagR~g~~G~~i~l~~~ 134 (300)
T 3i32_A 103 YRMPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGP 134 (300)
T ss_dssp SSCCS------------------STTHHHHHHTCCC-----CEEEEEECS
T ss_pred cCCCC------------------CHHHHHHHccCcCcCCCCceEEEEeCh
Confidence 99998 468999999999999 79999999974
No 6
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=2.6e-26 Score=159.09 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=94.6
Q ss_pred ccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 11 PHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
+.+....+++||||++++.++ .++.+..+||+|++++|.+++++|++|+.++||||+++++|+|+|++++||
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi 104 (172)
T 1t5i_A 25 LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 104 (172)
T ss_dssp HHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE
T ss_pred HHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEE
Confidence 344456789999999998873 688999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
++|+|. +..+|+||+||+||. ++|.++.|++
T Consensus 105 ~~d~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~ 136 (172)
T 1t5i_A 105 NYDMPE------------------DSDTYLHRVARAGRFGTKGLAITFVS 136 (172)
T ss_dssp ESSCCS------------------SHHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred EECCCC------------------CHHHHHHHhcccccCCCCcEEEEEEc
Confidence 999998 479999999999999 7899999986
No 7
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=3.2e-26 Score=157.32 Aligned_cols=104 Identities=24% Similarity=0.479 Sum_probs=91.3
Q ss_pred ccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEE
Q psy16353 11 PHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVV 82 (132)
Q Consensus 11 ~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI 82 (132)
+.+...++++||||++++.++ .++.+..+||+|++++|.++++.|+.|+.++||||+++++|+|+|++++||
T Consensus 24 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi 103 (165)
T 1fuk_A 24 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 103 (165)
T ss_dssp HHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred HHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEE
Confidence 334456789999999998873 688999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
++|+|. +..+|+||+||+||. ++|.|+.|+++
T Consensus 104 ~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~ 136 (165)
T 1fuk_A 104 NYDLPA------------------NKENYIHRIGRGGRFGRKGVAINFVTN 136 (165)
T ss_dssp ESSCCS------------------SGGGGGGSSCSCC-----CEEEEEEET
T ss_pred EeCCCC------------------CHHHHHHHhcccccCCCCceEEEEEcc
Confidence 999998 468999999999999 78999999874
No 8
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.5e-25 Score=157.88 Aligned_cols=98 Identities=16% Similarity=0.372 Sum_probs=89.9
Q ss_pred CCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCc
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTK 88 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~ 88 (132)
++++||||++++.++ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~ 133 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 133 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCC
Confidence 568999999999883 688999999999999999999999999999999999999999999999999999997
Q ss_pred eeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 89 VLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+..+|+||+||+||. ++|.++.|+++
T Consensus 134 ------------------~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 134 ------------------EIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp ------------------SHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred ------------------CHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 479999999999999 78999999873
No 9
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=2.4e-25 Score=156.02 Aligned_cols=99 Identities=19% Similarity=0.385 Sum_probs=78.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||++++.++ .++.+..+||+|++.+|.+++++|+.|+.++||||+++++|+|+|++++||++|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p 124 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP 124 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCC
Confidence 5679999999998883 68999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
. +..+|+||+||+||. ++|.|+.|+++
T Consensus 125 ~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 152 (185)
T 2jgn_A 125 S------------------DIEEYVHRIGRTGRVGNLGLATSFFNE 152 (185)
T ss_dssp S------------------SHHHHHHHHTTBCCTTSCEEEEEEECG
T ss_pred C------------------CHHHHHHHccccCCCCCCcEEEEEEch
Confidence 8 479999999999999 78999999863
No 10
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=4.3e-26 Score=157.42 Aligned_cols=104 Identities=18% Similarity=0.324 Sum_probs=93.9
Q ss_pred cccccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEE
Q psy16353 10 SPHATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYV 81 (132)
Q Consensus 10 ~~~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~V 81 (132)
.+.+....+++||||++++.++ .++.+..+||+|++++|.+++++|++|+.++||||+++++|+|+|++++|
T Consensus 23 ~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~V 102 (170)
T 2yjt_D 23 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHV 102 (170)
Confidence 3444456789999999999883 57889999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 82 VDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 82 I~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|++|+|. |..+|+||+||+||. ++|.++.+++
T Consensus 103 i~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~ 135 (170)
T 2yjt_D 103 FNFDMPR------------------SGDTYLHRIGRTARAGRKGTAISLVE 135 (170)
Confidence 9999997 468999999999999 7899998875
No 11
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=2.1e-24 Score=167.86 Aligned_cols=96 Identities=18% Similarity=0.408 Sum_probs=90.7
Q ss_pred CeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCce
Q psy16353 18 NISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKV 89 (132)
Q Consensus 18 ~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~ 89 (132)
.++||||+|++.++ .++.+..+||++++++|.+++++|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~- 379 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS- 379 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS-
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC-
Confidence 34999999999883 789999999999999999999999999999999999999999999999999999998
Q ss_pred eeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 90 LTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 90 ~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+..+|+||+||+||. ++|.++.|++
T Consensus 380 -----------------~~~~y~qriGR~gR~g~~G~a~~~~~ 405 (434)
T 2db3_A 380 -----------------KIDDYVHRIGRTGRVGNNGRATSFFD 405 (434)
T ss_dssp -----------------SHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred -----------------CHHHHHHHhcccccCCCCCEEEEEEe
Confidence 479999999999999 8999999987
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.88 E-value=1.5e-23 Score=159.95 Aligned_cols=105 Identities=24% Similarity=0.395 Sum_probs=93.9
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||++++.++ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 264 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 264 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECC
Confidence 35679999999998883 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|....+ +.|..+|+||+||+||. ++|.|+.+++
T Consensus 344 p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 344 PVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp CBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CCCCCC------------CcchheeecccCcccCCCCCceEEEEEc
Confidence 964321 12578999999999998 7899999986
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=160.61 Aligned_cols=99 Identities=19% Similarity=0.385 Sum_probs=91.7
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||++++.++ .++.+..+||++++++|.+++++|+.|+.+|||||+++++|+|+|++++||++|+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p 354 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP 354 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCC
Confidence 5678999999998883 68899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
. |..+|+||+||+||. ++|.|+.|+++
T Consensus 355 ~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 382 (417)
T 2i4i_A 355 S------------------DIEEYVHRIGRTGRVGNLGLATSFFNE 382 (417)
T ss_dssp S------------------SHHHHHHHHTTBCC--CCEEEEEEECG
T ss_pred C------------------CHHHHHHhcCccccCCCCceEEEEEcc
Confidence 7 579999999999999 78999999863
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=3.6e-23 Score=166.86 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=92.9
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||+|++.++ .++.+..+||+|++++|.+++++|+.|+.+|||||+++++|+|+|+|++||++++|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p 345 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMS 345 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCC
Confidence 5689999999999883 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
. |.++|+||+||+||. .+|.|+.||+
T Consensus 346 ~------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~ 372 (591)
T 2v1x_A 346 K------------------SMENYYQESGRAGRDDMKADCILYYG 372 (591)
T ss_dssp S------------------SHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred C------------------CHHHHHHHhccCCcCCCCceEEEEEC
Confidence 8 579999999999999 7999999986
No 15
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.88 E-value=9.2e-24 Score=161.38 Aligned_cols=102 Identities=21% Similarity=0.457 Sum_probs=80.4
Q ss_pred ccCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEec
Q psy16353 13 ATFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 13 ~~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
.....+++||||++++.+ +.++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 276 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 276 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 355 (414)
T ss_dssp HSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEES
T ss_pred HhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEe
Confidence 334567999999999887 368899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+.|. |..+|+||+||+||. ++|.|+.|+++
T Consensus 356 ~~p~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 386 (414)
T 3eiq_A 356 DLPT------------------NRENYIHRIGRGGRFGRKGVAINMVTE 386 (414)
T ss_dssp SCCS------------------STHHHHHHSCCC-------CEEEEECS
T ss_pred CCCC------------------CHHHhhhhcCcccCCCCCceEEEEEcH
Confidence 9997 469999999999999 78999999874
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.88 E-value=3.4e-23 Score=164.83 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=92.7
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||+|++.++ .++.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|+|++||++|.
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~ 313 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC
Confidence 45679999999999884 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|. |.++|.||+||+||. .+|.|+.+|+
T Consensus 314 p~------------------s~~~y~Qr~GRaGR~g~~~~~~l~~~ 341 (523)
T 1oyw_A 314 PR------------------NIESYYQETGRAGRDGLPAEAMLFYD 341 (523)
T ss_dssp CS------------------SHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred CC------------------CHHHHHHHhccccCCCCCceEEEEeC
Confidence 98 579999999999999 7999999885
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.88 E-value=1.6e-23 Score=160.41 Aligned_cols=100 Identities=19% Similarity=0.519 Sum_probs=92.8
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||++++.++ .++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 35679999999998873 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. +..+|+||+||+||. ++|.|+.++++
T Consensus 354 p~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 382 (410)
T 2j0s_A 354 PN------------------NRELYIHRIGRSGRYGRKGVAINFVKN 382 (410)
T ss_dssp CS------------------SHHHHHHHHTTSSGGGCCEEEEEEEEG
T ss_pred CC------------------CHHHHHHhcccccCCCCceEEEEEecH
Confidence 97 479999999999999 89999999863
No 18
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.88 E-value=6.4e-23 Score=163.27 Aligned_cols=100 Identities=17% Similarity=0.337 Sum_probs=92.6
Q ss_pred CCCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEe
Q psy16353 15 FSPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD 83 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~ 83 (132)
....++||||+|++.++ .++.+..+||+|++++|.++++.|+.|+.+|||||+++++|+|+|+|++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 45679999999998873 3899999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+|+|. |..+|+||+||+||. ++|.|+.++++
T Consensus 417 ~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~ 448 (563)
T 3i5x_A 417 IGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICK 448 (563)
T ss_dssp ESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEG
T ss_pred ECCCC------------------chhhhhhhcCccccCCCCceEEEEEch
Confidence 99998 468999999999999 78999999863
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.87 E-value=5.8e-23 Score=156.67 Aligned_cols=100 Identities=21% Similarity=0.457 Sum_probs=92.8
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||++++.++ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 45679999999998873 5789999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. |..+|+||+||+||. ++|.|+.|+++
T Consensus 336 p~------------------s~~~~~Qr~GR~gR~g~~g~~~~l~~~ 364 (400)
T 1s2m_A 336 PK------------------TAETYLHRIGRSGRFGHLGLAINLINW 364 (400)
T ss_dssp CS------------------SHHHHHHHHCBSSCTTCCEEEEEEECG
T ss_pred CC------------------CHHHHHHhcchhcCCCCCceEEEEecc
Confidence 97 478999999999999 89999999874
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.87 E-value=1.1e-22 Score=162.97 Aligned_cols=100 Identities=17% Similarity=0.337 Sum_probs=92.6
Q ss_pred CCCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEe
Q psy16353 15 FSPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD 83 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~ 83 (132)
....++||||+|++.++ .++.+..+||+|++++|.+++++|+.|+.+|||||+++++|+|+|++++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 35679999999998873 3899999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
+|+|. +..+|+||+||+||. ++|.|+.++++
T Consensus 366 ~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~ 397 (579)
T 3sqw_A 366 IGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICK 397 (579)
T ss_dssp ESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEG
T ss_pred cCCCC------------------CHHHhhhhccccccCCCCceEEEEEcc
Confidence 99998 468999999999999 78999999863
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.87 E-value=8.8e-23 Score=154.56 Aligned_cols=105 Identities=22% Similarity=0.429 Sum_probs=94.0
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||++++.++ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 241 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 45689999999998873 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|.. ...+.|..+|+||+||+||. ++|.|+.+++
T Consensus 321 p~~------------~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 321 PTL------------ANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp CBC------------TTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CCC------------CcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 962 12234679999999999999 7899999886
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.87 E-value=1.1e-22 Score=154.40 Aligned_cols=100 Identities=17% Similarity=0.369 Sum_probs=93.1
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||++++.++ .++.+..+||++++++|.++++.|++|+.++||||+++++|+|+|++++||+++.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 46789999999998883 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. |..+|+||+||+||. ++|.|+.++++
T Consensus 328 p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 328 PE------------------DSDTYLHRVARAGRFGTKGLAITFVSD 356 (391)
T ss_dssp CS------------------SHHHHHHHHCBCSSSCCCCEEEEEECS
T ss_pred CC------------------CHHHHHHhcccccCCCCceEEEEEEcc
Confidence 97 479999999999999 79999999863
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.86 E-value=1.5e-23 Score=164.27 Aligned_cols=108 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred cccCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEe
Q psy16353 12 HATFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD 83 (132)
Q Consensus 12 ~~~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~ 83 (132)
......+++||||++++.++ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 33345679999999999884 5788999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+|+|..... +.|..+|+||+||+||. .+|.|+.|++
T Consensus 408 ~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 408 FDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp -------------------------------------------------
T ss_pred ecCCCCCcc------------CCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 999964311 11468999999999999 7899999886
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=2.8e-22 Score=150.48 Aligned_cols=100 Identities=22% Similarity=0.470 Sum_probs=92.7
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
....++||||++++.++ .++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 35678999999998883 6889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
|. |..+|+||+||+||. ++|.++.++++
T Consensus 316 ~~------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 344 (367)
T 1hv8_A 316 PQ------------------NPESYMHRIGRTGRAGKKGKAISIINR 344 (367)
T ss_dssp CS------------------CHHHHHHHSTTTCCSSSCCEEEEEECT
T ss_pred CC------------------CHHHhhhcccccccCCCccEEEEEEcH
Confidence 97 579999999999999 79999999874
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.85 E-value=2.6e-22 Score=158.37 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=46.4
Q ss_pred CCCCeEEEEeecCCCCC--------------------CCceEEEecCCCCHHHHHHHhhcCCC-CceEEEEecccccccc
Q psy16353 15 FSPNISLLLCSSLNKPE--------------------VQWKIVVLHSSIPKEQQDLVFTRFPP-GVRKIVLSTNIAESSI 73 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------------------~~~~~~~lh~~l~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gl 73 (132)
....++||||+++..++ .|.....+||+|++++|.+++++|++ |+.+|||||+++++|+
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 45789999999988762 14555667888999999999999999 9999999999999999
Q ss_pred ccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 74 TVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 74 di~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+|++++||+||+|. |+.+|+||+|| ||.++|.|+.|+++
T Consensus 468 Dip~v~~VI~~d~p~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~ 507 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSG------------------NVTKMIQVRGR-GRAAGSKCILVTSK 507 (556)
T ss_dssp -----CEEEEETCCS------------------CHHHHHHC---------CCEEEEESC
T ss_pred CchhCCEEEEeCCCC------------------CHHHHHHhcCC-CCCCCceEEEEEeC
Confidence 999999999999998 47999999999 99999999999874
No 26
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=1.7e-21 Score=152.41 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=94.4
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||+|++.+ +.++.+..+||++. .+++++|++|+.+|||||+++++|+|+|+ ++|||+|+.
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 367899999999887 36889999999754 56899999999999999999999999999 999999998
Q ss_pred ceeeecCCCCcccccc---cccCHhhHHHhhcccCCCC--CceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQL---EWASESSCQQRAGRVGRVS--EGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~---~~~s~~~~~qR~GR~gR~~--~g~~~~l~s 131 (132)
....|+ ..+...+.. .|.|.++|+||+||+||.+ +|.|+.++.
T Consensus 262 ~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 262 LKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 888887 334444444 8889999999999999994 889987763
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.84 E-value=9e-23 Score=154.83 Aligned_cols=101 Identities=25% Similarity=0.509 Sum_probs=0.0
Q ss_pred cCCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 14 TFSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
....+++||||++++.++ .++.+..+||++++++|.++++.|++|+.++||||+++++|+|+|++++||+++
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 345679999999999884 577899999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEeC
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s~ 132 (132)
.|. |..+|+||+||+||. ++|.|+.++++
T Consensus 336 ~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 365 (394)
T 1fuu_A 336 LPA------------------NKENYIHRIGRGGRFGRKGVAINFVTN 365 (394)
T ss_dssp ------------------------------------------------
T ss_pred CCC------------------CHHHHHHHcCcccCCCCCceEEEEEch
Confidence 997 468999999999999 78999998863
No 28
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.84 E-value=1.3e-21 Score=159.79 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=88.8
Q ss_pred CeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCC--CceEEEEeccccccccccCCccEEEecCCC
Q psy16353 18 NISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPP--GVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 18 ~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...+|||+|+++++ .++.+.++||+|++++|.++++.|+. |+.+|||||+++++|+|+ ++++||++|++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34588999987773 68899999999999999999999998 889999999999999999 99999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCC----CceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS----EGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~----~g~~~~l~s 131 (132)
+. .||+..+. ...|+|.++|+||+||+||.+ +|.|+.+++
T Consensus 400 k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred cc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 86 67777443 366899999999999999994 489998865
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.84 E-value=1.9e-21 Score=144.63 Aligned_cols=100 Identities=17% Similarity=0.328 Sum_probs=90.1
Q ss_pred cCCCCeEEEEeecCCCCC---CC-ceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCce
Q psy16353 14 TFSPNISLLLCSSLNKPE---VQ-WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKV 89 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~~---~~-~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~ 89 (132)
....+++||||++++.++ .. -.+..+||++++++|.+++++|++|+.++||||+++++|+|+|++++||+++.|.
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~- 295 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ- 295 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS-
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC-
Confidence 356789999999998873 11 1588999999999999999999999999999999999999999999999999997
Q ss_pred eeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 90 LTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 90 ~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|..+|+||+||+||. ++|.|+.+++
T Consensus 296 -----------------s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 296 -----------------DLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp -----------------SHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred -----------------CHHHhhHhcCccccCCCCceEEEEEe
Confidence 479999999999999 8899998874
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.84 E-value=2.5e-22 Score=163.17 Aligned_cols=98 Identities=17% Similarity=0.332 Sum_probs=57.4
Q ss_pred CCCeEEEEeecCCCCC--------CC----ceEEEe--------cCCCCHHHHHHHhhcCCC-CceEEEEeccccccccc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQ----WKIVVL--------HSSIPKEQQDLVFTRFPP-GVRKIVLSTNIAESSIT 74 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~----~~~~~l--------h~~l~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gld 74 (132)
..+++||||++++.++ .+ +.+..+ ||+|++++|.+++++|+. |+.+|||||+++++|+|
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 476 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC--
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCc
Confidence 5679999999999883 33 788888 559999999999999998 99999999999999999
Q ss_pred cCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 75 VPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 75 i~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
+|++++||+||+|.. ..+|+||+|| ||.++|.|+.|+++
T Consensus 477 ip~v~~VI~~d~p~s------------------~~~~~Qr~GR-GR~~~g~~~~l~~~ 515 (696)
T 2ykg_A 477 IAQCNLVILYEYVGN------------------VIKMIQTRGR-GRARGSKCFLLTSN 515 (696)
T ss_dssp -CCCSEEEEESCC--------------------CCCC----------CCCEEEEEESC
T ss_pred CccCCEEEEeCCCCC------------------HHHHHHhhcc-CcCCCceEEEEecC
Confidence 999999999999974 5899999999 99999999999874
No 31
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.83 E-value=1.5e-21 Score=153.07 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=89.8
Q ss_pred CCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCc
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTK 88 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~ 88 (132)
.+++||||+|++.++ .++.+..+||+ +|.+++++|++|+.+|||||+++++|+|+|+ ++|||+|...
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 679999999998873 68899999985 6788999999999999999999999999999 9999998776
Q ss_pred eeeecCCCCcccc---cccccCHhhHHHhhcccCCC-C-CceEEEEEeC
Q psy16353 89 VLTVAEGSNYSSL---QLEWASESSCQQRAGRVGRV-S-EGRVYYMVTR 132 (132)
Q Consensus 89 ~~~~~~~~~~~~~---~~~~~s~~~~~qR~GR~gR~-~-~g~~~~l~s~ 132 (132)
.+.++.. +.... -..|.|.++|+||+||+||. . +|.|+.|+++
T Consensus 265 ~~~~~~~-~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 265 KPTILEE-GEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp CEEEECS-SSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccccc-cccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 6665532 22222 33778999999999999999 4 8999999863
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.83 E-value=1.6e-21 Score=152.38 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=85.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||++++.++ .++.+..+|| ++|.+++++|++|+.+|||||+++++|+|+| +++||++|..
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcc
Confidence 3679999999999883 6889999999 3688899999999999999999999999999 9999998887
Q ss_pred ceeeec-CCCCcccccccccCHhhHHHhhcccCCC--CCceEEEEE
Q psy16353 88 KVLTVA-EGSNYSSLQLEWASESSCQQRAGRVGRV--SEGRVYYMV 130 (132)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~~s~~~~~qR~GR~gR~--~~g~~~~l~ 130 (132)
..+.++ ...+....-..|.+.++|+||+||+||. .+|.|+.|+
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 766652 2233444455667899999999999996 589999997
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.83 E-value=2.4e-21 Score=148.98 Aligned_cols=100 Identities=21% Similarity=0.345 Sum_probs=89.8
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecC--------CCCHHHHHHHhhcCCCCceEEEEeccccccccccCCc
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHS--------SIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDV 78 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~--------~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v 78 (132)
....++||||++++.++ .++.+..+|| +|+.++|++++++|++|+.+|||||+++++|+|+|++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC
Confidence 46789999999988773 6899999999 9999999999999999999999999999999999999
Q ss_pred cEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 79 KYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 79 ~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
++||++|.|.. +..|+||+||+||.++|.+|.|+++
T Consensus 439 ~~Vi~~d~~~~------------------~~~~~Qr~GR~~R~g~g~~~~l~~~ 474 (494)
T 1wp9_A 439 DLVVFYEPVPS------------------AIRSIQRRGRTGRHMPGRVIILMAK 474 (494)
T ss_dssp CEEEESSCCHH------------------HHHHHHHHTTSCSCCCSEEEEEEET
T ss_pred CEEEEeCCCCC------------------HHHHHHHHhhccCCCCceEEEEEec
Confidence 99999999984 6899999999999977999999874
No 34
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.83 E-value=4e-21 Score=156.34 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=90.6
Q ss_pred cCCCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 14 TFSPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 14 ~~~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
....+++||||+|++.+ +.++.+..+||+|++++ |..+..+||||||++++|||+| +++||++|
T Consensus 393 ~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 393 AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecC
Confidence 34678999999999988 37899999999999874 4456669999999999999997 99999998
Q ss_pred CCceee----ecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 86 LTKVLT----VAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 86 ~p~~~~----~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
+....+ |||..++.. ...|.|.++|+||+||+||.++|. |.|+++
T Consensus 465 l~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~ 513 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTP 513 (666)
T ss_dssp EEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCC
T ss_pred ccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEec
Confidence 877655 445455533 356889999999999999988899 988864
No 35
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.82 E-value=3.1e-21 Score=156.31 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||+|++.++ .++.+..+||+ +|.+++++|++|+.+||||||++++|+|+| +++|||++++
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 4679999999999883 68899999985 678899999999999999999999999997 9999999987
Q ss_pred ceeee--cCCCCcccccccccCHhhHHHhhcccCCC-C-CceEEEEEe
Q psy16353 88 KVLTV--AEGSNYSSLQLEWASESSCQQRAGRVGRV-S-EGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~-~g~~~~l~s 131 (132)
..+.+ +...++...-..|.|.++|+||+||+||. . +|.|+.|++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 76554 33334556667788999999999999999 3 899999986
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=1.4e-21 Score=153.80 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=66.2
Q ss_pred CCCCeEEEEeecCCCCC--------C------------CceEEEecCCCCHHHHHHHhhcCCC-CceEEEEecccccccc
Q psy16353 15 FSPNISLLLCSSLNKPE--------V------------QWKIVVLHSSIPKEQQDLVFTRFPP-GVRKIVLSTNIAESSI 73 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~------------~~~~~~lh~~l~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gl 73 (132)
....++||||++++.++ . +.....+||+|++++|.+++++|++ |+.+|||||+++++|+
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 35689999999988773 1 3344555669999999999999999 9999999999999999
Q ss_pred ccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 74 TVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 74 di~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+|++++||+||+|.. +.+|+||+|| ||..+|.++.|+++
T Consensus 467 Dlp~v~~VI~~d~p~s------------------~~~~~Qr~GR-gR~~~g~~~~l~~~ 506 (555)
T 3tbk_A 467 DIAECNLVILYEYVGN------------------VIKMIQTRGR-GRARDSKCFLLTSS 506 (555)
T ss_dssp ETTSCSEEEEESCCSS------------------CCCEECSSCC-CTTTSCEEEEEESC
T ss_pred ccccCCEEEEeCCCCC------------------HHHHHHhcCc-CcCCCceEEEEEcC
Confidence 9999999999999984 6899999999 99999999999874
No 37
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.82 E-value=8.2e-21 Score=154.89 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=91.5
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...++||||+|++.++ .++.+..+||+|++.+|.+++++|+.|+.+|||||+++++|+|+|++++||++|.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999998883 78899999999999999999999999999999999999999999999999999974
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEe
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVT 131 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s 131 (132)
... -+.|..+|+||+||+||.++|.++.+++
T Consensus 518 ~~G-------------~p~s~~~~iQr~GRagR~~~G~~i~~~~ 548 (664)
T 1c4o_A 518 KEG-------------FLRSERSLIQTIGRAARNARGEVWLYAD 548 (664)
T ss_dssp SCS-------------GGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred ccC-------------CCCCHHHHHHHHCccCcCCCCEEEEEEc
Confidence 321 0125789999999999999999999875
No 38
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.82 E-value=6e-21 Score=155.60 Aligned_cols=104 Identities=23% Similarity=0.269 Sum_probs=91.6
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
...++||||+|++.++ .++.+..+||++++.+|.+++++|+.|+.+|||||+++++|+|+|++++||+++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4679999999998873 78899999999999999999999999999999999999999999999999999973
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
... -+.|..+|+||+||+||..+|.|+.++++
T Consensus 524 ~~G-------------~p~s~~~~iQr~GRagR~~~G~~i~~~~~ 555 (661)
T 2d7d_A 524 KEG-------------FLRSERSLIQTIGRAARNAEGRVIMYADK 555 (661)
T ss_dssp CCT-------------TTTSHHHHHHHHHTTTTSTTCEEEEECSS
T ss_pred ccc-------------CCCCHHHHHHHhCcccCCCCCEEEEEEeC
Confidence 211 01257899999999999999999998753
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.82 E-value=6.2e-21 Score=156.01 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=72.0
Q ss_pred eEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHh
Q psy16353 35 KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQR 114 (132)
Q Consensus 35 ~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR 114 (132)
.+.++||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+. ...|++..+.. ..|.|.++|.||
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr 386 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQM 386 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHH
Confidence 48899999999999999999999999999999999999999999999984 12233322111 456689999999
Q ss_pred hcccCCCC---CceEEEEEeC
Q psy16353 115 AGRVGRVS---EGRVYYMVTR 132 (132)
Q Consensus 115 ~GR~gR~~---~g~~~~l~s~ 132 (132)
+|||||.+ +|.||.++++
T Consensus 387 ~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 387 SGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HTTBCCTTTCSCEEEEEECSC
T ss_pred hhhcCCCCCCCCceEEEEeCC
Confidence 99999986 8999999863
No 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.82 E-value=1.5e-21 Score=154.65 Aligned_cols=105 Identities=22% Similarity=0.392 Sum_probs=74.2
Q ss_pred CCCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCC
Q psy16353 15 FSPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~ 86 (132)
...+++||||++++.++ .++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||++|.
T Consensus 355 ~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~ 434 (508)
T 3fho_A 355 LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM 434 (508)
T ss_dssp --CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC---
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECC
Confidence 45689999999999984 6789999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
|.... .+.|..+|+||+||+||. ++|.|+.|++
T Consensus 435 p~~~~------------~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 435 PLDQA------------GRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp -CC-----------------CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred CCccc------------CCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 94310 011568999999999999 7899999986
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=1.5e-20 Score=153.54 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=94.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||++++.++ .++.+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +++|||+|.+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 4789999999998873 68899999994 788999999999999999999999999999 9999999866
Q ss_pred ceee--ecCCCCcccccccccCHhhHHHhhcccCCC--CCceEEEEE
Q psy16353 88 KVLT--VAEGSNYSSLQLEWASESSCQQRAGRVGRV--SEGRVYYMV 130 (132)
Q Consensus 88 ~~~~--~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~--~~g~~~~l~ 130 (132)
..+. |+...++..+-..|.|.++|+||+||+||. ++|.||.|+
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 5543 444445555566778999999999999998 689999986
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.81 E-value=7.3e-21 Score=157.47 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCCeEEEEeecCCCCC--------------------CCceEEEecCCCCHHHHHHHhhcCCC-CceEEEEecccccccc
Q psy16353 15 FSPNISLLLCSSLNKPE--------------------VQWKIVVLHSSIPKEQQDLVFTRFPP-GVRKIVLSTNIAESSI 73 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------------------~~~~~~~lh~~l~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gl 73 (132)
....++||||+++..++ .|.....+||+|++++|.+++++|+. |+.+|||||+++++|+
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 45689999999987772 24566677899999999999999999 9999999999999999
Q ss_pred ccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 74 TVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 74 di~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+|++++||+||.|. |+.+|+||+|| ||.++|.|+.|+++
T Consensus 709 Dlp~v~~VI~yd~p~------------------s~~~~iQr~GR-GR~~~g~~i~l~~~ 748 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSG------------------NVTKMIQVRGR-GRAAGSKCILVTSK 748 (797)
T ss_dssp --CCCSEEEEESCCS------------------CHHHHHTC--------CCCEEEEECC
T ss_pred CchhCCEEEEeCCCC------------------CHHHHHHhcCC-CCCCCceEEEEEeC
Confidence 999999999999998 47999999999 99999999999874
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=152.79 Aligned_cols=94 Identities=18% Similarity=0.319 Sum_probs=78.4
Q ss_pred CCeEEEEeecCCCCC--------C------CceEEEecCC--------CCHHHHHHHhhcCCCCceEEEEeccccccccc
Q psy16353 17 PNISLLLCSSLNKPE--------V------QWKIVVLHSS--------IPKEQQDLVFTRFPPGVRKIVLSTNIAESSIT 74 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~------~~~~~~lh~~--------l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gld 74 (132)
.+++||||++++.++ . ++.+..+||+ |++++|.+++++|+.|+.+|||||+++++|+|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999998873 2 7999999999 99999999999999999999999999999999
Q ss_pred cCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEE
Q psy16353 75 VPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130 (132)
Q Consensus 75 i~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~ 130 (132)
+|++++||++|+|. |..+|+||+||+||.+ .++.++
T Consensus 480 ip~v~~VI~~d~p~------------------s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 480 IKECNIVIRYGLVT------------------NEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCSCCCCEEESCCC------------------CHHHHHHHHTTSCSSS--CEEEEE
T ss_pred cccCCEEEEeCCCC------------------CHHHHHHHcCCCCCCC--ceEEEE
Confidence 99999999999998 4799999999986643 444443
No 44
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.80 E-value=1.3e-20 Score=158.45 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCCCeEEEEeecCCCCC--------C------------CceEEEecCCCCHHHHHHHhhcCCC-CceEEEEecccccccc
Q psy16353 15 FSPNISLLLCSSLNKPE--------V------------QWKIVVLHSSIPKEQQDLVFTRFPP-GVRKIVLSTNIAESSI 73 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~--------~------------~~~~~~lh~~l~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gl 73 (132)
....++||||++++.++ . |.....+||+|++++|.+++++|+. |+.+|||||+++++|+
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 45689999999988772 1 5556677899999999999999999 9999999999999999
Q ss_pred ccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCCceEEEEEeC
Q psy16353 74 TVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132 (132)
Q Consensus 74 di~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~~~~l~s~ 132 (132)
|+|++++||+||.|. |+.+|+||+|| ||.++|.++.|+++
T Consensus 709 Dlp~v~~VI~yD~p~------------------s~~~~iQr~GR-GR~~~g~vi~Li~~ 748 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSG------------------NVTKMIQVRGR-GRAAGSKCILVTSK 748 (936)
T ss_dssp -CCCCSEEEEESCCS------------------CSHHHHCC--------CCCEEEEESC
T ss_pred cchhCCEEEEeCCCC------------------CHHHHHHhcCC-CCCCCCEEEEEEeC
Confidence 999999999999998 46899999999 99999999999864
No 45
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-20 Score=159.99 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=75.8
Q ss_pred EEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhh
Q psy16353 36 IVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRA 115 (132)
Q Consensus 36 ~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~ 115 (132)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|.+. ....|+|..+|+||+
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~----------~~~r~iS~~eyiQr~ 576 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDG----------QQFRWVSGGEYIQMS 576 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESS----------SCEEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCc----------cccccCCHHHHHHhh
Confidence 7899999999999999999999999999999999999999999999998876532 134577899999999
Q ss_pred cccCCCC---CceEEEEEeC
Q psy16353 116 GRVGRVS---EGRVYYMVTR 132 (132)
Q Consensus 116 GR~gR~~---~g~~~~l~s~ 132 (132)
||+||.+ .|.||.++++
T Consensus 577 GRAGR~G~d~~G~~ill~~~ 596 (1108)
T 3l9o_A 577 GRAGRRGLDDRGIVIMMIDE 596 (1108)
T ss_dssp HHSCCSSSCSSEEEEEEECC
T ss_pred cccCCCCCCCceEEEEEecC
Confidence 9999995 8999998863
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.79 E-value=2.9e-20 Score=144.80 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCC
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT 87 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p 87 (132)
..+++||||++++.++ .++.+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +.+||+++.+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 3678999999998873 58899999997 577899999999999999999999999999 9999999999
Q ss_pred ceeeecCCCCcccccccccCHhhHHHhhcccCCCC-CceEEEEE
Q psy16353 88 KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS-EGRVYYMV 130 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~-~g~~~~l~ 130 (132)
..+.++ ..++......+.+.++|+||+||+||.+ .+.|+.+|
T Consensus 245 ~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 245 IKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 888887 5566666777889999999999999994 33344343
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.79 E-value=1.9e-20 Score=153.07 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=89.1
Q ss_pred CCCeEEEEeecCCCCC-----------C---------------------------CceEEEecCCCCHHHHHHHhhcCCC
Q psy16353 16 SPNISLLLCSSLNKPE-----------V---------------------------QWKIVVLHSSIPKEQQDLVFTRFPP 57 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~---------------------------~~~~~~lh~~l~~~~r~~~~~~f~~ 57 (132)
..+++||||++++.++ . +..+..+||+|++++|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 5689999999987763 0 1247889999999999999999999
Q ss_pred CceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC---CceEEEEEeC
Q psy16353 58 GVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS---EGRVYYMVTR 132 (132)
Q Consensus 58 g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~---~g~~~~l~s~ 132 (132)
|+.+|||||+++++|+|+|++++||+. ...|+ +. ..|.|.++|.||+||+||.+ +|.||.++++
T Consensus 321 g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 321 GNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred CCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999984 12233 10 45668999999999999985 8999999863
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.79 E-value=3.3e-20 Score=151.97 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=87.8
Q ss_pred CCCeEEEEeecCCCCC----------C----------------C---------------ceEEEecCCCCHHHHHHHhhc
Q psy16353 16 SPNISLLLCSSLNKPE----------V----------------Q---------------WKIVVLHSSIPKEQQDLVFTR 54 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~----------------~---------------~~~~~lh~~l~~~~r~~~~~~ 54 (132)
..+++||||++++.++ . + ..+.++||+|++++|..+++.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4689999999998873 0 1 138999999999999999999
Q ss_pred CCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC---CceEEEEEe
Q psy16353 55 FPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS---EGRVYYMVT 131 (132)
Q Consensus 55 f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~---~g~~~~l~s 131 (132)
|++|+.+|||||+++++|+|+|++++||+.. ..|+ .. ...+.|..+|.||+|||||.+ +|.||.+++
T Consensus 316 f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~-----g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DF-----GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SS-----SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CC-----CCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999821 1111 00 113457899999999999985 799999986
Q ss_pred C
Q psy16353 132 R 132 (132)
Q Consensus 132 ~ 132 (132)
+
T Consensus 386 ~ 386 (720)
T 2zj8_A 386 S 386 (720)
T ss_dssp S
T ss_pred C
Confidence 4
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.78 E-value=1.9e-19 Score=148.80 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=86.4
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC--------Ccc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP--------DVK 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~--------~v~ 79 (132)
...++||||+|++.++ .++++..|||++.+.++..+.++++.| .|+||||+|+||+||+ ++.
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 3567999999999883 899999999999988888777777766 6999999999999999 888
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+||++++|. |...|+||+||+||. .+|.++.|+|
T Consensus 509 ~VIn~d~p~------------------s~r~y~hr~GRTGRqG~~G~s~~~vs 543 (844)
T 1tf5_A 509 AVVGTERHE------------------SRRIDNQLRGRSGRQGDPGITQFYLS 543 (844)
T ss_dssp EEEESSCCS------------------SHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred EEEEecCCC------------------CHHHHHhhcCccccCCCCCeEEEEec
Confidence 999999998 479999999999999 8999999887
No 50
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.77 E-value=8.6e-20 Score=140.31 Aligned_cols=90 Identities=16% Similarity=0.300 Sum_probs=80.1
Q ss_pred CCeEEEEeecCCCCC--------CCceEE-EecCCCCHHHHHHHhhcCCCCceEEEEe----ccccccccccCC-ccEEE
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIV-VLHSSIPKEQQDLVFTRFPPGVRKIVLS----TNIAESSITVPD-VKYVV 82 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~-~lh~~l~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gldi~~-v~~VI 82 (132)
++++||||++++.++ .++.+. .+||+ +|+ +++|++|+.+|||| |+++++|+|+|+ |++||
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 478999999998883 688998 89985 343 99999999999999 999999999999 99999
Q ss_pred ecCCC--ceeeecCCCCcccccccccCHhhHHHhhcccCCCC-----CceEEEEE
Q psy16353 83 DFCLT--KVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS-----EGRVYYMV 130 (132)
Q Consensus 83 ~~~~p--~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~-----~g~~~~l~ 130 (132)
++|+| . |..+|+||+||+||.+ +|.++.|+
T Consensus 326 ~~~~p~~~------------------~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 326 FWGTPSGP------------------DVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp EESCCTTT------------------CHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred EECCCCCC------------------CHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999 5 4799999999999983 78999886
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.76 E-value=1e-18 Score=149.44 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=89.6
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecC
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~ 85 (132)
..++++|||++.+.++ +++.+..+||+|++++|.+++++|.+|+.+|||||+++++|+|+|++++||.++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 5689999999999873 488999999999999999999999999999999999999999999999999887
Q ss_pred CCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 86 LTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
.+.- +.++|.||+||+||. ++|.||.+++
T Consensus 891 ~~~~-----------------~l~~l~Qr~GRvgR~g~~g~~~ll~~ 920 (1151)
T 2eyq_A 891 ADHF-----------------GLAQLHQLRGRVGRSHHQAYAWLLTP 920 (1151)
T ss_dssp TTSS-----------------CHHHHHHHHTTCCBTTBCEEEEEEEC
T ss_pred CCCC-----------------CHHHHHHHHhccCcCCCceEEEEEEC
Confidence 6432 367999999999998 7899999875
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.7e-18 Score=146.65 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=74.0
Q ss_pred EEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEe----cCCCceeeecCCCCcccccccccCHhhH
Q psy16353 36 IVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD----FCLTKVLTVAEGSNYSSLQLEWASESSC 111 (132)
Q Consensus 36 ~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~----~~~p~~~~~~~~~~~~~~~~~~~s~~~~ 111 (132)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||.+. ..|.|..+|
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~--------------~rp~s~~~y 474 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ--------------FRWVSGGEY 474 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSC--------------EEECCHHHH
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcC--------------CccCCHHHH
Confidence 788999999999999999999999999999999999999999999998 66532 234578999
Q ss_pred HHhhcccCCCC---CceEEEEEeC
Q psy16353 112 QQRAGRVGRVS---EGRVYYMVTR 132 (132)
Q Consensus 112 ~qR~GR~gR~~---~g~~~~l~s~ 132 (132)
+||+||+||.+ .|.|+.++++
T Consensus 475 ~Qr~GRAGR~G~d~~G~vi~l~~~ 498 (1010)
T 2xgj_A 475 IQMSGRAGRRGLDDRGIVIMMIDE 498 (1010)
T ss_dssp HHHHTTBCCTTTCSSEEEEEEECS
T ss_pred hHhhhhcccCCCCCceEEEEEECC
Confidence 99999999994 5999999863
No 53
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.73 E-value=2e-19 Score=148.87 Aligned_cols=99 Identities=23% Similarity=0.389 Sum_probs=84.6
Q ss_pred CCCeEEEEeecCCCC----------------C---CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC
Q psy16353 16 SPNISLLLCSSLNKP----------------E---VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~----------------~---~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~ 76 (132)
..++++|||++.+.. + .++.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCT
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCC
Confidence 467899999977542 1 367889999999999999999999999999999999999999999
Q ss_pred CccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 77 DVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 77 ~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
++++||+++.|.. +.+++.||+||+||. .+|.|+.+++
T Consensus 657 ~v~~VIi~d~~r~-----------------~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 657 RANVMVIENPERF-----------------GLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp TCCEEEBCSCSSS-----------------CTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCEEEEeCCCCC-----------------CHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 9999999998863 357899999999998 7999998875
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.72 E-value=5.1e-18 Score=138.72 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=83.9
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC--------Ccc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP--------DVK 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~--------~v~ 79 (132)
...++||||+|++.++ .++++..+||+..+.++..+.++++.| .|+||||+|+||+||+ +..
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 3568999999999883 799999999997776776666777766 5999999999999998 667
Q ss_pred EEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEEEe
Q psy16353 80 YVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 80 ~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l~s 131 (132)
+||++++|. |...|.||+||+||. .+|.++.|++
T Consensus 551 hVInte~Pe------------------s~r~y~qriGRTGRqG~~G~a~~fvs 585 (822)
T 3jux_A 551 CIIGTERHE------------------SRRIDNQLRGRAGRQGDPGESIFFLS 585 (822)
T ss_dssp EEEESSCCS------------------SHHHHHHHHTTSSCSSCCCEEEEEEE
T ss_pred EEEecCCCC------------------CHHHHHHhhCccccCCCCeeEEEEec
Confidence 999999998 579999999999999 8999998886
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.72 E-value=1.3e-19 Score=141.52 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=86.1
Q ss_pred CCCCeEEEEeecCCCCC---CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceee
Q psy16353 15 FSPNISLLLCSSLNKPE---VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLT 91 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~---~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~ 91 (132)
....++||||++.+.++ ..+.+..+||+++.++|++++++|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~--- 423 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG--- 423 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS---
T ss_pred CCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC---
Confidence 45789999999988773 334467899999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCcccccccccCHhhHHHhhcccCCCCCc----eEEEEEe
Q psy16353 92 VAEGSNYSSLQLEWASESSCQQRAGRVGRVSEG----RVYYMVT 131 (132)
Q Consensus 92 ~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g----~~~~l~s 131 (132)
|..+|.||+||+||.++| .+|.|++
T Consensus 424 ---------------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 424 ---------------SAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp ---------------CCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred ---------------CHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 468999999999999666 3555554
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.71 E-value=8.8e-18 Score=138.82 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=86.8
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCC----------
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPD---------- 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~---------- 77 (132)
...++||||+|++.++ .++++..|||++.+.++..+.++|+.| .|+||||+|+||+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~ 517 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAA 517 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhh
Confidence 4567999999999884 899999999999988888888999988 69999999999999987
Q ss_pred ----------------------c-----cEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCceEEEE
Q psy16353 78 ----------------------V-----KYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGRVYYM 129 (132)
Q Consensus 78 ----------------------v-----~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~~~~l 129 (132)
| .+||++++|. |...|.||+||+||. .||.+..+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe------------------s~riy~qr~GRTGRqGd~G~s~~f 579 (853)
T 2fsf_A 518 LENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE------------------SRRIDNQLRGRSGRQGDAGSSRFY 579 (853)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS------------------SHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred cccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC------------------CHHHHHhhccccccCCCCeeEEEE
Confidence 4 5999999998 579999999999999 89999988
Q ss_pred Ee
Q psy16353 130 VT 131 (132)
Q Consensus 130 ~s 131 (132)
+|
T Consensus 580 ls 581 (853)
T 2fsf_A 580 LS 581 (853)
T ss_dssp EE
T ss_pred ec
Confidence 76
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.71 E-value=4.4e-18 Score=143.58 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCCc--eEEEEeccccccccccCCccEEEe
Q psy16353 15 FSPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPGV--RKIVLSTNIAESSITVPDVKYVVD 83 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g~--~~vlvaT~~~~~Gldi~~v~~VI~ 83 (132)
...+++||||++++.++ .++.+..+||+|++++|.+++++|+.|+ .+|||||+++++|+|+|++++||+
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE
Confidence 46789999999988772 4899999999999999999999999998 999999999999999999999999
Q ss_pred cCCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-CCce--EEEEE
Q psy16353 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-SEGR--VYYMV 130 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~~g~--~~~l~ 130 (132)
+|.|. ++..|.||+||+||. +.|. .|.++
T Consensus 581 ~d~p~------------------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 581 FDLPF------------------NPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp SSCCS------------------SHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred ecCCC------------------CHHHHHHHhhccccCCCCceEEEEEec
Confidence 99997 479999999999999 5553 44444
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.70 E-value=9.1e-18 Score=142.02 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=73.0
Q ss_pred eEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHh
Q psy16353 35 KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQR 114 (132)
Q Consensus 35 ~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR 114 (132)
.+..+||+|++.+|..+++.|+.|..+|||||+++++|+|+|+ ..||.++.++ |+.. ...++|..+|+||
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr 470 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQM 470 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHH
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHH
Confidence 4789999999999999999999999999999999999999999 5566666665 2322 2346789999999
Q ss_pred hcccCCCC---CceEEEEE
Q psy16353 115 AGRVGRVS---EGRVYYMV 130 (132)
Q Consensus 115 ~GR~gR~~---~g~~~~l~ 130 (132)
+|||||.+ .|.|+.++
T Consensus 471 ~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 471 AGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HGGGCCTTTCSSEEEEEEC
T ss_pred hcccccCCCCcceEEEEec
Confidence 99999974 78999887
No 59
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.68 E-value=1.2e-17 Score=123.27 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCC-ceE-EEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPG-VRK-IVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g-~~~-vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++||||++...++ .++.+..+||++++++|.+++++|+++ ..+ +|++|+++++|+|++++++||++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 190 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEEC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEE
Confidence 5679999999877652 388899999999999999999999988 556 78999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-C--CceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-S--EGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~--~g~~~~l~s~ 132 (132)
|+|.+ ++.|.||+||++|. + +..+|+|+++
T Consensus 191 d~~wn------------------p~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 191 DRWWN------------------PAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp SCCSC------------------TTTC--------------CCEEEEEEET
T ss_pred CCCCC------------------hhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 99984 58999999999998 3 3456777763
No 60
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.68 E-value=4.9e-17 Score=134.92 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=86.1
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCc---------
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDV--------- 78 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v--------- 78 (132)
...++||||+|++.++ .++++..|||++.+.++..+.++|+.| .|+||||+|+||+||+.+
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHH
Confidence 3457999999999884 799999999999888888888899887 699999999999999975
Q ss_pred -------------------------------------------cEEEecCCCceeeecCCCCcccccccccCHhhHHHhh
Q psy16353 79 -------------------------------------------KYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRA 115 (132)
Q Consensus 79 -------------------------------------------~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~ 115 (132)
.+||++++|. |...|.||+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pe------------------s~riy~qr~ 598 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE------------------SRRIDNQLR 598 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS------------------SHHHHHHHH
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCC------------------CHHHHHHHh
Confidence 5999999998 579999999
Q ss_pred cccCCC-CCceEEEEEe
Q psy16353 116 GRVGRV-SEGRVYYMVT 131 (132)
Q Consensus 116 GR~gR~-~~g~~~~l~s 131 (132)
||+||. .||.+..++|
T Consensus 599 GRTGRqGdpG~s~fflS 615 (922)
T 1nkt_A 599 GRSGRQGDPGESRFYLS 615 (922)
T ss_dssp HTSSGGGCCEEEEEEEE
T ss_pred cccccCCCCeeEEEEec
Confidence 999999 8999998886
No 61
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.67 E-value=2.7e-17 Score=139.80 Aligned_cols=66 Identities=9% Similarity=0.187 Sum_probs=54.1
Q ss_pred CCeEEEEeecCCCCC-------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEe----ccccccccccCCc-cEEEec
Q psy16353 17 PNISLLLCSSLNKPE-------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLS----TNIAESSITVPDV-KYVVDF 84 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~-------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gldi~~v-~~VI~~ 84 (132)
++++||||+|++.++ ..+.+..+||++. +++++|++|+.+|||| ||++++|+|+|+| ++||++
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~ 349 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFV 349 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEe
Confidence 578999999998873 2289999999984 5778899999999999 9999999999995 999999
Q ss_pred CCC
Q psy16353 85 CLT 87 (132)
Q Consensus 85 ~~p 87 (132)
|+|
T Consensus 350 ~~P 352 (1054)
T 1gku_B 350 GCP 352 (1054)
T ss_dssp SCC
T ss_pred CCC
Confidence 999
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.65 E-value=2.6e-17 Score=129.59 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEec-cccccccccCCccEEEecCC
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLST-NIAESSITVPDVKYVVDFCL 86 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT-~~~~~Gldi~~v~~VI~~~~ 86 (132)
..+..+||++ .+.+ +.+..+..+||+|++++|.++++.|.+|+.+||||| +++++|+|+|++++||.++.
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~ 425 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG 425 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC
Confidence 3456677776 4444 244589999999999999999999999999999999 99999999999999999999
Q ss_pred CceeeecCCCCcccccccccCHhhHHHhhcccCCCCCce-EEEEE
Q psy16353 87 TKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGR-VYYMV 130 (132)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~g~-~~~l~ 130 (132)
|. |..+|.||+||+||.+++. ++.+|
T Consensus 426 ~~------------------s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 426 VK------------------SKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp CC------------------SCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred CC------------------CHHHHHHHHhcccccCCCCceEEEE
Confidence 96 4689999999999995443 55554
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.63 E-value=5.4e-17 Score=138.43 Aligned_cols=66 Identities=14% Similarity=0.289 Sum_probs=60.0
Q ss_pred CCeEEEEeecCCCCC--------CCceEE-EecCCCCHHHHHHHhhcCCCCceEEEEe----ccccccccccCC-ccEEE
Q psy16353 17 PNISLLLCSSLNKPE--------VQWKIV-VLHSSIPKEQQDLVFTRFPPGVRKIVLS----TNIAESSITVPD-VKYVV 82 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~--------~~~~~~-~lh~~l~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gldi~~-v~~VI 82 (132)
++++||||++++.++ .++.+. .+||+ |.+ +++|++|+.+|||| |+++++|+|+|+ |++||
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 489999999998883 688998 99983 455 99999999999999 999999999999 99999
Q ss_pred ecCCCc
Q psy16353 83 DFCLTK 88 (132)
Q Consensus 83 ~~~~p~ 88 (132)
++|+|.
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999998
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.61 E-value=2.8e-16 Score=126.00 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCeEEEEeecCCCCC----------------CCceEEEecCCCCHHHHHHHhhcCCCCceE---EEEeccccccccccC
Q psy16353 16 SPNISLLLCSSLNKPE----------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRK---IVLSTNIAESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gldi~ 76 (132)
..+++||||++++.++ .+-.+..+||+++. +|++++++|++|+.+ |++||+++++|+|+|
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 4579999999998883 12237889999764 699999999998766 889999999999999
Q ss_pred CccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCC
Q psy16353 77 DVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSE 123 (132)
Q Consensus 77 ~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~ 123 (132)
++++||+++.|. |...|+||+||+||..+
T Consensus 517 ~v~~Vi~~~~~~------------------s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVN------------------SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCC------------------CHHHHHHHHTTSCCCBG
T ss_pred heeEEEEEecCC------------------ChHHHHHHHhhhcccCc
Confidence 999999999997 57899999999999854
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.59 E-value=2e-15 Score=133.09 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=74.1
Q ss_pred EEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhh
Q psy16353 36 IVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRA 115 (132)
Q Consensus 36 ~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~ 115 (132)
+..+||+|++++|..+.+.|++|..+|||||+.++.|+|+|.+++||.. ...|+|..+ ...+.|..+|.||+
T Consensus 381 va~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~----~~~~ls~~~~~Qm~ 452 (1724)
T 4f92_B 381 FAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKG----RWTELGALDILQML 452 (1724)
T ss_dssp EEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTT----EEEECCHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCC----CcccCCHHHHHHhh
Confidence 7789999999999999999999999999999999999999999999853 223555432 23456899999999
Q ss_pred cccCCCC---CceEEEEEe
Q psy16353 116 GRVGRVS---EGRVYYMVT 131 (132)
Q Consensus 116 GR~gR~~---~g~~~~l~s 131 (132)
|||||.+ .|.++.+.+
T Consensus 453 GRAGR~g~d~~G~~ii~~~ 471 (1724)
T 4f92_B 453 GRAGRPQYDTKGEGILITS 471 (1724)
T ss_dssp TTBSCTTTCSCEEEEEEEE
T ss_pred hhccCCCCCCccEEEEEec
Confidence 9999983 688887765
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.57 E-value=7.3e-16 Score=121.04 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCCeEEEEeecCCCCC---------CCceEEEecCCCCHHHHHHHhhcCCCC-ceE-EEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE---------VQWKIVVLHSSIPKEQQDLVFTRFPPG-VRK-IVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---------~~~~~~~lh~~l~~~~r~~~~~~f~~g-~~~-vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++||||++...++ .++.+..+||++++++|.+++++|+++ ..+ +|++|+++++|+|++++++||++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 5679999999877652 378899999999999999999999988 444 78999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC-C--CceEEEEEe
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV-S--EGRVYYMVT 131 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~-~--~g~~~~l~s 131 (132)
|+|.+ +..|.||+||++|. + +..+|.|++
T Consensus 420 d~~~~------------------~~~~~Q~~gR~~R~Gq~~~v~v~~lv~ 451 (500)
T 1z63_A 420 DRWWN------------------PAVEDQATDRVYRIGQTRNVIVHKLIS 451 (500)
T ss_dssp SCCSC------------------C---CHHHHTTTTTTTTSCEEEEEEEE
T ss_pred CCCCC------------------cchHHHHHHHHHHcCCCCeeEEEEEEe
Confidence 99974 58999999999998 3 334577765
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.54 E-value=9e-15 Score=118.85 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=86.2
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCce---EEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVR---KIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~---~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++|||+++....+ .++.+..+||+++.++|.+++++|.++.. .+|++|++++.|+|++++++||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 4679999999877662 68899999999999999999999998865 489999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCCC---CceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVS---EGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~---~g~~~~l~s~ 132 (132)
|.|.. ++.+.||+||++|.+ +..+|+|+++
T Consensus 495 d~~wn------------------p~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 495 DPDWN------------------PANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SCCSS------------------HHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCC------------------ccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 99984 699999999999983 3457777653
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.51 E-value=6.9e-15 Score=129.73 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=73.2
Q ss_pred eEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHh
Q psy16353 35 KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQR 114 (132)
Q Consensus 35 ~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR 114 (132)
.+..+||+|++++|..+.+.|++|..+|||||+.+++|+|+|...+||.... .|+... ....+.+..+|.||
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~----~~dg~~----~~~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQ----YYNGKI----HAYVDYPIYDVLQM 1286 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSE----EEETTT----TEEEECCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCc----cccCcc----cccCCCCHHHHHHh
Confidence 3778999999999999999999999999999999999999999999986421 233221 12345578999999
Q ss_pred hcccCCCC---CceEEEEEe
Q psy16353 115 AGRVGRVS---EGRVYYMVT 131 (132)
Q Consensus 115 ~GR~gR~~---~g~~~~l~s 131 (132)
+|||||.+ .|.|+.++.
T Consensus 1287 ~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1287 VGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HTTBCCTTTCSCEEEEEEEE
T ss_pred hccccCCCCCCceEEEEEec
Confidence 99999983 699998765
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.4e-14 Score=116.22 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=85.9
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcCCCCce---EEEEeccccccccccCCccEEEec
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRFPPGVR---KIVLSTNIAESSITVPDVKYVVDF 84 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~---~vlvaT~~~~~Gldi~~v~~VI~~ 84 (132)
...++|||+......+ .++.+..+||+++.++|++++++|..+.. .+|++|.+++.|+|++.+++||.+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~ 650 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIF 650 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEES
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEe
Confidence 4569999998776552 68899999999999999999999998654 499999999999999999999999
Q ss_pred CCCceeeecCCCCcccccccccCHhhHHHhhcccCCC---CCceEEEEEeC
Q psy16353 85 CLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRV---SEGRVYYMVTR 132 (132)
Q Consensus 85 ~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~---~~g~~~~l~s~ 132 (132)
|.+.. +..+.||+||+.|. ++..+|+|+++
T Consensus 651 D~~wn------------------p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~ 683 (800)
T 3mwy_W 651 DSDWN------------------PQADLQAMARAHRIGQKNHVMVYRLVSK 683 (800)
T ss_dssp SCCSC------------------SHHHHHHHTTTSCSSCCSCEEEEEEEET
T ss_pred cCCCC------------------hhhHHHHHHHHHhcCCCceEEEEEEecC
Confidence 99974 58999999999997 34667888764
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.06 E-value=8.1e-11 Score=100.05 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=51.8
Q ss_pred HHHHHhhcCCCCceEEEEeccccccccccCCccEEEecCCCceeeecCCCCcccccccccCHhhHHHhhcccCCCCC
Q psy16353 47 QQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSE 123 (132)
Q Consensus 47 ~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~qR~GR~gR~~~ 123 (132)
+|..++++|+.|+.++||+||++.+|+|+|.+ .++.+|.|.. ...|+||+||++|..+
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~------------------~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLR------------------YHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCC------------------HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCC------------------ccceeehhhccCcCCC
Confidence 37788899999999999999999999999999 6778888874 6899999999999843
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.88 E-value=2.9e-06 Score=67.57 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=59.4
Q ss_pred CCCCeEEEEeecCCCCC------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEE--eccccccccccCC----ccEEE
Q psy16353 15 FSPNISLLLCSSLNKPE------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVL--STNIAESSITVPD----VKYVV 82 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlv--aT~~~~~Gldi~~----v~~VI 82 (132)
..+++++||++|....+ .+.. +..++.. .++.++++.|+.+. .|++ +|+.+.+|+|+|+ +++||
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSGIP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTTSC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhccCc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 35789999999987652 2233 3445553 35677888887754 5666 8999999999997 89999
Q ss_pred ecCCCceeeecCCCC-------------cccccccccCHhhHHHhhcccCCC--CCceEE
Q psy16353 83 DFCLTKVLTVAEGSN-------------YSSLQLEWASESSCQQRAGRVGRV--SEGRVY 127 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~-------------~~~~~~~~~s~~~~~qR~GR~gR~--~~g~~~ 127 (132)
..++|....-+|... +..... +.......|.+||+-|. ..|..+
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIH-DLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHH-HHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHH-HHHHHHHHHHhCCcccCCCccEEEE
Confidence 999997543333221 000000 01145678999999997 345543
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.48 E-value=0.05 Score=46.15 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccccC
Q psy16353 32 VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVP 76 (132)
Q Consensus 32 ~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gldi~ 76 (132)
.+++.-.|++.-..+|-+-+-++-+. -.|-||||+|.||.||-
T Consensus 542 ~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIk 584 (997)
T 2ipc_A 542 QGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIK 584 (997)
T ss_dssp HCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCC
T ss_pred cCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCee
Confidence 45666667766444443333344444 36889999999999983
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.81 E-value=0.022 Score=46.13 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=62.3
Q ss_pred CCCeEEEEeecCCCCC---CC---ceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc--ccccccccCC--ccEEEecC
Q psy16353 16 SPNISLLLCSSLNKPE---VQ---WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN--IAESSITVPD--VKYVVDFC 85 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~---~~---~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~--~~~~Gldi~~--v~~VI~~~ 85 (132)
.++.++||++|....+ .. +... ...+++..++.+++++|+ +...||+++. .+..|+|+|+ .+.||-.+
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 4788999999866542 11 1111 444555667889999999 7888999974 8999999985 66899899
Q ss_pred CCceeeecCCCCcc--cc-----------cccccCHhhHHHhhcccCCC--CCceEE
Q psy16353 86 LTKVLTVAEGSNYS--SL-----------QLEWASESSCQQRAGRVGRV--SEGRVY 127 (132)
Q Consensus 86 ~p~~~~~~~~~~~~--~~-----------~~~~~s~~~~~qR~GR~gR~--~~g~~~ 127 (132)
+|-... +|..... .+ -..+ -.....|-+||+=|. ..|..+
T Consensus 525 lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 525 LPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp CCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEE
T ss_pred CCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEE
Confidence 996532 3321100 00 0111 234567999999887 345443
No 74
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=94.24 E-value=0.18 Score=37.82 Aligned_cols=95 Identities=9% Similarity=-0.045 Sum_probs=55.0
Q ss_pred CCCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccccc-----cCCccEEE
Q psy16353 16 SPNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSIT-----VPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gld-----i~~v~~VI 82 (132)
.+.+++||+...+.. ..++...-+-|.....+++. ......+.+.|..+.-|++ +...+.||
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k~-----~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAA-----NDFSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhhc-----ccCCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 467999999865554 37899999999855433221 2344566666665555665 67888899
Q ss_pred ecCCCceeeecCCCCcccccccccCHhhHHH---hhcccC--CCCCceEEEEEeC
Q psy16353 83 DFCLTKVLTVAEGSNYSSLQLEWASESSCQQ---RAGRVG--RVSEGRVYYMVTR 132 (132)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~~q---R~GR~g--R~~~g~~~~l~s~ 132 (132)
-+|.- |||. ...+| |+-|.| ..++-.+|+|++.
T Consensus 199 ~~Dsd----wNp~-------------~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 199 CLDTT----VDTS-------------QKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp ECSTT----CCTT-------------SHHHHHHHCCC---------CCEEEEEET
T ss_pred EECCC----CCCC-------------ChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 88755 3443 23345 444543 2356678998863
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=93.58 E-value=0.23 Score=39.32 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=63.9
Q ss_pred CCCeEEEEeecCCCCC-----CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEec--cccccccccC-----CccEEEe
Q psy16353 16 SPNISLLLCSSLNKPE-----VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLST--NIAESSITVP-----DVKYVVD 83 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT--~~~~~Gldi~-----~v~~VI~ 83 (132)
.++.++||++|....+ .+..+..=..+++.++ .++.|+.....|++++ ..+..|+|+| ..+.||-
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~~~~v~~q~~~~~~~~---~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI 468 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRISLPKYVESEDSSVED---LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVI 468 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCCSSEEECCSSCCHHH---HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhcCCcEEEcCCCCCHHH---HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEE
Confidence 5788999998876542 3334443333455544 4455533334788888 6999999999 3788999
Q ss_pred cCCCceeeecCCCCcc-----------cc---cccccCHhhHHHhhcccCCCC
Q psy16353 84 FCLTKVLTVAEGSNYS-----------SL---QLEWASESSCQQRAGRVGRVS 122 (132)
Q Consensus 84 ~~~p~~~~~~~~~~~~-----------~~---~~~~~s~~~~~qR~GR~gR~~ 122 (132)
.++|-... +|..... .. -..+ -.....|-+||+=|..
T Consensus 469 ~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~ 519 (551)
T 3crv_A 469 VGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDV 519 (551)
T ss_dssp ESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCST
T ss_pred EcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCC
Confidence 99997655 5543110 00 1111 2345678999998873
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.01 E-value=0.055 Score=45.03 Aligned_cols=66 Identities=8% Similarity=0.179 Sum_probs=54.5
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEEE
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYVV 82 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~VI 82 (132)
..++++.++|+.-+. .++.+..+||+++..++.+.++.+..|..+|+|+|. .+...+.+.++++||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 568999999877552 478999999999999999999999999999999997 334456778888766
No 77
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.81 E-value=0.48 Score=41.03 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-ccccccccCCccEEE
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-IAESSITVPDVKYVV 82 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gldi~~v~~VI 82 (132)
...+++|.++|+.-+. .++.+..+++..+..++...++....|..+|+|+|. .+...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999986551 367899999999999999999999999999999995 555567778888766
No 78
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=85.78 E-value=0.25 Score=37.14 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCCeEEEEeecCCCCC-----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccc----cccccCCccE
Q psy16353 16 SPNISLLLCSSLNKPE-----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAE----SSITVPDVKY 80 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~----~Gldi~~v~~ 80 (132)
...+++|.++|++-+. .++.+..+||+.+..++.+.++.+..|..+|+|+|+-.- .-+...++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 5678999999987662 488999999999998887777777777789999997322 1144557777
Q ss_pred EE
Q psy16353 81 VV 82 (132)
Q Consensus 81 VI 82 (132)
||
T Consensus 143 iV 144 (414)
T 3oiy_A 143 VF 144 (414)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 79
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.18 E-value=2.2 Score=29.56 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccc-cccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAE-SSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gldi~~ 77 (132)
...+++|.++|++-+. .++.+..++|+.+..++...+.. ..+|+|+|+ .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 4567999999987662 57899999999998877666544 257999996 222 2356777
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
++++|
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 88766
No 80
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=77.04 E-value=0.75 Score=39.72 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCCeEEEEeecCCCC-----------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc-----ccccccCCcc
Q psy16353 16 SPNISLLLCSSLNKP-----------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA-----ESSITVPDVK 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~-----------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~-----~~Gldi~~v~ 79 (132)
...++||.++|++-+ ..++.+..+||+++..++.+.++.+..|..+|+|+|+-. +. ++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 467899999998766 257899999999998777777888888888999999622 22 4556788
Q ss_pred EEE
Q psy16353 80 YVV 82 (132)
Q Consensus 80 ~VI 82 (132)
++|
T Consensus 199 ~lV 201 (1104)
T 4ddu_A 199 FVF 201 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 81
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.26 E-value=0.93 Score=36.35 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCCeEEEEeecCCCCC--------CCceEEEecCCCCHHHHHHHhhcC--CCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKPE--------VQWKIVVLHSSIPKEQQDLVFTRF--PPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~--------~~~~~~~lh~~l~~~~r~~~~~~f--~~g~~~vlvaT~ 67 (132)
.++.+||.++++.-+. .++.+..++|+++..++..++..+ ..+..+++++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4678999999876652 578999999999999988887776 567789999998
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=72.86 E-value=4.6 Score=27.24 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=44.5
Q ss_pred CCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----c-ccccccCC
Q psy16353 17 PNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----A-ESSITVPD 77 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gldi~~ 77 (132)
..+++|.++|++-+. .++.+..++|+.+..++.+.+.. +..+|+|+|.- . ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999976652 27899999999988776665543 34589999962 1 23356677
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
++++|
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 83
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=68.06 E-value=3.6 Score=28.03 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=39.2
Q ss_pred CCCeEEEEeecCCCC-----------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc------cccccccCCc
Q psy16353 16 SPNISLLLCSSLNKP-----------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI------AESSITVPDV 78 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~-----------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gldi~~v 78 (132)
...++++.++|++-+ ..++.+..++|+.+..++...+.. ..+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 466799999998765 257889999998877655444432 2589999961 2234567778
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
+++|
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 8766
No 84
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=67.19 E-value=5 Score=27.44 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=43.8
Q ss_pred CCCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------ccccccC
Q psy16353 16 SPNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------ESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gldi~ 76 (132)
...+++|.++|++-+. .++.+..++|+.+..++.+.+. ...|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999977651 3789999999998877665543 35899999731 1235566
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
+++++|
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 777665
No 85
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=66.73 E-value=1.6 Score=34.24 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCeEEEEeecCCCC--------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 17 PNISLLLCSSLNKP--------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 17 ~~~~ivF~~t~~~~--------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
++.+||.++++.-+ ..++.+..+||+.+..++...+.....|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57889998887655 2688999999999999888888888888889999996
No 86
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=66.05 E-value=7.7 Score=25.67 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=42.5
Q ss_pred CCCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----cc-cccccC
Q psy16353 16 SPNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----AE-SSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~~-~Gldi~ 76 (132)
...++++.++|++-+. .++.+..++|+.+..+....+. +...|+|+|.- .. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999977551 2788999999988776544332 34589999972 22 234566
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
+++++|
T Consensus 146 ~~~~lV 151 (206)
T 1vec_A 146 HVQMIV 151 (206)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 777765
No 87
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.70 E-value=4.3 Score=26.97 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=42.2
Q ss_pred CCCeEEEEeecCCCCC----------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccc-cccccCCcc
Q psy16353 16 SPNISLLLCSSLNKPE----------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAE-SSITVPDVK 79 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~----------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gldi~~v~ 79 (132)
...++++.++++.-+. ..+.+..++|+.....+.+.+.. ...|+|+|. ... ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999976652 45788999998876655444432 357999996 122 245567777
Q ss_pred EEE
Q psy16353 80 YVV 82 (132)
Q Consensus 80 ~VI 82 (132)
++|
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 88
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=61.33 E-value=6.2 Score=27.11 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=36.3
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----cccc-ccccCC
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAES-SITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gldi~~ 77 (132)
...+++|.++|++-+. .++.+..++|+....+. .+.+..+...|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999977652 46788888888665433 2344455578999994 3333 355667
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77765
No 89
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=60.55 E-value=8.8 Score=26.49 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=42.4
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------ccccccCCc
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------ESSITVPDV 78 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gldi~~v 78 (132)
..++||.++|++-+. .++.+..++|+.+..++...+. ....|+|+|.-. ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999987652 4678889999987766554442 235899999721 123566777
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
+++|
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7765
No 90
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=59.70 E-value=6.4 Score=26.52 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------ccccccCC
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------ESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gldi~~ 77 (132)
...++++.++++.-+ ..++.+..++|+.+..++.+.+. . .+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR---D--AQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT---T--CSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC---C--CCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999997765 24788999999877665544332 2 6899999622 23455667
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+++||
T Consensus 156 ~~~iV 160 (224)
T 1qde_A 156 IKMFI 160 (224)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77765
No 91
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=58.09 E-value=11 Score=26.46 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc-----ccc--cccccC
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN-----IAE--SSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gldi~ 76 (132)
...++++.++|++-+ ..+..+..++|+....++...+.. + .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN---G-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH---C-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC---C-CCEEEEcHHHHHHHHHccCCcccc
Confidence 456799999998766 246788889999887766554433 2 58999994 222 246677
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
++++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 788766
No 92
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=57.29 E-value=8.1 Score=29.24 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=44.0
Q ss_pred CCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----ccc-ccccCCc
Q psy16353 17 PNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----AES-SITVPDV 78 (132)
Q Consensus 17 ~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gldi~~v 78 (132)
..++||.++|++-+ ..++.+..+||+.+..++...+.. ...|+|+|.- +++ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 56899999998766 246788899999998776655432 3589999962 222 3456777
Q ss_pred cEEE
Q psy16353 79 KYVV 82 (132)
Q Consensus 79 ~~VI 82 (132)
+++|
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 7766
No 93
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=56.11 E-value=12 Score=25.90 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=43.8
Q ss_pred CCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----cc--cccccCC
Q psy16353 17 PNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----AE--SSITVPD 77 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gldi~~ 77 (132)
..+++|.++|++-+. .++.+..++|+.+..++...+. +...|+|+|.- +. ..+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999987652 4788999999988776555443 24589999952 22 3466777
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
++++|
T Consensus 187 ~~~lV 191 (249)
T 3ber_A 187 LKYLV 191 (249)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 88766
No 94
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=53.02 E-value=4.8 Score=34.52 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCeEEEEeecCCCCC------------CCc----eEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 17 PNISLLLCSSLNKPE------------VQW----KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~------------~~~----~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
..+++|.++|++-+. .++ .+..+||+.+..++.+..+.+.. .+|+|+|+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 457888888877651 355 78888888888776666665554 67888886
No 95
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.89 E-value=18 Score=26.27 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------ccccccCC
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------ESSITVPD 77 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gldi~~ 77 (132)
...++++.++++.-+ ..++.+..++|+....+....+. ..+|+|+|.-. ...+...+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999997655 24788999999998877666554 34799999521 12344556
Q ss_pred ccEEE
Q psy16353 78 VKYVV 82 (132)
Q Consensus 78 v~~VI 82 (132)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66655
No 96
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=49.84 E-value=8.3 Score=26.27 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=40.7
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----ccc--ccccC
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----AES--SITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~--Gldi~ 76 (132)
...+++|.++|++-+ ..++.+..++|+.+..+....+ +..+|+|+|.- ... .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 456899999997765 2468899999998766555444 24589999962 112 35566
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
+++++|
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 777766
No 97
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=43.55 E-value=15 Score=26.74 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.8
Q ss_pred CCCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------ccccccC
Q psy16353 16 SPNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------ESSITVP 76 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gldi~ 76 (132)
...++||.++++.-+. .++.+..++|+.+..+....+.. +..+|+|+|.-. ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCcccc
Confidence 3558999999976652 37899999999988776665543 345899999621 1234566
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
++++||
T Consensus 152 ~~~~vV 157 (391)
T 1xti_A 152 HIKHFI 157 (391)
T ss_dssp TCSEEE
T ss_pred ccCEEE
Confidence 777766
No 98
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=37.66 E-value=17 Score=30.71 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=37.6
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
....++|.++|++-+. .++.+.+++|+++.++|.... ...|+++|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 4567999999988772 689999999999998877654 248999997
No 99
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=35.67 E-value=14 Score=31.21 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=37.1
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
...+++|.++|++-+. .++.+.+++|+++.+++.... ...|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3567999999988772 689999999999988776654 258999997
No 100
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=33.41 E-value=12 Score=19.28 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.6
Q ss_pred ecCCCCHHHHHHHhhcC
Q psy16353 39 LHSSIPKEQQDLVFTRF 55 (132)
Q Consensus 39 lh~~l~~~~r~~~~~~f 55 (132)
-||+|+-.++++.++.|
T Consensus 4 ~hG~MD~~~hE~Ty~gF 20 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGF 20 (43)
T ss_dssp CTTCSCCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHH
Confidence 48999999999988876
No 101
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=32.75 E-value=7.9 Score=26.54 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccc-----ccc---cccc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNI-----AES---SITV 75 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~---Gldi 75 (132)
...+++|.++|++-+. .++.+..++|+.... ..+.....+..+|+|+|+- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999977652 466777777552221 1223334456789999952 222 4677
Q ss_pred CCccEEE
Q psy16353 76 PDVKYVV 82 (132)
Q Consensus 76 ~~v~~VI 82 (132)
.+++++|
T Consensus 174 ~~~~~lV 180 (245)
T 3dkp_A 174 ASVEWLV 180 (245)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 7888766
No 102
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=29.30 E-value=1.1e+02 Score=19.19 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=28.2
Q ss_pred CceEEEecCCCCHHHHHHHhhcCCCCceEEEEeccccccc
Q psy16353 33 QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESS 72 (132)
Q Consensus 33 ~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 72 (132)
+..+++.+|.++.+....+.+... ...|+|-||-=..|
T Consensus 26 ~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD~D~~G 63 (119)
T 2fcj_A 26 PVVIVCTNGTISDARLEELADELE--GYDVYLLADADEAG 63 (119)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECCSSHHH
T ss_pred CCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEECCCccH
Confidence 678999999988776656555554 57899999965555
No 103
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=28.29 E-value=30 Score=29.47 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCCeEEEEeecCCCCC------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKPE------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~~------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
....++|.++|++-+. .++.+.+++|+++.++|...+. ..|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~------~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYN------ADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHH------SSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
Confidence 3567999999988772 7899999999999988776652 48999997
No 104
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=25.00 E-value=39 Score=29.08 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=37.7
Q ss_pred CCCeEEEEeecCCCC------------CCCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecc
Q psy16353 16 SPNISLLLCSSLNKP------------EVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTN 67 (132)
Q Consensus 16 ~~~~~ivF~~t~~~~------------~~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~ 67 (132)
...+++|.++|..-+ ..++.+..+.|+++.+++...+. ..|+++|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~------~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYL------ADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHT------SSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcC------CCEEEECc
Confidence 345799999998866 27899999999999988877662 58999997
No 105
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=24.77 E-value=20 Score=25.77 Aligned_cols=59 Identities=17% Similarity=0.070 Sum_probs=38.6
Q ss_pred CCeEEEEeecCCCCC-------------CCceEEEecCCCCHHHHHHHhhcCCCCceEEEEecccc------c-cccccC
Q psy16353 17 PNISLLLCSSLNKPE-------------VQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIA------E-SSITVP 76 (132)
Q Consensus 17 ~~~~ivF~~t~~~~~-------------~~~~~~~lh~~l~~~~r~~~~~~f~~g~~~vlvaT~~~------~-~Gldi~ 76 (132)
..++||.++|++-+. .++.+..++|+...... .....+|+|+|+-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999987651 36778888877543211 12345799999732 1 356677
Q ss_pred CccEEE
Q psy16353 77 DVKYVV 82 (132)
Q Consensus 77 ~v~~VI 82 (132)
+++++|
T Consensus 235 ~l~~lV 240 (300)
T 3fmo_B 235 KIKVFV 240 (300)
T ss_dssp GCSEEE
T ss_pred hceEEE
Confidence 888866
No 106
>3tdq_A PILY2 protein; fimbiria, cell adhesion, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=22.80 E-value=1.1e+02 Score=18.21 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=34.6
Q ss_pred CCCCeEEEEeecCCCCCCCceEEEecCCCCHHHHHHHhhcC
Q psy16353 15 FSPNISLLLCSSLNKPEVQWKIVVLHSSIPKEQQDLVFTRF 55 (132)
Q Consensus 15 ~~~~~~ivF~~t~~~~~~~~~~~~lh~~l~~~~r~~~~~~f 55 (132)
..++..+=|.-+..+--+.+.-+.+|..|++++..+.+++-
T Consensus 47 vrpGsvVS~sGsvssp~p~I~siyilrQ~s~~e~~~~~~~~ 87 (98)
T 3tdq_A 47 VKPGSVVSYSGTVSQPWSTITDIYIHKQMSEQELAEMIEKE 87 (98)
T ss_dssp CCTTCEEEEEEECCSSSCEEEEEEECCTTSEEHHHHHHHHC
T ss_pred EcCCcEEEEeeeecCCCccceEEEEEecCCHHHHHHHHhhc
Confidence 46888888888888777889999999999999988877654
No 107
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=22.22 E-value=93 Score=22.19 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=36.9
Q ss_pred hhcCCCCceEEEEeccccccccccCCccEEEecCCCceee-ecCCCCcccccccccCHhhHHHhhc-----ccCCC-CCc
Q psy16353 52 FTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLT-VAEGSNYSSLQLEWASESSCQQRAG-----RVGRV-SEG 124 (132)
Q Consensus 52 ~~~f~~g~~~vlvaT~~~~~Gldi~~v~~VI~~~~p~~~~-~~~~~~~~~~~~~~~s~~~~~qR~G-----R~gR~-~~g 124 (132)
+...+.|.. |-+.|+ ..|+|+..+-++|..+ .... .+....-...+..+.+-.+|.+..- |+.|. .||
T Consensus 169 l~~l~~GDi-I~i~t~--~~GLDVsHvGi~i~~~--~~l~f~hASs~~~kVv~s~~~l~~Y~~~~~~~~GI~V~R~~~~~ 243 (249)
T 2p1g_A 169 LPWIKNGDI-IALTTN--TPGLDVSHMGIAIYIK--GQLHLLHASSKEGKVVVGKTALSQMLKDRKSLTGIRVLRMKKEG 243 (249)
T ss_dssp CTTSCTTCE-EEEEEC--STTCSEEEEEEEEEET--TEEEEEEEETTTTEEEECSSCHHHHHHTCTTEEEEEEEEC----
T ss_pred HhcCCCCCE-EEEEeC--CCCCceeEEEEEEEEC--CeEEEEEcCCCCCeEEECCcCHHHHHhcCCCCccEEEEeeCCCC
Confidence 466788885 445554 3799999999888653 1111 1222111112222346688999865 55666 666
Q ss_pred e
Q psy16353 125 R 125 (132)
Q Consensus 125 ~ 125 (132)
+
T Consensus 244 ~ 244 (249)
T 2p1g_A 244 H 244 (249)
T ss_dssp -
T ss_pred c
Confidence 5
No 108
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=20.89 E-value=66 Score=19.21 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=17.9
Q ss_pred ecCCCCHHHHHHHhhcCCCCc
Q psy16353 39 LHSSIPKEQQDLVFTRFPPGV 59 (132)
Q Consensus 39 lh~~l~~~~r~~~~~~f~~g~ 59 (132)
+-+.+++++|+++++.|..|-
T Consensus 57 m~~~lt~~ek~elieeFn~G~ 77 (90)
T 1jr5_A 57 IVSELTQEDKKTLIDEFNEGF 77 (90)
T ss_dssp HHHTCCHHHHHHHHTTSSSSS
T ss_pred HHHHCCHHHHHHHHHHHhccc
Confidence 446799999999999998875
Done!