RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16353
(132 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 71.9 bits (176), Expect = 1e-16
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 35 KIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLT-KVLTVA 93
+VVL+ + + +L+T+IAE + V+ V+D K + V
Sbjct: 62 SVVVLNRKTFEREY----PTIKQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVD 116
Query: 94 EGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130
EG + S SS QR GR+GR
Sbjct: 117 EGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 153
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 62.2 bits (150), Expect = 4e-13
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 34 WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDF--CLTKVLT 91
K++ L + + V++T+I+E + V+D C+ V+
Sbjct: 203 KKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVIL 257
Query: 92 VAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130
+ SS QR GRVGR + +
Sbjct: 258 TDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 47.2 bits (111), Expect = 7e-08
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 40 HSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTVAEGSNYS 99
+ + +Q L+ F G ++++T++ E + VP+V VV +
Sbjct: 200 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP----------- 248
Query: 100 SLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132
S QR GR GR GRV ++ +
Sbjct: 249 -------SAIRSIQRRGRTGRHMPGRVIILMAK 274
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 39.1 bits (90), Expect = 4e-05
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 22/104 (21%)
Query: 33 QWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTKVLTV 92
+ I + +E+++ + F G + ++S+ + + I VPD V +
Sbjct: 112 VFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG---- 167
Query: 93 AEGSNYSSLQLEWASESSCQQRAGRVGRVSEGR----VYYMVTR 132
S QR GR+ R S+G+ +Y +++R
Sbjct: 168 --------------SAREYIQRLGRILRPSKGKKEAVLYELISR 197
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 31.4 bits (71), Expect = 0.022
Identities = 14/107 (13%), Positives = 22/107 (20%), Gaps = 25/107 (23%)
Query: 34 WKIVVLHSSIPKEQ----------QDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVD 83
V + + G V+ N + +
Sbjct: 61 INAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFT 120
Query: 84 FCLTKVLTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMV 130
T + A S QR GR GR G ++
Sbjct: 121 IETTTLPQDAV---------------SRTQRRGRTGRGKPGIYRFVA 152
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 29.9 bits (66), Expect = 0.063
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 14/107 (13%)
Query: 29 KPEVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKYVVDFCLTK 88
V+ H+ + Q+ +V F G K+V++T + + +P + V+ L +
Sbjct: 90 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPA-RRVIVRSLYR 148
Query: 89 VLTVAEGSNYSSLQLEWASESSCQQRAGRVGR---VSEGRVYYMVTR 132
+ S +Q AGR GR G +V +
Sbjct: 149 F----------DGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 185
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 27.0 bits (58), Expect = 0.76
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 90 LTVAEGSNYSSLQLEWASESSCQQRAGRVGRVSEGRVYYMVTR 132
LT A + A E R R+G+ V+ +++
Sbjct: 154 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 196
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 25.8 bits (56), Expect = 1.5
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 107 SESSCQQRAGRVGRVSEGRVYYMVTR 132
S QR GR GR G ++
Sbjct: 111 DAVSRTQRRGRTGRGKPGIYRFVAPG 136
>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374
{Burkholderia xenovorans [TaxId: 36873]}
Length = 128
Score = 24.4 bits (52), Expect = 3.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 33 QWKIVVLHSSIPKE 46
WKIV H S+
Sbjct: 114 GWKIVAAHVSLIAM 127
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973
{Shewanella frigidimarina [TaxId: 56812]}
Length = 121
Score = 24.5 bits (52), Expect = 3.8
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 29 KPEVQWKIVVLHSS 42
+ + +WKI +H S
Sbjct: 108 QADGRWKITHVHWS 121
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 87
Score = 23.9 bits (52), Expect = 4.5
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 34 WKIVVLHSSIPKEQQDLVFTRFPPGVRKIVLSTNIAESSITVPDVKY 80
K V+ ++ + +E Q + K + +IA D KY
Sbjct: 2 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKY 48
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 24.2 bits (52), Expect = 5.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 2 VDIKPGTFSPHATFSPNISLLLCSSLNKP 30
VD+ G F P+ T P + L + P
Sbjct: 42 VDVMDGRFVPNITIGPLVVDSLRPITDLP 70
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 24.3 bits (52), Expect = 5.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 2 VDIKPGTFSPHATFSPNISLLLCSSLNKP 30
VD+ G F P+ T P I + K
Sbjct: 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKT 62
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 24.0 bits (51), Expect = 6.2
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 17 PNISLLLCSSLNKPEVQWKIVVLHSSIPKEQQ---DLVFTRFPPGVRKIVLSTNIAESSI 73
P ++ +L ++ E K + L + P +Q + RF G ++VLS AE S
Sbjct: 86 PGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSS 145
Query: 74 TVPDVKYVVDFCLTKVLTVAEGSNYSS 100
+ V+Y+ ++ K L+V N+ +
Sbjct: 146 S---VEYINNWEQAKALSVELEINFET 169
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 24.0 bits (52), Expect = 6.4
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 29 KPEVQWKIVVLHSSIPKEQQDLVFTRFPPGVRKIV 63
+PE Q K+ V + + ++L+ + FP +KI
Sbjct: 4 QPEAQAKVDVFREDLCTKTENLLGSYFP---KKIS 35
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125
{Shewanella oneidensis [TaxId: 70863]}
Length = 121
Score = 23.7 bits (50), Expect = 6.5
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 33 QWKIVVLHSS 42
+W I + HSS
Sbjct: 111 RWVITMDHSS 120
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500
{Pectobacterium atrosepticum [TaxId: 29471]}
Length = 127
Score = 23.6 bits (50), Expect = 7.2
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 33 QWKIVVLHSSI 43
W+IV H S+
Sbjct: 115 GWRIVAAHVSL 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,700
Number of extensions: 19031
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 21
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)