BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16355
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 56 VYFQTPDCTQAILSSTEHIDKSTEYALL-----DVWLGTGLITSTG-QKWHHRRKLLTPA 109
V +P+ + L ST++ S Y L + G GL++ ++WH +R+++ A
Sbjct: 37 VIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVIDLA 96
Query: 110 FHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168
F + L +++E + + LV+ L + D + + ++ T +DI+ + G + L
Sbjct: 97 FSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSML 156
Query: 169 KNQNSAYTQAVGIVAE 184
+QAV ++ E
Sbjct: 157 LGAQKPLSQAVKLMLE 172
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 86 WLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGF--- 142
++ + + + ++W R LL+P F L+ M+ + D+LV L +E +
Sbjct: 93 FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTL 152
Query: 143 -DVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQ 177
DVF ++D++ T+ G ++ +L N + +
Sbjct: 153 KDVF---GAYSMDVITSTSFGVNIDSLNNPQDPFVE 185
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 86 WLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGF--- 142
++ + + + ++W R LL+P F L+ M+ + D+LV L +E +
Sbjct: 91 FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTL 150
Query: 143 -DVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQ 177
DVF ++D++ T+ G ++ +L N + +
Sbjct: 151 KDVF---GAYSMDVITSTSFGVNIDSLNNPQDPFVE 183
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 86 WLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGF--- 142
++ + + + ++W R LL+P F L+ M+ + D+LV L +E +
Sbjct: 92 FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTL 151
Query: 143 -DVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQ 177
DVF ++D++ T+ G ++ +L N + +
Sbjct: 152 KDVF---GAYSMDVITSTSFGVNIDSLNNPQDPFVE 184
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHID---------KST-E 79
E + ++ + + + W +P+++ P A++ E ++ K+T +
Sbjct: 8 EAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQ 67
Query: 80 YALLDVWLGTGLITSTGQKWHHRRKLLTPAF 110
Y L G GL+T G+ W RK L F
Sbjct: 68 YRALSRLTGRGLLTDWGESWKEARKALKDPF 98
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 49 WLGPYPKVYFQTPDCTQAILSSTEHID---------KST-EYALLDVWLGTGLITSTGQK 98
W +P+++ P A++ E ++ K+T +Y L G GL+T G+
Sbjct: 27 WGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGKS 86
Query: 99 WHHRRKLLTPAFHYNILETMLEPMQD 124
W RK L F + E M++
Sbjct: 87 WKEARKALKDPFLPKSVRGYREAMEE 112
>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 255
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 94 STGQKWHHR--RKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLT 151
S Q H R RK+++ + + L Q T+ ++ + +++E++N+ D+FP+ +
Sbjct: 154 SYAQSSHIRAIRKVISEILTKEVQGSTL--AQLTSKLIPEVINKEIENATKDIFPLQNIH 211
Query: 152 TLDIVCETTMGYDLGAL 168
+ +D+GAL
Sbjct: 212 VRKVKLLKQPKFDVGAL 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,939,718
Number of Sequences: 62578
Number of extensions: 277929
Number of successful extensions: 476
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 19
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)