Query psy16355
Match_columns 228
No_of_seqs 194 out of 1868
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 19:14:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156|consensus 99.9 1.4E-26 3E-31 187.0 16.5 211 16-227 33-253 (489)
2 PLN02738 carotene beta-ring hy 99.9 1.7E-25 3.8E-30 187.0 20.7 165 20-185 142-308 (633)
3 KOG0157|consensus 99.9 2.5E-25 5.4E-30 182.0 18.9 215 11-227 37-256 (497)
4 PLN02936 epsilon-ring hydroxyl 99.9 2.8E-24 6E-29 176.3 21.2 202 24-226 31-237 (489)
5 PLN02290 cytokinin trans-hydro 99.9 3.3E-24 7.2E-29 177.2 18.4 187 34-226 85-276 (516)
6 PLN02687 flavonoid 3'-monooxyg 99.9 5.2E-24 1.1E-28 175.9 18.0 209 16-226 41-257 (517)
7 PTZ00404 cytochrome P450; Prov 99.9 1.7E-24 3.7E-29 177.6 13.2 152 16-168 36-190 (482)
8 PLN02169 fatty acid (omega-1)- 99.9 1.8E-23 3.9E-28 171.7 19.3 212 16-227 38-261 (500)
9 PLN03234 cytochrome P450 83B1; 99.9 1.1E-23 2.4E-28 173.5 16.7 212 16-227 35-253 (499)
10 PF00067 p450: Cytochrome P450 99.9 3.9E-24 8.6E-29 173.9 12.6 212 15-227 5-226 (463)
11 PLN00110 flavonoid 3',5'-hydro 99.9 5.4E-23 1.2E-27 169.2 17.2 209 16-226 38-254 (504)
12 PLN02183 ferulate 5-hydroxylas 99.9 3.7E-23 8E-28 170.8 16.0 204 16-226 43-252 (516)
13 KOG0159|consensus 99.9 3.8E-22 8.3E-27 157.4 20.4 200 25-227 69-284 (519)
14 PLN02196 abscisic acid 8'-hydr 99.9 4.8E-23 1E-27 168.0 15.0 148 14-165 40-188 (463)
15 PLN02500 cytochrome P450 90B1 99.9 7E-23 1.5E-27 168.3 15.4 147 16-166 45-198 (490)
16 PLN02966 cytochrome P450 83A1 99.9 7.6E-23 1.7E-27 168.5 15.5 154 16-169 36-195 (502)
17 PLN02655 ent-kaurene oxidase 99.9 2.5E-22 5.4E-27 164.0 17.1 154 16-169 6-167 (466)
18 PLN02971 tryptophan N-hydroxyl 99.9 2.5E-22 5.4E-27 166.7 17.3 150 16-166 64-222 (543)
19 PLN00168 Cytochrome P450; Prov 99.9 3.9E-22 8.5E-27 164.8 17.7 150 16-166 42-200 (519)
20 PLN03112 cytochrome P450 famil 99.9 2.7E-22 5.9E-27 165.8 15.9 151 16-167 39-195 (514)
21 PLN03195 fatty acid omega-hydr 99.9 1.1E-21 2.4E-26 162.2 18.9 207 16-226 37-253 (516)
22 PLN02394 trans-cinnamate 4-mon 99.9 1E-21 2.2E-26 162.0 16.7 154 16-169 37-197 (503)
23 PLN03141 3-epi-6-deoxocathaste 99.9 8.5E-22 1.8E-26 160.4 13.8 146 16-165 14-166 (452)
24 KOG0158|consensus 99.9 1.4E-21 3.1E-26 156.6 14.2 169 17-185 39-213 (499)
25 PLN02774 brassinosteroid-6-oxi 99.9 3E-21 6.4E-26 157.6 15.5 194 16-226 38-234 (463)
26 PLN02302 ent-kaurenoic acid ox 99.9 8.4E-21 1.8E-25 156.2 16.6 149 14-166 47-203 (490)
27 PLN02426 cytochrome P450, fami 99.9 6.4E-20 1.4E-24 150.8 20.0 207 18-227 50-268 (502)
28 PLN03018 homomethionine N-hydr 99.8 9.3E-20 2E-24 150.7 17.8 151 16-167 47-206 (534)
29 PLN02987 Cytochrome P450, fami 99.8 1.6E-19 3.4E-24 147.4 15.1 197 12-226 33-236 (472)
30 PLN02648 allene oxide synthase 99.8 2.4E-18 5.1E-23 140.1 12.5 149 16-167 24-194 (480)
31 COG2124 CypX Cytochrome P450 [ 99.5 4.2E-13 9.2E-18 107.9 11.7 177 32-227 25-208 (411)
32 KOG0684|consensus 99.4 9.1E-12 2E-16 97.4 12.6 203 13-226 36-242 (486)
33 PLN03134 glycine-rich RNA-bind 69.8 11 0.00024 25.8 4.3 56 12-70 31-95 (144)
34 PF13625 Helicase_C_3: Helicas 67.9 21 0.00045 23.9 5.3 42 28-71 73-114 (129)
35 PRK13781 paaB phenylacetate-Co 67.9 5.9 0.00013 24.8 2.3 64 18-81 22-87 (95)
36 PF13893 RRM_5: RNA recognitio 65.0 20 0.00044 19.5 4.1 34 36-69 2-39 (56)
37 cd08780 Death_TRADD Death Doma 64.8 27 0.00058 21.7 4.7 67 96-162 13-89 (90)
38 PF00076 RRM_1: RNA recognitio 61.2 25 0.00055 19.8 4.3 49 19-70 2-58 (70)
39 smart00362 RRM_2 RNA recogniti 61.0 27 0.00058 19.4 5.5 38 32-69 13-57 (72)
40 PF08780 NTase_sub_bind: Nucle 57.0 48 0.001 22.0 5.4 40 83-123 66-108 (124)
41 KOG3793|consensus 56.9 38 0.00083 25.8 5.3 92 96-192 176-268 (362)
42 TIGR01661 ELAV_HUD_SF ELAV/HuD 53.8 32 0.0007 27.3 5.0 50 18-70 272-330 (352)
43 TIGR02157 PA_CoA_Oxy2 phenylac 50.7 16 0.00035 22.7 2.1 64 18-81 17-82 (90)
44 smart00360 RRM RNA recognition 49.4 44 0.00095 18.3 5.1 38 32-69 10-56 (71)
45 COG1707 ACT domain-containing 46.7 30 0.00066 24.3 3.2 36 28-63 153-193 (218)
46 PF14259 RRM_6: RNA recognitio 45.6 40 0.00086 19.2 3.4 48 20-70 3-58 (70)
47 TIGR01659 sex-lethal sex-letha 41.7 70 0.0015 25.7 5.0 53 15-70 107-168 (346)
48 PLN03120 nucleic acid binding 39.0 1E+02 0.0022 23.6 5.2 51 17-70 6-62 (260)
49 TIGR01659 sex-lethal sex-letha 38.0 93 0.002 25.0 5.2 51 17-70 195-254 (346)
50 KOG0107|consensus 37.7 63 0.0014 23.1 3.6 53 13-68 8-64 (195)
51 cd00590 RRM RRM (RNA recogniti 37.1 75 0.0016 17.5 5.2 39 32-70 13-59 (74)
52 PF09926 DUF2158: Uncharacteri 34.3 49 0.0011 18.3 2.2 17 42-58 3-19 (53)
53 COG3140 Uncharacterized protei 34.1 10 0.00023 20.9 -0.4 8 1-8 24-31 (60)
54 KOG0109|consensus 32.1 86 0.0019 24.4 3.9 50 17-69 4-54 (346)
55 PF03460 NIR_SIR_ferr: Nitrite 30.2 1.1E+02 0.0024 17.4 4.7 40 29-68 23-63 (69)
56 COG4565 CitB Response regulato 29.9 2.4E+02 0.0051 21.1 6.7 108 26-161 56-168 (224)
57 PRK10597 DNA damage-inducible 29.5 1.4E+02 0.003 18.3 4.5 37 33-69 24-68 (81)
58 KOG0114|consensus 29.1 1.6E+02 0.0036 19.1 4.2 49 17-68 20-74 (124)
59 PF12385 Peptidase_C70: Papain 27.6 1.2E+02 0.0027 21.2 3.7 22 31-52 97-118 (166)
60 PHA01327 hypothetical protein 27.4 24 0.00051 18.2 0.2 17 89-105 12-28 (49)
61 KOG0149|consensus 26.8 1.3E+02 0.0028 22.6 3.9 54 15-71 12-74 (247)
62 TIGR01661 ELAV_HUD_SF ELAV/HuD 24.5 1.6E+02 0.0035 23.3 4.6 50 17-69 5-63 (352)
63 PF09061 Stirrup: Stirrup; In 24.4 1.3E+02 0.0027 17.4 2.8 28 32-60 9-36 (79)
64 PF12979 DUF3863: Domain of Un 24.3 47 0.001 25.2 1.3 38 30-67 77-114 (351)
65 cd01403 Cyt_c_Oxidase_VIIb Cyt 24.2 55 0.0012 17.6 1.2 12 37-48 4-15 (51)
66 TIGR01649 hnRNP-L_PTB hnRNP-L/ 23.2 1.9E+02 0.0042 24.4 5.0 52 16-70 276-332 (481)
67 KOG0110|consensus 22.7 84 0.0018 27.6 2.7 52 16-70 386-440 (725)
68 PF07659 DUF1599: Domain of Un 22.7 1.7E+02 0.0036 16.8 3.3 8 96-103 6-13 (61)
69 TIGR01648 hnRNP-R-Q heterogene 21.7 2.6E+02 0.0056 24.5 5.4 52 16-70 59-118 (578)
70 PRK02302 hypothetical protein; 21.4 1.7E+02 0.0037 18.3 3.2 34 37-70 21-54 (89)
71 PF03625 DUF302: Domain of unk 21.1 1.3E+02 0.0029 17.0 2.6 21 51-71 17-37 (65)
72 cd08318 Death_NMPP84 Death dom 20.8 1.2E+02 0.0026 18.6 2.5 40 96-137 18-60 (86)
73 PF08675 RNA_bind: RNA binding 20.0 2.3E+02 0.0049 17.6 3.4 40 31-70 21-61 (87)
No 1
>KOG0156|consensus
Probab=99.95 E-value=1.4e-26 Score=186.98 Aligned_cols=211 Identities=16% Similarity=0.210 Sum_probs=159.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC--CCCCchhhhhhhHhhh--cccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST--EHIDKSTEYALLDVWL--GTGL 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~--~~~~k~~~~~~~~~~~--g~~l 91 (228)
+.+++||++++....++..+.+|+++|||++.+|+|+.|+|||+|+++++|+|+++ .+.+|+........+. +.|+
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~~~~~~~~i 112 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKYLSYGGKGI 112 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHHhcCCCCce
Confidence 78999999999886799999999999999999999999999999999999999876 4555554221222222 3688
Q ss_pred ccc-CCchhhhhhhhhc-CcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 92 ITS-TGQKWHHRRKLLT-PAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 92 ~~~-~g~~w~~~Rk~l~-~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
+++ +|+.||.+||+.. ..|+.+.++.......++++.+++.+.+ .. ++++|+.+.+..++.+||++++||.++...
T Consensus 113 ~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf~~~ 191 (489)
T KOG0156|consen 113 VFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRMLFGRRFEEE 191 (489)
T ss_pred EeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHHHhCCccccC
Confidence 888 5999999999864 5689999999988889999999999987 32 379999999999999999999999999876
Q ss_pred CCCC-chHHHHHHHHHHHHHHH-hhcccc-chhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 169 KNQN-SAYTQAVGIVAEISMKR-FMLPWL-HYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 169 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
+++. .++.+.+.+..+..+.. ....++ +..|+....+..++......++.++++++|++
T Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~e 253 (489)
T KOG0156|consen 192 DEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDE 253 (489)
T ss_pred CchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 33555666655554332 112222 22222212234555666666688888888875
No 2
>PLN02738 carotene beta-ring hydroxylase
Probab=99.94 E-value=1.7e-25 Score=186.99 Aligned_cols=165 Identities=25% Similarity=0.420 Sum_probs=136.7
Q ss_pred cccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcccccccCCch
Q psy16355 20 LGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGTGLITSTGQK 98 (228)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~~l~~~~g~~ 98 (228)
+|++..+..++++..+.+|+++||||+++++|+.++|+|+||+++++|+.++ ..+.+...+.......|.++++.+|+.
T Consensus 142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~~l~~~dge~ 221 (633)
T PLN02738 142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEI 221 (633)
T ss_pred cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCCceecCCcHH
Confidence 4666666667889999999999999999999999999999999999999865 456665544444444567888889999
Q ss_pred hhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCchHHH
Q psy16355 99 WHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQ 177 (228)
Q Consensus 99 w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 177 (228)
|+.+|+.+++.|+.++++.+.+.+.+.+++++++|.+... |+++|+.+.++.+++|||+.++||.+++..+++ +++.+
T Consensus 222 wr~rRr~l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~-~~~~~ 300 (633)
T PLN02738 222 WRVRRRAIVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSND-TGIVE 300 (633)
T ss_pred HHHHHHhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccc-hHHHH
Confidence 9999999999999999999999999999999999987543 778999999999999999999999998765432 34555
Q ss_pred HHHHHHHH
Q psy16355 178 AVGIVAEI 185 (228)
Q Consensus 178 ~~~~~~~~ 185 (228)
.+...+..
T Consensus 301 ~~~~~~~~ 308 (633)
T PLN02738 301 AVYTVLRE 308 (633)
T ss_pred HHHHHHHH
Confidence 55444443
No 3
>KOG0157|consensus
Probab=99.94 E-value=2.5e-25 Score=182.04 Aligned_cols=215 Identities=31% Similarity=0.471 Sum_probs=176.4
Q ss_pred hhhhhhhhhcccccccCc--HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhh-hhHhh
Q psy16355 11 IHNFQTKRKLGLLNIKLS--VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYA-LLDVW 86 (228)
Q Consensus 11 ~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~-~~~~~ 86 (228)
+....+.+++|++..+.. .+...++.++..+||++++.|+|+.++|+++||+.+++|+.++ +...+.+.|. .+.++
T Consensus 37 ~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~~~ 116 (497)
T KOG0157|consen 37 PPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLKPW 116 (497)
T ss_pred CCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHHHH
Confidence 344456678888876533 4788899999999999999999999999999999999999654 5566776665 78889
Q ss_pred hcccccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCccc-
Q psy16355 87 LGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDL- 165 (228)
Q Consensus 87 ~g~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~- 165 (228)
+|+|+++++|+.|+++||+++|+|+...++.+.+...+.+..+++.+.....++.+|+++.++++|+|+|+++++|...
T Consensus 117 lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~G~~~~ 196 (497)
T KOG0157|consen 117 LGDGLLFSDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAMGPESL 196 (497)
T ss_pred hcCccccCCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999998888877554445999999999999999999999322
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 166 GALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
+.......++.+++..+......+...|+ ...+++... ..++.+++.+.++++++++|++
T Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~~~~-~~~~~~~a~~~~~~~~~~iI~~ 256 (497)
T KOG0157|consen 197 DAEGPELFEYVQAFDDLTELISKRINLPL-GTKFLYGLK-SERKLKKARKILHDFLEKIIRE 256 (497)
T ss_pred cccCCcccHHHHHHHHHHHHHHHHHcCch-hhhHHhhcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 22333346888888888888777777775 445553343 6788999999999999988863
No 4
>PLN02936 epsilon-ring hydroxylase
Probab=99.93 E-value=2.8e-24 Score=176.33 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=148.5
Q ss_pred cccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcccccccCCchhhhh
Q psy16355 24 NIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGTGLITSTGQKWHHR 102 (228)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~~l~~~~g~~w~~~ 102 (228)
.....+.++..+.+|+++|||++++++|+.++++++||+++++|+.+. ..+.++..+.....++|.++++++|+.|+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~~~~~i~~~~g~~wk~~ 110 (489)
T PLN02936 31 TDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFLFGSGFAIAEGELWTAR 110 (489)
T ss_pred HHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHHhcCccccCCchHHHHH
Confidence 334445788999999999999999999999999999999999999775 5566655444444456788888999999999
Q ss_pred hhhhcCcCCHHHHHHhHH-HHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHH
Q psy16355 103 RKLLTPAFHYNILETMLE-PMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVG 180 (228)
Q Consensus 103 Rk~l~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 180 (228)
||++++.|+.+++..+.+ .+.++++++++.|.+..+ |+++|+.+.++.+++|+++.++||.+++..+. ..++...+.
T Consensus 111 Rk~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~-~~~~~~~~~ 189 (489)
T PLN02936 111 RRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFNYNFDSLTT-DSPVIQAVY 189 (489)
T ss_pred HHhhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCCcccccc-CcHHHHHHH
Confidence 999999999999988755 788999999999987553 67899999999999999999999999986543 244555554
Q ss_pred HHHHHHHHHhhcccc--chhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 181 IVAEISMKRFMLPWL--HYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..+..........++ ...++....+..++..++.+.+.+++.++|+
T Consensus 190 ~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~ 237 (489)
T PLN02936 190 TALKEAETRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVD 237 (489)
T ss_pred HHHHHHHHhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHH
Confidence 444332222111111 1111111233445566666766776666554
No 5
>PLN02290 cytokinin trans-hydroxylase
Probab=99.93 E-value=3.3e-24 Score=177.19 Aligned_cols=187 Identities=15% Similarity=0.254 Sum_probs=135.8
Q ss_pred HHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhh-hhhHhhhcccccccCCchhhhhhhhhcCcCC
Q psy16355 34 FVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEY-ALLDVWLGTGLITSTGQKWHHRRKLLTPAFH 111 (228)
Q Consensus 34 ~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~-~~~~~~~g~~l~~~~g~~w~~~Rk~l~~~f~ 111 (228)
.+.+|+++||+++++++|+.++|+++||++++++|.++ ..+.++... .......|.|+++++|+.|+++||+++++|+
T Consensus 85 ~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~~~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~~~~~f~ 164 (516)
T PLN02290 85 HYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKYNTVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHIAAPAFM 164 (516)
T ss_pred HHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcCCCCCCCcchhhhHHHHHhcCCccccCchHHHHHHhhcccccC
Confidence 46889999999999999999999999999999999876 334444221 1233446788999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhC-C-CceehHHhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHHHHHHHHHH
Q psy16355 112 YNILETMLEPMQDTTDILVDRLSQELD-N-SGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKR 189 (228)
Q Consensus 112 ~~~l~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+++++.+.+.+.++++++++.|.+..+ + .++|+.+.++.+++|++++++||.+++.. +++...+..+.......
T Consensus 165 ~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~----~~~~~~~~~~~~~~~~~ 240 (516)
T PLN02290 165 GDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYMTRLTADIISRTEFDSSYEKG----KQIFHLLTVLQRLCAQA 240 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEhHHHHHHHHHHHHHHHHcCCccccc----hHHHHHHHHHHHHHHHh
Confidence 999999999999999999999986543 3 47999999999999999999999887532 33444443333322221
Q ss_pred hhc-cccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 190 FML-PWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 190 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
... .++...++ +.+..++..+..+.+.+++.++|+
T Consensus 241 ~~~~~~p~~~~~--p~~~~~~~~~~~~~~~~~~~~~i~ 276 (516)
T PLN02290 241 TRHLCFPGSRFF--PSKYNREIKSLKGEVERLLMEIIQ 276 (516)
T ss_pred hhhhcCchhhhC--CChhHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111112 333334455566667777766654
No 6
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.92 E-value=5.2e-24 Score=175.91 Aligned_cols=209 Identities=11% Similarity=0.065 Sum_probs=147.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhh--hccc-c
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVW--LGTG-L 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~--~g~~-l 91 (228)
+.+++|++..+.. +++..+.+|+++||+++++++|+.++|+++||++++++|.++ ..+.+++.......+ .+.+ +
T Consensus 41 ~~P~iG~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l 119 (517)
T PLN02687 41 GWPVLGNLPQLGP-KPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMAYNYQDLV 119 (517)
T ss_pred CCCccccHHhcCC-chhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhccCCceeE
Confidence 4688999887754 578899999999999999999999999999999999999765 444444322222222 1234 5
Q ss_pred cccCCchhhhhhhhhc-CcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCC
Q psy16355 92 ITSTGQKWHHRRKLLT-PAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKN 170 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~ 170 (228)
+..+|+.|+++||+++ ++|+.++++.+.+.+.++++++++.|.+..+++++|+.+.++.+++|+|+.++||.++...+.
T Consensus 120 ~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~ 199 (517)
T PLN02687 120 FAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCTTNALGRAMVGRRVFAGDG 199 (517)
T ss_pred eCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHhCccccccCC
Confidence 5567999999999998 899999999999999999999999997654467899999999999999999999999754322
Q ss_pred C--CchHHHHHHHHHHHHHHHh-hccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 171 Q--NSAYTQAVGIVAEISMKRF-MLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 171 ~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
+ ...+.+.+..++....... ...++.+.|+. +.+..++..+..+.+.+++.++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~ 257 (517)
T PLN02687 200 DEKAREFKEMVVELMQLAGVFNVGDFVPALRWLD-LQGVVGKMKRLHRRFDAMMNGIIE 257 (517)
T ss_pred cchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhC-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1345555555444322110 01111122221 112234555566666666666654
No 7
>PTZ00404 cytochrome P450; Provisional
Probab=99.92 E-value=1.7e-24 Score=177.56 Aligned_cols=152 Identities=15% Similarity=0.277 Sum_probs=128.7
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhh-hhHhhhcccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYA-LLDVWLGTGLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~-~~~~~~g~~l~~ 93 (228)
+.+++|++..+.. +++..+.+|+++||+++++++|+.++|+++||+++++++.++ +.+.+++... .....+|+|+++
T Consensus 36 ~~p~~G~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~~~~~l~~ 114 (482)
T PTZ00404 36 PIPILGNLHQLGN-LPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGTFYHGIVT 114 (482)
T ss_pred CCCeeccHhhhcc-cHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeeccCCceec
Confidence 4678999887755 688999999999999999999999999999999999999765 3343333222 212224788999
Q ss_pred cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
.+|+.|+++|++++++|++++++.+.+.+.++++++++.|.+..+ ++.+|+.+.+.++++|+++.++||.+++..
T Consensus 115 ~~g~~w~~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~ 190 (482)
T PTZ00404 115 SSGEYWKRNREIVGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFNEDISFD 190 (482)
T ss_pred cChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999976543 667999999999999999999999988653
No 8
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.92 E-value=1.8e-23 Score=171.74 Aligned_cols=212 Identities=19% Similarity=0.199 Sum_probs=151.7
Q ss_pred hhhhcccccccC--cHHHHHHHHHHHHHcCCeeE---EeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcc
Q psy16355 16 TKRKLGLLNIKL--SVEFFKFVSEQCNNYKGNFI---LWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGT 89 (228)
Q Consensus 16 ~~~~~g~~~~~~--~~~~~~~~~~~~~~yG~i~~---~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~ 89 (228)
+.+++||+..+. ....++.+.+..++||..++ .|+|+.++|+|+||+++++||.++ ..+.++..+.....+.|+
T Consensus 38 ~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~~~~~g~ 117 (500)
T PLN02169 38 NWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKIFDVLGE 117 (500)
T ss_pred CCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHHHHhhcC
Confidence 466888876432 22345555666666887665 678999999999999999999876 556666555444556789
Q ss_pred cccccCCchhhhhhhhhcCcCCHHHHHHh--HHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 90 GLITSTGQKWHHRRKLLTPAFHYNILETM--LEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 90 ~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~--~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
|+++++|+.|+++||+++|+|+.++++.+ .+.+.++++.+++.+.+.+. ++++|+.+.+.++|+|+|++++||.+.+
T Consensus 118 gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~ 197 (500)
T PLN02169 118 GILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSILMTGYDPM 197 (500)
T ss_pred cccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHhheeCCCcc
Confidence 99999999999999999999999988653 46777888888888876433 6689999999999999999999999886
Q ss_pred CCCC--CCchHHHHHHHHHHHHHHHhhccccchhHHhh-cCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 167 ALKN--QNSAYTQAVGIVAEISMKRFMLPWLHYDAIFK-RTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 167 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+. ...++..++.............|+..+.+... +++..++..++.+.+++++.++|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 261 (500)
T PLN02169 198 SLSIEMLEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISS 261 (500)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 5432 12456665555444333333333221111111 3445677788888888888887763
No 9
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.92 E-value=1.1e-23 Score=173.48 Aligned_cols=212 Identities=10% Similarity=0.118 Sum_probs=148.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHh--hhccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDV--WLGTGLI 92 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~--~~g~~l~ 92 (228)
+.+++||+..+...+++.++.+|+++||+++++++|+.++|+++||+++++++.++ ..+.+.+.+..... ..+.++.
T Consensus 35 ~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~~ 114 (499)
T PLN03234 35 GLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRELG 114 (499)
T ss_pred CCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhhccCCCccc
Confidence 56788998876544567889999999999999999999999999999999999765 34554443322111 1233433
Q ss_pred -ccCCchhhhhhhhh-cCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCC
Q psy16355 93 -TSTGQKWHHRRKLL-TPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALK 169 (228)
Q Consensus 93 -~~~g~~w~~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~ 169 (228)
...++.|+++|+.+ .++|++++++.+.+.+.++++++++.|.+..+ ++++|+.+.+..+++|++++++||.+++..+
T Consensus 115 ~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~ 194 (499)
T PLN03234 115 FGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYNEYG 194 (499)
T ss_pred cCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 34478999999975 69999999999999999999999999976543 6789999999999999999999999887543
Q ss_pred CCCchHHHHHHHHHHHHHHH-hhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 170 NQNSAYTQAVGIVAEISMKR-FMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
.+..++.+.+.+........ ....++...++..+.+..++..++.+.+++++.++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 253 (499)
T PLN03234 195 TEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDE 253 (499)
T ss_pred hhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444444333221110 00111111111112233456778888888888877753
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.91 E-value=3.9e-24 Score=173.86 Aligned_cols=212 Identities=22% Similarity=0.344 Sum_probs=159.3
Q ss_pred hhhhhcccccccC-cHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCC-CCCchhhhhh----hHhhhc
Q psy16355 15 QTKRKLGLLNIKL-SVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTE-HIDKSTEYAL----LDVWLG 88 (228)
Q Consensus 15 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~-~~~k~~~~~~----~~~~~g 88 (228)
.+.+++|++..+. .+.++..+.+|+++|||||++++++.++++|+||+++++++.++. .+...+.... .....+
T Consensus 5 ~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (463)
T PF00067_consen 5 PPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRGPFGG 84 (463)
T ss_dssp SSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHHHHTT
T ss_pred CCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccccccc
Confidence 4678899999776 478999999999999999999999999999999999999998773 4443322111 224467
Q ss_pred ccccccCCchhhhhhhhhcCcCCHH-HHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 89 TGLITSTGQKWHHRRKLLTPAFHYN-ILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 89 ~~l~~~~g~~w~~~Rk~l~~~f~~~-~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
.++++.+|+.|+.+|++++++|+.. .+ .+.+.+.+.++.+++.|.+... ++.+|+.+.++.+++|+++.++||.+++
T Consensus 85 ~~l~~~~~~~~~~~R~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~~~~ 163 (463)
T PF00067_consen 85 KGLFFSDGERWRRQRRLLAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFGKDFG 163 (463)
T ss_dssp TSSTTSSHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred cccccccccccccccccccccccccccc-ccccccccccccccccccccccccceeeeecccccccccccccccccceee
Confidence 8899999999999999999999998 66 8999999999999999988765 3379999999999999999999999987
Q ss_pred CCCCC-CchHHHHHHHHHHHHHHHhhccccchhHHhh-cCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 167 ALKNQ-NSAYTQAVGIVAEISMKRFMLPWLHYDAIFK-RTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+.+ ..++.+.+..+..............++|+.. +.+..+...++.+.+.+++.+++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 226 (463)
T PF00067_consen 164 SLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFKRARDRLRKYIKEIIEE 226 (463)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55422 1345555555554332222112222223221 3344566666777788888777654
No 11
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.91 E-value=5.4e-23 Score=169.20 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=144.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhh-hhHhhhc--ccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYA-LLDVWLG--TGL 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~-~~~~~~g--~~l 91 (228)
+.+++|+++.+.. .++.++.+|+++||+|+++++|+.++|+++||++++++|.++ ..+.+++... ......| +++
T Consensus 38 ~~Pl~G~l~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~~~~~~~~~l 116 (504)
T PLN00110 38 GWPLLGALPLLGN-MPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATHLAYGAQDMV 116 (504)
T ss_pred CCCeeechhhcCC-chHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhhhccCCCcee
Confidence 3677888876653 578899999999999999999999999999999999999865 3444443222 1112233 456
Q ss_pred cccCCchhhhhhhhhcC-cCCHHHHHHhHHHHHHHHHHHHHHHhhhh-CCCceehHHhHHHHHHHHHHHHhcCcccCC-C
Q psy16355 92 ITSTGQKWHHRRKLLTP-AFHYNILETMLEPMQDTTDILVDRLSQEL-DNSGFDVFPIMKLTTLDIVCETTMGYDLGA-L 168 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~~-~f~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~-~ 168 (228)
++.+|+.|+++|+++++ .|++++++.+.+.+.++++.+++.+.+.. +|+++|+.+.+..+++|+|++++||.++.. .
T Consensus 117 ~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~~~~~~ 196 (504)
T PLN00110 117 FADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVILSRRVFETK 196 (504)
T ss_pred eCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCcccccC
Confidence 67779999999999985 79999999999999999999999987643 377899999999999999999999998722 2
Q ss_pred CCCCchHHHHHHHHHHHHHHHh-hccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 169 KNQNSAYTQAVGIVAEISMKRF-MLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..+.+++.+++...+....... ...++.+.|+. +.+..++..+..+.+.+++.++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~ 254 (504)
T PLN00110 197 GSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMD-IQGIERGMKHLHKKFDKLLTRMIE 254 (504)
T ss_pred chhHHHHHHHHHHHHHHhccccHHHHcchHhhhC-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 1122456666655544322111 01111122221 112234445556666666655553
No 12
>PLN02183 ferulate 5-hydroxylase
Probab=99.91 E-value=3.7e-23 Score=170.83 Aligned_cols=204 Identities=12% Similarity=0.124 Sum_probs=141.5
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhh---cccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWL---GTGL 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~---g~~l 91 (228)
+.+++|++..+.. ..+..+.+|+++||++|++++|+.++|+++||++++++|.++ ..+.+.+.......+. ++++
T Consensus 43 ~~Pl~G~l~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l 121 (516)
T PLN02183 43 GLPIIGNMLMMDQ-LTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYLTYDRADMA 121 (516)
T ss_pred CCCeeccHHhcCC-cchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhccccCCCceE
Confidence 5778898876643 356788999999999999999999999999999999999865 3343333221222222 3457
Q ss_pred cccCCchhhhhhhh-hcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCC
Q psy16355 92 ITSTGQKWHHRRKL-LTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKN 170 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~-l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~ 170 (228)
++.+|+.|+++|++ ++++|+.+.++.+.+. .++++.+++.|.+. .|+++|+.+.++++++|+++.++||.+.+..
T Consensus 122 ~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~vi~~~~fG~~~~~~-- 197 (516)
T PLN02183 122 FAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSSN-IGKPVNIGELIFTLTRNITYRAAFGSSSNEG-- 197 (516)
T ss_pred eCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhc-CCCcEeHHHHHHHHHHHHHHhHhhcCcccch--
Confidence 77889999999998 5899999999998886 46789999999652 2678999999999999999999999877542
Q ss_pred CCchHHHHHHHHHHHHHHH-hhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 171 QNSAYTQAVGIVAEISMKR-FMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
.+++.+.+..+....... ....+++..++. +.+..++..++.+.+.+++.++|+
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 252 (516)
T PLN02183 198 -QDEFIKILQEFSKLFGAFNVADFIPWLGWID-PQGLNKRLVKARKSLDGFIDDIID 252 (516)
T ss_pred -HHHHHHHHHHHHHHhCCccHHHhcchhHhcc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 244555555443322111 111111112210 122345566666667666666554
No 13
>KOG0159|consensus
Probab=99.91 E-value=3.8e-22 Score=157.39 Aligned_cols=200 Identities=18% Similarity=0.265 Sum_probs=164.8
Q ss_pred ccCcHHHHHHHHHHHHHcCCeeEEe-eCCcCeEEecChhHHHHHhhcCCCCCchh-h---hhhhHhhhc--ccccccCCc
Q psy16355 25 IKLSVEFFKFVSEQCNNYKGNFILW-LGPYPKVYFQTPDCTQAILSSTEHIDKST-E---YALLDVWLG--TGLITSTGQ 97 (228)
Q Consensus 25 ~~~~~~~~~~~~~~~~~yG~i~~~~-~~~~~~vvv~~p~~~k~il~~~~~~~k~~-~---~~~~~~~~g--~~l~~~~g~ 97 (228)
....++.++.....+++|||||+.. +|+...|.+.||++++.+|.+++.+.-++ . +....+.++ .|+++.+|+
T Consensus 69 ~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~~P~Rp~~~~~w~~~rd~~~~~~Gl~~~~G~ 148 (519)
T KOG0159|consen 69 AGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGKYPFRPLLIEPWVAYRDFRGGVCGLFLLEGP 148 (519)
T ss_pred hhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCCCCCcccccchhhhhHHhhccCCCcccCCCH
Confidence 5556788999999999999999999 88889999999999999998874333332 1 122344454 689999999
Q ss_pred hhhhhhhhhcCc-CCHHHHHHhHHHHHHHHHHHHHHHhhhhC----CCceehHHhHHHHHHHHHHHHhcCcccCCCCCCC
Q psy16355 98 KWHHRRKLLTPA-FHYNILETMLEPMQDTTDILVDRLSQELD----NSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQN 172 (228)
Q Consensus 98 ~w~~~Rk~l~~~-f~~~~l~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 172 (228)
+|++.|..+++. +++++++.+.+.++.+++++++++....+ ..+.|+.+.+.+++++.||.++||.+++.+....
T Consensus 149 ~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~~rlG~L~~~~ 228 (519)
T KOG0159|consen 149 EWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESICLVLLGTRLGLLGESP 228 (519)
T ss_pred HHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 999999999986 89999999999999999999999987664 2378999999999999999999999999876422
Q ss_pred ----chHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 173 ----SAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 173 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+++++..++.........| .+++++ +++.++++.++.+.+.++.+.+|+.
T Consensus 229 ~~~a~~fi~ai~~~F~~s~~l~~~p-~l~r~~--~t~~wk~~~~~~D~i~~~~~~~Id~ 284 (519)
T KOG0159|consen 229 PSEAQQFIDAIKKMFESSAQLMLMP-SLWRYF--PTKVWKDFVRAWDQIFDVGDKYIDN 284 (519)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHhcc-hHHHhC--CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888887776666665 444444 8889999999999999999888874
No 14
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.90 E-value=4.8e-23 Score=168.04 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=125.5
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHhhhc-cccc
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLG-TGLI 92 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~~~g-~~l~ 92 (228)
..+.+++|++.....++++.++.+++++||+++++++++.++|+++||+++++++.++....++..+.......| .+++
T Consensus 40 p~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~l~ 119 (463)
T PLN02196 40 TMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFPASKERMLGKQAIF 119 (463)
T ss_pred CCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCchHHHHHcCccccc
Confidence 346788999876555578899999999999999999999999999999999999977632234433333334456 4788
Q ss_pred ccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCccc
Q psy16355 93 TSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 93 ~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~ 165 (228)
+.+|+.|+++||++++.|++++++.+.+.+.++++++++.|.. +++|+.+.++.+++++++.++||.+.
T Consensus 120 ~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~i~~~~~~~~~~~~~----~~v~~~~~~~~~~~~v~~~~~fG~~~ 188 (463)
T PLN02196 120 FHQGDYHAKLRKLVLRAFMPDAIRNMVPDIESIAQESLNSWEG----TQINTYQEMKTYTFNVALLSIFGKDE 188 (463)
T ss_pred ccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHcCCC----CeEEeHHHHHHHHHHHHHHHHcCCCC
Confidence 8899999999999999999999999999999999999998853 57999999999999999999999875
No 15
>PLN02500 cytochrome P450 90B1
Probab=99.90 E-value=7e-23 Score=168.28 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=117.6
Q ss_pred hhhhccccccc----CcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhc-c
Q psy16355 16 TKRKLGLLNIK----LSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLG-T 89 (228)
Q Consensus 16 ~~~~~g~~~~~----~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g-~ 89 (228)
+.+++||+... ....++..+.+++++||+++++++|+.++|+++||++++++|.++ ..+.+.. ......++| .
T Consensus 45 ~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~-~~~~~~~~g~~ 123 (490)
T PLN02500 45 GWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSY-PRSIGGILGKW 123 (490)
T ss_pred CCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeC-chHHHHHhCcc
Confidence 35777776532 123567788999999999999999999999999999999999876 3332221 112223455 4
Q ss_pred cccccCCchhhhhhhhhcCcCCHHHHHH-hHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 90 GLITSTGQKWHHRRKLLTPAFHYNILET-MLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 90 ~l~~~~g~~w~~~Rk~l~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
++++.+|+.|+++|++++++|++.+++. +.+.+.+.+..+++.|.+ ++.+|+.+.++++++|++++++||.+.+
T Consensus 124 ~~~~~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vd~~~~~~~~~~~vi~~~~fg~~~~ 198 (490)
T PLN02500 124 SMLVLVGDMHRDMRSISLNFLSHARLRTHLLKEVERHTLLVLDSWKE---NSTFSAQDEAKKFTFNLMAKHIMSMDPG 198 (490)
T ss_pred cccccCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEehHHHHHHHHHHHHHHHhCCCCC
Confidence 7888899999999999999999999987 577888888888888865 5679999999999999999999998754
No 16
>PLN02966 cytochrome P450 83A1
Probab=99.90 E-value=7.6e-23 Score=168.48 Aligned_cols=154 Identities=13% Similarity=0.199 Sum_probs=124.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhh-hc-ccc-
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVW-LG-TGL- 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~-~g-~~l- 91 (228)
+.+++|++..+...+++..+.+|+++||+++++++|+.++|+++||+++++++.++ ..+.+.+.+...... .| .++
T Consensus 36 ~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (502)
T PLN02966 36 PLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEFISYGRRDMA 115 (502)
T ss_pred CCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccceeeccCcceee
Confidence 56789999877554678899999999999999999999999999999999999765 334433322211111 23 233
Q ss_pred cccCCchhhhhhhh-hcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCC
Q psy16355 92 ITSTGQKWHHRRKL-LTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALK 169 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~-l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~ 169 (228)
+...|+.|+++|++ ++++|++++++.+.+.+.++++++++.|.+.+. ++++|+.+.++.+++|+++.++||.+++..+
T Consensus 116 ~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~~~~~~ 195 (502)
T PLN02966 116 LNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKYNEDG 195 (502)
T ss_pred eCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHHhCCccCccc
Confidence 34569999999998 889999999999999999999999999976543 5689999999999999999999999887543
No 17
>PLN02655 ent-kaurene oxidase
Probab=99.90 E-value=2.5e-22 Score=164.00 Aligned_cols=154 Identities=10% Similarity=0.105 Sum_probs=123.2
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhccc--cc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGTG--LI 92 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~~--l~ 92 (228)
+.+++||++++...+++..+.+|+++||+++++++|+.++|+|+||++++++|.++ ..+.+++.......+.|++ ++
T Consensus 6 ~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~~~~~~ 85 (466)
T PLN02655 6 GLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRDKSMVA 85 (466)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcCCCcee
Confidence 36688999887655689999999999999999999999999999999999999875 4444443333333344433 55
Q ss_pred ccC-Cchhhhhhhhh-cCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC---CCceehHHhHHHHHHHHHHHHhcCcccCC
Q psy16355 93 TST-GQKWHHRRKLL-TPAFHYNILETMLEPMQDTTDILVDRLSQELD---NSGFDVFPIMKLTTLDIVCETTMGYDLGA 167 (228)
Q Consensus 93 ~~~-g~~w~~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~vi~~~~fG~~~~~ 167 (228)
+++ |+.|+++||.+ .+.|+...++.+.+.+.+.++.+++.+.+... ++++|+.+.++++++|+++.++||.+++.
T Consensus 86 ~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~ 165 (466)
T PLN02655 86 TSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGEDVES 165 (466)
T ss_pred eCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhcccccc
Confidence 554 89999999766 55688888899999999999998888865432 56899999999999999999999998876
Q ss_pred CC
Q psy16355 168 LK 169 (228)
Q Consensus 168 ~~ 169 (228)
..
T Consensus 166 ~~ 167 (466)
T PLN02655 166 VY 167 (466)
T ss_pred cc
Confidence 43
No 18
>PLN02971 tryptophan N-hydroxylase
Probab=99.90 E-value=2.5e-22 Score=166.67 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=118.9
Q ss_pred hhhhcccccccCcH-HHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhccc--
Q psy16355 16 TKRKLGLLNIKLSV-EFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGTG-- 90 (228)
Q Consensus 16 ~~~~~g~~~~~~~~-~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~~-- 90 (228)
+.+++||++.+... ..+..+.+|.++|| +|+++++|+.++|+|+||++++++|.++ ..+.+++.. .....+|.|
T Consensus 64 ~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~-~~~~~l~~~~~ 142 (543)
T PLN02971 64 GFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLT-YAQKILSNGYK 142 (543)
T ss_pred CCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcc-cchhhccCCCC
Confidence 57789998876432 34678899999999 8999999999999999999999999875 444444321 122334543
Q ss_pred --ccccCCchhhhhhhhhcC-cCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 91 --LITSTGQKWHHRRKLLTP-AFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 91 --l~~~~g~~w~~~Rk~l~~-~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
++..+|+.|+++||++++ .+++..++.+.+.++++++.+++.+.+..+ ++++|+.+.++++++|++++++||.++.
T Consensus 143 ~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 222 (543)
T PLN02971 143 TCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGTRTF 222 (543)
T ss_pred ceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhCCccc
Confidence 666779999999999964 566777778888899999999888866433 5689999999999999999999999874
No 19
>PLN00168 Cytochrome P450; Provisional
Probab=99.90 E-value=3.9e-22 Score=164.84 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=120.9
Q ss_pred hhhhcccccccC--cHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcc--c
Q psy16355 16 TKRKLGLLNIKL--SVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGT--G 90 (228)
Q Consensus 16 ~~~~~g~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~--~ 90 (228)
+.+++|++..+. ..+++..+.+|+++||+++++++|+.++|+++||+++++++.++ ..+.+.+... ...++|. +
T Consensus 42 ~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~-~~~~~~~~~~ 120 (519)
T PLN00168 42 AVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA-SSRLLGESDN 120 (519)
T ss_pred CCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc-chhhhccCCC
Confidence 467788886543 23578889999999999999999999999999999999999765 4444333221 1223342 3
Q ss_pred ccc--cCCchhhhhhh-hhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 91 LIT--STGQKWHHRRK-LLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 91 l~~--~~g~~w~~~Rk-~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
++. .+|+.|+++|| +++++|++++++.+.+.+.++++.+++.|.+..+ ++.+|+.+.++.++.++++.++||.+++
T Consensus 121 ~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~~ 200 (519)
T PLN00168 121 TITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERLD 200 (519)
T ss_pred ceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCcC
Confidence 444 56999999886 7899999999999999999999999999987543 4568999999999999999999999875
No 20
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.89 E-value=2.7e-22 Score=165.76 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=123.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhh-hHhhhc--ccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYAL-LDVWLG--TGL 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~-~~~~~g--~~l 91 (228)
+.+++||+..+.. .++..+.+|+++||+++++++|+.++|+++||+++++++.++ +.+.+.+.... ....+| .++
T Consensus 39 ~~pl~G~~~~~~~-~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~~~~ 117 (514)
T PLN03112 39 RWPIVGNLLQLGP-LPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLAYGCGDVA 117 (514)
T ss_pred CCCeeeeHHhcCC-chHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeeccCCCceE
Confidence 5788899887653 578889999999999999999999999999999999999765 45555443221 122234 335
Q ss_pred cccCCchhhhhhhhh-cCcCCHHHHHHhHHHHHHHHHHHHHHHhhhh-CCCceehHHhHHHHHHHHHHHHhcCcccCC
Q psy16355 92 ITSTGQKWHHRRKLL-TPAFHYNILETMLEPMQDTTDILVDRLSQEL-DNSGFDVFPIMKLTTLDIVCETTMGYDLGA 167 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~ 167 (228)
+..+|+.|+++||++ .++|++++++.+.+.+.++++.+++.+.+.. +++++|+.+.++.+++++++.++||.++..
T Consensus 118 ~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~ 195 (514)
T PLN03112 118 LAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQYFG 195 (514)
T ss_pred eCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCcccc
Confidence 566799999999995 5789999999999999999999999876533 367899999999999999999999998743
No 21
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.89 E-value=1.1e-21 Score=162.16 Aligned_cols=207 Identities=20% Similarity=0.312 Sum_probs=143.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHc---CCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhh-hhHhhhccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNY---KGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYA-LLDVWLGTG 90 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~y---G~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~-~~~~~~g~~ 90 (228)
+.+++|++..+.. .+..+.+|.++| |+++++++|+.++|+++||+++++|+.++ ..+.++..+. ....+.|.|
T Consensus 37 ~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~g~~ 114 (516)
T PLN03195 37 SWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEVLLGDG 114 (516)
T ss_pred CCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHHHhcCe
Confidence 3568888764322 134567788888 89999999999999999999999999765 4466665443 334456788
Q ss_pred ccccCCchhhhhhhhhcCcCCHHHHHHhHHHH-HHHHHHHHHHHhhhh-CCCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 91 LITSTGQKWHHRRKLLTPAFHYNILETMLEPM-QDTTDILVDRLSQEL-DNSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 91 l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
+++.+|+.|+++||+++++|+.++++.+.+.+ .+.++.+++.+.+.. .++++|+.+.++.+++|+|+.++||.+++..
T Consensus 115 l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~ 194 (516)
T PLN03195 115 IFNVDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFGVEIGTL 194 (516)
T ss_pred eeccCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 98889999999999999999999999999976 666777777776532 2668999999999999999999999998765
Q ss_pred CCC--CchHHHHHHHHHHHHHHHhhccccch-hHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 169 KNQ--NSAYTQAVGIVAEISMKRFMLPWLHY-DAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 169 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
+++ ...+.+.++............++... .++ +.+..++..++.+.+++++.++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 253 (516)
T PLN03195 195 SPSLPENPFAQAFDTANIIVTLRFIDPLWKLKKFL--NIGSEALLSKSIKVVDDFTYSVIR 253 (516)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHhcchhhHHHhc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 432 23566555544332222222221111 111 112233444556666666665554
No 22
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.88 E-value=1e-21 Score=161.98 Aligned_cols=154 Identities=16% Similarity=0.301 Sum_probs=122.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcc---cc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGT---GL 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~---~l 91 (228)
+.+++|++..+.....+..+.+|+++||+++++++|+.++|+++||+++++++.++ ..+.+.+.......+.|. ++
T Consensus 37 ~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~~~~g~~~~~l 116 (503)
T PLN02394 37 AVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMV 116 (503)
T ss_pred CCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHhHhccCCCcee
Confidence 35566777666543457889999999999999999999999999999999999765 334333222222333332 36
Q ss_pred cccCCchhhhhhhhhc-CcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC--CCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 92 ITSTGQKWHHRRKLLT-PAFHYNILETMLEPMQDTTDILVDRLSQELD--NSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
+..+|++|+++||.+. +.|++++++.+.+.++++++++++.|.+..+ ++.+|+.+.++.+++|+++.++||.+++..
T Consensus 117 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~~~~~~ 196 (503)
T PLN02394 117 FTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYRMMFDRRFESE 196 (503)
T ss_pred ecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHHHHhCCCcccc
Confidence 6677999999999986 9999999999999999999999999976532 446899999999999999999999998754
Q ss_pred C
Q psy16355 169 K 169 (228)
Q Consensus 169 ~ 169 (228)
+
T Consensus 197 ~ 197 (503)
T PLN02394 197 D 197 (503)
T ss_pred c
Confidence 3
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.88 E-value=8.5e-22 Score=160.36 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=116.7
Q ss_pred hhhhcccccccCc----HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcc-
Q psy16355 16 TKRKLGLLNIKLS----VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGT- 89 (228)
Q Consensus 16 ~~~~~g~~~~~~~----~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~- 89 (228)
+.+++|++..+.. .+++.++.+|.++||+|+++++|+.++|+++||++++++|.++ ..+... .......++|.
T Consensus 14 ~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~-~~~~~~~l~g~~ 92 (452)
T PLN03141 14 GWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPA-YPKSLTELMGKS 92 (452)
T ss_pred CCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeecc-CchhHHHHhCcc
Confidence 4688898876532 3578899999999999999999999999999999999999876 333222 11233345664
Q ss_pred cccccCCchhhhhhhhhcCcCCHHHHHHh-HHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCccc
Q psy16355 90 GLITSTGQKWHHRRKLLTPAFHYNILETM-LEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 90 ~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~ 165 (228)
++++.+|+.|+++|++++++|++.++... .+.+.+.++++++.|.+ ++.+|+.+.+..++++++++++||.+.
T Consensus 93 ~~~~~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vi~~~~~G~~~ 166 (452)
T PLN03141 93 SILLINGSLQRRVHGLIGAFLKSPHLKAQITRDMERYVSESLDSWRD---DPPVLVQDETKKIAFEVLVKALISLEP 166 (452)
T ss_pred cccccCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC---CCCEEhHHHHHHHHHHHHHHHHcCCCc
Confidence 68888999999999999999988877663 56667777777776654 678999999999999999999999765
No 24
>KOG0158|consensus
Probab=99.88 E-value=1.4e-21 Score=156.58 Aligned_cols=169 Identities=18% Similarity=0.276 Sum_probs=132.3
Q ss_pred hhhcccccccCcH-HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC--CCCCc-hhhh-hhhHhhhcccc
Q psy16355 17 KRKLGLLNIKLSV-EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST--EHIDK-STEY-ALLDVWLGTGL 91 (228)
Q Consensus 17 ~~~~g~~~~~~~~-~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~--~~~~k-~~~~-~~~~~~~g~~l 91 (228)
.|++||+..+... .......+...+|||++.++.+.+|.++|+||+.+|+|+.++ +++++ .+.+ ....++...++
T Consensus 39 ~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~~l~~~~L 118 (499)
T KOG0158|consen 39 LPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPEDPLSALNL 118 (499)
T ss_pred CCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCCcccccCc
Confidence 4789999865432 123333343344499999999999999999999999999886 44442 2221 11113334789
Q ss_pred cccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCCC
Q psy16355 92 ITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALKN 170 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~ 170 (228)
+.++|+.||++|..++|.|++.+++.+.+.++++++++++.+.+... +..+++.+.+.++|.|||+.++||.+.+...+
T Consensus 119 f~~~g~~WK~lR~~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG~~~~s~~d 198 (499)
T KOG0158|consen 119 FFLRGERWKRLRTKLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCAFGLDANSLRD 198 (499)
T ss_pred hhccCchHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999998653 35789999999999999999999999999876
Q ss_pred CCchHHHHHHHHHHH
Q psy16355 171 QNSAYTQAVGIVAEI 185 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (228)
...++..........
T Consensus 199 ~~~~F~~~~~~~~~~ 213 (499)
T KOG0158|consen 199 PKAEFRRMGRRAFFL 213 (499)
T ss_pred chHHHHHhhHHHHHH
Confidence 666777655554443
No 25
>PLN02774 brassinosteroid-6-oxidase
Probab=99.87 E-value=3e-21 Score=157.59 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=139.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhc-ccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLG-TGLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g-~~l~~ 93 (228)
+.+++|++..+.. ++..++.+++++||+++++++|+.++++++||+++++++.++ ..+.++...... .++| .++++
T Consensus 38 ~~P~~G~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~-~~lg~~~~~~ 115 (463)
T PLN02774 38 GWPLFGETTEFLK-QGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML-DILGTCNIAA 115 (463)
T ss_pred CCCchhhHHHHHH-hhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH-HHhCccchhh
Confidence 4678888776543 456788999999999999999999999999999999999765 333333222222 3456 47888
Q ss_pred cCCchhhhhhhhhcCcCCHHHHHH-hHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCC
Q psy16355 94 STGQKWHHRRKLLTPAFHYNILET-MLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQN 172 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 172 (228)
++|+.|+++|++++++|++..++. +.+.+.+.+++++++|.. ++++|+.+.++.+++++++.++||.+.+...
T Consensus 116 ~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 189 (463)
T PLN02774 116 VHGSTHRYMRGSLLSLISPTMIRDHLLPKIDEFMRSHLSGWDG---LKTIDIQEKTKEMALLSALKQIAGTLSKPIS--- 189 (463)
T ss_pred cCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEeeHHHHHHHHHHHHHHHcCCCChHHH---
Confidence 889999999999999999999986 789999999999998865 5679999999999999999999997643211
Q ss_pred chHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 173 SAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
.++.+.+..+. . ....++.++ +.+..++..++.+.+.+++.+.|+
T Consensus 190 ~~~~~~~~~~~---~----~~~~~~~~l--p~~~~~~~~~~~~~~~~~~~~~i~ 234 (463)
T PLN02774 190 EEFKTEFFKLV---L----GTLSLPIDL--PGTNYRSGVQARKNIVRMLRQLIQ 234 (463)
T ss_pred HHHHHHHHHHh---c----ccccCCcCC--CChhhhHHHHHHHHHHHHHHHHHH
Confidence 12222111111 0 111111112 323345666777777787777765
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.87 E-value=8.4e-21 Score=156.18 Aligned_cols=149 Identities=13% Similarity=0.213 Sum_probs=121.4
Q ss_pred hhhhhhcccccccC----cHHHHHHHHHHHHHcCC--eeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHhhh
Q psy16355 14 FQTKRKLGLLNIKL----SVEFFKFVSEQCNNYKG--NFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWL 87 (228)
Q Consensus 14 ~~~~~~~g~~~~~~----~~~~~~~~~~~~~~yG~--i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~~~ 87 (228)
-.+.+++|+++.+. ..+++.++.+++++||+ ++++++++.++|+++||+++++++.+++.+.+........ .+
T Consensus 47 p~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~~~f~~~~~~~~~~-~~ 125 (490)
T PLN02302 47 DLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDDDAFEPGWPESTVE-LI 125 (490)
T ss_pred CCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCCCccccCCchhHHH-Hh
Confidence 33568888887542 34678899999999997 7999999999999999999999998765444432222222 45
Q ss_pred cc-cccccCCchhhhhhhhhcCcCC-HHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCccc
Q psy16355 88 GT-GLITSTGQKWHHRRKLLTPAFH-YNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 88 g~-~l~~~~g~~w~~~Rk~l~~~f~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~ 165 (228)
|. +++..+|+.|+++|+++++.|+ +++++.+.+.+.+.++++++.|.. ++.+|+.+.++.++++++++++||.+.
T Consensus 126 g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~---~~~v~~~~~~~~~~~~vi~~~~~G~~~ 202 (490)
T PLN02302 126 GRKSFVGITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSK---MGEIEFLTELRKLTFKIIMYIFLSSES 202 (490)
T ss_pred ccccccccCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCEehHHHHHHHHHHHHHHHHcCCCC
Confidence 64 4566789999999999999994 788999999999999999999975 457999999999999999999999876
Q ss_pred C
Q psy16355 166 G 166 (228)
Q Consensus 166 ~ 166 (228)
+
T Consensus 203 ~ 203 (490)
T PLN02302 203 E 203 (490)
T ss_pred h
Confidence 4
No 27
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.86 E-value=6.4e-20 Score=150.78 Aligned_cols=207 Identities=14% Similarity=0.232 Sum_probs=146.1
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhh-hhhHhhhccccccc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEY-ALLDVWLGTGLITS 94 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~-~~~~~~~g~~l~~~ 94 (228)
++.|+....-. +.+.....+.++++ .+++++..+. ++++||+++++++.++ ..+.|+..+ .....+.|+|++++
T Consensus 50 ~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~~ 126 (502)
T PLN02426 50 YLTASWAKDFD-NLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGIFNV 126 (502)
T ss_pred CccHHHHHhcc-cHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCceeec
Confidence 45555543222 34556666788887 5777765554 8999999999999875 557776654 34455678999999
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhH--HHHHHHHHHHHHHHhhhhC---CCceehHHhHHHHHHHHHHHHhcCcccCCCC
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETML--EPMQDTTDILVDRLSQELD---NSGFDVFPIMKLTTLDIVCETTMGYDLGALK 169 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~--~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~ 169 (228)
+|+.|+++||+++++|+.++++.+. +.+.+.++++++.+.+.++ ++++|+.+.++++|+|+|+.++||.+++..+
T Consensus 127 ~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~l~ 206 (502)
T PLN02426 127 DGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDPGCLE 206 (502)
T ss_pred CcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence 9999999999999999999998864 6777888888888876442 3579999999999999999999999987654
Q ss_pred C--CCchHHHHHHHHHHHHHHHhhccccchhHHh--hcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 170 N--QNSAYTQAVGIVAEISMKRFMLPWLHYDAIF--KRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 170 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
. +..++.++++.+..........+.++..++. .+.+..++..++.+.+++++.++|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~ 268 (502)
T PLN02426 207 LSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQ 268 (502)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3 2355777666655433322222211111111 12344567778888888888887753
No 28
>PLN03018 homomethionine N-hydroxylase
Probab=99.85 E-value=9.3e-20 Score=150.72 Aligned_cols=151 Identities=11% Similarity=0.146 Sum_probs=112.5
Q ss_pred hhhhcccccccCcHHH-HHHHHHHHHHc-CCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcc---
Q psy16355 16 TKRKLGLLNIKLSVEF-FKFVSEQCNNY-KGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGT--- 89 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~-~~~~~~~~~~y-G~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~--- 89 (228)
+.+++||++++....+ ..++.++.++| |+|+++++|+.++|+|+||++++++|.++ ..+.+++....... ++.
T Consensus 47 ~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~-l~~~~~ 125 (534)
T PLN03018 47 GWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMET-IGDNYK 125 (534)
T ss_pred CCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhh-hccCCC
Confidence 4788999987632112 13455556665 79999999999999999999999999865 43544443222222 332
Q ss_pred cccccC-CchhhhhhhhhcCcCCH-HHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 90 GLITST-GQKWHHRRKLLTPAFHY-NILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 90 ~l~~~~-g~~w~~~Rk~l~~~f~~-~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
++++++ |+.|+++|+++++.|.. ...+.+.+..+.+++++++.+.+..+ ++++|+.+.++++++|++++++||.+++
T Consensus 126 ~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 205 (534)
T PLN03018 126 SMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRRHV 205 (534)
T ss_pred ceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCccc
Confidence 477665 99999999999998654 44455556666788999999876433 5679999999999999999999999985
Q ss_pred C
Q psy16355 167 A 167 (228)
Q Consensus 167 ~ 167 (228)
.
T Consensus 206 ~ 206 (534)
T PLN03018 206 T 206 (534)
T ss_pred c
Confidence 4
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.83 E-value=1.6e-19 Score=147.40 Aligned_cols=197 Identities=16% Similarity=0.144 Sum_probs=131.7
Q ss_pred hhhhhhhhcccccccC----cHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhh
Q psy16355 12 HNFQTKRKLGLLNIKL----SVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVW 86 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~ 86 (228)
..-.+.+++||++.+. ..+++.++.+|+++||+++++++++.++|+++||+++++++.++ ..+.++.. .....+
T Consensus 33 pgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~-~~~~~~ 111 (472)
T PLN02987 33 PGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYP-GSISNL 111 (472)
T ss_pred CCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCc-HHHHHH
Confidence 3444578899887652 23578889999999999999999999999999999999999876 44434322 222344
Q ss_pred hc-ccccccCCchhhhhhhhhcCcCCHHHHHHhHH-HHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcc
Q psy16355 87 LG-TGLITSTGQKWHHRRKLLTPAFHYNILETMLE-PMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYD 164 (228)
Q Consensus 87 ~g-~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~ 164 (228)
+| +|+++++|+.|+++|+++.+.++.+.++.+.. .+.+.++..++.|. +++++.+.+++++++++++++||.+
T Consensus 112 lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~t~~vi~~~~fg~~ 186 (472)
T PLN02987 112 LGKHSLLLMKGNLHKKMHSLTMSFANSSIIKDHLLLDIDRLIRFNLDSWS-----SRVLLMEEAKKITFELTVKQLMSFD 186 (472)
T ss_pred hCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhc-----cceehHHHHHHHHHHHHHHHHcCCC
Confidence 56 58999999999999999876455555555432 23334444444442 4689999999999999999999976
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 165 LGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
.+... +.+.+.+...... ....++ ++ +.+..++..++++++.+++.++|+
T Consensus 187 ~~~~~---~~~~~~~~~~~~~---~~~~~~---p~---l~~~~~~~~~~~~~~~~~~~~~i~ 236 (472)
T PLN02987 187 PGEWT---ESLRKEYVLVIEG---FFSVPL---PL---FSTTYRRAIQARTKVAEALTLVVM 236 (472)
T ss_pred ChHHH---HHHHHHHHHHHhh---hhcCCC---cC---CCchHHHHHHHHHHHHHHHHHHHH
Confidence 53221 2222222222211 111111 11 223456677788888888877775
No 30
>PLN02648 allene oxide synthase
Probab=99.78 E-value=2.4e-18 Score=140.12 Aligned_cols=149 Identities=12% Similarity=0.167 Sum_probs=119.9
Q ss_pred hhhhccccccc----CcHHHHHHHHHHHHHcCC-eeEEeeCCcCe-------EEecChhHHHHHhhc----C-CCCCchh
Q psy16355 16 TKRKLGLLNIK----LSVEFFKFVSEQCNNYKG-NFILWLGPYPK-------VYFQTPDCTQAILSS----T-EHIDKST 78 (228)
Q Consensus 16 ~~~~~g~~~~~----~~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------vvv~~p~~~k~il~~----~-~~~~k~~ 78 (228)
+.+++|....+ ...++..++.+..++||+ ||+++++|.|+ |+++||++++.+|.+ + ..+.. .
T Consensus 24 g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~~~~~~-~ 102 (480)
T PLN02648 24 GLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKRDVFTG-T 102 (480)
T ss_pred CCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcccccccee-e
Confidence 46788888642 223557899999999999 99999998766 999999999999975 2 22333 2
Q ss_pred hhhhhHhhhc-c---cccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhh-hCCCceehHHhHHHHHH
Q psy16355 79 EYALLDVWLG-T---GLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQE-LDNSGFDVFPIMKLTTL 153 (228)
Q Consensus 79 ~~~~~~~~~g-~---~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 153 (228)
+..... ++| + +++..+|+.|+++|+++.++|+ ..++.+.+.+.+.+++++++|... .+++++|+.+.++++|+
T Consensus 103 ~~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~~~~~lt~ 180 (480)
T PLN02648 103 YMPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGKAEFNDPLDQMAF 180 (480)
T ss_pred eccCcc-ccCCceeeeecCCCCchHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccccchHHHHHH
Confidence 222233 677 4 6677789999999999999999 477889999999999999999654 23567999999999999
Q ss_pred HHHHHHhcCcccCC
Q psy16355 154 DIVCETTMGYDLGA 167 (228)
Q Consensus 154 ~vi~~~~fG~~~~~ 167 (228)
|++++++||.+.+.
T Consensus 181 ~vi~~~lfG~~~~~ 194 (480)
T PLN02648 181 NFLCKALTGKDPSE 194 (480)
T ss_pred HHHHHHHcCCCcch
Confidence 99999999987655
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.48 E-value=4.2e-13 Score=107.95 Aligned_cols=177 Identities=20% Similarity=0.186 Sum_probs=127.8
Q ss_pred HHHHHHHHHHcCCeeEEeeCCcC--eEEecChhHHHHHhhcCCCCCchhh----hhhhHhhhccc-ccccCCchhhhhhh
Q psy16355 32 FKFVSEQCNNYKGNFILWLGPYP--KVYFQTPDCTQAILSSTEHIDKSTE----YALLDVWLGTG-LITSTGQKWHHRRK 104 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~~~--~vvv~~p~~~k~il~~~~~~~k~~~----~~~~~~~~g~~-l~~~~g~~w~~~Rk 104 (228)
......+.+.||.+..++..+.. .+++++++++++++.+..+..+... .....+.+|.+ +++.+|+.|+++||
T Consensus 25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~Rk 104 (411)
T COG2124 25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPRFFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLRK 104 (411)
T ss_pred hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcccccccccccccccchhhhccccceeecCCHHHHHHHH
Confidence 34556677889988888765543 8999999999999988642332221 11234556765 88899999999999
Q ss_pred hhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHHHHH
Q psy16355 105 LLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAE 184 (228)
Q Consensus 105 ~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
+++++|+++.++.+.+.+.+.++++++.+ .. ++..++.+.+..+++++|+ .+||...++. ..+.........
T Consensus 105 l~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~----~~~~~~~~~~~~ 176 (411)
T COG2124 105 LLAPAFTPRALRGYRPLIREIADRLLDDL-WQ--GGADLVLDFAAELTLRVIA-ELLGVPLEDR----PQLLRWSDALLL 176 (411)
T ss_pred HhccccCHHHHHHHHHHHHHHHHHHHHhc-cc--CCchhHHHHhhhhhHHHHH-HHhCCCHHHH----HHHHHHHHHHHh
Confidence 99999999999999999999999999999 42 3677899999999999999 9999888543 222222222211
Q ss_pred HHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 185 ISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
. ..+ ... +.....+..++.+.+.+++..+|+.
T Consensus 177 ~-----~~~----~~~--~~~~~~~~~~a~~~~~~~~~~li~~ 208 (411)
T COG2124 177 R-----LDP----DLG--PEEPWRRARAARRELDAYLRALIAE 208 (411)
T ss_pred c-----cCc----ccC--CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 001 011 2223566778888888888888764
No 32
>KOG0684|consensus
Probab=99.39 E-value=9.1e-12 Score=97.35 Aligned_cols=203 Identities=12% Similarity=0.081 Sum_probs=146.7
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhh-hhhHhhhccc
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEY-ALLDVWLGTG 90 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~-~~~~~~~g~~ 90 (228)
-+...+.+|++..+.. +|.+++.+..+|||+||.+.++|+.+-++.+|+...-++... ...+-...| ....+.+|.|
T Consensus 36 i~gwiP~lG~a~~fgk-~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg~~ 114 (486)
T KOG0684|consen 36 IKGWIPWLGSALAFGK-DPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFGKG 114 (486)
T ss_pred cccCcchhhHHHHhcc-CHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcCCC
Confidence 3444578999998887 899999999999999999999999999999999999999776 455555555 4566778988
Q ss_pred ccc-cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHH-HhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 91 LIT-STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDR-LSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 91 l~~-~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
+.. .++.....+.+++..++...+++.+.+.+.++..+.++. |.+ .+..-.+....+.+.+.+--.+.+|+.....
T Consensus 115 v~~d~~~~~~~e~~~~~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~--s~~~d~l~~~~~~ii~tAs~~ll~~e~r~~~ 192 (486)
T KOG0684|consen 115 VVYDVPNHVMMEQKKFFKSALGGVALKSLVELMLEELHAYFETSLGE--SGETDGLYTFCRLIIFTASRLLLGGEVRDQL 192 (486)
T ss_pred ccccCCCchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhccccc--ccchhHhhhhhHHHhhhhHHHhhhhhhhhhh
Confidence 775 568888899999999999999999999999999998887 444 2444556667777777776677777666554
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 169 KNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
+ ++....+.++........ +.++.++ |.+..++..++.+.+.+....+|.
T Consensus 193 d---~~~a~l~~dLd~~F~~~d---~~FP~~L--P~~~~r~~~ra~~~i~k~f~~~i~ 242 (486)
T KOG0684|consen 193 D---ADVAKLYHDLDQGFQPFD---FLFPYNL--PIPLLRRRDRARKKISKIFSKIIL 242 (486)
T ss_pred c---chHHHHHHHHhccccchH---hhcccCC--CcchhhhHHHHHHHHHHHHHHHHH
Confidence 3 333333333322111110 0111144 566667777888887777766553
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=69.80 E-value=11 Score=25.82 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.8
Q ss_pred hhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 12 HNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
....+..++++|..... ...+.++.++||+|..+.+. +.-+|-..+++.++.++..
T Consensus 31 ~~~~~~lfVgnL~~~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTD---DASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred cCCCCEEEEeCCCCCCC---HHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34455677888886555 55677888899998777653 2357788999999999853
No 34
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=67.93 E-value=21 Score=23.87 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC
Q psy16355 28 SVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 28 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~ 71 (228)
+.+.-..+.+|.++||.+--. .+...+...|++.++++....
T Consensus 73 P~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~~ 114 (129)
T PF13625_consen 73 PQNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLADP 114 (129)
T ss_pred CHHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhCh
Confidence 346777899999999977654 345577889999999998664
No 35
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=67.92 E-value=5.9 Score=24.81 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=45.8
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC--CCCCchhhhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST--EHIDKSTEYA 81 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~--~~~~k~~~~~ 81 (228)
.-+|+++.-+..-..+..++..-+.++.+.+|+-+...|.-++|+.....|... +.|..+.+|.
T Consensus 22 ~HvGSvhApd~e~Al~~Ar~~y~RR~e~vsiWVVp~~~I~as~p~ek~~~f~p~~dK~YRh~tfy~ 87 (95)
T PRK13781 22 KHVGSLHAADAEMALRNARDVYTRRNEGVSIWVVPSSAITASDPDEKGPFFEPAEDKVYRHPTFYT 87 (95)
T ss_pred ceEeeeeCCCHHHHHHHHHHHhccccCCcEEEEeeHHHccccChhhhhhccCcccCCcccCccccc
Confidence 346777777776666667777777788999999999899999999766666432 4444444443
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=64.96 E-value=20 Score=19.50 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=24.2
Q ss_pred HHHHHHcCCeeEEeeCCc----CeEEecChhHHHHHhh
Q psy16355 36 SEQCNNYKGNFILWLGPY----PKVYFQTPDCTQAILS 69 (228)
Q Consensus 36 ~~~~~~yG~i~~~~~~~~----~~vvv~~p~~~k~il~ 69 (228)
.+..++||+|..+.+... -.|-..+++.++.+..
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 567889999988886543 3555678888888775
No 37
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=64.77 E-value=27 Score=21.68 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=41.8
Q ss_pred Cchhhhhhhhhc---CcCCHHHHHHhH-----HHHHHHHHHHHHHHhhhhC--CCceehHHhHHHHHHHHHHHHhcC
Q psy16355 96 GQKWHHRRKLLT---PAFHYNILETML-----EPMQDTTDILVDRLSQELD--NSGFDVFPIMKLTTLDIVCETTMG 162 (228)
Q Consensus 96 g~~w~~~Rk~l~---~~f~~~~l~~~~-----~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~vi~~~~fG 162 (228)
|..||+.=|-+. .+++...+.... .-+.+.+-+++.+|.+... ...-.+...+..+-++.+..-++|
T Consensus 13 Gr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 13 GKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred hHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHhc
Confidence 789999766665 458877776643 2277889999999988542 112234445555555555544443
No 38
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=61.23 E-value=25 Score=19.76 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=33.3
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC--------cCeEEecChhHHHHHhhc
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP--------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~~ 70 (228)
+++|++.--. ...+.++.++||++..+.+.. .-.|...+++.++.++..
T Consensus 2 ~v~nlp~~~t---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 2 YVGNLPPDVT---EEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp EEESETTTSS---HHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCCCcCC---HHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 3566665444 456678888999986655432 256777889998888853
No 39
>smart00362 RRM_2 RNA recognition motif.
Probab=60.99 E-value=27 Score=19.37 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCeeEEeeCC-------cCeEEecChhHHHHHhh
Q psy16355 32 FKFVSEQCNNYKGNFILWLGP-------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~-------~~~vvv~~p~~~k~il~ 69 (228)
...+.++.++||++..+.+.. .-.+-..+++.++.++.
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHH
Confidence 445667778999887665432 23566688888888764
No 40
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=56.98 E-value=48 Score=22.04 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=25.4
Q ss_pred hHhhhcccccccCCchhhh---hhhhhcCcCCHHHHHHhHHHHH
Q psy16355 83 LDVWLGTGLITSTGQKWHH---RRKLLTPAFHYNILETMLEPMQ 123 (228)
Q Consensus 83 ~~~~~g~~l~~~~g~~w~~---~Rk~l~~~f~~~~l~~~~~~~~ 123 (228)
++..+..|++ .+++.|.. .|...+..+...........+.
T Consensus 66 ~r~A~~~glI-~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 66 FREAFKAGLI-DDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP 108 (124)
T ss_dssp HHHHHHTTSS-SHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred HHHHHHcCCC-CCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 3444556777 66888976 5667778888776555444333
No 41
>KOG3793|consensus
Probab=56.92 E-value=38 Score=25.83 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred CchhhhhhhhhcCcCCHHHHHHhHHH-HHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCch
Q psy16355 96 GQKWHHRRKLLTPAFHYNILETMLEP-MQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSA 174 (228)
Q Consensus 96 g~~w~~~Rk~l~~~f~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~ 174 (228)
.+.|-..+.+.+..++-+..+.++.. ....+..+++-+++.. ...+-.+-+.-+++|.+...+.-...+.+. ..
T Consensus 176 P~lHLD~K~M~~~l~a~RH~~WFee~A~~s~~~~lir~LKDlr--~r~~~F~PLs~W~ldll~h~avmNnp~RQ~---l~ 250 (362)
T KOG3793|consen 176 PELHLDIKVMQSALAAIRHARWFEENASQSTVKVLIRLLKDLR--IRFPGFEPLTPWILDLLGHYAVMNNPTRQP---LA 250 (362)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH--hhcCCCCCchHHHHHHHHHHHHHcCCcccc---ch
Confidence 35666666677777777777777663 3444666666666542 234445567778888888877665554432 45
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy16355 175 YTQAVGIVAEISMKRFML 192 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (228)
+..+++.++..+....+.
T Consensus 251 ln~Afrr~~qilaAG~Fl 268 (362)
T KOG3793|consen 251 LNVAYRRCLQILAAGLFL 268 (362)
T ss_pred hhHHHHHHHHHHHhcccC
Confidence 566667777666555443
No 42
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=53.82 E-value=32 Score=27.27 Aligned_cols=50 Identities=8% Similarity=-0.173 Sum_probs=36.7
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCc---------CeEEecChhHHHHHhhc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPY---------PKVYFQTPDCTQAILSS 70 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~---------~~vvv~~p~~~k~il~~ 70 (228)
.++|||..-.. ...+.++..+||+|.++++... -+|...+++.+..++..
T Consensus 272 lfV~NL~~~~~---e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 272 IFVYNLSPDTD---ETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred EEEeCCCCCCC---HHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 67888886544 4556778899999988876433 37788888887777643
No 43
>TIGR02157 PA_CoA_Oxy2 phenylacetate-CoA oxygenase, PaaH subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=50.75 E-value=16 Score=22.70 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=43.1
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC--CCCCchhhhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST--EHIDKSTEYA 81 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~--~~~~k~~~~~ 81 (228)
.-+|+++.-+..-..+...+..-+-++-+.+|+-+...|.-++|+.....|... +.|..+.+|.
T Consensus 17 ~HvGSvhA~d~e~Al~~Ard~y~RR~e~vsiWVVp~~~I~as~p~ek~~~f~p~~dK~YRh~t~Y~ 82 (90)
T TIGR02157 17 QHVGSLHAPDEEMALMMARDNYTRREEGVSIWVVKASHIVASTPDEREEFFDPAEDKVYRHPTFYG 82 (90)
T ss_pred ceEeeeeCCCHHHHHHHHHHHhccccCCcEEEEeeHHHhhcCChhhhhhccCcccCCcccCccccC
Confidence 346777777765555555555555568899999899889999999766667432 4444444444
No 44
>smart00360 RRM RNA recognition motif.
Probab=49.39 E-value=44 Score=18.31 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 32 FKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
...+.++.++||++..+.+.. .-.|...+++.++.++.
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~ 56 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALE 56 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 345667778999987776533 23466677887777764
No 45
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=46.72 E-value=30 Score=24.30 Aligned_cols=36 Identities=11% Similarity=-0.075 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHcC-CeeEEeeCCc----CeEEecChhH
Q psy16355 28 SVEFFKFVSEQCNNYK-GNFILWLGPY----PKVYFQTPDC 63 (228)
Q Consensus 28 ~~~~~~~~~~~~~~yG-~i~~~~~~~~----~~vvv~~p~~ 63 (228)
.+...+...++.+++| |++.+.+++. --+|++||--
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvq 193 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQ 193 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchH
Confidence 3577889999999999 9999998765 3467788743
No 46
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=45.65 E-value=40 Score=19.16 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=31.7
Q ss_pred cccccccCcHHHHHHHHHHHHHcCCeeEEeeCC--------cCeEEecChhHHHHHhhc
Q psy16355 20 LGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP--------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~~ 70 (228)
+++++.-.. ...+.++...||+|-.+.+.. .-+|-..+++.++.++..
T Consensus 3 i~nlp~~~~---~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 3 ISNLPPSTT---EEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp EESSTTT-----HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EeCCCCCCC---HHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH
Confidence 455554333 356778888899886666432 246777899999998854
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=41.65 E-value=70 Score=25.66 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=36.5
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
....++++|..-.. .+.+.++.++||+|..+++. +.-+|-..+++.++.++..
T Consensus 107 ~~~LfVgnLp~~~t---e~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 107 GTNLIVNYLPQDMT---DRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CcEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHH
Confidence 34466777774444 44567777889999777652 2357778899999888853
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=38.99 E-value=1e+02 Score=23.59 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=36.9
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~vvv~~p~~~k~il~~ 70 (228)
..++||+..-.. ...+.++...||+|..+.+. +.-+|-..+++.++..+.-
T Consensus 6 tVfVgNLs~~tT---E~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllL 62 (260)
T PLN03120 6 TVKVSNVSLKAT---ERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLL 62 (260)
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHh
Confidence 346788875544 44566777889999888762 3467888899999988853
No 49
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=37.95 E-value=93 Score=24.99 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=36.7
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
..++++|..-.. .+.+.++.++||.|..+.+.. .-+|-..+.+.+++++..
T Consensus 195 ~lfV~nLp~~vt---ee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 195 NLYVTNLPRTIT---DDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eeEEeCCCCccc---HHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 467777775444 456778889999987776542 237888898888888853
No 50
>KOG0107|consensus
Probab=37.66 E-value=63 Score=23.07 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=35.6
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il 68 (228)
+...+-.+|||..-..+ ..+.....+||++..+|+. +.-+|=+-||..+.++.
T Consensus 8 ~~~~kVYVGnL~~~a~k---~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATK---RELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred CCCceEEeccCCCCcch---HHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 34556678888865553 2346667889999999864 34466677776666654
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=37.15 E-value=75 Score=17.51 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCeeEEeeCCc--------CeEEecChhHHHHHhhc
Q psy16355 32 FKFVSEQCNNYKGNFILWLGPY--------PKVYFQTPDCTQAILSS 70 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~~--------~~vvv~~p~~~k~il~~ 70 (228)
...+.++.++||++..+.+... -.|-..+++.++.++..
T Consensus 13 ~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~ 59 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEA 59 (74)
T ss_pred HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4566777888899877765432 35556888888888754
No 52
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=34.29 E-value=49 Score=18.33 Aligned_cols=17 Identities=12% Similarity=-0.212 Sum_probs=14.6
Q ss_pred cCCeeEEeeCCcCeEEe
Q psy16355 42 YKGNFILWLGPYPKVYF 58 (228)
Q Consensus 42 yG~i~~~~~~~~~~vvv 58 (228)
-|++++++-|+..|.|.
T Consensus 3 ~GDvV~LKSGGp~MTV~ 19 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVT 19 (53)
T ss_pred CCCEEEEccCCCCeEEE
Confidence 38999999998888887
No 53
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.06 E-value=10 Score=20.88 Aligned_cols=8 Identities=63% Similarity=1.124 Sum_probs=3.4
Q ss_pred CCcccccc
Q psy16355 1 MSEGISKG 8 (228)
Q Consensus 1 ~~~~~~~~ 8 (228)
|++|+|.|
T Consensus 24 MaeGmSsG 31 (60)
T COG3140 24 MAEGMSSG 31 (60)
T ss_pred HHccccch
Confidence 34444443
No 54
>KOG0109|consensus
Probab=32.10 E-value=86 Score=24.40 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=34.1
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~ 69 (228)
+.++||+..-.. ...+..+.++||.|.--.+- +--+|.+-|-.+.+++..
T Consensus 4 KLFIGNLp~~~~---~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedair 54 (346)
T KOG0109|consen 4 KLFIGNLPREAT---EQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIR 54 (346)
T ss_pred chhccCCCcccc---hHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHh
Confidence 568899987655 55677789999977654432 335777777666666654
No 55
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=30.16 E-value=1.1e+02 Score=17.43 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHh
Q psy16355 29 VEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il 68 (228)
.+....+.++.++|| +.+++-....-.+.-.+++.+.+++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~ 63 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIF 63 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHH
Confidence 356888999999999 6777744333222224556666654
No 56
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=29.91 E-value=2.4e+02 Score=21.07 Aligned_cols=108 Identities=15% Similarity=0.088 Sum_probs=60.9
Q ss_pred cCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEe---cChhHHHHHhhcC--CCCCchhhhhhhHhhhcccccccCCchhh
Q psy16355 26 KLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYF---QTPDCTQAILSST--EHIDKSTEYALLDVWLGTGLITSTGQKWH 100 (228)
Q Consensus 26 ~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv---~~p~~~k~il~~~--~~~~k~~~~~~~~~~~g~~l~~~~g~~w~ 100 (228)
++.++..+.+.+++.++= +..++++ +|-+.+++.+.-. ++.-||..++.+..- =+.|+
T Consensus 56 mPd~~Gi~lL~~ir~~~~--------~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~a---------L~~y~ 118 (224)
T COG4565 56 MPDGNGIELLPELRSQHY--------PVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQA---------LTRYR 118 (224)
T ss_pred cCCCccHHHHHHHHhcCC--------CCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHH---------HHHHH
Confidence 455667788888887763 2224444 4567777777665 566666544443321 15677
Q ss_pred hhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhc
Q psy16355 101 HRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTM 161 (228)
Q Consensus 101 ~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~f 161 (228)
+.|+.+.. ....-++++++++..-.+ +..+.++..-+...|++-++..+=
T Consensus 119 ~~r~~l~~---------~~~~sQ~~lD~l~~~~~k--~~~~~~LPkGi~~~Tl~~i~~~~~ 168 (224)
T COG4565 119 QKRHALES---------HQQLSQKELDQLFNIQSK--EQPPDDLPKGLDELTLQKVREALK 168 (224)
T ss_pred HHHHHHhh---------hcccCHHHHHHHHhcccc--ccCcccCCCCcCHHHHHHHHHHHh
Confidence 77765533 122222333333332212 134566777788888888888754
No 57
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=29.46 E-value=1.4e+02 Score=18.27 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCe---eEEeeCCcCeEEecCh-----hHHHHHhh
Q psy16355 33 KFVSEQCNNYKGN---FILWLGPYPKVYFQTP-----DCTQAILS 69 (228)
Q Consensus 33 ~~~~~~~~~yG~i---~~~~~~~~~~vvv~~p-----~~~k~il~ 69 (228)
+...+++.+|.++ ++++.+...-+-|.+. +.+.++++
T Consensus 24 EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLq 68 (81)
T PRK10597 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQ 68 (81)
T ss_pred HHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHH
Confidence 4456778889987 8999888878887544 44444443
No 58
>KOG0114|consensus
Probab=29.09 E-value=1.6e+02 Score=19.08 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=32.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCc------CeEEecChhHHHHHh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPY------PKVYFQTPDCTQAIL 68 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~------~~vvv~~p~~~k~il 68 (228)
...+-|++.--. .+.+.++.-+||+|..+++|.. -+||-.|-..+|...
T Consensus 20 iLyirNLp~~IT---seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~ 74 (124)
T KOG0114|consen 20 ILYIRNLPFKIT---SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKAC 74 (124)
T ss_pred eEEEecCCcccc---HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHH
Confidence 345555654333 4566788899999999998853 355556666666554
No 59
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=27.61 E-value=1.2e+02 Score=21.22 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCeeEEeeCC
Q psy16355 31 FFKFVSEQCNNYKGNFILWLGP 52 (228)
Q Consensus 31 ~~~~~~~~~~~yG~i~~~~~~~ 52 (228)
-.+.+.++.++||||..-+--+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P 118 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP 118 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC
Confidence 4567889999999987665333
No 60
>PHA01327 hypothetical protein
Probab=27.39 E-value=24 Score=18.21 Aligned_cols=17 Identities=24% Similarity=0.747 Sum_probs=12.8
Q ss_pred ccccccCCchhhhhhhh
Q psy16355 89 TGLITSTGQKWHHRRKL 105 (228)
Q Consensus 89 ~~l~~~~g~~w~~~Rk~ 105 (228)
++++...|++|...|.-
T Consensus 12 ~~vinehge~wqer~dr 28 (49)
T PHA01327 12 NNVINEHGEEWQERKDR 28 (49)
T ss_pred chHHHhhHHHHHHHHHH
Confidence 46777779999987753
No 61
>KOG0149|consensus
Probab=26.80 E-value=1.3e+02 Score=22.63 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=38.7
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhcC
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~~ 71 (228)
.++.++|.|..-.+ -+.+.+..++||+|+-..+- |--+|-..|++++.....+.
T Consensus 12 ~TKifVggL~w~T~---~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETH---KETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccc---hHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 45667777776555 45677888999987644321 23578889999999998775
No 62
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=24.48 E-value=1.6e+02 Score=23.31 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=35.5
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
..++|+|+.--. ...+.++..+||+|..+++- +.-+|-..+++.++.++.
T Consensus 5 ~l~V~nLp~~~~---e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~ 63 (352)
T TIGR01661 5 NLIVNYLPQTMT---QEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVN 63 (352)
T ss_pred EEEEeCCCCCCC---HHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHh
Confidence 356788875444 34567788889999877652 234777889988888874
No 63
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=24.39 E-value=1.3e+02 Score=17.38 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCeeEEeeCCcCeEEecC
Q psy16355 32 FKFVSEQCNNYKGNFILWLGPYPKVYFQT 60 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~~~~vvv~~ 60 (228)
+..+.+|+.+||--|.. .|.+..-++.+
T Consensus 9 f~afk~was~ygvefkt-ngsqtlaii~~ 36 (79)
T PF09061_consen 9 FNAFKEWASKYGVEFKT-NGSQTLAIIKN 36 (79)
T ss_dssp HHHHHHHHHTTT-EEEE-ETTEEEEEETT
T ss_pred HHHHHHHHHHhCeEEec-CCceEEEeecC
Confidence 56789999999966665 24443444443
No 64
>PF12979 DUF3863: Domain of Unknown Function with PDB structure (DUF3863); InterPro: IPR024334 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=24.32 E-value=47 Score=25.18 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHH
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAI 67 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~i 67 (228)
+.-.++.+++++||+=+.+..|-.|.+++...+..+++
T Consensus 77 ~IR~y~v~c~~k~GDevsyfPGyFpamYlpR~rVnRem 114 (351)
T PF12979_consen 77 QIRDYVVECQQKYGDEVSYFPGYFPAMYLPRERVNREM 114 (351)
T ss_dssp HHHHHHHHHHHHH--EEEE---S-HHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceeeccccchhhcCcHHHHHHHH
Confidence 45677889999999988887776666666666655554
No 65
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=24.19 E-value=55 Score=17.64 Aligned_cols=12 Identities=8% Similarity=0.399 Sum_probs=9.2
Q ss_pred HHHHHcCCeeEE
Q psy16355 37 EQCNNYKGNFIL 48 (228)
Q Consensus 37 ~~~~~yG~i~~~ 48 (228)
++|.|||+.+-+
T Consensus 4 ~FHdKYGn~~l~ 15 (51)
T cd01403 4 DFHDKYGNAVLI 15 (51)
T ss_pred chhhhcCceEEe
Confidence 568899987665
No 66
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=23.23 E-value=1.9e+02 Score=24.36 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=37.3
Q ss_pred hhhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~~ 70 (228)
...+++++.. --. ...+.++..+||+|.++.+. +.-+|-..+++.+..++..
T Consensus 276 ~~l~v~nL~~~~vt---~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~ 332 (481)
T TIGR01649 276 SVLMVSGLHQEKVN---CDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTH 332 (481)
T ss_pred CEEEEeCCCCCCCC---HHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4567777764 222 34667888899999988863 4467788999998888853
No 67
>KOG0110|consensus
Probab=22.73 E-value=84 Score=27.63 Aligned_cols=52 Identities=15% Similarity=-0.008 Sum_probs=39.4
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEee---CCcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWL---GPYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~---~~~~~vvv~~p~~~k~il~~ 70 (228)
.+.+++|++.... ...+......||+|-++-+ |..-.|..++|..+++.+..
T Consensus 386 ~vil~kNlpa~t~---~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrk 440 (725)
T KOG0110|consen 386 TVILVKNLPAGTL---SEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRK 440 (725)
T ss_pred ceeeeccCccccc---cHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHH
Confidence 4567777776554 5677888899999998865 23367888999999999864
No 68
>PF07659 DUF1599: Domain of Unknown Function (DUF1599); InterPro: IPR011630 This entry is represented by Clostridium phage phiCTP1, Gp74. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.71 E-value=1.7e+02 Score=16.84 Aligned_cols=8 Identities=38% Similarity=0.945 Sum_probs=5.5
Q ss_pred Cchhhhhh
Q psy16355 96 GQKWHHRR 103 (228)
Q Consensus 96 g~~w~~~R 103 (228)
|+.|+..|
T Consensus 6 G~awr~~r 13 (61)
T PF07659_consen 6 GDAWRIMR 13 (61)
T ss_pred HHHHHHHC
Confidence 67787654
No 69
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=21.74 E-value=2.6e+02 Score=24.46 Aligned_cols=52 Identities=13% Similarity=0.016 Sum_probs=37.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~~ 70 (228)
...++|||..-.. .+.+.++.+++|+|+.+++- +.-+|...+++.++.++..
T Consensus 59 ~~lFVgnLp~~~t---Ed~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 59 CEVFVGKIPRDLY---EDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CEEEeCCCCCCCC---HHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHH
Confidence 4567888885444 44567778899999877751 2368888999999998854
No 70
>PRK02302 hypothetical protein; Provisional
Probab=21.44 E-value=1.7e+02 Score=18.25 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=22.8
Q ss_pred HHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhc
Q psy16355 37 EQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 37 ~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~ 70 (228)
+-.++||+|+..-=--.-.++=+|-+.+.++..+
T Consensus 21 r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 21 RKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred HHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 3457899998774333445555788888888754
No 71
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=21.05 E-value=1.3e+02 Score=16.97 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=15.3
Q ss_pred CCcCeEEecChhHHHHHhhcC
Q psy16355 51 GPYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 51 ~~~~~vvv~~p~~~k~il~~~ 71 (228)
.+..++.+|+|..+.+++..+
T Consensus 17 ~~~~i~~~cnp~~a~~ll~~~ 37 (65)
T PF03625_consen 17 PPYRILEFCNPKIAYQLLKAD 37 (65)
T ss_dssp S-EEEEEEE-HHHHHHHHCC-
T ss_pred CCeEEEEECChHHHHHHHHhh
Confidence 455688899999999999764
No 72
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.78 E-value=1.2e+02 Score=18.60 Aligned_cols=40 Identities=8% Similarity=0.141 Sum_probs=26.7
Q ss_pred CchhhhhhhhhcCcCCHHHHHHhHH---HHHHHHHHHHHHHhhhh
Q psy16355 96 GQKWHHRRKLLTPAFHYNILETMLE---PMQDTTDILVDRLSQEL 137 (228)
Q Consensus 96 g~~w~~~Rk~l~~~f~~~~l~~~~~---~~~~~~~~~~~~l~~~~ 137 (228)
|..|+++=+- =.|+...+..... -..+.+.+++..|.+..
T Consensus 18 G~~Wk~Lar~--LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~ 60 (86)
T cd08318 18 GEDWKTLAPH--LEMKDKEIRAIESDSEDIKMQAKQLLVAWQDRE 60 (86)
T ss_pred hhhHHHHHHH--cCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 8899885432 2467666655432 35688888999998854
No 73
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=20.03 E-value=2.3e+02 Score=17.59 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCeeEEeeCCc-CeEEecChhHHHHHhhc
Q psy16355 31 FFKFVSEQCNNYKGNFILWLGPY-PKVYFQTPDCTQAILSS 70 (228)
Q Consensus 31 ~~~~~~~~~~~yG~i~~~~~~~~-~~vvv~~p~~~k~il~~ 70 (228)
-..-+.++..-||+|..-|+... -+|.+.+.+.++.+...
T Consensus 21 K~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 21 KTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp -HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHH
T ss_pred hhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHH
Confidence 34456778888999999998654 67888999999987744
Done!