Query psy16355
Match_columns 228
No_of_seqs 194 out of 1868
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 19:15:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k9v_A 1,25-dihydroxyvitamin D 99.9 2.3E-26 7.8E-31 187.3 15.4 208 17-226 32-255 (482)
2 3nxu_A Cytochrome P450 3A4; al 99.9 2.9E-26 1E-30 186.9 13.6 164 16-181 21-187 (485)
3 3e6i_A CYPIIE1, P450-J, cytoch 99.9 2.1E-26 7.2E-31 187.3 12.4 217 4-226 10-230 (476)
4 2ij2_A Cytochrome P450 BM3; mo 99.9 4.1E-25 1.4E-29 179.7 18.7 206 17-226 11-221 (470)
5 3n9y_A Cholesterol SIDE-chain 99.9 3.8E-25 1.3E-29 180.5 17.0 165 6-172 11-186 (487)
6 1n97_A CYP175A1; electron tran 99.9 1.6E-25 5.4E-30 177.9 13.7 196 14-227 4-200 (389)
7 3ld6_A Lanosterol 14-alpha dem 99.9 4.9E-26 1.7E-30 184.6 10.3 212 5-227 6-222 (461)
8 2fdv_A Cytochrome P450 2A6; CY 99.9 3.5E-25 1.2E-29 180.3 13.9 210 16-226 17-231 (476)
9 3mdm_A Cholesterol 24-hydroxyl 99.9 2.8E-24 9.6E-29 174.0 18.8 159 29-187 10-175 (456)
10 1po5_A Cytochrome P450 2B4; ox 99.9 2.9E-25 9.9E-30 180.8 10.8 212 5-226 11-231 (476)
11 3swz_A Steroid 17-alpha-hydrox 99.9 3.2E-25 1.1E-29 181.3 10.9 207 16-227 15-231 (494)
12 3pm0_A Cypib1, cytochrome P450 99.9 4.9E-25 1.7E-29 180.6 10.6 208 16-226 16-237 (507)
13 2cib_A Cytochrome P450 51; hem 99.9 1.3E-24 4.3E-29 176.1 12.9 208 1-226 1-210 (455)
14 3czh_A Cytochrome P450 2R1; vi 99.9 9.5E-25 3.2E-29 178.0 11.4 217 4-226 12-236 (481)
15 3dbg_A Putative cytochrome P45 99.9 8E-26 2.7E-30 183.7 5.0 202 16-226 30-232 (467)
16 3gw9_A Sterol 14alpha-demethyl 99.9 3.9E-25 1.3E-29 178.6 8.9 203 16-226 11-218 (450)
17 1r9o_A Cytochrome P450 2C9; mo 99.9 5.1E-25 1.8E-29 179.3 9.0 212 5-226 12-232 (477)
18 2hi4_A Cytochrome P450 1A2; CY 99.9 1.5E-24 5.2E-29 177.4 9.3 212 4-227 14-246 (495)
19 3s79_A Cytochrome P450 19A1; o 99.9 4.4E-23 1.5E-27 168.9 15.8 202 16-226 52-260 (503)
20 3qz1_A Steroid 21-hydroxylase; 99.9 3.9E-25 1.3E-29 180.7 3.5 199 23-227 37-242 (496)
21 2ve3_A Putative cytochrome P45 99.9 5.8E-23 2E-27 165.9 13.5 192 16-226 19-212 (444)
22 3i3k_A Lanosterol 14-alpha dem 99.9 2E-23 7E-28 169.2 10.4 202 15-227 18-222 (461)
23 3tbg_A Cytochrome P450 2D6; mo 99.9 1.9E-23 6.6E-28 169.9 10.3 159 5-169 11-177 (479)
24 1izo_A P450bsbeta, cytochrome 99.9 1.7E-21 5.8E-26 156.1 12.4 145 18-167 9-156 (417)
25 3awm_A Fatty acid alpha-hydrox 99.9 2.9E-21 1E-25 154.6 11.7 144 18-167 8-155 (415)
26 3v8d_A Cholesterol 7-alpha-mon 99.9 5.8E-21 2E-25 156.0 13.3 202 17-225 22-229 (491)
27 2cd8_A Cytochrome P450 monooxy 99.8 3.4E-20 1.2E-24 149.3 12.2 147 16-166 33-186 (436)
28 2wm5_A CYP124, putative cytoch 99.8 1.4E-19 4.7E-24 145.7 15.1 180 29-227 44-236 (435)
29 1cpt_A Cytochrome P450-TERP; o 99.8 3.9E-20 1.3E-24 148.7 11.8 187 29-227 25-229 (428)
30 3oo3_A OXY protein; cytochrome 99.8 1E-19 3.4E-24 144.3 12.4 134 30-166 13-152 (384)
31 1odo_A Putative cytochrome P45 99.8 3E-19 1E-23 142.6 14.2 134 30-166 16-162 (408)
32 1ued_A P450 OXYC, P450 monooxy 99.8 1.8E-19 6.3E-24 143.8 12.8 131 30-165 25-169 (406)
33 3ejb_B Biotin biosynthesis cyt 99.8 2.7E-19 9.4E-24 142.7 13.5 133 29-166 13-152 (404)
34 1z8o_A 6-deoxyerythronolide B 99.8 3.5E-19 1.2E-23 142.1 13.8 170 30-226 15-201 (404)
35 3dax_A Cytochrome P450 7A1; ch 99.8 6.1E-19 2.1E-23 143.9 14.2 150 17-167 22-177 (491)
36 2xkr_A CYP142, putative cytoch 99.8 6.7E-19 2.3E-23 140.2 13.9 173 29-226 18-191 (398)
37 3tkt_A Cytochrome P450; aromat 99.8 5.1E-19 1.7E-23 143.0 12.3 187 30-227 46-251 (450)
38 3abb_A CYP105D6, cytochrome P4 99.8 3.2E-19 1.1E-23 142.5 10.7 132 30-166 25-167 (408)
39 2z3t_A Cytochrome P450; monoxy 99.8 1.2E-18 4.1E-23 139.8 13.3 177 30-227 21-216 (425)
40 3a4g_A Vitamin D hydroxylase; 99.8 6.3E-19 2.2E-23 140.9 11.4 131 30-166 21-159 (411)
41 1gwi_A CYP154C1, cytochrome P4 99.8 2E-18 6.9E-23 138.0 14.0 132 30-166 18-165 (411)
42 1q5d_A P450 epoxidase; cytochr 99.8 8.7E-19 3E-23 140.4 11.5 177 30-227 27-215 (419)
43 2zbx_A Cytochrome P450-SU1; be 99.8 1.9E-18 6.4E-23 138.2 13.4 133 30-166 25-168 (412)
44 3r9b_A Cytochrome P450 164A2; 99.8 1.9E-18 6.4E-23 138.4 13.1 178 30-227 30-218 (418)
45 3tyw_A Putative cytochrome P45 99.8 2.1E-18 7.3E-23 138.1 13.2 134 29-166 29-172 (417)
46 3aba_A Cytochrome P450; oxidor 99.8 5.4E-19 1.8E-23 141.0 9.5 132 30-166 20-160 (403)
47 2y5n_A MYCG, P-450-like protei 99.8 6.9E-19 2.4E-23 140.9 9.8 131 30-166 38-176 (417)
48 1jfb_A Nitric-oxide reductase 99.8 5.7E-18 2E-22 135.0 15.0 151 6-166 3-163 (404)
49 2dkk_A Cytochrome P450; CYP158 99.8 1.6E-18 5.6E-23 138.5 11.7 132 30-166 28-169 (411)
50 4fb2_A P450CIN; heme, monooxyg 99.8 1.9E-18 6.5E-23 137.6 11.9 133 29-166 19-156 (398)
51 2xbk_A PIMD protein; epoxidati 99.8 3.8E-18 1.3E-22 136.0 12.3 132 30-166 27-170 (404)
52 2zwu_A Camphor 5-monooxygenase 99.8 3.3E-18 1.1E-22 136.9 11.5 131 29-166 37-173 (415)
53 2z36_A MOXA, cytochrome P450 t 99.8 2E-18 7E-23 138.0 10.1 134 30-166 23-169 (413)
54 3buj_A CALO2; heme, iron, meta 99.8 1.2E-17 4.2E-22 132.8 14.5 128 30-166 14-151 (397)
55 3ivy_A Cytochrome P450 CYP125; 99.8 1.8E-18 6.3E-23 139.1 9.3 130 30-164 38-186 (433)
56 2uuq_A CYP130, cytochrome P450 99.8 8.7E-18 3E-22 134.4 12.8 131 29-166 25-168 (414)
57 1s1f_A Putative cytochrome P45 99.8 4.4E-18 1.5E-22 135.8 10.8 132 30-166 25-166 (406)
58 3b6h_A Prostacyclin synthase; 99.7 1.4E-16 4.8E-21 130.2 17.9 147 17-167 27-177 (498)
59 2jjn_A Cytochrome P450 113A1; 99.7 1.4E-17 4.8E-22 133.1 11.6 172 29-226 28-202 (411)
60 3nc3_A Cytochrome P450 CYPX; c 99.7 3.1E-18 1.1E-22 138.1 6.0 175 30-226 54-230 (441)
61 1lfk_A OXYB, P450 monooxygenas 99.7 7E-17 2.4E-21 128.5 12.8 125 37-166 21-161 (398)
62 3mgx_A Putative P450 monooxyge 99.7 1.7E-17 5.8E-22 132.7 7.1 132 29-165 37-177 (415)
63 3b98_A Prostaglandin I2 syntha 99.7 1.4E-16 4.8E-21 129.4 11.3 143 17-163 27-173 (475)
64 1io7_A Cytochrome P450 CYP119; 99.7 9.7E-17 3.3E-21 126.4 9.8 125 32-166 2-139 (368)
65 3dsk_A Cytochrome P450 74A, ch 99.7 1.3E-16 4.4E-21 130.4 10.6 151 16-168 35-206 (495)
66 3rwl_A Cytochrome P450 alkane 99.7 3.4E-16 1.2E-20 125.6 12.8 131 30-165 39-182 (426)
67 3lxh_A Cytochrome P450; heme, 99.7 1.1E-16 3.6E-21 128.4 9.7 177 29-227 38-218 (421)
68 3oft_A Cytochrome P450, CYP101 99.7 1.7E-16 5.9E-21 126.2 9.3 131 29-165 24-157 (396)
69 3p3o_A Cytochrome P450; monoox 99.7 6.8E-17 2.3E-21 129.3 5.9 128 30-165 34-170 (416)
70 1n40_A P450 MT2, cytochrome P4 99.7 7.3E-17 2.5E-21 128.4 5.8 128 30-166 17-155 (396)
71 2wiy_A XPLA-heme, cytochrome P 99.7 3E-15 1E-19 119.0 14.5 128 30-165 21-150 (394)
72 3dan_A Cytochrome P450 74A2; A 99.6 9.8E-16 3.4E-20 124.4 10.5 148 17-167 17-187 (473)
73 3b4x_A 367AA long hypothetical 99.6 3.5E-16 1.2E-20 123.2 7.4 120 32-164 2-134 (367)
74 2rfb_A Cytochrome P450; heme, 99.6 7.1E-16 2.4E-20 120.4 5.3 113 40-166 2-116 (343)
75 4dnj_A Putative cytochrome P45 99.3 6.6E-12 2.3E-16 100.3 9.8 127 30-161 35-168 (412)
76 4dxy_A Cytochrome P450, CYP101 99.2 9E-11 3.1E-15 93.8 11.6 132 29-165 37-172 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.2 3.9E-08 1.3E-12 77.4 -3.2 111 30-166 60-180 (381)
78 2diu_A KIAA0430 protein; struc 90.2 0.74 2.5E-05 28.2 5.1 59 18-77 12-75 (96)
79 2a3j_A U1 small nuclear ribonu 83.8 2.6 9.1E-05 27.2 5.3 56 15-70 29-91 (127)
80 1nu4_A U1A RNA binding domain; 82.7 4.3 0.00015 24.2 5.8 54 16-69 9-69 (97)
81 2dgx_A KIAA0430 protein; RRM d 82.7 4.7 0.00016 24.2 5.9 53 17-69 11-70 (96)
82 1x4c_A Splicing factor, argini 82.5 2.8 9.6E-05 25.9 5.0 60 8-70 8-69 (108)
83 2wbr_A GW182, gawky, LD47780P; 82.3 2 6.8E-05 25.9 3.9 52 14-68 6-60 (89)
84 1oo0_B CG8781-PA, drosophila Y 79.3 4.2 0.00014 25.0 5.0 60 7-69 18-86 (110)
85 3ex7_B RNA-binding protein 8A; 78.7 3.9 0.00013 25.9 4.8 59 8-69 15-82 (126)
86 2dgv_A HnRNP M, heterogeneous 78.5 3.2 0.00011 24.6 4.1 52 15-69 8-66 (92)
87 2dgu_A Heterogeneous nuclear r 77.8 5.3 0.00018 24.3 5.0 52 15-69 11-63 (103)
88 2ytc_A PRE-mRNA-splicing facto 77.0 5.7 0.00019 23.0 4.9 56 12-70 9-67 (85)
89 2krb_A Eukaryotic translation 76.7 7.2 0.00025 22.3 5.2 53 18-70 4-66 (81)
90 1s79_A Lupus LA protein; RRM, 76.1 6 0.00021 24.2 4.9 52 16-70 12-71 (103)
91 1iqt_A AUF1, heterogeneous nuc 75.7 7.1 0.00024 21.9 4.9 50 19-71 3-61 (75)
92 3beg_B Splicing factor, argini 75.6 3.3 0.00011 26.0 3.7 51 16-69 17-69 (115)
93 2cq1_A PTB-like protein L; RRM 75.5 3.2 0.00011 25.5 3.5 55 12-69 12-69 (101)
94 3d2w_A TAR DNA-binding protein 75.1 4.8 0.00017 23.8 4.2 52 13-67 9-64 (89)
95 2cph_A RNA binding motif prote 74.5 9.4 0.00032 23.2 5.6 55 12-69 12-76 (107)
96 1whx_A Hypothetical protein ri 72.4 10 0.00035 23.4 5.4 50 17-69 12-64 (111)
97 2cq3_A RNA-binding protein 9; 72.2 8.3 0.00029 23.3 4.9 54 13-69 13-73 (103)
98 4fxv_A ELAV-like protein 1; RN 72.0 7.5 0.00026 23.5 4.6 50 17-69 21-79 (99)
99 1sjq_A Polypyrimidine tract-bi 71.5 11 0.00037 23.4 5.2 51 16-69 17-70 (105)
100 1p27_B RNA-binding protein 8A; 71.5 6.5 0.00022 23.9 4.3 52 15-69 23-83 (106)
101 2cqi_A Nucleolysin TIAR; RNA r 71.2 9.3 0.00032 23.0 5.0 53 14-69 14-73 (103)
102 2cpj_A Non-POU domain-containi 71.1 4.2 0.00015 24.5 3.3 55 12-69 12-69 (99)
103 1wex_A Hypothetical protein (r 70.9 8.1 0.00028 23.7 4.6 53 14-69 14-69 (104)
104 3mdf_A Peptidyl-prolyl CIS-tra 70.8 12 0.00041 21.5 5.2 50 17-69 9-67 (85)
105 2e5h_A Zinc finger CCHC-type a 70.5 10 0.00034 22.4 4.9 54 13-69 14-76 (94)
106 4f25_A Polyadenylate-binding p 70.0 5.9 0.0002 24.7 3.9 52 16-70 6-64 (115)
107 2cqc_A Arginine/serine-rich sp 69.9 12 0.0004 22.1 5.2 54 13-69 13-75 (95)
108 2e44_A Insulin-like growth fac 69.7 13 0.00044 22.0 5.3 52 15-69 15-72 (96)
109 2ywk_A Putative RNA-binding pr 69.7 8.9 0.0003 22.7 4.5 54 13-69 14-75 (95)
110 2dnq_A RNA-binding protein 4B; 69.4 9.6 0.00033 22.3 4.6 51 16-69 9-60 (90)
111 1x5u_A Splicing factor 3B subu 69.3 13 0.00046 22.4 5.4 54 14-70 14-76 (105)
112 1whw_A Hypothetical protein ri 69.0 15 0.00053 21.8 5.6 51 16-69 9-68 (99)
113 2dnp_A RNA-binding protein 14; 68.7 15 0.00051 21.4 5.5 51 16-69 10-61 (90)
114 2dnm_A SRP46 splicing factor; 68.5 9.6 0.00033 23.0 4.6 51 16-69 14-73 (103)
115 2nlw_A Eukaryotic translation 68.4 10 0.00036 23.0 4.7 56 15-70 15-80 (105)
116 2x1f_A MRNA 3'-END-processing 68.2 13 0.00045 22.0 5.1 49 18-69 5-62 (96)
117 1why_A Hypothetical protein ri 67.7 16 0.00054 21.7 5.4 51 16-69 18-71 (97)
118 2hvz_A Splicing factor, argini 67.6 11 0.00038 22.6 4.7 48 19-69 4-55 (101)
119 1x4h_A RNA-binding protein 28; 67.5 13 0.00044 22.7 5.1 53 14-69 14-75 (111)
120 2dgt_A RNA-binding protein 30; 67.1 14 0.00048 21.7 5.0 51 16-69 11-62 (92)
121 3ns6_A Eukaryotic translation 66.9 9.3 0.00032 23.0 4.2 55 15-69 6-72 (100)
122 1x4g_A Nucleolysin TIAR; struc 66.3 16 0.00055 22.3 5.3 50 17-69 27-79 (109)
123 3lqv_A PRE-mRNA branch site pr 66.3 16 0.00056 22.4 5.4 51 16-69 9-65 (115)
124 2jvr_A Nucleolar protein 3; RN 65.9 14 0.00046 23.1 4.9 51 17-70 30-86 (111)
125 2div_A TRNA selenocysteine ass 65.9 14 0.00047 22.0 4.9 52 16-70 10-71 (99)
126 1x5s_A Cold-inducible RNA-bind 65.5 12 0.00041 22.5 4.6 52 15-69 12-72 (102)
127 2xnq_A Nuclear polyadenylated 65.4 19 0.00064 21.5 5.4 53 14-69 21-75 (97)
128 2cpf_A RNA binding motif prote 65.3 12 0.0004 22.3 4.4 51 17-70 7-69 (98)
129 2cq4_A RNA binding motif prote 65.2 15 0.0005 22.6 5.1 50 16-68 26-84 (114)
130 4a8x_A RNA-binding protein wit 64.7 18 0.00061 20.8 5.2 49 18-69 7-65 (88)
131 2cqd_A RNA-binding region cont 64.7 16 0.00054 22.6 5.1 55 13-70 15-78 (116)
132 1x4a_A Splicing factor, argini 64.6 21 0.00072 21.7 5.7 51 16-69 23-79 (109)
133 2dgo_A Cytotoxic granule-assoc 64.6 15 0.00051 22.7 5.0 52 15-69 15-75 (115)
134 2mss_A Protein (musashi1); RNA 64.6 12 0.00041 20.9 4.2 48 19-69 3-59 (75)
135 1wf0_A TDP-43, TAR DNA-binding 64.5 9.6 0.00033 22.2 3.9 49 17-68 7-59 (88)
136 2dnh_A Bruno-like 5, RNA bindi 64.3 9.8 0.00033 23.0 4.0 52 15-69 15-74 (105)
137 2do4_A Squamous cell carcinoma 64.2 10 0.00035 22.7 4.1 51 16-69 18-76 (100)
138 2kvi_A Nuclear polyadenylated 63.9 14 0.00049 21.9 4.6 51 17-70 12-64 (96)
139 1wi8_A EIF-4B, eukaryotic tran 63.7 11 0.00038 22.8 4.2 61 4-68 4-74 (104)
140 3bs9_A Nucleolysin TIA-1 isofo 63.6 17 0.00059 20.8 4.9 50 17-69 8-66 (87)
141 1rk8_A CG8781-PA, CG8781-PA pr 63.6 8 0.00027 25.9 3.8 51 16-69 73-132 (165)
142 1x4d_A Matrin 3; structural ge 63.5 10 0.00035 23.3 3.9 52 15-69 15-70 (102)
143 3md1_A Nuclear and cytoplasmic 63.1 12 0.00042 21.3 4.1 48 19-69 5-61 (83)
144 2dhg_A TRNA selenocysteine ass 63.1 15 0.00051 22.1 4.7 51 17-70 11-70 (104)
145 3s7r_A Heterogeneous nuclear r 62.9 12 0.0004 21.7 4.0 52 16-70 12-72 (87)
146 2err_A Ataxin-2-binding protei 62.7 7.6 0.00026 23.9 3.3 51 16-69 30-87 (109)
147 2do0_A HnRNP M, heterogeneous 62.3 11 0.00039 23.1 4.1 55 12-69 12-74 (114)
148 2dgs_A DAZ-associated protein 61.6 16 0.00055 21.7 4.6 51 16-69 11-70 (99)
149 3ucg_A Polyadenylate-binding p 61.4 19 0.00064 20.8 4.8 49 17-68 8-65 (89)
150 2jvo_A Nucleolar protein 3; nu 61.0 17 0.00057 22.3 4.6 51 16-69 32-83 (108)
151 2dis_A Unnamed protein product 61.0 23 0.0008 21.4 5.4 52 16-70 9-71 (109)
152 2ad9_A Polypyrimidine tract-bi 61.0 13 0.00045 23.6 4.1 52 15-69 31-85 (119)
153 2fy1_A RNA-binding motif prote 60.8 17 0.00058 22.6 4.7 50 17-69 9-66 (116)
154 2cpz_A CUG triplet repeat RNA- 60.2 16 0.00055 22.5 4.5 51 16-69 26-85 (115)
155 3s8s_A Histone-lysine N-methyl 59.8 17 0.00058 22.4 4.5 50 17-69 8-66 (110)
156 2kxn_B Transformer-2 protein h 59.7 21 0.00073 22.7 5.1 51 16-69 47-106 (129)
157 2lea_A Serine/arginine-rich sp 59.6 26 0.0009 22.5 5.6 52 16-70 48-108 (135)
158 1wf1_A RNA-binding protein RAL 59.4 18 0.0006 22.1 4.6 53 14-69 26-80 (110)
159 2ku7_A MLL1 PHD3-CYP33 RRM chi 59.0 23 0.00077 22.6 5.3 52 15-69 63-123 (140)
160 2cpd_A Apobec-1 stimulating pr 59.0 24 0.00084 20.9 5.1 52 15-69 15-69 (99)
161 2rs2_A Musashi-1, RNA-binding 58.9 27 0.00092 21.3 5.4 51 17-70 27-86 (109)
162 3r27_A HnRNP L, heterogeneous 58.9 20 0.00068 21.9 4.6 52 15-69 21-75 (100)
163 3ulh_A THO complex subunit 4; 58.8 17 0.00059 21.9 4.4 52 15-69 29-88 (107)
164 1sjr_A Polypyrimidine tract-bi 58.8 22 0.00075 24.1 5.1 50 18-70 49-103 (164)
165 2adc_A Polypyrimidine tract-bi 58.8 20 0.00069 25.4 5.4 53 14-69 33-90 (229)
166 2dh8_A DAZ-associated protein 58.6 19 0.00065 21.7 4.6 53 15-70 16-77 (105)
167 2la4_A Nuclear and cytoplasmic 58.5 19 0.00067 21.4 4.6 50 17-69 29-81 (101)
168 2dgp_A Bruno-like 4, RNA bindi 58.5 22 0.00076 21.4 4.9 52 15-69 13-73 (106)
169 2cqb_A Peptidyl-prolyl CIS-tra 58.1 10 0.00036 22.7 3.3 52 15-69 12-72 (102)
170 2dnz_A Probable RNA-binding pr 58.0 21 0.00073 20.9 4.7 50 17-69 7-65 (95)
171 2cqg_A TDP-43, TAR DNA-binding 57.7 22 0.00075 21.3 4.8 52 16-70 16-76 (103)
172 2jwn_A Embryonic polyadenylate 57.6 15 0.00052 23.0 4.1 49 17-68 38-95 (124)
173 2d9p_A Polyadenylate-binding p 56.9 10 0.00035 22.9 3.1 52 15-69 15-73 (103)
174 2jrs_A RNA-binding protein 39; 56.7 17 0.00058 22.3 4.1 51 16-69 27-86 (108)
175 1p1t_A Cleavage stimulation fa 55.3 15 0.00053 22.0 3.7 52 15-69 8-68 (104)
176 1x4e_A RNA binding motif, sing 55.2 13 0.00045 21.3 3.3 49 18-69 8-65 (85)
177 1u6f_A Tcubp1, RNA-binding pro 55.1 20 0.0007 22.9 4.5 52 16-70 43-103 (139)
178 1whv_A Poly(A)-specific ribonu 55.0 9.9 0.00034 23.3 2.6 39 31-69 28-67 (100)
179 3pgw_S U1-70K; protein-RNA com 54.9 19 0.00064 28.7 5.0 52 16-70 103-163 (437)
180 2cq2_A Hypothetical protein LO 54.4 37 0.0013 21.3 5.6 52 16-70 26-82 (114)
181 2e5j_A Methenyltetrahydrofolat 54.1 20 0.00067 21.3 4.0 54 13-69 17-74 (97)
182 1h2v_Z 20 kDa nuclear CAP bind 53.8 26 0.00088 23.0 4.9 52 16-70 40-100 (156)
183 2khc_A Testis-specific RNP-typ 53.6 16 0.00053 22.7 3.6 51 17-70 42-101 (118)
184 2cq0_A Eukaryotic translation 53.5 11 0.00037 22.7 2.8 52 15-69 15-75 (103)
185 2i2y_A Fusion protein consists 53.4 21 0.00071 23.3 4.4 53 14-69 72-128 (150)
186 3tyt_A Heterogeneous nuclear r 52.8 27 0.00094 24.3 5.1 50 17-69 6-60 (205)
187 3zzy_A Polypyrimidine tract-bi 52.2 22 0.00077 22.9 4.2 49 18-69 31-84 (130)
188 2cjk_A Nuclear polyadenylated 51.4 32 0.0011 22.5 5.2 51 17-70 5-64 (167)
189 1uaw_A Mouse-musashi-1; RNP-ty 51.4 14 0.00048 20.6 2.9 49 19-70 4-61 (77)
190 1x5t_A Splicing factor 3B subu 51.4 20 0.00069 21.1 3.8 51 17-70 7-67 (96)
191 2qfj_A FBP-interacting repress 51.3 32 0.0011 23.7 5.4 51 16-69 29-88 (216)
192 2kn4_A Immunoglobulin G-bindin 51.3 38 0.0013 22.1 5.5 53 15-70 70-131 (158)
193 1fxl_A Paraneoplastic encephal 50.6 28 0.00097 22.7 4.8 49 18-69 5-62 (167)
194 3v4m_A Splicing factor U2AF 65 50.5 40 0.0014 20.5 5.4 39 31-69 28-77 (105)
195 2kt5_A RNA and export factor-b 49.7 33 0.0011 21.4 4.8 51 16-69 36-94 (124)
196 2f3j_A RNA and export factor b 49.3 37 0.0013 23.0 5.2 51 16-69 89-147 (177)
197 2fc9_A NCL protein; structure 49.1 10 0.00035 22.7 2.2 58 9-69 9-71 (101)
198 1x4b_A Heterogeneous nuclear r 48.6 24 0.00082 21.7 3.9 53 15-70 27-88 (116)
199 2la6_A RNA-binding protein FUS 48.4 20 0.00067 21.3 3.4 56 11-69 9-81 (99)
200 2xs2_A Deleted in azoospermia- 48.0 19 0.00066 21.5 3.3 51 16-69 10-68 (102)
201 1b7f_A Protein (SXL-lethal pro 47.8 38 0.0013 22.1 5.1 49 18-69 6-63 (168)
202 1x4f_A Matrin 3; structural ge 47.1 9.4 0.00032 24.0 1.7 52 15-69 25-80 (112)
203 2d9o_A DNAJ (HSP40) homolog, s 46.7 46 0.0016 20.1 5.0 39 32-70 31-73 (100)
204 3md3_A Nuclear and cytoplasmic 46.2 26 0.0009 22.8 4.1 48 19-69 4-59 (166)
205 2cpi_A CCR4-NOT transcription 46.1 9.1 0.00031 23.6 1.6 52 16-70 16-82 (111)
206 3n9u_C Cleavage and polyadenyl 45.1 39 0.0013 22.4 4.7 51 17-70 57-118 (156)
207 1l3k_A Heterogeneous nuclear r 45.1 33 0.0011 23.2 4.5 55 13-70 11-74 (196)
208 2dit_A HIV TAT specific factor 44.8 36 0.0012 20.9 4.3 38 32-69 40-82 (112)
209 2e5i_A Heterogeneous nuclear r 44.7 41 0.0014 21.4 4.5 48 19-69 29-80 (124)
210 3p5t_L Cleavage and polyadenyl 43.4 23 0.00079 20.6 3.1 49 18-69 4-63 (90)
211 2lxi_A RNA-binding protein 10; 43.3 22 0.00074 20.9 2.9 50 18-70 4-63 (91)
212 3egr_A Phenylacetate-COA oxyge 43.1 11 0.00036 23.0 1.4 62 20-81 25-88 (96)
213 3pgw_A U1-A; protein-RNA compl 42.7 48 0.0016 24.1 5.4 55 15-69 9-70 (282)
214 3ctr_A Poly(A)-specific ribonu 42.7 8.4 0.00029 23.6 0.9 39 32-70 19-58 (101)
215 1x5p_A Negative elongation fac 42.4 40 0.0014 19.8 4.1 48 17-69 17-67 (97)
216 1qm9_A Polypyrimidine tract-bi 42.1 46 0.0016 22.6 4.9 49 18-69 6-59 (198)
217 3nmr_A Cugbp ELAV-like family 42.0 43 0.0015 22.0 4.7 50 17-69 97-154 (175)
218 2e5g_A U6 snRNA-specific termi 41.5 52 0.0018 19.2 4.9 50 17-69 10-63 (94)
219 1wg5_A Heterogeneous nuclear r 41.3 37 0.0013 20.4 3.9 53 16-71 16-77 (104)
220 4f02_A Polyadenylate-binding p 41.2 47 0.0016 23.1 4.9 51 17-70 17-76 (213)
221 3q2s_C Cleavage and polyadenyl 40.8 46 0.0016 23.7 4.8 51 17-70 70-131 (229)
222 1x5o_A RNA binding motif, sing 40.3 27 0.00091 21.4 3.1 51 16-69 26-84 (114)
223 2voo_A Lupus LA protein; RNA-b 39.1 38 0.0013 23.3 4.1 50 18-70 112-169 (193)
224 2ki2_A SS-DNA binding protein 38.8 22 0.00076 20.6 2.5 49 18-70 4-61 (90)
225 3s6e_A RNA-binding protein 39; 38.0 67 0.0023 19.9 4.7 41 29-69 28-73 (114)
226 2cpe_A RNA-binding protein EWS 36.9 50 0.0017 20.0 4.0 52 15-69 15-83 (113)
227 2hzc_A Splicing factor U2AF 65 36.7 58 0.002 18.4 5.2 51 15-68 6-70 (87)
228 1jmt_A Splicing factor U2AF 35 35.4 74 0.0025 19.2 4.9 37 33-69 41-86 (104)
229 2cpy_A RNA-binding protein 12; 35.4 36 0.0012 20.9 3.2 53 16-71 16-77 (114)
230 2lkz_A RNA-binding protein 5; 33.5 32 0.0011 20.5 2.6 52 16-70 10-72 (95)
231 2dng_A Eukaryotic translation 32.8 56 0.0019 19.4 3.7 55 10-68 10-73 (103)
232 2g4b_A Splicing factor U2AF 65 32.4 67 0.0023 21.0 4.4 51 16-69 95-154 (172)
233 2cpx_A Hypothetical protein FL 32.2 32 0.0011 21.0 2.5 52 16-70 26-86 (115)
234 2ghp_A U4/U6 snRNA-associated 31.6 67 0.0023 23.5 4.6 51 16-69 42-99 (292)
235 2dnl_A Cytoplasmic polyadenyla 31.0 35 0.0012 20.9 2.6 51 16-69 9-70 (114)
236 3pgw_A U1-A; protein-RNA compl 29.5 94 0.0032 22.5 5.1 50 17-69 209-262 (282)
237 2j76_E EIF-4B, EIF4B, eukaryot 29.1 31 0.001 20.6 2.0 52 13-68 17-78 (100)
238 3r45_C Holliday junction recog 29.1 42 0.0014 19.1 2.3 21 208-228 21-41 (81)
239 2cqp_A RNA-binding protein 12; 28.8 22 0.00075 21.0 1.3 53 15-70 15-76 (98)
240 2cqh_A IGF-II mRNA-binding pro 27.2 94 0.0032 17.8 4.0 51 16-69 9-62 (93)
241 2bz2_A Negative elongation fac 26.6 54 0.0019 20.5 2.9 48 17-69 41-91 (121)
242 2yh0_A Splicing factor U2AF 65 26.4 99 0.0034 20.7 4.5 51 16-69 115-174 (198)
243 2hgn_A Heterogeneous nuclear r 25.4 77 0.0026 20.5 3.5 51 16-70 47-105 (139)
244 3ue2_A Poly(U)-binding-splicin 25.3 97 0.0033 19.3 3.9 55 15-69 20-89 (118)
245 2dha_A FLJ20171 protein; RRM d 24.4 67 0.0023 20.2 3.0 52 17-71 25-88 (123)
246 2p22_C Protein SRN2; endosome, 24.4 1.7E+02 0.0057 20.3 5.1 54 97-150 111-166 (192)
247 3sde_A Paraspeckle component 1 23.3 1.1E+02 0.0039 21.9 4.5 51 17-70 98-156 (261)
248 2pe8_A Splicing factor 45; RRM 22.4 1.1E+02 0.0038 18.5 3.7 39 31-69 26-74 (105)
249 2ek1_A RNA-binding protein 12; 22.4 25 0.00087 20.5 0.7 51 16-69 16-75 (95)
No 1
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.94 E-value=2.3e-26 Score=187.33 Aligned_cols=208 Identities=14% Similarity=0.164 Sum_probs=151.2
Q ss_pred hhhccccccc----CcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhh---hhhHhh--h
Q psy16355 17 KRKLGLLNIK----LSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEY---ALLDVW--L 87 (228)
Q Consensus 17 ~~~~g~~~~~----~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~---~~~~~~--~ 87 (228)
.+++||+..+ ..++++..+.+|+++||||+++++|+.++|+++||+++++|+.++..+.+++.. ...... .
T Consensus 32 ~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~r~~~~~~~~~~~~~~~ 111 (482)
T 3k9v_A 32 WPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNE 111 (482)
T ss_dssp CTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTCCSSCCCCCCHHHHHHHHHHTC
T ss_pred CCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhcCCCCCCCCchHHHHHHHhcCC
Confidence 5778888765 245789999999999999999999999999999999999999876445444321 112222 3
Q ss_pred cccccccCCchhhhhhhhhcCcC-CHHHHHHhHHHHHHHHHHHHHHHhhhhC--CCceehHHhHHHHHHHHHHHHhcCcc
Q psy16355 88 GTGLITSTGQKWHHRRKLLTPAF-HYNILETMLEPMQDTTDILVDRLSQELD--NSGFDVFPIMKLTTLDIVCETTMGYD 164 (228)
Q Consensus 88 g~~l~~~~g~~w~~~Rk~l~~~f-~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~vi~~~~fG~~ 164 (228)
+.|+++++|+.|+++||+++++| +++.++.+.+.+.++++.+++.+.+.+. |+++|+.+.+..+++|+|+.++||.+
T Consensus 112 ~~~l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~t~dvi~~~~fG~~ 191 (482)
T 3k9v_A 112 AYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLYEKR 191 (482)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcccc
Confidence 57899999999999999999986 8889999999999999999999987642 66899999999999999999999999
Q ss_pred cCCCCCC----CchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 165 LGALKNQ----NSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 165 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
++..++. ..++.+.+..++.........|..+..++ +.+..++..++.+.+.++++++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~i~ 255 (482)
T 3k9v_A 192 FGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRL--NTKVWQAHTLAWDTIFKSVKPCID 255 (482)
T ss_dssp CCSSSTTSTTSSHHHHHHHHHHHTTGGGGSSSCHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9765432 23455555444432221111121122222 334445555666666666655554
No 2
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.94 E-value=2.9e-26 Score=186.92 Aligned_cols=164 Identities=18% Similarity=0.340 Sum_probs=137.1
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC--CCCCchhhhhhhHhhhcccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST--EHIDKSTEYALLDVWLGTGLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~--~~~~k~~~~~~~~~~~g~~l~~ 93 (228)
+.+++||+..+.. +++..+.+|+++||||+++++|+.++|+|+||++++++|.++ +.+.+.+..... ...+.++++
T Consensus 21 ~~PliGn~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~-~~~~~~l~~ 98 (485)
T 3nxu_A 21 PLPFLGNILSYHK-GFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPV-GFMKSAISI 98 (485)
T ss_dssp CBTTTBTGGGGGG-CHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCC-GGGGGSTTT
T ss_pred CcCeecCcHHhhc-ChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccccc-cccccCccc
Confidence 3678999998765 688899999999999999999999999999999999999765 334333322222 245788999
Q ss_pred cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCCCCC
Q psy16355 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQN 172 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 172 (228)
.+|+.|+++||+++++|++++++.+.+.+.++++++++.+.+..+ |+++|+.+.+..+++|+|+.++||.+++..+++.
T Consensus 99 ~~g~~w~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~fG~~~~~~~~~~ 178 (485)
T 3nxu_A 99 AEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQ 178 (485)
T ss_dssp CCHHHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHHSCCCCGGGCTT
T ss_pred cCCcHHHHHHhhcChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHcCCccccccCCC
Confidence 999999999999999999999999999999999999999976543 7899999999999999999999999998776544
Q ss_pred chHHHHHHH
Q psy16355 173 SAYTQAVGI 181 (228)
Q Consensus 173 ~~~~~~~~~ 181 (228)
+++.+.+..
T Consensus 179 ~~~~~~~~~ 187 (485)
T 3nxu_A 179 DPFVENTKK 187 (485)
T ss_dssp CHHHHHHTT
T ss_pred cHHHHHHHH
Confidence 555554443
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.94 E-value=2.1e-26 Score=187.33 Aligned_cols=217 Identities=10% Similarity=0.134 Sum_probs=152.1
Q ss_pred ccccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhh
Q psy16355 4 GISKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYAL 82 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~ 82 (228)
+.++||. +.+++||+..+...+++..+.+|+++||+|+++++|+.++|+++||++++++|.++ ..+.+++.+..
T Consensus 10 ~lpPgP~-----~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~ 84 (476)
T 3e6i_A 10 KLPPGPF-----PLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPA 84 (476)
T ss_dssp CCCCCCC-----CBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGG
T ss_pred CCCcCCC-----CcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCch
Confidence 3455554 45789999988766889999999999999999999999999999999999999875 45555443333
Q ss_pred hHhhhcccccccCCchhhhhhhhhcCcCCHHHH--HHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHh
Q psy16355 83 LDVWLGTGLITSTGQKWHHRRKLLTPAFHYNIL--ETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETT 160 (228)
Q Consensus 83 ~~~~~g~~l~~~~g~~w~~~Rk~l~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~ 160 (228)
...+.+.|+++++|+.|+++||++.+.|+...+ +.+.+.+.++++.+++.|.+. .++++|+.+.+..+++|+|+.++
T Consensus 85 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~-~~~~~d~~~~~~~~~~dvi~~~~ 163 (476)
T 3e6i_A 85 FHAHRDRGIIFNNGPTWKDIRRFSLTTLRNYGMGKQGNESRIQREAHFLLEALRKT-QGQPFDPTFLIGCAPCNVIADIL 163 (476)
T ss_dssp GGGGTTSSSTTCCSTTHHHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT-TTSCBCTHHHHTHHHHHHHHHHH
T ss_pred hheecCCCEEecCCcHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHh-CCCCcChHHHHHHHHHHHHHHHH
Confidence 344455589999999999999987777665433 346788999999999999764 26689999999999999999999
Q ss_pred cCcccCCCCCCCchHHHHHHHHHHHHHHHhhcccc-chhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 161 MGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWL-HYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 161 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
||.+++..+.....+...+...+............ ++.++..+....++..++.+.+.+++.+.|+
T Consensus 164 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp~~~~~~~~~~~~~~~~~~~~i~ 230 (476)
T 3e6i_A 164 FRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLPGSHRKVIKNVAEVKEYVSERVK 230 (476)
T ss_dssp HSCCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765311122233333322221111111111 1113322333455666777777777777765
No 4
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.93 E-value=4.1e-25 Score=179.67 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=151.3
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh--hhhhHhhhccccccc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE--YALLDVWLGTGLITS 94 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~--~~~~~~~~g~~l~~~ 94 (228)
.+++||++.+..++++..+.+|+++||||+++++++.+.++|+||+++++|+.+.. +.+... ........+.|++++
T Consensus 11 ~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~~-f~~~~~~~~~~~~~~~~~~l~~~ 89 (470)
T 2ij2_A 11 FGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESR-FDKNLSQALKFVRDFAGDGLFTS 89 (470)
T ss_dssp CGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTTT-EEECCCHHHHHHHHHHTTSGGGS
T ss_pred CCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhcC-cCcCchhHHHHHHHhcCCceEEc
Confidence 45689998876557788899999999999999999889999999999999996543 344221 222233356788876
Q ss_pred --CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCC-CC
Q psy16355 95 --TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALK-NQ 171 (228)
Q Consensus 95 --~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~-~~ 171 (228)
+|+.|+++||+++++|++++++.+.+.+.++++++++.|.+..+++++|+.+.+..+++|+|+.++||.+++..+ +.
T Consensus 90 ~~~g~~w~~~Rr~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 169 (470)
T 2ij2_A 90 WTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQ 169 (470)
T ss_dssp CTTSHHHHHHHHHHGGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHSCCCCGGGCSS
T ss_pred CCCchHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEHHHHHHHHHHHHHHHHHcCCcccccccCC
Confidence 799999999999999999999999999999999999999764335689999999999999999999999987652 22
Q ss_pred CchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 172 NSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
...+.+.+...+.........+ +++.++ +....++..++.+.+.+++.++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 221 (470)
T 2ij2_A 170 PHPFITSMVRALDEAMNKLQRA-NPDDPA--YDENKRQFQEDIKVMNDLVDKIIA 221 (470)
T ss_dssp CCHHHHHHHHHHHHHHHTC----CTTSGG--GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhh-hhHhhc--cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666555544332221111 111222 222334556666677777777665
No 5
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.93 E-value=3.8e-25 Score=180.46 Aligned_cols=165 Identities=12% Similarity=0.096 Sum_probs=127.8
Q ss_pred ccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchh-hhhh--
Q psy16355 6 SKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKST-EYAL-- 82 (228)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~-~~~~-- 82 (228)
.+||...++.+.+.+ ......++++..+.+|+++||||+++++|+.++|+++||+++++|+.+++.+.+++ ....
T Consensus 11 ~PGP~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~f~~r~~~~~~~~ 88 (487)
T 3n9y_A 11 IPSPGDNGWLNLYHF--WRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEGPNPERFLIPPWVA 88 (487)
T ss_dssp SCCSCSCHHHHHHHH--HHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCCSSCCCCCCHHHHH
T ss_pred CCCCCCCChhhHHHH--HhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCCCCCCCCCCcHHHH
Confidence 456655554432221 11122347889999999999999999999999999999999999997764443332 1111
Q ss_pred hHh--hhcccccccCCchhhhhhhhhcCc-CCHHHHHHhHHHHHHHHHHHHHHHhhhh----C-CCceehHHhHHHHHHH
Q psy16355 83 LDV--WLGTGLITSTGQKWHHRRKLLTPA-FHYNILETMLEPMQDTTDILVDRLSQEL----D-NSGFDVFPIMKLTTLD 154 (228)
Q Consensus 83 ~~~--~~g~~l~~~~g~~w~~~Rk~l~~~-f~~~~l~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~ 154 (228)
... ..+.|+++.+|+.|+++||+++++ |++++++.+.+.+.++++++++.|.+.. + +.++|+.+.+..+++|
T Consensus 89 ~~~~~~~~~~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~d 168 (487)
T 3n9y_A 89 YHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFE 168 (487)
T ss_dssp HHHHTTCCCCGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHH
T ss_pred HHHHccccCCCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHHHHHHH
Confidence 111 134688889999999999999995 9999999999999999999999997643 1 3479999999999999
Q ss_pred HHHHHhcCcccCCCCCCC
Q psy16355 155 IVCETTMGYDLGALKNQN 172 (228)
Q Consensus 155 vi~~~~fG~~~~~~~~~~ 172 (228)
+|+.++||.+++..++..
T Consensus 169 vi~~~~fG~~~~~~~~~~ 186 (487)
T 3n9y_A 169 SITNVIFGERQGMLEEVV 186 (487)
T ss_dssp HHHHHHHSSCCCTTSSSC
T ss_pred HHHHHHhcccccccCCCC
Confidence 999999999998766543
No 6
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.93 E-value=1.6e-25 Score=177.94 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=153.6
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchh-hhhhhHhhhccccc
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKST-EYALLDVWLGTGLI 92 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~-~~~~~~~~~g~~l~ 92 (228)
.+..+++||+..+. .+++..+.+|+++||||++ ++++.++++++||+++++++.++ .+.+++ .+.....+.|.+++
T Consensus 4 ~~~~p~iGnl~~~~-~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~-~f~~~~~~~~~~~~~~g~~l~ 80 (389)
T 1n97_A 4 LSLREAWPYLKDLQ-QDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE-GTTKATFQYRALSRLTGRGLL 80 (389)
T ss_dssp CCHHHHHHHHHHHH-HCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT-TEECCSHHHHHHHHHHCSSTT
T ss_pred cccccccccHHHHh-hChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC-CCCCChhHHHHHHHHhCCccc
Confidence 34567888888764 3678899999999999999 88999999999999999999877 555554 44444555678899
Q ss_pred ccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCC
Q psy16355 93 TSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQN 172 (228)
Q Consensus 93 ~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 172 (228)
+.+|+.|+++|++++++|++++++.+.+.+.++++++++.|. ++++|+.+.+..+++|+++.++||.+++ +
T Consensus 81 ~~~g~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~----~~~~dl~~~~~~~~~~vi~~~~fG~~~~--~--- 151 (389)
T 1n97_A 81 TDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWR----GEERDLDHEMLALSLRLLGRALFGKPLS--P--- 151 (389)
T ss_dssp TCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCC----SCCEEHHHHHHHHHHHHHHHHHHSSCCC--H---
T ss_pred cCCcHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHHHHcc----CCcCcHHHHHHHHHHHHHHHHHcCCcch--H---
Confidence 999999999999999999999999999999999999999886 4689999999999999999999999886 1
Q ss_pred chHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 173 SAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
++.+.+..+..........+ +.|+ +.+..++..++.+.+.+++.++|++
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~---~~~~--p~~~~~~~~~~~~~~~~~~~~~i~~ 200 (389)
T 1n97_A 152 -SLAEHALKALDRIMAQTRSP---LALL--DLAAEARFRKDRGALYREAEALIVH 200 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHCG---GGGG--CHHHHHHHHHHHHHHHHHHGGGTTS
T ss_pred -HHHHHHHHHHHHHHHHHhhH---HHhc--CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544332221111 1333 3233456667777888888777753
No 7
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.93 E-value=4.9e-26 Score=184.62 Aligned_cols=212 Identities=12% Similarity=0.105 Sum_probs=157.2
Q ss_pred cccccc--hhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhh-h
Q psy16355 5 ISKGGF--IHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTE-Y 80 (228)
Q Consensus 5 ~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~-~ 80 (228)
+++||. |.+..+.+++||++.+.. +++.++.+|+++|||||++++++.++|+|+||+++++++.++ ..+.+.+. .
T Consensus 6 lP~g~~~PP~~~~~lP~iG~~~~~~~-~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~ 84 (461)
T 3ld6_A 6 LPAGVKSPPYIFSPIPFLGHAIAFGK-SPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYS 84 (461)
T ss_dssp ----CCCCCBCCCSSTTTBTHHHHHH-CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHH
T ss_pred CccCCCCCCCCCCCcCeeeeHHHhhh-CHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchh
Confidence 455653 333445789999998764 789999999999999999999999999999999999999775 44555544 3
Q ss_pred hhhHhhhcccccc-cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHH
Q psy16355 81 ALLDVWLGTGLIT-STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCET 159 (228)
Q Consensus 81 ~~~~~~~g~~l~~-~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~ 159 (228)
......+|.++++ .+|+.|+++|++++++|+...++.+.+.+.+.++++++.|.+ ++.+|+.+.+..+++++++.+
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~ 161 (461)
T 3ld6_A 85 RLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGE---SGEKNVFEALSELIILTASHC 161 (461)
T ss_dssp HHHHHHHCTTSGGGSCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHGGGGCS---EEEEEHHHHHHHHHHHHHHHH
T ss_pred hhhhccCCCccccCCCcHHHHHHHHhccccccHHHHhhhhHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHHHH
Confidence 4455667887765 579999999999999999999999999999999999988876 567899999999999999999
Q ss_pred hcCcccCCCCCCCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 160 TMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 160 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
+||.+++.... +.+......+..... ...+.++.|+ +.+...+..++.+.+.+++.+.|++
T Consensus 162 ~fG~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~~ 222 (461)
T 3ld6_A 162 LHGKEIRSQLN--EKVAQLYADLDGGFS---HAAWLLPGWL--PLPSFRRRDRAHREIKDIFYKAIQK 222 (461)
T ss_dssp HTCHHHHHTCC--HHHHHHHHHHHTTSS---HHHHHSCTTS--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCcchhhhhh--hhhhhhhhhhhhhhh---hHHHhhhhhc--cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865432 333322222211100 0111222333 4556667777888888888877753
No 8
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.93 E-value=3.5e-25 Score=180.26 Aligned_cols=210 Identities=14% Similarity=0.173 Sum_probs=148.1
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHh-hhcccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDV-WLGTGLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~-~~g~~l~~ 93 (228)
+.+++||+..+...+++..+.+|+++||||+++++|+.++++++||+++++||.++ ..+.+.+....... ..|.|+++
T Consensus 17 ~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~~~~~l~~ 96 (476)
T 2fdv_A 17 PLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVF 96 (476)
T ss_dssp CBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHHHTTCSSSS
T ss_pred CCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhhcCCCCeEe
Confidence 35789999888656789999999999999999999999999999999999999654 44544332211111 23578888
Q ss_pred cCCchhhhhhhhhcCcCCHHHH--HHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCC
Q psy16355 94 STGQKWHHRRKLLTPAFHYNIL--ETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQ 171 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~ 171 (228)
++|+.|+++|++++++|++..+ +.+.+.+.++++++++.|.+. .++++|+.+.+..+++|+|+.++||.+++..+..
T Consensus 97 ~~g~~~~~~Rr~~~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~ 175 (476)
T 2fdv_A 97 SNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFLIDALRGT-GGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT-TTCCBCCHHHHHHHHHHHHHHHHHSSCCCTTCHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHhc-CCCccChHHHHHHHHHHHHHHHHcCCcCCCCCHH
Confidence 8999999999999999988766 789999999999999999763 2568999999999999999999999998743211
Q ss_pred CchHHHHHHHHHHHHHHHhhccccchhH-HhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 172 NSAYTQAVGIVAEISMKRFMLPWLHYDA-IFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..++.+.+..++.............+++ +..+....++..++.+.+.+++.++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 231 (476)
T 2fdv_A 176 FLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVE 231 (476)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhhhhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1223332333322111000000111222 111222345566677777777777765
No 9
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.93 E-value=2.8e-24 Score=174.00 Aligned_cols=159 Identities=20% Similarity=0.347 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHh-----hhccccccc-CCchhhhh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDV-----WLGTGLITS-TGQKWHHR 102 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~-----~~g~~l~~~-~g~~w~~~ 102 (228)
..++..+.+|+++||||+++++|+.++|+|+||++++++|.++.+..++..+..... ++|.|+++. +|+.|+++
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~~~ 89 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQ 89 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCTTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhccccccchhHHHHHHhhcccccCCCcccCCChHHHHHH
Confidence 357888999999999999999999999999999999999976544344444443322 245677765 79999999
Q ss_pred hhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHH
Q psy16355 103 RKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGI 181 (228)
Q Consensus 103 Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 181 (228)
||+++++|++++++.+.+.+.++++++++.+.+..+ ++++|+.+.+..+++|+|+.++||.+++..+....++.+.+..
T Consensus 90 Rr~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~ 169 (456)
T 3mdm_A 90 RRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQAVKL 169 (456)
T ss_dssp HHHHGGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHHHHHH
T ss_pred HhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHHHHHH
Confidence 999999999999999999999999999999987554 5689999999999999999999999998765444566666666
Q ss_pred HHHHHH
Q psy16355 182 VAEISM 187 (228)
Q Consensus 182 ~~~~~~ 187 (228)
+.....
T Consensus 170 ~~~~~~ 175 (456)
T 3mdm_A 170 MLEGIT 175 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655433
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.92 E-value=2.9e-25 Score=180.76 Aligned_cols=212 Identities=17% Similarity=0.255 Sum_probs=149.5
Q ss_pred cccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhh
Q psy16355 5 ISKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALL 83 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~ 83 (228)
+.+||. +.+++||+..+..++++..+.+|+++||||+++++|+.++|+|+||+++++||.++ ..+.+.+.....
T Consensus 11 ~pPgP~-----~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 1po5_A 11 LPPGPS-----PLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVV 85 (476)
T ss_dssp CCCCSC-----CBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGG
T ss_pred CCcCCC-----CCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 445554 35679999887556789999999999999999999999999999999999999654 445543322111
Q ss_pred Hh-hhcccccccCCchhhhhhhhhcCcCCHH--HHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHh
Q psy16355 84 DV-WLGTGLITSTGQKWHHRRKLLTPAFHYN--ILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETT 160 (228)
Q Consensus 84 ~~-~~g~~l~~~~g~~w~~~Rk~l~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~ 160 (228)
.. ..|.|+++++|+.|+++||++.++|++. .++.+.+.+.++++++++.|.+.. |+++|+.+.+..+++|+|+.++
T Consensus 86 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~-~~~~d~~~~~~~~~~~vi~~~~ 164 (476)
T 1po5_A 86 DPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSK-GALLDNTLLFHSITSNIICSIV 164 (476)
T ss_dssp CSCCSSCCCCCSSHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTT-TCCBCCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCceEecCCcHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHhcC-CCccCHHHHHHHHHHHHHHHHH
Confidence 11 1357888889999999999999999887 567889999999999999997642 5789999999999999999999
Q ss_pred cCcccCCCCCCCchHHHHHHHHHHHHHHHhhcc----ccchhHHh-hcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 161 MGYDLGALKNQNSAYTQAVGIVAEISMKRFMLP----WLHYDAIF-KRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 161 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
||.+++..+ .++....+.+..... ....+ ...++++. .+....++..++.+.+.+++.++|+
T Consensus 165 fG~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~~~~lp~~~~~~~~~~~~~~~~~~~~i~ 231 (476)
T 1po5_A 165 FGKRFDYKD---PVFLRLLDLFFQSFS-LISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVE 231 (476)
T ss_dssp HSSCCCTTC---HHHHHHHHHHHHHTT-TCCTTHHHHHHHTHHHHHTSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCC---HHHHHHHHHHHHHHh-hhcchhhHHHHhhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999887432 233333332222110 00001 11122211 1222235566677777777777765
No 11
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.92 E-value=3.2e-25 Score=181.30 Aligned_cols=207 Identities=10% Similarity=0.083 Sum_probs=147.3
Q ss_pred hhhhcccccccCc-HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhh--hcccc
Q psy16355 16 TKRKLGLLNIKLS-VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVW--LGTGL 91 (228)
Q Consensus 16 ~~~~~g~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~--~g~~l 91 (228)
+.+++||++.+.. +.++..+.+|+++||||+++++|+.++|+|+||++++++|.++ ..+.+++.......+ .+.|+
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~~~~~~~~gl 94 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGI 94 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHHHHTTTTCSS
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHHhccCCCCe
Confidence 5788999998754 3678999999999999999999999999999999999999776 445444433222222 24577
Q ss_pred cccC-CchhhhhhhhhcCcCCH--HHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 92 ITST-GQKWHHRRKLLTPAFHY--NILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 92 ~~~~-g~~w~~~Rk~l~~~f~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
++++ |+.|+.+||+++++|+. ..++.+.+.+.++++.+++.+.+. .++++|+...+..+++|+|+.++||.+++..
T Consensus 95 ~~~~~g~~wr~~Rr~~~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~ 173 (494)
T 3swz_A 95 AFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATH-NGQSIDISFPVFVAVTNVISLICFNTSYKNG 173 (494)
T ss_dssp SSSCSSHHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT-TTEEECCHHHHHHHHHHHHHHHHHSCCCCTT
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHcCCcCCCC
Confidence 7776 99999999999999974 446778999999999999998763 2678999999999999999999999988653
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhc--cccchhHHhh-cCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 169 KNQNSAYTQAVGIVAEISMKRFML--PWLHYDAIFK-RTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
+ +....+..+...+...... ....++|+.. +....+++.+..+.+.+++++++++
T Consensus 174 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~~~~~~~~~~~~~~~~~~~~~i~~ 231 (494)
T 3swz_A 174 D----PELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILEN 231 (494)
T ss_dssp C----THHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2223333333322222111 1111222211 3344556666777777777776653
No 12
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=180.60 Aligned_cols=208 Identities=10% Similarity=0.036 Sum_probs=135.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCC-chhhhhhhHhhhcccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHID-KSTEYALLDVWLGTGLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~-k~~~~~~~~~~~g~~l~~ 93 (228)
+.+++||+..+.. +++..+.+|+++||+||++++|+.++|+|+||+++++||.++ ..+. ++..+.......|.++++
T Consensus 16 ~~P~iG~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~~g~~l~~ 94 (507)
T 3pm0_A 16 AWPLIGNAAAVGQ-AAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSGGRSMAF 94 (507)
T ss_dssp ------------C-CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHHGGGGTCSSS
T ss_pred CCCeeCchhhcCc-cHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHhhcCCCceEE
Confidence 4578999988764 789999999999999999999999999999999999999665 4454 343333322224577765
Q ss_pred c-CCchhhhhhhhhcCcCCHHH------HHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCccc
Q psy16355 94 S-TGQKWHHRRKLLTPAFHYNI------LETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 94 ~-~g~~w~~~Rk~l~~~f~~~~------l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~ 165 (228)
+ +|+.|+++|++++++|+... ++.+.+.+.++++++++.+.+..+ ++++|+.+.+..+++|+++.++||.++
T Consensus 95 ~~~g~~w~~~R~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~ 174 (507)
T 3pm0_A 95 GHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRY 174 (507)
T ss_dssp SCSSHHHHHHHHHHHHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHHHHHHHHHccccC
Confidence 5 59999999999998765433 344889999999999999987543 678999999999999999999999998
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhhccccchhHHhh-cCc---hhHhHHHHHHHHHHHHHHHhh
Q psy16355 166 GALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFK-RTE---MGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~i~ 226 (228)
+..+.....+.+.+..+....... .....++|+.. +.+ ..+++.++.+.+.+++.++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (507)
T 3pm0_A 175 SHDDPEFRELLSHNEEFGRTVGAG--SLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFL 237 (507)
T ss_dssp CTTCHHHHHHTSCHHHHHHHHSTT--CCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcccc--hHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764311112222222222222111 11111222221 222 345666677777777766664
No 13
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.92 E-value=1.3e-24 Score=176.07 Aligned_cols=208 Identities=8% Similarity=0.060 Sum_probs=132.7
Q ss_pred CCcccccc-cchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchh
Q psy16355 1 MSEGISKG-GFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKST 78 (228)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~ 78 (228)
||.+.++| |. +.+++||+..+.. +++..+.+|+++||||+++++++.++++|+||+++++++.++ ..+.+.+
T Consensus 1 ~~~~~PPg~p~-----~~P~iG~~~~~~~-~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~ 74 (455)
T 2cib_A 1 MSAVALPRVSG-----GHDEHGHLEEFRT-DPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAK 74 (455)
T ss_dssp ----CCCBCSC-----CCBTTBTHHHHTT-CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTT
T ss_pred CCCCCCCCCCC-----CCCCccCHHHHhh-ChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCccc
Confidence 67777766 33 4567899887754 678899999999999999999999999999999999999764 3444444
Q ss_pred hhhhhHhhhcccccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHH
Q psy16355 79 EYALLDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCE 158 (228)
Q Consensus 79 ~~~~~~~~~g~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~ 158 (228)
.+.....++|.+++ .+|+.|+++|++++++|++++++.+.+.+.++++++++.|.+ ++++|+.+.+..+++++++.
T Consensus 75 ~~~~~~~~~g~~~~-~~~~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~~~~---~~~vd~~~~~~~~~~~vi~~ 150 (455)
T 2cib_A 75 AYPFMTPIFGEGVV-FDASPERRKEMLHNAALRGEQMKGHAATIEDQVRRMIADWGE---AGEIDLLDFFAELTIYTSSA 150 (455)
T ss_dssp SCGGGHHHHC---------------------CCHHHHHHHHHHHHHHHHHHHTTCCS---EEEEEHHHHHHHHHHHHHHH
T ss_pred chhHHHhhcCCccc-cCcHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHHHHHhCC---CCcEeHHHHHHHHHHHHHHH
Confidence 44444445666654 579999999999999999999999999999999999998765 46799999999999999999
Q ss_pred HhcCcccCCCCCCCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 159 TTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 159 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
++||.+++...+ .++.+.+..+.. .......+++|+ +.+..++..++.+.+.+++.++|+
T Consensus 151 ~~fG~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~p~l--~~~~~~~~~~~~~~~~~~~~~~i~ 210 (455)
T 2cib_A 151 CLIGKKFRDQLD--GRFAKLYHELER----GTDPLAYVDPYL--PIESFRRRDEARNGLVALVADIMN 210 (455)
T ss_dssp HHTCHHHHTTCC--HHHHHHHHHHHT----TCCGGGGTCTTC--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcchhhh--HHHHHHHHHHHh----hhhHHHHhcccC--CChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999865321 344444433321 111111112232 333445556666777777777665
No 14
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.92 E-value=9.5e-25 Score=177.97 Aligned_cols=217 Identities=16% Similarity=0.174 Sum_probs=147.3
Q ss_pred ccccccchhhhhhhhhcccccccCcHH--HHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhh
Q psy16355 4 GISKGGFIHNFQTKRKLGLLNIKLSVE--FFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEY 80 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~ 80 (228)
++.+||. +.+++|++..+.... ++..+.+|+++||||+++++|+.++++|+||+++++++.++ ..+.+.+..
T Consensus 12 ~lpPgP~-----~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~ 86 (481)
T 3czh_A 12 GFPPGPP-----GLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCL 86 (481)
T ss_dssp CCCCCCC-----CBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCC
T ss_pred CCCCCCC-----CCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCc
Confidence 4556665 356788887664433 78899999999999999999999999999999999999875 345443322
Q ss_pred hhhHhhhc-cccc-ccCCchhhhhhhhhcCcCCHHHH--HHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHH
Q psy16355 81 ALLDVWLG-TGLI-TSTGQKWHHRRKLLTPAFHYNIL--ETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIV 156 (228)
Q Consensus 81 ~~~~~~~g-~~l~-~~~g~~w~~~Rk~l~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi 156 (228)
.....+.+ .|++ ..+|+.|+++|++++++|++..+ +.+.+.+.++++.+++.|.+. .|+++|+.+.+..+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-~~~~~d~~~~~~~~~~~vi 165 (481)
T 3czh_A 87 PLFMKMTKMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEETKFFNDAIETY-KGRPFDFKQLITNAVSNIT 165 (481)
T ss_dssp HHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT-TTCCBCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCeEeCCCChHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-CCCCcCHHHHHHHHHHHHH
Confidence 22222333 4655 46799999999999999987654 568899999999999999763 2568999999999999999
Q ss_pred HHHhcCcccCCCCCCCchHHHHHHHHHHHHHHHhhccccchhHHhh-cCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 157 CETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFK-RTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 157 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
+.++||.+++..+....++.+.+..++.............++|+.. +.+..++..++.+.+.+++.++|+
T Consensus 166 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~~~~~~~~~~~~~~~~~~~~~i~ 236 (481)
T 3czh_A 166 NLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIE 236 (481)
T ss_dssp HHHHHSSCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886432111222223333332211000001111122211 223455666777777777777765
No 15
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.92 E-value=8e-26 Score=183.65 Aligned_cols=202 Identities=14% Similarity=0.147 Sum_probs=123.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHhhhc-cccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLG-TGLITS 94 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~~~g-~~l~~~ 94 (228)
+.+++||+..+.. +++.++.++++ ||||+++++++.++++|+||+++++++.++.+..+++.+.....+.| .++++.
T Consensus 30 ~~P~iG~~~~~~~-~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~~~~~~~~~~~~~~~~~g~~~l~~~ 107 (467)
T 3dbg_A 30 GVPLLGHGWRLAR-DPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNPDYHIAGPLWESLEGLLGKEGVATA 107 (467)
T ss_dssp CCSTTHHHHHHHH-CHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCTTC----------------------
T ss_pred CCCcccchHHhcc-CHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCcCcccccchHHHHHHhcCCCCcccC
Confidence 4678899887764 77888999988 99999999999999999999999999988744366655555555667 789899
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCch
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSA 174 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~ 174 (228)
+|+.|+++|++++++|++++++.+.+.+.++++++++.|.+ ++++|+.+.+..+++++++.++||.+++... ...
T Consensus 108 dg~~h~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~vi~~~~~g~~~~~~~--~~~ 182 (467)
T 3dbg_A 108 NGPLHRRQRRTIQPAFRLDAIPAYGPIMEEEAHALTERWQP---GKTVDATSESFRVAVRVAARCLLRGQYMDER--AER 182 (467)
T ss_dssp --------CGGGHHHHSTTTSTTTHHHHHHHHHHHHHHSCT---TSCEEHHHHHHHHHHHHHHHHHSCSSCCHHH--HHH
T ss_pred CcHHHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHhcc---CCcCcHHHHHHHHHHHHHHHHHhCCcccchh--HHH
Confidence 99999999999999999999999999999999999999976 6789999999999999999999998886411 133
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 175 YTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
+...+..+..........|+..+.++ +.+..++..++.+.+.+++.++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 232 (467)
T 3dbg_A 183 LCVALATVFRGMYRRMVVPLGPLYRL--PLPANRRFNDALADLHLLVDEIIA 232 (467)
T ss_dssp HHHHHHHHHHC--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhC--CChHhHHHHHHHHHHHHHHHHHHH
Confidence 44444443332222222222222222 333445556666677777766665
No 16
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.92 E-value=3.9e-25 Score=178.61 Aligned_cols=203 Identities=11% Similarity=0.142 Sum_probs=153.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcccccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGTGLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~~l~~ 93 (228)
+.+++||+..+.. +++..+.+|+++|| +||++++++.++|+++||+++++++.++ ..+.+++.+.....++|.|+++
T Consensus 11 ~~P~iG~~~~~~~-~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (450)
T 3gw9_A 11 TVPILGHIIQFGK-SPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVPVFGEGVAY 89 (450)
T ss_dssp CSTTTBTHHHHHH-CHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHHHHCTTSGG
T ss_pred CcchhccHHHHcc-CHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHHHhcCCccc
Confidence 4688999987754 78899999999999 9999999999999999999999999775 4555566666666778888776
Q ss_pred c-CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHH-HHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCC
Q psy16355 94 S-TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVD-RLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQ 171 (228)
Q Consensus 94 ~-~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~ 171 (228)
. +|+.|+++|++++++|++++++.+.+.+.++++++++ .|.+ +++++|+.+.+..+++++++.++||.+++...+
T Consensus 90 ~~~~~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~--~~~~vd~~~~~~~~~~~~i~~~~fG~~~~~~~~- 166 (450)
T 3gw9_A 90 AAPYPRMREQLNFLAEELTIAKFQNFVPAIQHEVRKFMAANWDK--DEGEINLLEDCSTMIINTACQCLFGEDLRKRLD- 166 (450)
T ss_dssp GSCHHHHHHHHHHHHHTTSGGGCTTHHHHHHHHHHHHHHHHSCS--SEEEEEHHHHHHHHHHHHHHHHHSCHHHHHHSC-
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHHHHHHHHcCcchhhhhh-
Confidence 4 6999999999999999999999999999999999998 6653 246799999999999999999999998865321
Q ss_pred CchHHHHHHHHHHHHHHHhhccccchhHHh-hcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 172 NSAYTQAVGIVAEISMKRFMLPWLHYDAIF-KRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..++.+.+..+. .........++|+. .+.+..++..++.+.+.+++.++|+
T Consensus 167 ~~~~~~~~~~~~----~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~i~ 218 (450)
T 3gw9_A 167 ARRFAQLLAKME----SSLIPAAVFLPILLKLPLPQSARCHEARTELQKILSEIII 218 (450)
T ss_dssp HHHHHHHHHHHH----HTCCGGGGTCGGGGGSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----hccccchhcccchhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 133333333321 11111111122221 1444555667777788888877765
No 17
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.91 E-value=5.1e-25 Score=179.34 Aligned_cols=212 Identities=16% Similarity=0.243 Sum_probs=143.6
Q ss_pred cccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhh
Q psy16355 5 ISKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALL 83 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~ 83 (228)
..+||. +.+++|++..+..++++..+.+|+++||||+++++|+.++|+++||+++++|+.++ ..+.+.+.....
T Consensus 12 ~pPgP~-----~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~ 86 (477)
T 1r9o_A 12 LPPGPT-----PLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLA 86 (477)
T ss_dssp CCCCSS-----SCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCC
T ss_pred CCCCCC-----CCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhh
Confidence 445554 35679999888667889999999999999999999999999999999999999654 445443321111
Q ss_pred Hh-hhcccccccCCchhhhhhhhhcCcCCHH--HHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHh
Q psy16355 84 DV-WLGTGLITSTGQKWHHRRKLLTPAFHYN--ILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETT 160 (228)
Q Consensus 84 ~~-~~g~~l~~~~g~~w~~~Rk~l~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~ 160 (228)
.. ..|.|+++++|+.|+++||++.++|++. .++.+.+.+.++++.+++.|.+.. ++++|+.+.+..+++|+|+.++
T Consensus 87 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~-~~~vd~~~~~~~~~~~vi~~~~ 165 (477)
T 1r9o_A 87 ERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTK-ASPCDPTFILGCAPCNVICSII 165 (477)
T ss_dssp CTTTCTTSSTTCCHHHHHHHHHHHHHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTT-TSCBCTHHHHHHHHHHHHHHHH
T ss_pred hhccCCCceEecCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC-CCccChHHHHHHHHHHHHHHHH
Confidence 11 2457888889999999999999999876 346689999999999999997642 5689999999999999999999
Q ss_pred cCcccCCCCCCCchHHHHHHHHHHHHHHHhhccc----cchhHHhh-cCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 161 MGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPW----LHYDAIFK-RTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 161 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
||.+++..+ .++....+.+...... ...++ ..++|+.. +....++..++.+.+.+++.++|+
T Consensus 166 fG~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~l~~~lp~~~~~~~~~~~~~~~~~~~~i~ 232 (477)
T 1r9o_A 166 FHKRFDYKD---QQFLNLMEKLNENIKI-LSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVK 232 (477)
T ss_dssp HSCCCCTTC---HHHHHHHHHHHHHHHH-HTCCBC-------CCCSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCCCCC---HHHHHHHHHHHHHHHh-hccchhHHHhhccHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999987432 2333333322222211 11111 11122111 112234566667777777777665
No 18
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=177.36 Aligned_cols=212 Identities=14% Similarity=0.147 Sum_probs=146.3
Q ss_pred ccc--cccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCC-chhh
Q psy16355 4 GIS--KGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHID-KSTE 79 (228)
Q Consensus 4 ~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~-k~~~ 79 (228)
+++ +||.. .+++|+++.+.. +++..+.+|+++||||+++++|+.++++++||+++++++.++ ..+. ++..
T Consensus 14 ~lp~~PgP~~-----~p~~G~~~~~~~-~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~ 87 (495)
T 2hi4_A 14 GLKSPPEPWG-----WPLLGHVLTLGK-NPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDL 87 (495)
T ss_dssp TCBCCCCCCC-----BTTTBTHHHHTT-CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCC
T ss_pred CCCCCCCCCC-----CcceeeHHhcCc-cHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCc
Confidence 455 56553 467888877654 678899999999999999999999999999999999999765 3444 3333
Q ss_pred hhhhHhh-hccccccc--CCchhhhhhhhhcCcCCHH---HH---H---HhHHHHHHHHHHHHHHHhhhhC-CCceehHH
Q psy16355 80 YALLDVW-LGTGLITS--TGQKWHHRRKLLTPAFHYN---IL---E---TMLEPMQDTTDILVDRLSQELD-NSGFDVFP 146 (228)
Q Consensus 80 ~~~~~~~-~g~~l~~~--~g~~w~~~Rk~l~~~f~~~---~l---~---~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 146 (228)
+ ....+ .|.|++++ +|+.|+++||+++++|+.. ++ + .+.+.+.++++++++.|.+... ++++|+.+
T Consensus 88 ~-~~~~~~~~~~l~~~~~~g~~w~~~Rr~~~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~ 166 (495)
T 2hi4_A 88 Y-TSTLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYN 166 (495)
T ss_dssp H-HHHTSTTSCCTTTSSCCSHHHHHHHHHHHHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHH
T ss_pred H-HHHHhcCCCCEEEcCCCChHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHH
Confidence 2 22222 24678877 5999999999999986542 22 1 6889999999999999976432 67899999
Q ss_pred hHHHHHHHHHHHHhcCcccCCCCCCCchHHHH---HHHHHHHHHHHhhccccchhHHhh-cCchhHhHHHHHHHHHHHHH
Q psy16355 147 IMKLTTLDIVCETTMGYDLGALKNQNSAYTQA---VGIVAEISMKRFMLPWLHYDAIFK-RTEMGKTYYRELEVMKKFTL 222 (228)
Q Consensus 147 ~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 222 (228)
.+..+++|+|+.++||.+++..+ .++... .+.+...... ......++|+.. +.+..++..++.+.+.+++.
T Consensus 167 ~~~~~~~dvi~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~lp~~~~~~~~~~~~~~~~~~~ 241 (495)
T 2hi4_A 167 QVVVSVANVIGAMCFGQHFPESS---DEMLSLVKNTHEFVETASS--GNPLDFFPILRYLPNPALQRFKAFNQRFLWFLQ 241 (495)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTC---HHHHHHHTTTHHHHTTSST--TCGGGTCGGGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHHHhccc--chHHHHhHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886432 223222 2222211100 011111222211 33345566777777777777
Q ss_pred HHhhc
Q psy16355 223 SYSEL 227 (228)
Q Consensus 223 ~~i~~ 227 (228)
++|++
T Consensus 242 ~~i~~ 246 (495)
T 2hi4_A 242 KTVQE 246 (495)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 19
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.90 E-value=4.4e-23 Score=168.88 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=145.5
Q ss_pred hhhhcccccccCc---HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhh--Hhhhccc
Q psy16355 16 TKRKLGLLNIKLS---VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALL--DVWLGTG 90 (228)
Q Consensus 16 ~~~~~g~~~~~~~---~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~--~~~~g~~ 90 (228)
+.+++||++.+.. ...+..+.+|+++||||+++++|+.++|+++||++++++|.++.+..++...... ....|.|
T Consensus 52 ~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~~~~~r~~~~~~~~~~~~~~~~ 131 (503)
T 3s79_A 52 YCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHNHYSSRFGSKLGLQCIGMHEKG 131 (503)
T ss_dssp CCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSGGGCCCCCCHHHHHHHTCTTSS
T ss_pred CCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcCCCCCcchhhhhhhhhccCCCc
Confidence 4567888876543 2345678899999999999999999999999999999999765444443222111 1223567
Q ss_pred ccc-cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHHHHHHhcCcccCCC
Q psy16355 91 LIT-STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCETTMGYDLGAL 168 (228)
Q Consensus 91 l~~-~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~ 168 (228)
+++ .+|+.|+++||+++++|+..+++.+.+.+.++++++++.|.+..+ ++++|+.+.++.+++|+++.++||.+++.
T Consensus 132 ~~~~~~g~~w~~~Rr~~~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~- 210 (503)
T 3s79_A 132 IIFNNNPELWKTTRPFFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTSNTLFLRIPLDE- 210 (503)
T ss_dssp STTCCCHHHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHHHHHHHTCCCCCH-
T ss_pred eeeCCCccHHHHHHHhhhHhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHHHHHHHcCcccCc-
Confidence 655 458999999999999999999999999999999999998876543 66899999999999999999999988742
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 169 KNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
.++...+...+.........+. ++..+....++..++.+.+.+++.++|+
T Consensus 211 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 260 (503)
T 3s79_A 211 ----SAIVVKIQGYFDAWQALLIKPD----IFFKISWLYKKYEKSVKDLKDAIEVLIA 260 (503)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCH----HHHHSGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHhcCcH----HHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444333222121 1111212235566777777777777665
No 20
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.90 E-value=3.9e-25 Score=180.75 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=139.1
Q ss_pred ccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCch-hhhhhhHhhhcc-cccccC-Cch
Q psy16355 23 LNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKS-TEYALLDVWLGT-GLITST-GQK 98 (228)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~-~~~~~~~~~~g~-~l~~~~-g~~ 98 (228)
+.++..++++..+.+|+++||||+++++|+.++|+|+||++++++|.++ ..+.++ ..+.......|. |+++++ |+.
T Consensus 37 l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~l~~~~~g~~ 116 (496)
T 3qz1_A 37 FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLL 116 (496)
T ss_dssp SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTTTSCTTCCCSSSSCCSHH
T ss_pred ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchHHHhcCCCCceEECCCCHH
Confidence 4555556789999999999999999999999999999999999999776 444443 333222222344 899999 999
Q ss_pred hhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCchHHHH
Q psy16355 99 WHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQA 178 (228)
Q Consensus 99 w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 178 (228)
|+++||+++++|+++.++.+.+.+.++++++++.|.+. .|+++|+.+.+..+++|+|+.++||. ..+.....+.+.
T Consensus 117 w~~~Rr~~~~~f~~~~~~~~~~~i~~~~~~l~~~l~~~-~~~~vd~~~~~~~~~~dvi~~~~fG~---~~~~~~~~~~~~ 192 (496)
T 3qz1_A 117 WKAHKKLTRSALLLGTRSSMEPWVDQLTQEFCERMRVQ-AGAPVTIQKEFSLLTCSIICYLTFGN---KEDTLVHAFHDC 192 (496)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHTHHHHHHTTTTSTTC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHhhHHHHHHHHHHHHHHHHHhc-CCCccCHHHHHHHHHHHHHHHHhcCC---CCChHHHHHHHH
Confidence 99999999999997777789999999999999999762 36789999999999999999999998 111000122222
Q ss_pred HHHHHHHHHH---HhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 179 VGIVAEISMK---RFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 179 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
+..++..... .....+++..++ +.+..++..++.+.+.+++.++|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~P~l~~l--p~~~~~~~~~~~~~~~~~~~~~i~~ 242 (496)
T 3qz1_A 193 VQDLMKTWDHWSIQILDMVPFLRFF--PNPGLWRLKQAIENRDHMVEKQLRR 242 (496)
T ss_dssp HHTTTTTTSSHHHHHHHHCGGGCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHhHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111100 011111112222 3345566777788888888777653
No 21
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.89 E-value=5.8e-23 Score=165.87 Aligned_cols=192 Identities=16% Similarity=0.137 Sum_probs=140.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhhhhHhhhcc-cccc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYALLDVWLGT-GLIT 93 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~~~~~~~g~-~l~~ 93 (228)
+.+++|++..+.. +++ .+.+++++||||+++++++.+.++++||+++++++.++ ..+. +........++|. ++++
T Consensus 19 ~~P~iG~~~~~~~-~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~-~~~~~~~~~~~g~~~l~~ 95 (444)
T 2ve3_A 19 GLPWLGETLNFLN-DGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQ-ATWPLSTRILLGPNALAT 95 (444)
T ss_dssp CBTTTBTHHHHHH-CTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEE-EECCHHHHHHHCTTSGGG
T ss_pred CCCccccHHHHhc-CcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccc-cchhHHHHHHhCcccccc
Confidence 3567888876543 345 77899999999999998888899999999999999876 3333 2222233445575 8888
Q ss_pred cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCCCc
Q psy16355 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNS 173 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~ 173 (228)
.+|+.|+++|++++++|++++++.+.+.+.++++++++.|.+ ++++|+.+.+..+++|+++.++|| +....+ .
T Consensus 96 ~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~---~~~vd~~~~~~~~~~~vi~~~~fG-~~~~~~---~ 168 (444)
T 2ve3_A 96 QMGEIHRSRRKILYQAFLPRTLDSYLPKMDGIVQGYLEQWGK---ANEVIWYPQLRRMTFDVAATLFMG-EKVSQN---P 168 (444)
T ss_dssp CCHHHHHHHHHHHHGGGCHHHHHTTHHHHHHHHHHHHHHHHH---SSEEEHHHHHHHHHHHHHHHHHTC-HHHHSC---T
T ss_pred CCchHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhcC---CCcEeHHHHHHHHHHHHHHHHHcC-CCcccH---H
Confidence 899999999999999999999999999999999999999975 678999999999999999999999 432221 3
Q ss_pred hHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 174 AYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
++.+.+....... ...+. ++ +....++..++.+.+.+++.++|+
T Consensus 169 ~~~~~~~~~~~~~---~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~i~ 212 (444)
T 2ve3_A 169 QLFPWFETYIQGL---FSLPI----PL--PNTLFGKSQRARALLLAELEKIIK 212 (444)
T ss_dssp THHHHHHHHHHHH---SSCCC----CS--TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcCCc----cC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332211 11111 11 222234556666777777777665
No 22
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.89 E-value=2e-23 Score=169.19 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=153.4
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCCCchhhhh-hhHhhhccccc
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHIDKSTEYA-LLDVWLGTGLI 92 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~~k~~~~~-~~~~~~g~~l~ 92 (228)
.+.+++||+..+. .+++.++.+|+++||||+++++++.+.++|++|+++++++.++ ..+.++..+. ....++|.|++
T Consensus 18 ~~lP~iG~l~~~~-~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~g~g~~ 96 (461)
T 3i3k_A 18 SPIPFLGHAIAFG-KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVA 96 (461)
T ss_dssp CSSTTTBTHHHHH-HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHHCTTSG
T ss_pred CCCCccccHHhhc-cCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhhhhhcCCeee
Confidence 4568899998876 4788999999999999999999999999999999999999875 3445544443 34556788887
Q ss_pred cc-CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCCCCCC
Q psy16355 93 TS-TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQ 171 (228)
Q Consensus 93 ~~-~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~~ 171 (228)
+. +|+.|+.+||++.++|+++.++.+.+.+.++++++++.|.+ ++.+|+.+.+..+++++++.++||.++.....
T Consensus 97 ~~~~g~~w~~~Rr~~~~~f~~~~l~~~~~~~~~~~~~ll~~l~~---~~~~dl~~~~~~~~~~~~~~~~~G~~~~~~~~- 172 (461)
T 3i3k_A 97 YDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGE---SGEKNVFEALSELIILTASHCLHGKEIRSQLN- 172 (461)
T ss_dssp GGSCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHGGGGCS---EEEEEHHHHHHHHHHHHHHHHHTCHHHHHTCC-
T ss_pred eCCCcHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHHHHhhh---cCCcCHHHHHHHHHHHHHHHHHccHhhhhHHH-
Confidence 76 59999999999999999999999999999999999998876 45689999999999999999999988754321
Q ss_pred CchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 172 NSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+.+.+..+.... ....+.++.|+ +.+..++..++.+.+.+++.++|++
T Consensus 173 -~~~~~~~~~~~~~~---~~~~~~~P~~l--~~~~~~~~~~~~~~~~~~~~~~i~~ 222 (461)
T 3i3k_A 173 -EKVAQLYADLDGGF---SHAAWLLPGWL--PLPSFRRRDRAHREIKDIFYKAIQK 222 (461)
T ss_dssp -HHHHHHHHHHHTTS---SHHHHHSCTTS--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcc---ccchhhccccc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333222110 00111223344 4455666777788888888877753
No 23
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.89 E-value=1.9e-23 Score=169.94 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=121.6
Q ss_pred cccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC-CCC-Cchhhh--
Q psy16355 5 ISKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST-EHI-DKSTEY-- 80 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~-~~~-~k~~~~-- 80 (228)
+++||. +.+++||++++..++++..+.+|+++|||||++++|+.++|+|+||+++++||.++ ..+ +++...
T Consensus 11 LPPGP~-----~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 11 LPPGPL-----PLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp CCCCSC-----CBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCC-----CcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 666765 45789999988777889999999999999999999999999999999999999775 333 333221
Q ss_pred hhh-Hhhhccccccc-CCchhhhhhhhhcCcCCHHHHHH--hHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHH
Q psy16355 81 ALL-DVWLGTGLITS-TGQKWHHRRKLLTPAFHYNILET--MLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIV 156 (228)
Q Consensus 81 ~~~-~~~~g~~l~~~-~g~~w~~~Rk~l~~~f~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi 156 (228)
..+ ....+.+++++ +|+.|+++|+++.+.|+...+.. +.+.+......+.+.+.... ++.+|+.+.+..+++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHS-GRPFRPNGLLDKAVSNVI 164 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTT-TCCBCTHHHHHHHHHHHH
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHH
Confidence 111 11123455555 59999999999999998766543 44555566666666555432 568999999999999999
Q ss_pred HHHhcCcccCCCC
Q psy16355 157 CETTMGYDLGALK 169 (228)
Q Consensus 157 ~~~~fG~~~~~~~ 169 (228)
+.++||.+++..+
T Consensus 165 ~~~~fg~~~~~~~ 177 (479)
T 3tbg_A 165 ASLTCGRRFEYDD 177 (479)
T ss_dssp HHHHHSCCCCTTC
T ss_pred HHhhcCCcccccc
Confidence 9999999997764
No 24
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.86 E-value=1.7e-21 Score=156.06 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=119.5
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhh-hhhHhhhc-cccccc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEY-ALLDVWLG-TGLITS 94 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~-~~~~~~~g-~~l~~~ 94 (228)
+++|++..+.. +++.++.+++++|| ||+++++++.+++++++|++++.++....+..++..+ .....++| .++++.
T Consensus 9 P~lG~~~~~~~-~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 87 (417)
T 1izo_A 9 KSLDNSLTLLK-EGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGM 87 (417)
T ss_dssp CCTTHHHHHHH-HGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTTCGGGC
T ss_pred CccchHHHHhh-CcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhcccccccccccccchhhhhccccceeec
Confidence 67899887754 78889999999998 9999998888899999999998655432222222222 22334566 578888
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCC
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGA 167 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~ 167 (228)
+|+.|+++|++++++|++++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++++|+.+ ||.+++.
T Consensus 88 dg~~h~~~R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~---~~~~dl~~~~~~~~~~vi~~~-~G~~~~~ 156 (417)
T 1izo_A 88 DGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEK---ADEVVLFEEAKEILCRVACYW-AGVPLKE 156 (417)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTT---SSEEEHHHHHHHHHHHHHHHH-HTCCCCT
T ss_pred CChHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhc---CCCeeHHHHHHHHHHHHHHHH-cCCCCCc
Confidence 99999999999999999999999999999999999999977 678999999999999999998 5988754
No 25
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.85 E-value=2.9e-21 Score=154.61 Aligned_cols=144 Identities=14% Similarity=0.210 Sum_probs=119.0
Q ss_pred hhcccccccCcHHHHHHHHHHHHHc-CCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh-h-hhhHhhhc-ccccc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNY-KGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE-Y-ALLDVWLG-TGLIT 93 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~-~-~~~~~~~g-~~l~~ 93 (228)
+++|++..+.. +++.++.+++++| |||+++.+++.+++++++|++++ ++.+.+.+.+... . .....++| .++++
T Consensus 8 P~iG~~~~~~~-~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~~~f~~~~~~~~~~~~~~~g~~~l~~ 85 (415)
T 3awm_A 8 KGPDETLSLLA-DPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDTTRFEREGAMPVAIQKTLLGQGGVQG 85 (415)
T ss_dssp -CCCCHHHHHH-STTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCTTTEECTTCSCHHHHTTTSCSSSGGG
T ss_pred CccchHHHHHh-ChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcccccccccccchhhhhhccCCcceee
Confidence 68999887643 6788999999999 79999998888899999999987 6665533443322 1 12233456 57888
Q ss_pred cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccCC
Q psy16355 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLGA 167 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~ 167 (228)
.+|+.|+++|++++++|++++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++++++.+ ||.+.+.
T Consensus 86 ~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~~~~---~~~vdl~~~~~~~~~~vi~~~-~G~~~~~ 155 (415)
T 3awm_A 86 LDGETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAVPGWTR---KGEIVFYDELHEPLTRAVCAW-AGVPLPD 155 (415)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH---HSEEEHHHHHHHHHHHHHHHH-HTCCCCG
T ss_pred cCcHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcc---CCcEeHHHHHHHHHHHHHHHH-cCCCCCc
Confidence 899999999999999999999999999999999999999976 578999999999999999999 7987653
No 26
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.85 E-value=5.8e-21 Score=155.97 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=143.6
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCC-CchhhhhhhHhhhccccc-cc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHI-DKSTEYALLDVWLGTGLI-TS 94 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~-~k~~~~~~~~~~~g~~l~-~~ 94 (228)
.+++||+..+.. +++.++.+++++||||+++++++.++++|++|+++++++.+++.+ ..+........++|.+.+ ..
T Consensus 22 lPliG~~~~~~~-~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3v8d_A 22 IPYLGCALQFGA-NPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFALSAKAFGHRSIDPM 100 (491)
T ss_dssp ESSTTTTGGGTC-CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHHHHHHHTCCCCCGG
T ss_pred cceeccHHHHhc-CHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHHHHHhcCCcccccc
Confidence 488999998865 789999999999999999999999999999999999999776522 233333445566776544 45
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC----CCceehHHhHHHHHHHHHHHHhcCcccCCCCC
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD----NSGFDVFPIMKLTTLDIVCETTMGYDLGALKN 170 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~vi~~~~fG~~~~~~~~ 170 (228)
+|+.|+++|+.+.++|++++++.+.+.+.+++.++++.+..... ....++.+.+..+++++++..+||.+....+.
T Consensus 101 ~g~~~~~~Rr~~~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~fG~~~~~~~~ 180 (491)
T 3v8d_A 101 DGNTTENINDTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTRRDT 180 (491)
T ss_dssp GSSBCCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHHHHHHHHHHCBCCSCGGG
T ss_pred cchhHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHHHHHHHHHcCccccccch
Confidence 79999999999999999999999999999999999986533221 34689999999999999999999998764321
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHh
Q psy16355 171 QNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYS 225 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 225 (228)
....+.+.++.+..... . .+. +..++ +....++..++.+.+.+++.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~-~--~~~-l~~~~--p~~~~~~~~~a~~~l~~~~~~~~ 229 (491)
T 3v8d_A 181 QKAHILNNLDNFKQFDK-V--FPA-LVAGL--PIHMFRTAHNAREKLAESLRHEN 229 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-H--HHH-HHTTC--CGGGCHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhHHHHHHHHHHHH-H--HHH-HHhcC--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333322221111 0 110 01111 33445666777777666655444
No 27
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.83 E-value=3.4e-20 Score=149.33 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=116.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhhh--h-hh--Hhhhcc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTEY--A-LL--DVWLGT 89 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~~--~-~~--~~~~g~ 89 (228)
+.+++|++......+++..+.++ ++||||+++++ ++.++++++||++++++|.++. +.+.+.. . .. ....+.
T Consensus 33 ~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~ 110 (436)
T 2cd8_A 33 PVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADPR-FSKDWRNSTTPLTEAEAALNH 110 (436)
T ss_dssp -CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCTT-EECCGGGCSSCCCTTGGGTCC
T ss_pred ccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCCC-Ccccccccccccccccccccc
Confidence 34556776522234668888999 99999999998 7788999999999999998763 4443321 1 11 022457
Q ss_pred cccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 90 GLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 90 ~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
++++.+|+.|+++|++++++|++++++.+.+.+.++++++++.|.+. .++++|+.+.+ ..+++++|+. +||.+.+
T Consensus 111 ~l~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~vd~~~~~~~~~~~~vi~~-~~G~~~~ 186 (436)
T 2cd8_A 111 NMLESDPPRHTRLRKLVAREFTMRRVELLRPRVQEIVDGLVDAMLAA-PDGRADLMESLAWPLPITVISE-LLGVPEP 186 (436)
T ss_dssp SGGGCCTTHHHHHHHHHGGGSSHHHHHTTHHHHHHHHHHHHHHHHTC-TTSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred cccccCchHHHHHHHHhHHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHHHHHH-HhCCCHH
Confidence 88888999999999999999999999999999999999999999852 25689999876 6899999998 6998653
No 28
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.83 E-value=1.4e-19 Score=145.73 Aligned_cols=180 Identities=9% Similarity=-0.009 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhhcCCCCCchhh--hh-hhHhh--hcccccccCC
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILSSTEHIDKSTE--YA-LLDVW--LGTGLITSTG 96 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~~~~~~~k~~~--~~-~~~~~--~g~~l~~~~g 96 (228)
.+++..+.+|. +||||++++++ +.++++|+||++++++|.+++.+.+.+. +. ....+ .+.++++.+|
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~dg 122 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHPDIFSSYPNITINDQTPELAEYFGSMIVLDD 122 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCTTTEECSSCCSSSCCCHHHHHHHHGGGGCCT
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCcccccCccccccCccccchhhhccccccCCc
Confidence 47888999985 79999999986 6689999999999999987643444331 11 12222 3678888999
Q ss_pred chhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccCCCCCCCchH
Q psy16355 97 QKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLGALKNQNSAY 175 (228)
Q Consensus 97 ~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~ 175 (228)
+.|+++|++++++|++++++.+.+.+.++++++++.|.+..+++++|+.+.+ ..+++++|+.+ ||.+.+.. +.+
T Consensus 123 ~~h~~~R~~l~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~----~~~ 197 (435)
T 2wm5_A 123 PRHQRLRSIVSRAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDM-MGIPKADH----QRI 197 (435)
T ss_dssp THHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEHHHHTTTHHHHHHHHHH-HTCCGGGH----HHH
T ss_pred HHHHHHHHHhHHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEehHHHHHHHHHHHHHHHH-cCCCHHHH----HHH
Confidence 9999999999999999999999999999999999999874324489998755 89999999999 99877431 334
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 176 TQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
.+....++. . ..|. | .+..++..++.+.+.+++.++|++
T Consensus 198 ~~~~~~~~~----~-~~p~----~----~~~~~~~~~~~~~~~~~~~~~i~~ 236 (435)
T 2wm5_A 198 FHWTNVILG----F-GDPD----L----ATDFDEFMQVSADIGAYATALAED 236 (435)
T ss_dssp HHHHHHHHH----T-TCTT----S----CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----c-CCcc----h----hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 433332221 1 1111 1 122345666777777777777653
No 29
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.83 E-value=3.9e-20 Score=148.68 Aligned_cols=187 Identities=10% Similarity=0.024 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhh-hhh---hH-h-h---hc------cccc
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTE-YAL---LD-V-W---LG------TGLI 92 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~-~~~---~~-~-~---~g------~~l~ 92 (228)
.+++..+.++.+ ||||+++++ |+.++++|+++++++++|.+.+.+.+++. ... .. . + .| .+++
T Consensus 25 ~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~~fs~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 103 (428)
T 1cpt_A 25 EVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQPGLFSNAEGSEILYDQNNEAFMRSISGGCPHVIDSLT 103 (428)
T ss_dssp HHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCTTTEESSSSCSSCCCHHHHHHHHHHTTTSSCSSCCGG
T ss_pred CCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCchhccCccccccCCcccccchhccccccccccccccc
Confidence 578888888876 799999998 67899999999999999977643433322 111 11 1 2 33 4688
Q ss_pred ccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccCCCCCC
Q psy16355 93 TSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLGALKNQ 171 (228)
Q Consensus 93 ~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~~~~~~ 171 (228)
+.+|+.|+++||+++++|++++++.+.+.++++++++++.|.+. ++++|+.. ....+++++|+.+ ||.+.+..
T Consensus 104 ~~~g~~~~~~Rr~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~--- 177 (428)
T 1cpt_A 104 SMDPPTHTAYRGLTLNWFQPASIRKLEENIRRIAQASVQRLLDF--DGECDFMTDCALYYPLHVVMTA-LGVPEDDE--- 177 (428)
T ss_dssp GCCTTHHHHHHHHHHTTSSHHHHGGGHHHHHHHHHHHHHHHHTS--SSEEEHHHHTTTTHHHHHHHHH-HTCCGGGH---
T ss_pred cCChHHHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeehHHHHHhhhHHHHHHHH-cCCCHhHH---
Confidence 88999999999999999999999999999999999999999872 36799975 5568999999999 99876421
Q ss_pred CchHHHHHHHHHHHHHHHhhccccchhHHhhc-CchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 172 NSAYTQAVGIVAEISMKRFMLPWLHYDAIFKR-TEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
.++....+.+....... +..++|+..+ ....++..++.+.+.+++.++|++
T Consensus 178 -~~~~~~~~~~~~~~~~~----~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (428)
T 1cpt_A 178 -PLMLKLTQDFFGVHEPD----EQAVAAPRQSADEAARRFHETIATFYDYFNGFTVD 229 (428)
T ss_dssp -HHHHHHHHTTTCC--------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhccccc----ccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23333222221110000 0011111111 122345667777788888777753
No 30
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.82 E-value=1e-19 Score=144.27 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCC----cCeEEecChhHHHHHhhcCCCCCchhhhhhh--HhhhcccccccCCchhhhhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGP----YPKVYFQTPDCTQAILSSTEHIDKSTEYALL--DVWLGTGLITSTGQKWHHRR 103 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~----~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~--~~~~g~~l~~~~g~~w~~~R 103 (228)
+++..+.+| ++||||+++++++ .++++|+||++++++|.+.+.+.+++.+... ....+.+++..+|+.|+++|
T Consensus 13 ~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R 91 (384)
T 3oo3_A 13 DPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILADHERFSSMRPVDDEADRALLPGILQAYDPPDHTRLR 91 (384)
T ss_dssp EECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHHCTTTEECSCCCC-----CCCTTCGGGCCTTHHHHHH
T ss_pred ChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHhCchhccCCccccccccccccccccccCCChhHHHHH
Confidence 567888888 5999999999886 8999999999999999765455554432211 12234567778899999999
Q ss_pred hhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCcccC
Q psy16355 104 KLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 104 k~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~~ 166 (228)
++++++|++++++.+.+.+.+.++++++.|.+ +|+++|+.+.+...+.++++..+||.+.+
T Consensus 92 ~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~~d~~~~~~~~~~~~v~~~~~G~~~~ 152 (384)
T 3oo3_A 92 RTVAPAYSARRMERLRPRIEEIVEECLDDFES--VGAPVDFVRHAAWPIPAYIACEFLGVPRD 152 (384)
T ss_dssp HHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHH--SCSSEEHHHHTTTHHHHHHHHHHHTCCGG
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999975 26789999999988877777888998764
No 31
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.81 E-value=3e-19 Score=142.61 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh--hhh---h-------HhhhcccccccCCc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE--YAL---L-------DVWLGTGLITSTGQ 97 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~--~~~---~-------~~~~g~~l~~~~g~ 97 (228)
+++..+.+| ++||||+++++++.++++|+||++++++|.++.. .+++. +.. . ....+.++++.+|+
T Consensus 16 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 93 (408)
T 1odo_A 16 DHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDV-SKDARAHWPAFGEVVGTWPLALWVAVENMFTAYGP 93 (408)
T ss_dssp THHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTE-ESCHHHHCTTHHHHTTTCTTTHHHHCCSGGGCCHH
T ss_pred ChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccCCh
Confidence 678899999 9999999999888889999999999999987643 33321 110 0 11134678888999
Q ss_pred hhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHH-HHHHHHHHHHhcCcccC
Q psy16355 98 KWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMK-LTTLDIVCETTMGYDLG 166 (228)
Q Consensus 98 ~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~vi~~~~fG~~~~ 166 (228)
.|+++||+++++|++++++.+.+.+.++++++++.|.+..+++++|+.+.+. .+++++|+. +||.+.+
T Consensus 94 ~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 162 (408)
T 1odo_A 94 NHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGH-LMGVPQD 162 (408)
T ss_dssp HHHHHHHTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhHHHHHHH-HhCCCHH
Confidence 9999999999999999999999999999999999998542267899998876 599999996 6998653
No 32
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.81 E-value=1.8e-19 Score=143.79 Aligned_cols=131 Identities=14% Similarity=0.046 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCCeeEEe----e-CC-cCeEEecChhHHHHHh-hcCCCCCchhh--hh--hhH-h-hhcccccccCC
Q psy16355 30 EFFKFVSEQCNNYKGNFILW----L-GP-YPKVYFQTPDCTQAIL-SSTEHIDKSTE--YA--LLD-V-WLGTGLITSTG 96 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~----~-~~-~~~vvv~~p~~~k~il-~~~~~~~k~~~--~~--~~~-~-~~g~~l~~~~g 96 (228)
+++..+.+| ++||||++++ + ++ .++++++||++++++| .+..+ .+.+. +. .+. . ..+.++++.+|
T Consensus 25 ~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g 102 (406)
T 1ued_A 25 DPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEHF-TTRPQFTQSKSGAHVEAQFVGQISTYDP 102 (406)
T ss_dssp EECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSSE-ECCCCC---------CGGGTTCGGGCCT
T ss_pred CcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCccc-cccccccccccccccccccccccccCCC
Confidence 457788899 9999999999 6 78 8999999999999999 65543 33221 11 111 1 13457888899
Q ss_pred chhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHH-HHHHHHHHHhcCccc
Q psy16355 97 QKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKL-TTLDIVCETTMGYDL 165 (228)
Q Consensus 97 ~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~vi~~~~fG~~~ 165 (228)
+.|+++|++++++|++++++.+.+.+.++++++++.|.+ +|+++|+.+.+.. +++++|+. +||.+.
T Consensus 103 ~~~~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~g~~~d~~~~~~~~~~~~vi~~-~~G~~~ 169 (406)
T 1ued_A 103 PEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEA--EGPSADLQGLFADPVGAHALCE-LLGIPR 169 (406)
T ss_dssp THHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHH--HCTTEEHHHHTHHHHHHHHHHH-HHTCCH
T ss_pred HHHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCeeHHHHHHHHhHHHHHHH-HcCCCH
Confidence 999999999999999999999999999999999999975 2678999988765 99999994 799765
No 33
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.81 E-value=2.7e-19 Score=142.68 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh------hhhhHhhhcccccccCCchhhhh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE------YALLDVWLGTGLITSTGQKWHHR 102 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~------~~~~~~~~g~~l~~~~g~~w~~~ 102 (228)
.+++..+.+| ++||||+++++++.+++++++|++++++|.+.+.+.+.+. ........+.++++.+|+.|+++
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~~ 91 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDARFKVRTPLPESSTKYQDLSHVQNQMMLFQNQPDHRRL 91 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCTTEECCCSSCTTCCTTHHHHHHHHTSGGGCCTTHHHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCcccccCcccccccccccchhhhhhcchhhcCCchHHHH
Confidence 3678888887 6899999999999999999999999999987654444331 11223446788999999999999
Q ss_pred hhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccC
Q psy16355 103 RKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 103 Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~ 166 (228)
||+++++|++++++.+.+.+.++++++++.|.+ ++.+|+.. ....+++++++.+ ||.+.+
T Consensus 92 Rr~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 152 (404)
T 3ejb_B 92 RTLASGAFTPRTTESYQPYIIETVHHLLDQVQG---KKKMEVISDFAFPLASFVIANI-IGVPEE 152 (404)
T ss_dssp HHHHHGGGSHHHHHTTHHHHHHHHHHHHHTTTT---TSEEEHHHHTHHHHHHHHHHHH-HTCCGG
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhh---cCCcchHHHHHHHHHHHHHHHH-cCCCHH
Confidence 999999999999999999999999999999986 67889754 5567999999995 897653
No 34
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.81 E-value=3.5e-19 Score=142.11 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhh--h----------hh-Hh---hhcccccc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEY--A----------LL-DV---WLGTGLIT 93 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~--~----------~~-~~---~~g~~l~~ 93 (228)
+++..+.+| ++||||+++++++.+++++++|++++++|.++. +.+++.+ . .+ .. ..+.++++
T Consensus 15 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (404)
T 1z8o_A 15 DWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDLR-LSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATNMGT 92 (404)
T ss_dssp SHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCTT-EECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSSGGG
T ss_pred CcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCCC-ccccccccccccccccccccccccchhhhccccccc
Confidence 678899999 999999999999899999999999999998763 3443321 1 12 22 24678888
Q ss_pred cCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccCCCCCCC
Q psy16355 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLGALKNQN 172 (228)
Q Consensus 94 ~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~ 172 (228)
.+|+.|+++||+++++|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..+++++|+.+ ||.+.+..
T Consensus 93 ~~g~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~---- 164 (404)
T 1z8o_A 93 SDPPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGD---SGVVDIVDRFAHPLPIKVICEL-LGVDEKYR---- 164 (404)
T ss_dssp CCTTHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHHHHHTSCS---SSEEEHHHHTTTHHHHHHHHHH-TTCCGGGT----
T ss_pred CCCcHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhhhh---cCCcchHHHHhHHHHHHHHHHH-hCCCHHHH----
Confidence 899999999999999999999999999999999999999876 6789998654 78999999985 99876432
Q ss_pred chHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 173 SAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..+......++. . .+ + ..++..++.+.+.+++.++|+
T Consensus 165 ~~~~~~~~~~~~-----~-~~---------p--~~~~~~~~~~~~~~~~~~~i~ 201 (404)
T 1z8o_A 165 GEFGRWSSEILV-----M-DP---------E--RAEQRGQAAREVVNFILDLVE 201 (404)
T ss_dssp TTHHHHHHHHHC-----C-CG---------G--GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----c-CC---------h--hHHHHHHHHHHHHHHHHHHHH
Confidence 344443333221 0 00 1 134455666666666666654
No 35
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.80 E-value=6.1e-19 Score=143.91 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=117.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCC-CchhhhhhhHhhhccccc-cc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHI-DKSTEYALLDVWLGTGLI-TS 94 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~-~k~~~~~~~~~~~g~~l~-~~ 94 (228)
.+++||+..+.. +++..+.+|+++||+|+++++|+.++++|+||+++++++.+...+ .++.........+|.+++ ..
T Consensus 22 ~P~iG~~~~~~~-~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3dax_A 22 IPYLGCALQFGA-NPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPM 100 (491)
T ss_dssp ESCTTTTGGGTC-CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHHHHHHHHTCCCCCGG
T ss_pred ccchhhHHHHhh-CHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHHHHHHHcCCCccccc
Confidence 588999988765 678899999999999999999999999999999999999765422 222223334445677766 67
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhh----CCCceehHHhHHHHHHHHHHHHhcCcccCC
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQEL----DNSGFDVFPIMKLTTLDIVCETTMGYDLGA 167 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~vi~~~~fG~~~~~ 167 (228)
+|+.|+++|+.+.++|+.++++.+.+.+.+.+.++++...... ....+++...+..+++++++.++||.+.+.
T Consensus 101 ~g~~w~~~r~~~~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~fG~~~~~ 177 (491)
T 3dax_A 101 DGNTTENINDTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTR 177 (491)
T ss_dssp GTSBCCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHHHHHHHHCBCSTT
T ss_pred chhHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHHhHHHHcCccccc
Confidence 7999999999999999999999998888888877776553321 123578899999999999999999987754
No 36
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.80 E-value=6.7e-19 Score=140.17 Aligned_cols=173 Identities=11% Similarity=0.030 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHhhhcccccccCCchhhhhhhhhcC
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKLLTP 108 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~~~g~~l~~~~g~~w~~~Rk~l~~ 108 (228)
.+++..+.++++ ||||+++ +. ++++|++|++++++|.+.+.+.+++... .....+.++++.+|+.|+++|+++++
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~~--~~-~~vvv~~~~~v~~vl~~~~~f~~~~~~~-~~~~~~~~l~~~~g~~h~~~R~~~~~ 92 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFRD--RN-GLAAASTYQAVIDAERQPELFSNAGGIR-PDQPALPMMIDMDDPAHLLRRKLVNA 92 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEEC--TT-CCEEECSHHHHHHHHTCTTTEESTTCSS-TTSCCCSSGGGCCTTHHHHHHHHHGG
T ss_pred cChhHHHHHHHh-cCCeeec--CC-CeEEEecHHHHHHHHhCcccccCccccC-CcccccccccccCchHHHHHHHHhhh
Confidence 467889999887 9999977 44 7999999999999998765444443221 12234577888899999999999999
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehH-HhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHHHHHHHH
Q psy16355 109 AFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF-PIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISM 187 (228)
Q Consensus 109 ~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+|++++++.+.+.+.+.++++++.|.+ ++++|+. +.+..+++++|+.+ ||.+.+.. +++......+...
T Consensus 93 ~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~----~~~~~~~~~~~~~-- 162 (398)
T 2xkr_A 93 GFTRKRVKDKEASIAALCDTLIDAVCE---RGECDFVRDLAAPLPMAVIGDM-LGVRPEQR----DMFLRWSDDLVTF-- 162 (398)
T ss_dssp GSCHHHHHTTHHHHHHHHHHHHHTTTT---TSEEEHHHHTTTHHHHHHHHHH-HTCCGGGH----HHHHHHHHHHHHH--
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHhhhh---cCCccHHHHHHHHHHHHHHHHH-hCCCHHHH----HHHHHHHHHHHhc--
Confidence 999999999999999999999999976 4579998 55678999999998 99876421 3344433333221
Q ss_pred HHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 188 KRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..+... + ...++..++.+.+.+++.++|+
T Consensus 163 ---~~~~~~------p-~~~~~~~~~~~~~~~~~~~~i~ 191 (398)
T 2xkr_A 163 ---LSSHVS------Q-EDFQITMDAFAAYNDFTRATIA 191 (398)
T ss_dssp ---HTSCCC------H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCcccc------h-hhHHHHHHHHHHHHHHHHHHHH
Confidence 112111 1 1234556666677777777665
No 37
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.80 E-value=5.1e-19 Score=143.01 Aligned_cols=187 Identities=8% Similarity=-0.022 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHcCCee--EEe-eCCcCeEEecChhHHHHHhhcCCCCCchhhhhh---------hHhh------hcccc
Q psy16355 30 EFFKFVSEQCNNYKGNF--ILW-LGPYPKVYFQTPDCTQAILSSTEHIDKSTEYAL---------LDVW------LGTGL 91 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~--~~~-~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~---------~~~~------~g~~l 91 (228)
+++..+.++ ++||||+ ++. +|+.++++|++++++++++.+...+++.+.... .... .++++
T Consensus 46 ~p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 46 PLLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDNATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCTTTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred CchHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCcccccCCCccccccccccccccccccccccccccCc
Confidence 378888888 7799999 888 778899999999999999987644443321110 0111 23578
Q ss_pred cccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccCCCCC
Q psy16355 92 ITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLGALKN 170 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 170 (228)
+..+|+.|+++||+++++|++++++.+.+.+.++++++++.|.+. ++++|+...+ ..+++++|+.+ ||.+.+..
T Consensus 125 ~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~~dl~~~~~~~~~~~vi~~l-~G~~~~~~-- 199 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLTQDWFMPKNLARLDGEIRKIANEAIDRMLGA--GEEGDFMALVAAPYPLHVVMQI-LGVPPEDE-- 199 (450)
T ss_dssp GGCCTTHHHHHHHHHHTTTSHHHHGGGHHHHHHHHHHHHHHHHHT--CSEEEHHHHTTTHHHHHHHHHH-TTCCGGGH--
T ss_pred ccCCCHHHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEeeHHHHHHHHHHHHHHHH-cCCChhHH--
Confidence 889999999999999999999999999999999999999999863 5789988777 79999999996 89665321
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 171 QNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+.+..+.+...... .....+.|+..+....++..++.+.+.+++.++|++
T Consensus 200 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 251 (450)
T 3tkt_A 200 --PKMLFLTQQMFGGQDE---DMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAE 251 (450)
T ss_dssp --HHHHHHHHTTSCCC-------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhccccc---hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333222211000 001111122112233456677777788888777753
No 38
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.79 E-value=3.2e-19 Score=142.45 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhh---hhh---hHh---hhcccccccCCchh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTE---YAL---LDV---WLGTGLITSTGQKW 99 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~---~~~---~~~---~~g~~l~~~~g~~w 99 (228)
+++..+.+| ++||||+++++ |+.++++|+||++++++|.++.+ .+.+. +.. +.. ..+.++++.+|+.|
T Consensus 25 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h 102 (408)
T 3abb_A 25 QPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPRL-SSDWGHPDFPVVVRRTEDRGGLAFPLIGVDDPVH 102 (408)
T ss_dssp SCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTTE-ECCTTSTTCCCCC---------CCTTTTCCTTHH
T ss_pred CchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCCc-ccccccccccccccCCccccccccccccCCchHH
Confidence 567888999 89999999997 88899999999999999987543 22211 111 111 12357888899999
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHH-HHHHHHHHHHhcCcccC
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMK-LTTLDIVCETTMGYDLG 166 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~vi~~~~fG~~~~ 166 (228)
+++|++++++|++++++.+.+.+.++++++++.|.+ +|+++|+...+. .+++++|+. +||.+.+
T Consensus 103 ~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 167 (408)
T 3abb_A 103 ARQRRMLIPSFGVKRMNAIRPRLQSLVDRLLDDMLA--KGPGADLVSAFALPVPSVAICE-LLGVPYG 167 (408)
T ss_dssp HHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHH--TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 999999999999999999999999999999999985 256899998776 599999997 6998763
No 39
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.79 E-value=1.2e-18 Score=139.85 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHcCCeeEEeeC--CcCeEEecChhHHHHHhhcCCCCCchh---------hhhh-------hHhhhcccc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLG--PYPKVYFQTPDCTQAILSSTEHIDKST---------EYAL-------LDVWLGTGL 91 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~--~~~~vvv~~p~~~k~il~~~~~~~k~~---------~~~~-------~~~~~g~~l 91 (228)
+++..+.++. +||||+++++| +.++++|+||++++++|.++. +.+++ .... ...+.|.++
T Consensus 21 ~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (425)
T 2z3t_A 21 DPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNRR-LGRNARVASGDTDTAPVPIPTEHRALRTVVENWL 98 (425)
T ss_dssp CCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCTT-EESSCCCC---------------CHHHHHHTTCG
T ss_pred ChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCCC-cccccccccccccccccccccccccccccccccc
Confidence 5677888875 59999999987 678999999999999998763 33332 1111 223334788
Q ss_pred cccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccCCCCC
Q psy16355 92 ITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLGALKN 170 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~~~~~ 170 (228)
++++|+.|+++||+++++|++++++.+.+.+.+.++++++.|.+ .+++|+.. ....+++++|+.+ ||.+.+..
T Consensus 99 ~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~dl~~~~~~~~~~~vi~~~-~G~~~~~~-- 172 (425)
T 2z3t_A 99 VFLDPPHHTELRSLLTTEFSPSIVTGLRPRIAELASALLDRLRA---QRRPDLVEGFAAPLPILVISAL-LGIPEEDH-- 172 (425)
T ss_dssp GGCCHHHHHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHHHHTT---SSSCBHHHHTTTHHHHHHHHHH-HTCCGGGH--
T ss_pred ccCCchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHH-hCCCHHHH--
Confidence 88999999999999999999999999999999999999999976 34799877 4578999999998 99876421
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 171 QNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+....+.+.. . ...++ + +....++..++.+.+.+++.++|++
T Consensus 173 --~~~~~~~~~~~~----~-~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~i~~ 216 (425)
T 2z3t_A 173 --TWLRANAVALQE----A-STTRA----R--DGRGYARAEAASQEFTRYFRREVDR 216 (425)
T ss_dssp --HHHHHHHHHHHT----T-CTTCC----C-----HHHHHHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHh----h-ccccC----C--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332222211 0 01000 0 1122345667777788888777753
No 40
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.79 E-value=6.3e-19 Score=140.87 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhh-----h--hHhhhcccccccCCchhhhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYA-----L--LDVWLGTGLITSTGQKWHHR 102 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~-----~--~~~~~g~~l~~~~g~~w~~~ 102 (228)
+++..+.+| ++||||+++++++.+.++|++|++++++|.+++ +.+++... . +....+.++++.+|+.|+++
T Consensus 21 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~~ 98 (411)
T 3a4g_A 21 NPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR-LSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRL 98 (411)
T ss_dssp CCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT-EESCGGGGSCGGGCTTCCSCSSCCGGGCCTTHHHHH
T ss_pred CchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC-cccccccccccccccccCcccccccccCCchHHHHH
Confidence 568888999 999999999999889999999999999998765 44443221 0 11224577888899999999
Q ss_pred hhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehH-HhHHHHHHHHHHHHhcCcccC
Q psy16355 103 RKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF-PIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 103 Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~vi~~~~fG~~~~ 166 (228)
||+++++|++++++.+.+.+.++++++++.|.+ ++++|+. +....+++++|+.+ ||.+.+
T Consensus 99 R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~vd~~~~~~~~~~~~vi~~~-~G~~~~ 159 (411)
T 3a4g_A 99 RKLVGRSFTVRRMNELEPRITEIADGLLAGLPT---DGPVDLMREYAFQIPVQVICEL-LGVPAE 159 (411)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCS---SSCEEHHHHTTTTHHHHHHHHH-HTCCGG
T ss_pred HHHhhhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHhHHHHHHHH-hCCCHH
Confidence 999999999999999999999999999999976 4689996 45578999999975 898764
No 41
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.79 E-value=2e-18 Score=137.98 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchh--hhhh-----------hHhhh-ccccccc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKST--EYAL-----------LDVWL-GTGLITS 94 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~--~~~~-----------~~~~~-g~~l~~~ 94 (228)
+++..+.+| ++||||+++++ ++.++++++||++++++|.++.. .+++ +... +.... +.++++.
T Consensus 18 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (411)
T 1gwi_A 18 DLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRL-VKDINVWGAWRRGEIPADWPLIGLANPGRSMLTV 95 (411)
T ss_dssp CHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTTE-ECCGGGCHHHHTTCSCTTCTTHHHHSCCSSGGGC
T ss_pred ChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCcc-ccCcccccccccccCCcccchhhhhccccccccC
Confidence 578888999 99999999997 88899999999999999987643 3322 1110 00012 5678888
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHH-HHHHHHHHHHhcCcccC
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMK-LTTLDIVCETTMGYDLG 166 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~vi~~~~fG~~~~ 166 (228)
+|+.|+++|++++++|++++++.+.+.+.++++++++.|.+ +++++|+...+. .+++++|+. +||.+.+
T Consensus 96 ~g~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 165 (411)
T 1gwi_A 96 DGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPA--DGGVVDLKAAFAYPLPMYVVAD-LMGIEEA 165 (411)
T ss_dssp CHHHHHHHHHHHTTTSCHHHHHTTHHHHHHHHHHHHHTSCC--SCCCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcchHHHHhhHHHHHHHHH-HhCCCHH
Confidence 99999999999999999999999999999999999999973 267899988776 599999996 6998753
No 42
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.78 E-value=8.7e-19 Score=140.43 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchh-----hhh-h--hHhh--h-cccccccCCch
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKST-----EYA-L--LDVW--L-GTGLITSTGQK 98 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~-----~~~-~--~~~~--~-g~~l~~~~g~~ 98 (228)
+++..+.+| ++||||++ + ++.+++++++|++++++|.+++ +.+++ .+. . ...+ . +.++++.+|+.
T Consensus 27 ~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 102 (419)
T 1q5d_A 27 DPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER-FAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPED 102 (419)
T ss_dssp CCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT-EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSCHHH
T ss_pred ChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC-ccccccccccccccccccchhhhhcccccccCCchH
Confidence 568888888 78999999 5 7778999999999999998776 54443 122 1 1122 2 66788889999
Q ss_pred hhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccCCCCCCCchHHH
Q psy16355 99 WHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLGALKNQNSAYTQ 177 (228)
Q Consensus 99 w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 177 (228)
|+++|++++++|++++++.+.+.+.++++++++.|.+ ++++|+.. .+..+++++|+.+ ||.+.+.. +.+..
T Consensus 103 h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~----~~~~~ 174 (419)
T 1q5d_A 103 HARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSG---QEEFDVVRDYAEGIPMRAISAL-LKVPAECD----EKFRR 174 (419)
T ss_dssp HHHHHHHHGGGGSHHHHGGGHHHHHHHHHHHHHHHTT---SSCEETTTTTGGGSHHHHHHHH-TTCCGGGH----HHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHH-hCCCHHHH----HHHHH
Confidence 9999999999999999999999999999999999986 45899875 4589999999998 99876421 33444
Q ss_pred HHHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 178 AVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
..+.+... . .+.. +++ .....++..++.+.+.+++.++|++
T Consensus 175 ~~~~~~~~----~-~~~~-~P~---~~~~~~~~~~~~~~~~~~~~~~i~~ 215 (419)
T 1q5d_A 175 FGSATARA----L-GVGL-VPR---VDEETKTLVASVTEGLALLHGVLDE 215 (419)
T ss_dssp HHHHHHHH----T-TTTT-SSC---CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----c-cccc-ccC---ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333221 1 1110 000 1122345667777777777777653
No 43
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.78 E-value=1.9e-18 Score=138.21 Aligned_cols=133 Identities=9% Similarity=0.119 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHc-CCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchh--hhhhhH----hh--hcccccccCCchh
Q psy16355 30 EFFKFVSEQCNNY-KGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKST--EYALLD----VW--LGTGLITSTGQKW 99 (228)
Q Consensus 30 ~~~~~~~~~~~~y-G~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~--~~~~~~----~~--~g~~l~~~~g~~w 99 (228)
+++..+.+| ++| |||+++++ ++.++++|+||++++++|.++++..++. .+.... .+ .+.++++.+|+.|
T Consensus 25 ~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h 103 (412)
T 2zbx_A 25 QLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPRLSSNRTDDNFPATSPRFEAVRESPQAFIGLDPPEH 103 (412)
T ss_dssp SCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTTEECCTTSTTSCCCSGGGC----CCCCGGGCCTTHH
T ss_pred ChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcccccCcccccccccccccccccccccccccCCcHHH
Confidence 567788899 788 99999997 8889999999999999998754322221 111110 01 2457888899999
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHH-HHHHHHHHHHhcCcccC
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMK-LTTLDIVCETTMGYDLG 166 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~vi~~~~fG~~~~ 166 (228)
+++|++++++|++++++.+.+.+.++++++++.|.+. |+++|+...+. .+++++++. +||.+.+
T Consensus 104 ~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 168 (412)
T 2zbx_A 104 GTRRRMTISEFTVKRIKGMRPEVEEVVHGFLDEMLAA--GPTADLVSQFALPVPSMVICR-LLGVPYA 168 (412)
T ss_dssp HHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999999999999999999999999999999999752 56899998776 599999997 6998763
No 44
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.78 E-value=1.9e-18 Score=138.44 Aligned_cols=178 Identities=10% Similarity=0.154 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhH----------hhhcccccccCCchh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLD----------VWLGTGLITSTGQKW 99 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~----------~~~g~~l~~~~g~~w 99 (228)
+++.++.+| ++||||+++.+| .++|++|++++++|.+...+...+...... ...+.++++.+|+.|
T Consensus 30 ~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 105 (418)
T 3r9b_A 30 DPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHPSSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLDPPDH 105 (418)
T ss_dssp CCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCTTEECCGGGCHHHHHHHC---------CCCGGGCCTTHH
T ss_pred CchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCcccccCcccccccccccccccccccccccchhhcCCchH
Confidence 567888877 688999998766 999999999999998765443333222111 223567889999999
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccCCCCCCCchHHHH
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLGALKNQNSAYTQA 178 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 178 (228)
+++||+++++|++++++.+.+.+.++++++++ +.+ ++.+|+.. ....+++++++. +||.+.+.. ..+...
T Consensus 106 ~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~-l~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~----~~~~~~ 176 (418)
T 3r9b_A 106 TRLRGLVSKAFAPRVIKRLEPEITALVDQLLD-AVD---GPEFNLIDNLAYPLPVAVICR-LLGVPIEDE----PKFSRA 176 (418)
T ss_dssp HHHHHHHHGGGSHHHHGGGHHHHHHHHHHHHH-TCC---SSEEEHHHHTTTHHHHHHHHH-HHTCCGGGH----HHHHHH
T ss_pred HHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHh-hhc---cCCeehHHHHhCcCCHHHHHH-HcCCCHHHH----HHHHHH
Confidence 99999999999999999999999999999999 765 56899754 557999999999 899876431 223332
Q ss_pred HHHHHHHHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 179 VGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
...+.. ...+.....++ +....++..++.+.+.+++.++|++
T Consensus 177 ~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~~ 218 (418)
T 3r9b_A 177 SALLAA-----ALDPFLALTGE--TSDLFDEQMKAGMWLRDYLRALIDE 218 (418)
T ss_dssp HHHHHH-----TTSCHHHHHSS--CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----hcCcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 11111111111 3344566778888888888887764
No 45
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.78 E-value=2.1e-18 Score=138.10 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhhcCCCCCch--hhhhhhHh------hhcccccccCCchh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILSSTEHIDKS--TEYALLDV------WLGTGLITSTGQKW 99 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~~~~~~~k~--~~~~~~~~------~~g~~l~~~~g~~w 99 (228)
.+++..+.+|+++ |||++++++ +.++++|++|++++++|.+..+..++ +.+..... ..+.++++.+|+.|
T Consensus 29 ~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 107 (417)
T 3tyw_A 29 FAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDPRVSADIRRPGFPALGEGEQEAGARFRPFIRTDAPEH 107 (417)
T ss_dssp TSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCTTEECCSSSTTCCCSSTTTSTTSSSCCCGGGCCHHHH
T ss_pred cCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCCCcccCCccccccccccccccccccccchhhcCCcHH
Confidence 3668888999988 999999987 47899999999999999876322221 11111111 24568888999999
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
+++|++++++|++++++.+.+.+.++++++++.|.+. |+++|+...+ ..+++++++.+ ||.+.+
T Consensus 108 ~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--g~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 172 (417)
T 3tyw_A 108 TRYRRMLLPAFTVRRVRAMRPAVQARVDEILDGMLAA--GGPVDLVSAYANAVSTSVICEL-LGIPRH 172 (417)
T ss_dssp HHHHHHHGGGGCHHHHHHTHHHHHHHHHHHHHHHHHH--CSSEEHHHHTHHHHHHHHHHHH-HTCCTT
T ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHhh--CCCcchHHHHHHHHHHHHHHHH-hCCCHH
Confidence 9999999999999999999999999999999999873 6689999987 68999999997 898775
No 46
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.78 E-value=5.4e-19 Score=140.96 Aligned_cols=132 Identities=10% Similarity=0.050 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchh---hhh---hhHh-hhcccccccCCchhhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKST---EYA---LLDV-WLGTGLITSTGQKWHH 101 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~---~~~---~~~~-~~g~~l~~~~g~~w~~ 101 (228)
+++..+.+| ++||||+++++ |+.+.++++||++++++|.++. +.+++ ++. .+.. ..+.++++.+|+.|++
T Consensus 20 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~ 97 (403)
T 3aba_A 20 LPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDSS-FSVQVPHALHTQDGVVTQKPGRGSLLWQDEPEHTS 97 (403)
T ss_dssp SCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCTT-EESCCSCCTTSSSCCCCCCCCTTCCTTCCTTHHHH
T ss_pred ChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCCC-cccccccccccccccccccccccccccCCchhHHH
Confidence 456778888 89999999997 8899999999999999998764 33331 111 1212 1356788889999999
Q ss_pred hhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 102 RRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 102 ~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
+||+++++|++++++.+.+.+.++++++++.|.+ +++++|+...+ ..+++++|+. +||.+.+
T Consensus 98 ~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 160 (403)
T 3aba_A 98 DRKLLAKEFTVRRMQALRPNIQRIVDEHLDAIEA--RGGPVDLVKTFANAVPSMVISD-LFGVPVE 160 (403)
T ss_dssp HHHHHHHHSCHHHHHTTHHHHHHHHHHHHHHHHH--HCSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999999999999999999999999999999984 16789998655 5799999998 6998763
No 47
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.78 E-value=6.9e-19 Score=140.90 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhhh-hh---hHh-hhcccccccCCchhhhhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTEY-AL---LDV-WLGTGLITSTGQKWHHRR 103 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~~-~~---~~~-~~g~~l~~~~g~~w~~~R 103 (228)
+++..+.+| ++||||+++++ ++.++++|+||++++++|.++. +.+++.+ .. +.. ..+.++++.+|+.|+++|
T Consensus 38 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~~~R 115 (417)
T 2y5n_A 38 TLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDGR-FVRGPSMTRDEPRTRPEMVKGGLLSMDPPEHSRLR 115 (417)
T ss_dssp CCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCTT-EESGGGGTSCCCBSSSSCCCCSGGGCCTTHHHHHH
T ss_pred CchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCCC-cccCccccccccccCcccccccCccCCchHHHHHH
Confidence 567888899 89999999997 8899999999999999998764 3444332 11 112 135678888999999999
Q ss_pred hhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCC-ceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 104 KLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNS-GFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 104 k~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
|+++++|++++++.+.+.+.++++++++.|.+ ++ ++|+...+ ..+++++|+. +||.+.+
T Consensus 116 ~~l~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 176 (417)
T 2y5n_A 116 RLVVKAFTARRAESLRPRAREIAHELVDQMAA---TGQPADLVAMFARQLPVRVICE-LLGVPSA 176 (417)
T ss_dssp HHHHHHSCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeeHHHHHHHHhHHHHHHH-HcCCCHH
Confidence 99999999999999999999999999999985 45 89998765 5799999998 6898763
No 48
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.78 E-value=5.7e-18 Score=135.04 Aligned_cols=151 Identities=13% Similarity=0.021 Sum_probs=114.1
Q ss_pred ccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhhcCC---CCCchhhhh
Q psy16355 6 SKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILSSTE---HIDKSTEYA 81 (228)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~~~~---~~~k~~~~~ 81 (228)
++||.. .+++|++.. +++..+.+|. +||||+++.++ +.+.++|+++++++++|.++. ...++....
T Consensus 3 pPGp~~-----~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~ 72 (404)
T 1jfb_A 3 ASGAPS-----FPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPE 72 (404)
T ss_dssp ---CCB-----SSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCC
T ss_pred CCCCCC-----CCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcc
Confidence 456643 367788765 4466777775 69999999874 556778999999999998763 112222111
Q ss_pred h----hHhhhc-ccccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHHH
Q psy16355 82 L----LDVWLG-TGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDI 155 (228)
Q Consensus 82 ~----~~~~~g-~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~v 155 (228)
. .....+ .++++++|+.|+++||+++++|++++++.+.+.+.++++++++.|.+... ++++|+...+...+.++
T Consensus 73 ~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~ 152 (404)
T 1jfb_A 73 LSASGKQAAKAKPTFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSY 152 (404)
T ss_dssp CSHHHHHHTTSCCCGGGCCTTHHHHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHH
T ss_pred ccccccchhcccCcccccCchhHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Confidence 0 011223 56888899999999999999999999999999999999999999987532 46899999999999999
Q ss_pred HHHHhcCcccC
Q psy16355 156 VCETTMGYDLG 166 (228)
Q Consensus 156 i~~~~fG~~~~ 166 (228)
++..+||.+.+
T Consensus 153 i~~~~~G~~~~ 163 (404)
T 1jfb_A 153 IIYTLLGVPFN 163 (404)
T ss_dssp HHHHHHTCCGG
T ss_pred HHHHHcCCCHH
Confidence 99999998764
No 49
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.78 E-value=1.6e-18 Score=138.49 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCC--cCeEEecChhHHHHHhhcCCCCCchhhhh----hhHhhh---cccccccCCchhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGP--YPKVYFQTPDCTQAILSSTEHIDKSTEYA----LLDVWL---GTGLITSTGQKWH 100 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~--~~~vvv~~p~~~k~il~~~~~~~k~~~~~----~~~~~~---g~~l~~~~g~~w~ 100 (228)
+++..+.+++ +||||+++.+++ .+.+++++|+++++||.+. .+.+++.+. .+..+. +.++++.+|+.|+
T Consensus 28 ~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~-~f~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 105 (411)
T 2dkk_A 28 EFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP-RFGRAEVTQRQITRLAPHFKPRPGSLAFADQPDHN 105 (411)
T ss_dssp CCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT-TEESGGGGGSCBCBSSSCCCCCTTCSTTCCTTHHH
T ss_pred cccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC-CcccCCCCCCCccccccchhccccccccCCchHHH
Confidence 3457788886 899999998764 7899999999999999875 344444332 122222 5678888999999
Q ss_pred hhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHH-HHHHHHHHHHhcCcccC
Q psy16355 101 HRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMK-LTTLDIVCETTMGYDLG 166 (228)
Q Consensus 101 ~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~vi~~~~fG~~~~ 166 (228)
++|++++++|++++++.+.+.+.+.++++++.|.+. |+++|+...+. .+++++|+. +||.+.+
T Consensus 106 ~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--g~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 169 (411)
T 2dkk_A 106 RLRRAVAGAFTVGATKRLRPRAQEILDGLVDGILAE--GPPADLVERVLEPFPIAVVSE-VMGVPAA 169 (411)
T ss_dssp HHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCEEHHHHTTTHHHHHHHHH-HHTCCSS
T ss_pred HHHHHhhHhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 999999999999999999999999999999999863 55899987665 799999998 5998763
No 50
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.77 E-value=1.9e-18 Score=137.59 Aligned_cols=133 Identities=10% Similarity=-0.034 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHc--CCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhh--hHhhhcccccccCCchhhhhhh
Q psy16355 29 VEFFKFVSEQCNNY--KGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYAL--LDVWLGTGLITSTGQKWHHRRK 104 (228)
Q Consensus 29 ~~~~~~~~~~~~~y--G~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~--~~~~~g~~l~~~~g~~w~~~Rk 104 (228)
.+++..+.+|+++| |||+++++++ +.++|+||+++++++.+.+.+.+.+.... .....+.++++.+|+.|+++|+
T Consensus 19 ~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~ 97 (398)
T 4fb2_A 19 GTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQNTKAFSNKGVTFPRYETGEFELMMAGQDDPVHKKYRQ 97 (398)
T ss_dssp SSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHTCCSSEEGGGCSSSCC----CCCTTTTCCTTHHHHHHH
T ss_pred cChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHhChhhccCCcccccCCCCcccccCcccCCchHHHHHHH
Confidence 36789999999999 9999999876 59999999999999966555555443221 1121224567788999999999
Q ss_pred hhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccC
Q psy16355 105 LLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 105 ~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~ 166 (228)
+++++|++++++.+.+.+.++++++++.|.+ ++.+|+.. ....+++++++. +||.+.+
T Consensus 98 ~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 156 (398)
T 4fb2_A 98 LVAKPFSPEATDLFTEQLRQSTNDLIDARIE---LGEGDAATWLANEIPARLTAI-LLGLPPE 156 (398)
T ss_dssp HHHTTTCHHHHHTTHHHHHHHHHHHHHTTTT---TTEEEHCCCCCTTHHHHHHHH-HTTSCGG
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999999999999999999999999999877 45788754 457899999999 6897653
No 51
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.77 E-value=3.8e-18 Score=136.01 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhhh-hhhHh-hhccc--ccccCC------ch
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTEY-ALLDV-WLGTG--LITSTG------QK 98 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~~-~~~~~-~~g~~--l~~~~g------~~ 98 (228)
+++..+.+| ++||||+++++ ++.+.++|+||+++++++.++. +.+.+.+ ..... ..+.+ +++.+| +.
T Consensus 27 ~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 104 (404)
T 2xbk_A 27 KLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDER-IGRTHPDPPSAAQYVRSPFLDLLISDADAESGRRQ 104 (404)
T ss_dssp BCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCTT-EESBCSSGGGSCCSSCCHHHHTTCBCSCHHHHHHH
T ss_pred CccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCCC-CCCCccccccCCcccccccccceeeCCCCCCCCch
Confidence 567788899 89999999997 7889999999999999998764 3333322 11222 13455 888889 99
Q ss_pred hhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 99 WHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 99 w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
|+++|++++++|++++++.+.+.+.++++++++.|.+ +|+++|+...+ ..+++++++. +||.+.+
T Consensus 105 h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 170 (404)
T 2xbk_A 105 HAETRRLLTPLFSARRVLEMQPKVEEAADTLLDAFIA--QGPPGDLHGELTVPFALTVLCE-VIGVPPQ 170 (404)
T ss_dssp HHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHH--TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH
Confidence 9999999999999999999999999999999999975 25689998655 5799999998 7898763
No 52
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.76 E-value=3.3e-18 Score=136.85 Aligned_cols=131 Identities=7% Similarity=-0.075 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHcC--CeeEEe-eCCcCeEEecChhHHHHHhhcCCCCCchh-hhhhhHhhhccc-ccccCCchhhhhh
Q psy16355 29 VEFFKFVSEQCNNYK--GNFILW-LGPYPKVYFQTPDCTQAILSSTEHIDKST-EYALLDVWLGTG-LITSTGQKWHHRR 103 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG--~i~~~~-~~~~~~vvv~~p~~~k~il~~~~~~~k~~-~~~~~~~~~g~~-l~~~~g~~w~~~R 103 (228)
.+++..+.+|+ +|| ||++++ +| +.++++||++++++|.+.+.+.+++ .+.......+.+ +++.+|+.|+++|
T Consensus 37 ~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~R 113 (415)
T 2zwu_A 37 AGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYEDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFR 113 (415)
T ss_dssp GCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHCTTTEETTSCSSSHHHHHHCCCTTTTCCTTTTHHHH
T ss_pred cChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcCccccCCCcccCCCCccccccccCccCCCcHHHHHH
Confidence 46888999985 799 999998 55 6999999999999997655454443 232222234677 8888999999999
Q ss_pred hhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHh-HHHHHHHHHHHHhcCcccC
Q psy16355 104 KLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPI-MKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 104 k~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~vi~~~~fG~~~~ 166 (228)
++++++|++++++.+.+.+.++++++++.|.+ ++++|+... +..+++++|+.+ ||.+.+
T Consensus 114 ~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 173 (415)
T 2zwu_A 114 ALANQVVGMPVVDKLENRIQELACSLIESLRP---QGQCNFTEDYAEPFPIRIFMLL-AGLPEE 173 (415)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGG---GTEEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHH-cCCCHH
Confidence 99999999999999999999999999999987 357999975 589999999999 998774
No 53
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.76 E-value=2e-18 Score=138.00 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhhhh-----hhHhhh-----ccc-ccccCCc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTEYA-----LLDVWL-----GTG-LITSTGQ 97 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~-----~~~~~~-----g~~-l~~~~g~ 97 (228)
+++..+.+|. +||||+++++ |+.++++|++|++++++|.+..+..++.... ....+. +.+ +++.+|+
T Consensus 23 ~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 101 (413)
T 2z36_A 23 APPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADGRFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLGMDGA 101 (413)
T ss_dssp BCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGGCCHH
T ss_pred CchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCCCcccCccccCccccccccccccccccccccccccCch
Confidence 5677888886 7899999997 8889999999999999998754333321111 122332 677 8888999
Q ss_pred hhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 98 KWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 98 ~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
.|+++|++++++|++++++.+.+.+.++++++++.|.+. .++++|+...+ ..+++++++.+ ||.+.+
T Consensus 102 ~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 169 (413)
T 2z36_A 102 EHSAARRPVIGEFTVKRLAALRPRIQDIVDHFIDDMLAT-DQRPVDLVQALSLPVPSLVICEL-LGVPYT 169 (413)
T ss_dssp HHHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHHHHTTC-SCSSEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHhhhhHHHHHHHH-hCCCHH
Confidence 999999999999999999999999999999999999752 25689988655 57999999995 898654
No 54
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.76 E-value=1.2e-17 Score=132.83 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhh---------hhHhhhcccccccCCchhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYA---------LLDVWLGTGLITSTGQKWH 100 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~---------~~~~~~g~~l~~~~g~~w~ 100 (228)
+++..+.++ ++||||++ + +.+.++|++|++++++|.+.. +.+.+... ....+.+.++++.+|+.|+
T Consensus 14 ~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~ 88 (397)
T 3buj_A 14 DPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGDER-FARTGIRRFWTDLVGPGLLAEIVGDIILFQDEPDHG 88 (397)
T ss_dssp CCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTCTT-EESHHHHHHHHHHHCSSHHHHHHTTCGGGCCTTHHH
T ss_pred CchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcCCC-cccCcccccccccccccccccccccccccCCchhHH
Confidence 456777666 69999998 6 478999999999999998753 44433221 1122236788889999999
Q ss_pred hhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccC
Q psy16355 101 HRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 101 ~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~ 166 (228)
++|++++++|++++++.+.+.+.++++++++.|.+ ++++|+.. ....+++++++.+ ||.+.+
T Consensus 89 ~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~dl~~~~~~~~~~~vi~~~-~G~~~~ 151 (397)
T 3buj_A 89 RLRGVVGPAFSPSALRRLEPVIAGTVDDLLRPALA---RGAMDVVDELAYPLALRAVLGL-LGLPAA 151 (397)
T ss_dssp HHHHHHGGGSSTTTTGGGHHHHHHHHHHHHHHHHT---TTEEEHHHHTHHHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh---cCCeehHHHHHHHhHHHHHHHH-hCCCHH
Confidence 99999999999999999999999999999999986 56899864 5578999999998 998764
No 55
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.76 E-value=1.8e-18 Score=139.11 Aligned_cols=130 Identities=7% Similarity=-0.023 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHcCCeeEEe--------eCCcCeEEecChhHHHHHhhcCCCCCchhhhhh----------hHhhhcccc
Q psy16355 30 EFFKFVSEQCNNYKGNFILW--------LGPYPKVYFQTPDCTQAILSSTEHIDKSTEYAL----------LDVWLGTGL 91 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~--------~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~----------~~~~~g~~l 91 (228)
+++..+.++ ++||||+++. +|+.++++|++|++++++|.+...+++.+.... .....+.++
T Consensus 38 ~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (433)
T 3ivy_A 38 LPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRFVM 116 (433)
T ss_dssp CCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCTTTEESTTTCSCCCCCTTCCHHHHHGGGGSG
T ss_pred CccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcChhhccCCcccccccccccccccccccccCCc
Confidence 467888888 8899999998 455789999999999999977644444332111 112345788
Q ss_pred cccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcc
Q psy16355 92 ITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYD 164 (228)
Q Consensus 92 ~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~ 164 (228)
++.+|+.|+++|++++++|+++.++.+.+.+.+.++++++.|.+ ++++|+...+ ..+++++|+.+ ||.+
T Consensus 117 ~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~d~~~~~~~~~~~~vi~~l-~G~~ 186 (433)
T 3ivy_A 117 LNMDAPHHTRLRKIISRGFTPRAVGRLHDELQERAQKIAAEAAA---AGSGDFVEQVSCELPLQAIAGL-LGVP 186 (433)
T ss_dssp GGCCTTHHHHHHHHHGGGSCHHHHHTTHHHHHHHHHHHHHHHHH---HCEEEHHHHTTSHHHHHHHHHH-HTCC
T ss_pred cccChHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhh---CCCeeHHHHHHHHHHHHHHHHH-cCCC
Confidence 89999999999999999999999999999999999999999986 5679998887 99999999996 8854
No 56
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.75 E-value=8.7e-18 Score=134.42 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCee-----EEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhh-hh--Hh----hhcccccccCC
Q psy16355 29 VEFFKFVSEQCNNYKGNF-----ILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYA-LL--DV----WLGTGLITSTG 96 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~-----~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~-~~--~~----~~g~~l~~~~g 96 (228)
.+++..+.+| ++||||+ ++++ .+.++|+||++++++|.+...+.+++... .. .. ..+.++++.+|
T Consensus 25 ~~p~~~~~~l-~~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 101 (414)
T 2uuq_A 25 PNPWPMYRAL-RDHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDHQTFSSAQGLTVNYGELEMIGLHDTPPMVMQDP 101 (414)
T ss_dssp TCCHHHHHHH-HHHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCTTTEESTTCSSSCTTHHHHHTCSSSCCGGGCCT
T ss_pred cCchHHHHHH-HhcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCchhccCCCCcccccCcccccccccccccccCCc
Confidence 3567888888 5799999 8866 67999999999999998764454443221 11 12 23578888899
Q ss_pred chhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehH-HhHHHHHHHHHHHHhcCcccC
Q psy16355 97 QKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF-PIMKLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 97 ~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~vi~~~~fG~~~~ 166 (228)
+.|+++|++++++|++++++.+.+.+.++++++++.|.+ ++++|+. +.+..+++++|+. +||.+.+
T Consensus 102 ~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 168 (414)
T 2uuq_A 102 PVHTEFRKLVSRGFTPRQVETVEPTVRKFVVERLEKLRA---NGGGDIVTELFKPLPSMVVAH-YLGVPEE 168 (414)
T ss_dssp THHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHH---TTEEEHHHHTTTHHHHHHHHH-HTTCCGG
T ss_pred hhHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHhHHHHHHH-HhCCCHH
Confidence 999999999999999999999999999999999999987 4579996 5678999999999 6898775
No 57
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.75 E-value=4.4e-18 Score=135.81 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcC-eEEecChhHHHHHhhcCCCCCchhhhhh----hHh-h--hcccccccCCchhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYP-KVYFQTPDCTQAILSSTEHIDKSTEYAL----LDV-W--LGTGLITSTGQKWH 100 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~-~vvv~~p~~~k~il~~~~~~~k~~~~~~----~~~-~--~g~~l~~~~g~~w~ 100 (228)
+++..+.+++ +||||+++++ ++.+ +++|+||++++++|.+.. +.+++.+.. ... . .+.++++.+|+.|+
T Consensus 25 ~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 102 (406)
T 1s1f_A 25 DFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPR-FGREAVMDRQVTRLAPHFIPARGAVGFLDPPDHT 102 (406)
T ss_dssp CCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTT-EESTTTTTTTBCBSSSSCSSCTTSGGGCCTTHHH
T ss_pred CchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcCCC-ccCCcCCCCCcccccccccccccccccCCchHHH
Confidence 4566777774 7999999986 5665 999999999999998753 444432211 111 2 35788889999999
Q ss_pred hhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 101 HRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 101 ~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
++||+++++|++++++.+.+.+.++++++++.|.+. ++++|+...+ ..+++++|+. +||.+.+
T Consensus 103 ~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 166 (406)
T 1s1f_A 103 RLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRA--GPPADLTEAVLSPFPIAVICE-LMGVPAT 166 (406)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH--CSSEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccHHHHHhhHhHHHHHHH-HhCCCHH
Confidence 999999999999999999999999999999999841 6789988655 5799999998 5998764
No 58
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.74 E-value=1.4e-16 Score=130.21 Aligned_cols=147 Identities=11% Similarity=-0.000 Sum_probs=113.3
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCC--CCCchhhhhhhHhhhccccccc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTE--HIDKSTEYALLDVWLGTGLITS 94 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~--~~~k~~~~~~~~~~~g~~l~~~ 94 (228)
.+++||++.+.. +++.++.+|+++|||||++++|+.++++++||+++++++.++. ...++.........+|.+++..
T Consensus 27 ~P~iG~~~~~~~-~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (498)
T 3b6h_A 27 IPWLGYALDFGK-DAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERIFDVQLPHY 105 (498)
T ss_dssp STTTBTHHHHHH-CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHHHHHHTSCCCCTTC
T ss_pred CcchhhHHHhcc-CHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHHHHHHHcCCCcccc
Confidence 688999987753 6789999999999999999999999999999999999997764 2233333334445567777766
Q ss_pred CCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC--CCceehHHhHHHHHHHHHHHHhcCcccCC
Q psy16355 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD--NSGFDVFPIMKLTTLDIVCETTMGYDLGA 167 (228)
Q Consensus 95 ~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~vi~~~~fG~~~~~ 167 (228)
+|+.| |+++.++|+.++++.+.+.+.+.+...++....... ...+++...+..+++++++.++||.+++.
T Consensus 106 ~~~~~---rr~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~~~~~~fG~~~~~ 177 (498)
T 3b6h_A 106 SPSDE---KARMKLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTLYGIEALP 177 (498)
T ss_dssp CHHHH---HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHHHHHHHHCBSCSS
T ss_pred CHHHH---HHHHHHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHHHHHhhcCccccc
Confidence 77776 455667999999998888777777777765543211 23578899999999999999999988754
No 59
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.74 E-value=1.4e-17 Score=133.08 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHh--hhcccccccCCchhhhhhhhh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDV--WLGTGLITSTGQKWHHRRKLL 106 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~--~~g~~l~~~~g~~w~~~Rk~l 106 (228)
.+++..+.++++ |||| ++++.+.+++++|+++++++.+.+.+.+++... +.. ..+.++++.+|+.|+++|+++
T Consensus 28 ~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~~~f~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~R~~~ 102 (411)
T 2jjn_A 28 TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDTATFSSDPTRV-IEGASPTPGMIHEIDPPEHRALRKVV 102 (411)
T ss_dssp HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCTTTEESCGGGG-STTCCCCTTCGGGCCTTHHHHHHHHH
T ss_pred cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCcccccCccccc-CCcccccccccccCCchHHHHHHHHh
Confidence 478888999876 9998 457778999999999999998765444443222 111 234678888999999999999
Q ss_pred cCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehH-HhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHHHHHH
Q psy16355 107 TPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF-PIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEI 185 (228)
Q Consensus 107 ~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 185 (228)
+++|++++++.+.+.+.++++++++. . ++++|+. +....+++++|+.+ ||.+.+.. +++.+..+.+...
T Consensus 103 ~~~fs~~~l~~~~~~i~~~~~~ll~~--~---~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~----~~~~~~~~~~~~~ 172 (411)
T 2jjn_A 103 SSAFTPRTISDLEPRIRDVTRSLLAD--A---GESFDLVDVLAFPLPVTIVAEL-LGLPPMDH----EQFGDWSGALVDI 172 (411)
T ss_dssp HHHSCHHHHHTTHHHHHHHHHHHHHT--S---CSEEEHHHHTTTHHHHHHHHHH-HTCCSCCC----STTCCHHHHHHHS
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHhc--C---CCceeHHHHHHHHHHHHHHHHH-cCCCHHHH----HHHHHHHHHHHhc
Confidence 99999999999999999999999988 3 4689998 55578999999998 99887542 2232223222211
Q ss_pred HHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 186 SMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
..+. |+ +....++..++.+.+.+++.++|+
T Consensus 173 -----~~~~----~~--~p~~~~~~~~~~~~~~~~~~~~i~ 202 (411)
T 2jjn_A 173 -----QMDD----PT--DPALAERIADVLNPLTAYLKARCA 202 (411)
T ss_dssp -----CCSC----TT--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCcc----cc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 112234556666677777777665
No 60
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.73 E-value=3.1e-18 Score=138.08 Aligned_cols=175 Identities=10% Similarity=0.073 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHhhhcc-cccccCCchhhhhhhhhcC
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGT-GLITSTGQKWHHRRKLLTP 108 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~~~g~-~l~~~~g~~w~~~Rk~l~~ 108 (228)
+++.++.++ ++||||+++..++ .++|++|+++++||.+.+.+.+.+.........|. ++++.+|+.|+++|+++++
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~l~~~dg~~h~~~Rr~~~~ 130 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDIFTTKSLVERAEPVMRGPVLAQMHGKEHSAKRRIVVR 130 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTTEECCCTTSCCCCSCC-------------CCHHHHHH
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcccccccccccccccccCCCccccCCcHHHHHHHHHHHh
Confidence 456666665 7899999986554 89999999999999887545544332222233454 5888899999999999999
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehH-HhHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHHHHHHHH
Q psy16355 109 AFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF-PIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISM 187 (228)
Q Consensus 109 ~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+|++++++.+.+.+.+.++++++.|.+ ++.+|+. +....+++++++. +||.+.+.. +.+......+.....
T Consensus 131 ~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~----~~~~~~~~~~~~~~~ 202 (441)
T 3nc3_A 131 SFIGDALDHLSPLIKQNAENLLAPYLE---RGKSDLVNDFGKTFAVCVTMD-MLGLDKRDH----EKISEWHSGVADFIT 202 (441)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTTTTT---TTEEECCCCCHHHHHHHHHHH-HTTCCGGGH----HHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHH-HcCCCHHHH----HHHHHHHHHHHHhcc
Confidence 999999999999999999999999876 5779974 5556799999999 589765321 334433333332211
Q ss_pred HHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhh
Q psy16355 188 KRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSE 226 (228)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (228)
. ..... ...+...++.+.+.+++.++|+
T Consensus 203 ----~-~~~~~------~~~~~~~~~~~~l~~~~~~~i~ 230 (441)
T 3nc3_A 203 ----S-ISQSP------EARAHSLWCSEQLSQYLMPVIK 230 (441)
T ss_dssp ----C-SCCCH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c-ccCCh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011 1124455666667777776665
No 61
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.72 E-value=7e-17 Score=128.52 Aligned_cols=125 Identities=13% Similarity=0.170 Sum_probs=96.4
Q ss_pred HHHHHcCCeeEEeeC-Cc---CeEEecChhHHHHHh-hcCCCCCchhh---------hhhhHh-hhcccccccCCchhhh
Q psy16355 37 EQCNNYKGNFILWLG-PY---PKVYFQTPDCTQAIL-SSTEHIDKSTE---------YALLDV-WLGTGLITSTGQKWHH 101 (228)
Q Consensus 37 ~~~~~yG~i~~~~~~-~~---~~vvv~~p~~~k~il-~~~~~~~k~~~---------~~~~~~-~~g~~l~~~~g~~w~~ 101 (228)
+|+++ |||++++++ +. ++++|+||++++++| .+.. +.+.+. ...... ..+.++++.+|+.|++
T Consensus 21 ~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 98 (398)
T 1lfk_A 21 ELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQ-FSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPPEHTR 98 (398)
T ss_dssp HHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCTTT-EEECTTCCC-------------CCTTCGGGCCTTHHHH
T ss_pred HHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhCcc-cccccccccccccCCcccccccccccCccccCCHHHHH
Confidence 46665 999999875 45 799999999999999 5543 333222 111111 2356788889999999
Q ss_pred hhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHH-HHHHHHHHHhcCcccC
Q psy16355 102 RRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKL-TTLDIVCETTMGYDLG 166 (228)
Q Consensus 102 ~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~vi~~~~fG~~~~ 166 (228)
+|++++++|++++++.+.+.+.++++++++.|.+. |+++|+.+.+.. ++.++++. +||.+.+
T Consensus 99 ~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 161 (398)
T 1lfk_A 99 LRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERA--GSPADLIAFVADKVPGAVLCE-LVGVPRD 161 (398)
T ss_dssp HHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH--CSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999999999999999999999999999999742 678999998886 99999998 5898764
No 62
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.70 E-value=1.7e-17 Score=132.72 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEe-eCC-cCeEEecChhHHHHHhhcCCCCCchhhhhh--h-Hhh--h-cccccccCCchhh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILW-LGP-YPKVYFQTPDCTQAILSSTEHIDKSTEYAL--L-DVW--L-GTGLITSTGQKWH 100 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~-~~~-~~~vvv~~p~~~k~il~~~~~~~k~~~~~~--~-~~~--~-g~~l~~~~g~~w~ 100 (228)
.+++..+.++.+ ||||+++. .|. .++++|+++++++++|.+.+.+.+.+.... . ... . +.++++.+|+.|+
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 115 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPSAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQHR 115 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTTSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhChhhhcCCccccccccccccccccCCCccccCcHHHH
Confidence 368888888876 99999996 443 789999999999999976654444322111 0 001 2 5568888999999
Q ss_pred hhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCccc
Q psy16355 101 HRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDL 165 (228)
Q Consensus 101 ~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~ 165 (228)
++|++++++|++++++.+.+.+.+.++++++.|.+ ++++|+...+ ..+++++|+. +||.+.
T Consensus 116 ~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~dl~~~~~~~~~~~vi~~-l~G~~~ 177 (415)
T 3mgx_A 116 KLRKLVGPLLSRAAARKLAERVRIEVGDVLGRVLD---GEVCDAATAIGPRIPAAVVCE-ILGVPA 177 (415)
T ss_dssp HHHHHHGGGSSHHHHHHSHHHHHHHHHHHTTTSSS---SSCEESTTTTTTHHHHHHHHH-HHTCCG
T ss_pred HHHHHhHhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHH-HcCCCH
Confidence 99999999999999999999999999999998876 4579998877 6799999998 478654
No 63
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.69 E-value=1.4e-16 Score=129.42 Aligned_cols=143 Identities=16% Similarity=0.096 Sum_probs=109.8
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCC-chhhhhhhHhhhcccccccC
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHID-KSTEYALLDVWLGTGLITST 95 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~-k~~~~~~~~~~~g~~l~~~~ 95 (228)
.+++||++.+. .+++..+.+|+++||||+++++|+.++++++||+++++++.+...+. ++..+.....++|.+++..+
T Consensus 27 ~P~iG~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 105 (475)
T 3b98_A 27 IPWLGHALEFG-KDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVASLDQTSYAQVLMKRIFNMILPSHN 105 (475)
T ss_dssp STTTBTHHHHH-HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTTEESHHHHHHHHHHTTCCCCTTCC
T ss_pred cchHHhHHHHh-hCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCcccCCchHHHHHHHHHHhCCCCCCCC
Confidence 68899998774 36899999999999999999999999999999999999998764233 23333444555677777777
Q ss_pred CchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhh-C--CCceehHHhHHHHHHHHHHHHhcCc
Q psy16355 96 GQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQEL-D--NSGFDVFPIMKLTTLDIVCETTMGY 163 (228)
Q Consensus 96 g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~vi~~~~fG~ 163 (228)
|+.| |+++.++|++++++.+.+.+.+.+.++++.+.... . ...+++...+..+++++++...||.
T Consensus 106 ~~~~---R~~~~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 173 (475)
T 3b98_A 106 PESE---KKRAEMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGA 173 (475)
T ss_dssp HHHH---HHHHHHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHH---HHHHHHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHHHhhhheeCC
Confidence 7765 57777899999999999999999998887765431 1 1246677777777777777777774
No 64
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.69 E-value=9.7e-17 Score=126.44 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh-----hhhh--Hh--h---hcccccccCCchh
Q psy16355 32 FKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE-----YALL--DV--W---LGTGLITSTGQKW 99 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~-----~~~~--~~--~---~g~~l~~~~g~~w 99 (228)
+..+.++ ++||||+++ | +.+++++|++++++|.+.+.+.+++. +... .. + .|.++++.+|+.|
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~h 76 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLH 76 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCTTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHH
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCcccccccccccccccccccccccccccccccccccCCChHH
Confidence 4566666 589999987 4 58999999999999987643444331 2210 01 1 2367888899999
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
+++|++++++|++++++.+.+.+.++++++++.| + ++++|+.+.+ ..+++++|+.+ ||.+.+
T Consensus 77 ~~~R~~~~~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~g~~d~~~~~~~~~~~~vi~~~-~G~~~~ 139 (368)
T 1io7_A 77 DELRSMSADIFSPQKLQTLETFIRETTRSLLDSI-D---PREDDIVKKLAVPLPIIVISKI-LGLPIE 139 (368)
T ss_dssp HHHHGGGTTTTCHHHHHHHHHHHHHHHHHHHHTC-C---TTSEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHh-h---cCCccHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 9999999999999999999999999999999999 5 3479998866 79999999999 998764
No 65
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.68 E-value=1.3e-16 Score=130.36 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=114.5
Q ss_pred hhhhcccccccC----cHHHHHHHHHHHHHcCC-eeEEeeCCcCe-------EEecChhHHHHHhhcCC----CCCchhh
Q psy16355 16 TKRKLGLLNIKL----SVEFFKFVSEQCNNYKG-NFILWLGPYPK-------VYFQTPDCTQAILSSTE----HIDKSTE 79 (228)
Q Consensus 16 ~~~~~g~~~~~~----~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------vvv~~p~~~k~il~~~~----~~~k~~~ 79 (228)
+.+++|++..+. ..+++.++.+++++||+ ||++++++.++ +++++++..+.++.... ....+.+
T Consensus 35 g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~k~~~~~~~~ 114 (495)
T 3dsk_A 35 GLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTY 114 (495)
T ss_dssp CSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEECSSCTTSSS
T ss_pred CCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccccccccccccC
Confidence 347788876553 34788999999999999 99999999888 66677776666664321 1111111
Q ss_pred hhhhHhhhc----ccccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHHH
Q psy16355 80 YALLDVWLG----TGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLD 154 (228)
Q Consensus 80 ~~~~~~~~g----~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 154 (228)
.... .++| .+++..+|+.|+++|+++.++|++.. +.+.+.+++.++++++.|.+... ++++|+.+.+..++++
T Consensus 115 ~~~~-~l~g~~~~~~~~~~~g~~h~~~R~~~~~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl~~~~~~~~~~ 192 (495)
T 3dsk_A 115 MPST-ELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFN 192 (495)
T ss_dssp CCCG-GGGTTCCCGGGCCTTSHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSEESHHHHHHHHHH
T ss_pred CCCc-cccCCCcceeeeCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHH
Confidence 1112 3455 23455689999999999999999854 88999999999999999976432 5689999999999999
Q ss_pred HHHHHhcCcccCCC
Q psy16355 155 IVCETTMGYDLGAL 168 (228)
Q Consensus 155 vi~~~~fG~~~~~~ 168 (228)
+++.++||.+.+..
T Consensus 193 ~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 193 FLARAFYGTNPADT 206 (495)
T ss_dssp HHHHHHHSCCGGGS
T ss_pred HHHHHHcCCCcchh
Confidence 99999999988765
No 66
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.68 E-value=3.4e-16 Score=125.64 Aligned_cols=131 Identities=9% Similarity=0.045 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCCchhhh------h-----hhHhhhcccccccCCc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHIDKSTEY------A-----LLDVWLGTGLITSTGQ 97 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~k~~~~------~-----~~~~~~g~~l~~~~g~ 97 (228)
+++..+.++.++ |||+++.. ++.++++|++++++++++.+...+++.+.+ . ....+.+.+++..+|+
T Consensus 39 ~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~ 117 (426)
T 3rwl_A 39 SVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNHDIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMDRP 117 (426)
T ss_dssp CHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCTTTEECCGGGTCSSSSCCC-------CCCCCGGGCCTT
T ss_pred CccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCCcccccccccCCCCcccccccccccccccCcccccCch
Confidence 478888888775 99999987 456799999999999999887544443211 0 1112234568888999
Q ss_pred hhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCccc
Q psy16355 98 KWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDL 165 (228)
Q Consensus 98 ~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~ 165 (228)
.|+++|++++++|++++++.+.+.+.+.++++++.|.+ ++++|+...+ ..++.++++. +||.+.
T Consensus 118 ~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~dl~~~~~~~~~~~vi~~-l~G~~~ 182 (426)
T 3rwl_A 118 RHDEQRKAVSPIVAPANLAALEGTIRERVSKTLDGLPV---GEEFDWVDRVSIEITTQMLAT-LFDFPF 182 (426)
T ss_dssp HHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHTSCS---SSCEEHHHHTHHHHHHHHHHH-HHTCCG
T ss_pred HHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHhhc---CCCcchHHHHHHHHHHHHHHH-HcCCCH
Confidence 99999999999999999999999999999999999865 6789976666 6899998886 799754
No 67
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.68 E-value=1.1e-16 Score=128.41 Aligned_cols=177 Identities=6% Similarity=-0.021 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhh--hhhHhhhcccccccCCchhhhhhhh
Q psy16355 29 VEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEY--ALLDVWLGTGLITSTGQKWHHRRKL 105 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~--~~~~~~~g~~l~~~~g~~w~~~Rk~ 105 (228)
.+++..+.++++++| ||+++..++ +.++|+||++++++|.+.+.+.+.+.. .......+.++++.+|+.|+++|++
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~dg~~h~~~R~~ 116 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYRSPERFSSRVIWVPREAGEAYDMVPTKLDPPEHTPYRKA 116 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCTTTEETTCCSSSHHHHHHCCCTTTTCCTTTHHHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHcChhhccCCcccCCcccccccccCCccCCcHHHHHHHHH
Confidence 478889988877665 899998776 499999999999999765445444321 1122223457788899999999999
Q ss_pred hcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCcccCCCCCCCchHHHHHHHHHH
Q psy16355 106 LTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAE 184 (228)
Q Consensus 106 l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
++++|++++++.+.+.+.+.++++++.|.+ ++.+|+.. ....++.++++.+ ||.+.+.. ..+.+....++
T Consensus 117 ~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~~v~~~~-~G~~~~~~----~~~~~~~~~~~- 187 (421)
T 3lxh_A 117 IDKGLNLAEIRKLEDQIRTIAVEIIEGFAD---RGHCEFGSEFSTVFPVRVFLAL-AGLPVEDA----TKLGLLANEMT- 187 (421)
T ss_dssp HHHHHSHHHHHTTHHHHHHHHHHHHHTTTT---TSEEEHHHHTTTTHHHHHHHHH-HTCCGGGH----HHHHHHHHHHH-
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHHhh---cCCeehHHHHHHHHHHHHHHHH-cCCCHHHH----HHHHHHHHHHh-
Confidence 999999999999999999999999999976 56788754 4567888888875 78665321 22322222211
Q ss_pred HHHHHhhccccchhHHhhcCchhHhHHHHHHHHHHHHHHHhhc
Q psy16355 185 ISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFTLSYSEL 227 (228)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (228)
.... ++ +....++..++.+.+.+++.++|++
T Consensus 188 -------~~~~---~~--p~~~~~~~~~~~~~~~~~~~~~i~~ 218 (421)
T 3lxh_A 188 -------RPSG---NT--PEEQGRSLEAANKGFFEYVAPIIAA 218 (421)
T ss_dssp -------SCCC---SS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccc---CC--CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 2222456677777788887777653
No 68
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.67 E-value=1.7e-16 Score=126.19 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhh--hhhHhhhcccccccCCchhhhhhhhh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEY--ALLDVWLGTGLITSTGQKWHHRRKLL 106 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~--~~~~~~~g~~l~~~~g~~w~~~Rk~l 106 (228)
.+++..+.+|+++ |||+++..++ +.++|+||+++++++.+.+.+.+.+.. .......+.++++.+|+.|+++||++
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~g~~h~~~R~~~ 101 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDAERLSSQCLAVTPGLGKVMQFIPLQQDGAEHKAFRTPV 101 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCTTTEESTTCCSSTTHHHHHCCTTTTCCHHHHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCcccccCCcccCCCccccccccCccccCCcHHHHHHHHh
Confidence 4789999999998 9999998874 499999999999999776444444321 11222234567888999999999999
Q ss_pred cCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCccc
Q psy16355 107 TPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDL 165 (228)
Q Consensus 107 ~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~ 165 (228)
+++|++++++.+.+.+.+.++++++.|.+ ++.+|+...+ ..++.++++. +||.+.
T Consensus 102 ~~~f~~~~l~~~~~~i~~~~~~l~~~l~~---~~~~d~~~~~~~~~~~~v~~~-~~G~~~ 157 (396)
T 3oft_A 102 MKGLASRFVVALEPKVQAVARKLMESLRP---RGSCDFVSDFAEILPLNIFLT-LIDVPL 157 (396)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHGG---GSEEEHHHHTTTTHHHHHHHH-HTTCCG
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHhhh---cCCccHHHHHHHHHHHHHHHH-HcCCCH
Confidence 99999999999999999999999999987 4578876554 6688888877 578654
No 69
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.66 E-value=6.8e-17 Score=129.32 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhh--------hhHhhhcccccccCCchhhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYA--------LLDVWLGTGLITSTGQKWHH 101 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~--------~~~~~~g~~l~~~~g~~w~~ 101 (228)
+++.. ++.++|||++++.+++.. ++|+++++++++|.+..+........ ......+.++++.+|++|++
T Consensus 34 ~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~~ 110 (416)
T 3p3o_A 34 FSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADHRR 110 (416)
T ss_dssp CCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHHHH
T ss_pred CCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHHHH
Confidence 45666 566789999999988777 99999999999998875333322111 11223467888999999999
Q ss_pred hhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehH-HhHHHHHHHHHHHHhcCccc
Q psy16355 102 RRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF-PIMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 102 ~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~vi~~~~fG~~~ 165 (228)
+||+++++|++++++.+.+.+.+.++++++.| . ++.+|+. +....+++++|+. +||.+.
T Consensus 111 ~Rr~~~~~fs~~~l~~~~~~i~~~~~~ll~~l-~---~g~~d~~~~~~~~~~~~vi~~-l~G~~~ 170 (416)
T 3p3o_A 111 LRGLATHPFTPRRITAVQPFVRSTVEQLIDKL-P---QGDFDFVQHFPHPLPALVMCQ-LLGFPL 170 (416)
T ss_dssp HHHTTCGGGSHHHHHHHHHHHHHHHHHHHHTC-C---SSSEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhh-c---cCCccHHHHHHHHHHHHHHHH-HhCCCH
Confidence 99999999999999999999999999999999 4 4569964 5556799999999 488754
No 70
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.66 E-value=7.3e-17 Score=128.35 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhcCCCCC-c-hhh--hhh-----hHhhhcccccccCCchh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSSTEHID-K-STE--YAL-----LDVWLGTGLITSTGQKW 99 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~~~~~~-k-~~~--~~~-----~~~~~g~~l~~~~g~~w 99 (228)
+++..+.+| ++||||+++++ ++.+.++++||++++++|.++. +. + ++. +.. +..+.+.+++++ .|
T Consensus 17 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~h 91 (396)
T 1n40_A 17 RIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDRR-FSMKETAAAGAPRLNALTVPPEVVNNMGNI---AD 91 (396)
T ss_dssp SCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTT-EESGGGGSTTCCCSSCCSSCGGGGGHHHHH---HH
T ss_pred CccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCCC-cccccCccccccccccccCCchhhhhhhhH---HH
Confidence 567788999 99999999997 7889999999999999998765 33 3 321 111 112235666666 99
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
+++||+++++|+++ ++.+.+.+.++++++++.|.+. ++++|+...+ ..+++++|+. +||.+.+
T Consensus 92 ~~~R~~~~~~fs~~-~~~~~~~i~~~~~~l~~~l~~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 155 (396)
T 1n40_A 92 AGLRKAVMKAITPK-APGLEQFLRDTANSLLDNLITE--GAPADLRNDFADPLATALHCK-VLGIPQE 155 (396)
T ss_dssp TTCHHHHHHHTSSC-STTHHHHHHHHHHHHHHHHHHH--CSCEETTTTTHHHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHHhhChH-HHHhHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHhHHHHHHH-HhCCChh
Confidence 99999999999999 9999999999999999999763 5689998665 5899999999 7998764
No 71
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.65 E-value=3e-15 Score=118.98 Aligned_cols=128 Identities=6% Similarity=-0.014 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhhhhhHh--hhcccccccCCchhhhhhhhhc
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDV--WLGTGLITSTGQKWHHRRKLLT 107 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~~~~~~--~~g~~l~~~~g~~w~~~Rk~l~ 107 (228)
+++..+.++.+ +|||+++..| .++|++++.+++++.+.. +...+.+..... ..+++++..+|+.|+++|++++
T Consensus 21 dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~~-fs~~~~~~~~~~~~~~~~~l~~~dg~~h~~~R~~~~ 95 (394)
T 2wiy_A 21 NPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLPI-MSVEPGWADAGPWAVASDTALGSDPPHHTVLRRQTN 95 (394)
T ss_dssp CCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTSTT-EECHHHHHTCGGGGGGGGSGGGCCTTHHHHHHHHHH
T ss_pred CccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCCC-ccccccccccccchhcccccccCCchHHHHHHHHHH
Confidence 56777777755 5899987543 789999999999997653 333222221112 1246788889999999999999
Q ss_pred CcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhHHHHHHHHHHHHhcCccc
Q psy16355 108 PAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 108 ~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~~~~fG~~~ 165 (228)
++|++++++.+.+.+.+.++++++.|.+ ++++|+...+..+++++++..+||.+.
T Consensus 96 ~~fs~~~~~~~~~~i~~~~~~l~~~~~~---~~~~d~~~~~~~~~~~vi~~~~~G~~~ 150 (394)
T 2wiy_A 96 KWFTPKLVDGWVRTTRELVGDLLDGVEA---GQVIEARRDLAVVPTHVTMARVLQLPE 150 (394)
T ss_dssp TTCSHHHHHHHTHHHHHHHHHHHHTCCT---TCCEEHHHHHTHHHHHHHHHHHHTCCC
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhc---cCCeeHHHHHHhhhHHHHHHHHcCCCH
Confidence 9999999999999999999999998875 678999999999999999999999764
No 72
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.64 E-value=9.8e-16 Score=124.39 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=108.0
Q ss_pred hhhcccccccC----cH-HHHHHHHHHHHHcCC-eeEEeeCCcCeE-------EecChhHHHHHhhcC-----CCCCchh
Q psy16355 17 KRKLGLLNIKL----SV-EFFKFVSEQCNNYKG-NFILWLGPYPKV-------YFQTPDCTQAILSST-----EHIDKST 78 (228)
Q Consensus 17 ~~~~g~~~~~~----~~-~~~~~~~~~~~~yG~-i~~~~~~~~~~v-------vv~~p~~~k~il~~~-----~~~~k~~ 78 (228)
.+++|++..+. .. +++.++.+++++||+ ||++++++.++| ++++++..+.++... ..+. +.
T Consensus 17 ~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~ 95 (473)
T 3dan_A 17 IPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFT-GT 95 (473)
T ss_dssp STTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTEECSSCTT-SS
T ss_pred CcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcceecccccc-cc
Confidence 46777776532 33 789999999999999 999998755433 334444433444311 1111 11
Q ss_pred hhhhhHhhhc----ccccccCCchhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhC-CCceehHHhHHHHHH
Q psy16355 79 EYALLDVWLG----TGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTL 153 (228)
Q Consensus 79 ~~~~~~~~~g----~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 153 (228)
..... .+.| .+++..+|+.|+++|++++++|+++ ++.+.+.+++.++++++.|.+... ++++|+.+.+..+++
T Consensus 96 ~~~~~-~~~g~~~~~~~~~~~~~~h~~~R~~~~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl~~~~~~~~~ 173 (473)
T 3dan_A 96 YMPST-KLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAF 173 (473)
T ss_dssp SCCCG-GGGTTSCCGGGCCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHH
T ss_pred ccCCc-cccCCCcceeeeCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Confidence 11111 2233 3456678999999999999999995 899999999999999999976432 568999999999999
Q ss_pred HHHHHHhcCcccCC
Q psy16355 154 DIVCETTMGYDLGA 167 (228)
Q Consensus 154 ~vi~~~~fG~~~~~ 167 (228)
++++.++||.+.+.
T Consensus 174 ~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 174 RFLGRAYFNSNPEE 187 (473)
T ss_dssp HHHHHHHHSCCGGG
T ss_pred HHHHHHHcCCCCCc
Confidence 99999999998876
No 73
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.63 E-value=3.5e-16 Score=123.18 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchh-hhh-hh-----H-hhhc----ccccccCCchh
Q psy16355 32 FKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKST-EYA-LL-----D-VWLG----TGLITSTGQKW 99 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~-~~~-~~-----~-~~~g----~~l~~~~g~~w 99 (228)
+..+.++ ++||||+++. | .+++++|++++++|.+.+.+.+++ .+. .+ . .+.| .++++.+|+.|
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 76 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLH 76 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCTTTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGCCTTHH
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCchhhccCcccccccccccccccchhhcccccccccCCchhH
Confidence 4456666 5799999987 3 899999999999998764444442 121 12 2 3344 67888999999
Q ss_pred hhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHh-HHHHHHHHHHHHhcCcc
Q psy16355 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPI-MKLTTLDIVCETTMGYD 164 (228)
Q Consensus 100 ~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~vi~~~~fG~~ 164 (228)
+++||+++++|++++++. +.+.+.++++++.|. | .+|+... ...+++++|+. +||.+
T Consensus 77 ~~~R~~~~~~fs~~~l~~--~~i~~~~~~l~~~l~----g-~~d~~~~~~~~~~~~vi~~-~~G~~ 134 (367)
T 3b4x_A 77 DELRNLTADAFNPSNLPV--DFVREVTVKLLSELD----E-EFDVIESFAIPLPILVISK-MLGIN 134 (367)
T ss_dssp HHHHHTTGGGGSGGGSCH--HHHHHHHHHHHHTCC----S-EEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred HHHHHHHHHhcCHhhhcc--hHHHHHHHHHHHhcc----C-CcchHHHHHHhhHHHHHHH-HcCCC
Confidence 999999999999999988 999999999999886 3 4999865 48999999999 79987
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.59 E-value=7.1e-16 Score=120.38 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=92.3
Q ss_pred HHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchh-hhhhhHhhhcccccccCCchhhhhhhhhcCcCCHHHHHHh
Q psy16355 40 NNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKST-EYALLDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETM 118 (228)
Q Consensus 40 ~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~-~~~~~~~~~g~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~ 118 (228)
++||||+++ | .+++++|++++++|.+++.+.+++ .+.. .. .+.++++.+|+.|+++||+++++|++++++.+
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~~~f~~~~~~~~~-~~-~~~~l~~~~g~~~~~~R~~~~~~fs~~~l~~~ 74 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMNDKIFSSNPGNRYS-NA-GGISFITMDNPEHKEFRDISAPYFLPSKINDY 74 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCTTTEESSCSSCCC-----CCGGGGCCHHHHHHHHHHHHHHHSHHHHGGG
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhChhhcccCCcCCCC-Cc-cccccccCCchHHHHHHHHhhhhcCHHHHHHH
Confidence 589999986 3 999999999999998764344433 2222 22 36788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 119 LEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
.+.+.++++++++.|. ++|+.+.+ ..+++++|+.+ ||.+.+
T Consensus 75 ~~~i~~~~~~l~~~l~------~~d~~~~~~~~~~~~vi~~~-~G~~~~ 116 (343)
T 2rfb_A 75 KDFIEETSNDLIKNID------NKDIISEYAVRLPVNIISKI-LGIPDS 116 (343)
T ss_dssp HHHHHHHHHHHHTTCT------TSCHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHHHhcc------ccCHHHHHhhhhhHHHHHHH-cCCCHH
Confidence 9999999999998876 58888754 89999999998 998764
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.32 E-value=6.6e-12 Score=100.28 Aligned_cols=127 Identities=9% Similarity=0.097 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh--hh-hh--Hhhh-cccccccCCchhhhhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE--YA-LL--DVWL-GTGLITSTGQKWHHRR 103 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~--~~-~~--~~~~-g~~l~~~~g~~w~~~R 103 (228)
+|+..+.++ +++|||++. ++...++|+++++++++|.+...++.... .. .. .... +..++..||++|+++|
T Consensus 35 dP~~~~~~l-R~~gPV~~~--~~~~~~~vt~~~~v~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~Dg~~H~r~R 111 (412)
T 4dnj_A 35 DPYPEQETL-REAGPVVYL--DKWNVYGVARYAEVYAVLNDPLTFCSSRGVGLSDFKKEKPWRPPSLILEADPPAHTRTR 111 (412)
T ss_dssp SCHHHHHHH-HHHCSSEEE--TTTTEEEECSHHHHHHHHTCTTTEESTTCSSSSCTTTSCCSSCCCTTTTCCTTHHHHHH
T ss_pred CcHHHHHHH-HhcCCEEEE--CCCCEEEECCHHHHHHHHcCCccccCCCccccccccccccccCCCccccCChHHHHHHH
Confidence 567777666 457999866 77789999999999999987644433221 11 11 1112 2457778999999999
Q ss_pred hhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceeh-HHhHHHHHHHHHHHHhc
Q psy16355 104 KLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDV-FPIMKLTTLDIVCETTM 161 (228)
Q Consensus 104 k~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~vi~~~~f 161 (228)
|+++++|++++++.+.+.+.+.++++++.+... ++.+|+ .+....+++++++.++.
T Consensus 112 ~~~~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~--~~~~D~v~~~~~~~~~~~i~~l~g 168 (412)
T 4dnj_A 112 AVLSKVLSPATMKRLRDGFAAAADAKIDELLAR--GGNIDAIADLAEAYPLSVFPDAMG 168 (412)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT--TSEEETCCCCCCHHHHHHHHHHHT
T ss_pred hhcccccCHHHHHHhhHHHHHHHHHHHHhhhcc--CCCceeHHHHHhhhhHhHHHHHcC
Confidence 999999999999999999999999999998663 566775 56677888888888653
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.23 E-value=9e-11 Score=93.80 Aligned_cols=132 Identities=8% Similarity=0.022 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhhh-h-hhHhhhcccccccCCchhhhhhhh
Q psy16355 29 VEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEY-A-LLDVWLGTGLITSTGQKWHHRRKL 105 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~~-~-~~~~~~g~~l~~~~g~~w~~~Rk~ 105 (228)
.+++..+.++.++.+ +++..-.++ ...+|++++.+++++.+...|++.... . ......+..++..|+++|+++||+
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~D~p~H~r~Rrl 115 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDPTRFSSEVIFLPKEAGEKAQMVPTKMDPPEHTPYRKA 115 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCTTTEESSCCSSSTTSSCSSCTTTTTCCTTTHHHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCchhccCCCcccccccccccccCcccCCcHHHHHHHHH
Confidence 367777777766544 344443333 478899999999999886444433211 1 111111233556789999999999
Q ss_pred hcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHH-hHHHHHHHHHHHHhcCccc
Q psy16355 106 LTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP-IMKLTTLDIVCETTMGYDL 165 (228)
Q Consensus 106 l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vi~~~~fG~~~ 165 (228)
++++|++++++.+.+.+++.++++++.+.+ ++.+|+.. ....+++.+++.+ +|...
T Consensus 116 l~~~Fs~~~l~~~~~~i~~~~~~lld~l~~---~g~~D~v~~~a~~l~~~vi~~l-lg~~~ 172 (417)
T 4dxy_A 116 LDKGLNLAKIRKVEDKVREVASSLIDSFAA---RGECDFAAEYAELFPVHVFMAL-ADLPL 172 (417)
T ss_dssp HHHHHCHHHHHTTHHHHHHHHHHHHHHHHT---TSEEEHHHHTTTTHHHHHHHHH-TTCCG
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhh---cCCeeeHHHHHhhhHHHHHHHH-cCCCH
Confidence 999999999999999999999999999987 56788644 4566777777765 67544
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.23 E-value=3.9e-08 Score=77.40 Aligned_cols=111 Identities=6% Similarity=-0.012 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcCCCCCchhh-h--h------hhHhhhcccccccCCchhh
Q psy16355 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE-Y--A------LLDVWLGTGLITSTGQKWH 100 (228)
Q Consensus 30 ~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~~~~~k~~~-~--~------~~~~~~g~~l~~~~g~~w~ 100 (228)
+++..+.+++++ ||++.. .+.++++++++++++|.+.. +.+.+. + . .... .+.++++.+|++|
T Consensus 60 dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~~-f~~~~~~~~~~~~~~~~~~~~-~~~~l~~~dg~~H- 131 (381)
T 2yjn_B 60 DPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDPA-FTRATGRTPEWMRAAGAPPAE-WAQPFRDVHAASW- 131 (381)
T ss_dssp CCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCSS-EESSCCCCCHHHHHHTCCHHH-HTHHHHHHHHCCC-
T ss_pred CchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCCC-cCCCcccccccccccccccch-hhhhhhhCCchhh-
Confidence 567788888765 998764 45899999999999998753 333211 1 0 1222 3567788899999
Q ss_pred hhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCCceehHHhH-HHHHHHHHHHHhcCcccC
Q psy16355 101 HRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM-KLTTLDIVCETTMGYDLG 166 (228)
Q Consensus 101 ~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~vi~~~~fG~~~~ 166 (228)
+++|+ . .+.+++.++++++.|. +.+|+...+ ..+++++|+.+ ||.+.+
T Consensus 132 ------~~~Ft-----~-~~~i~~~~~~ll~~~~-----g~~Dl~~~~a~~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 132 ------EGEVP-----D-VGELAESFAGLLPGAG-----ARLDLVGDFAWQVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp ------CSCCC-----C-CSCHHHHTSTTSCC-----------CCCCCCTHHHHHHHHTC------C
T ss_pred ------hhccC-----C-hHHHHHHHHHHHHhcc-----CcchHHHHHHHHHHHHHHHHH-cCCCHH
Confidence 78888 3 7788888888888875 358888554 79999999995 998764
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.24 E-value=0.74 Score=28.16 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=44.1
Q ss_pred hhcccccc-cCcHHHHHHHHHHHHHcC-CeeEEeeCCcCeEEecChhHHHHHhhc--C-CCCCch
Q psy16355 18 RKLGLLNI-KLSVEFFKFVSEQCNNYK-GNFILWLGPYPKVYFQTPDCTQAILSS--T-EHIDKS 77 (228)
Q Consensus 18 ~~~g~~~~-~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~vvv~~p~~~k~il~~--~-~~~~k~ 77 (228)
..++||.. .........+.++..+|| +|..+ .+|.-+|...+.+.++..+.. . ..+.|+
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34889885 444555667899999995 99888 568889999999999888853 2 445554
No 79
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=83.79 E-value=2.6 Score=27.15 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=39.7
Q ss_pred hhhhhccccccc-CcHHHHHHHHHHHHHcCCeeEEeeC------CcCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIK-LSVEFFKFVSEQCNNYKGNFILWLG------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~vvv~~p~~~k~il~~ 70 (228)
....++|||..- ...+.-..+.++..+||+|..+.+. |.-+|...+++.+..++..
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 445678888854 4444445677899999999887762 3457788888888888743
No 80
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=82.71 E-value=4.3 Score=24.23 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=38.9
Q ss_pred hhhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++.. ....+....+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 69 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 69 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHH
Confidence 3456788874 44445555677899999999888764 445777888888888774
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.67 E-value=4.7 Score=24.18 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=38.1
Q ss_pred hhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC------CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~vvv~~p~~~k~il~ 69 (228)
..++|++.. ....+....+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~ 70 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVN 70 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHH
Confidence 467888874 44555555666889999999888764 334677788888888774
No 82
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.51 E-value=2.8 Score=25.88 Aligned_cols=60 Identities=8% Similarity=-0.095 Sum_probs=42.8
Q ss_pred ccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--CcCeEEecChhHHHHHhhc
Q psy16355 8 GGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~vvv~~p~~~k~il~~ 70 (228)
+|.+..-....++|||..-.. .+.+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 8 GPPSRRSENRVVVSGLPPSGS---WQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp SCCCCSCCCEEEEESCCSSCC---HHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCC---HHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 344444455678899885554 45567788999999887763 4557778899888888753
No 83
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=82.35 E-value=2 Score=25.86 Aligned_cols=52 Identities=8% Similarity=-0.106 Sum_probs=35.2
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHh
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il 68 (228)
-+++.++||+..-.. -..+.++..+||+|..+++. |.-+|-..+++.++.+.
T Consensus 6 ~~~wL~VgNL~~~~t---e~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 6 GSSWLLLKNLTAQID---GPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQ 60 (89)
T ss_dssp CCCEEEEECCCTTCC---CHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred ccceEEEeCCCccCC---HHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHH
Confidence 356677899885544 34677889999999988853 23455556775555554
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=79.26 E-value=4.2 Score=25.05 Aligned_cols=60 Identities=13% Similarity=-0.023 Sum_probs=40.8
Q ss_pred cccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 7 KGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
++|....-....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQ---EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCC---HHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3444444445577888886444 34467788999999888763 234677788888888875
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=78.68 E-value=3.9 Score=25.95 Aligned_cols=59 Identities=14% Similarity=-0.001 Sum_probs=40.4
Q ss_pred ccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 8 GGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
+|....-....++++|..-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++.
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEAT---EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCC---HHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 333333445677888885444 34566778899999888763 244777889999888884
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=78.55 E-value=3.2 Score=24.57 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=35.9
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~ 69 (228)
....+++++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 8 ~~~l~V~nlp~~~t---~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 8 ACQIFVRNLPFDFT---WKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp CCEEEECSCCTTCC---HHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHH
Confidence 34567888875444 34567788899998877653 234667788888888775
No 87
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=77.83 E-value=5.3 Score=24.28 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=37.5
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~ 69 (228)
....+++++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 11 ~~~l~V~nl~~~~t---~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 11 VKVLFVRNLANTVT---EEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp CCCEEEECCCTTCC---HHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHH
Confidence 34567888875444 34566778889999888764 345677789998888875
No 88
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.00 E-value=5.7 Score=22.96 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=38.8
Q ss_pred hhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhhc
Q psy16355 12 HNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~~ 70 (228)
..-....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 9 ~~~~~~l~V~~l~~~~t---~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT---ETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CSSCCCEEEECCTTTSC---HHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred CCCccEEEEcCCCCCCC---HHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 34445567888875444 34567778899999887753 3456777888888888753
No 89
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=76.70 E-value=7.2 Score=22.35 Aligned_cols=53 Identities=4% Similarity=-0.030 Sum_probs=36.5
Q ss_pred hhcccccccCcH---HHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhhc
Q psy16355 18 RKLGLLNIKLSV---EFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 18 ~~~g~~~~~~~~---~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~~ 70 (228)
.++|+++..... .....+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 4 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 357777643321 1346678888999999888764 3346777889888888753
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.08 E-value=6 Score=24.25 Aligned_cols=52 Identities=6% Similarity=0.012 Sum_probs=37.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~~ 70 (228)
...++|+++.-.. ...+.++..+||+|..+.+. |.-+|...+++.++.++..
T Consensus 12 ~~lfV~~Lp~~~t---e~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 12 RSVYIKGFPTDAT---LDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp GCEEEECCCTTCC---HHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTS
T ss_pred CEEEEECCCCCCC---HHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHc
Confidence 3456788875444 34466778899999877753 3457778899999998863
No 91
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=75.72 E-value=7.1 Score=21.85 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=34.1
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhcC
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~~ 71 (228)
++|+++.-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++..+
T Consensus 3 ~v~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 3 FVGGLSPDTP---EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp EESCCCSSCC---HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred EEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 4677764444 34466777889999877763 23467778899888888643
No 92
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=75.62 E-value=3.3 Score=25.96 Aligned_cols=51 Identities=8% Similarity=-0.108 Sum_probs=37.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~vvv~~p~~~k~il~ 69 (228)
...++|||..-.. .+.+.++..+||+|..+.+. +.-+|...+++.++.++.
T Consensus 17 ~~l~V~nLp~~~t---~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPPSGS---WQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 69 (115)
T ss_dssp CCEEEEECCSSCC---TTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHH
Confidence 4467888885444 33456778899999888764 445777889988888875
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.53 E-value=3.2 Score=25.49 Aligned_cols=55 Identities=5% Similarity=-0.109 Sum_probs=38.7
Q ss_pred hhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 12 HNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..-....++||+..-.. ...+.++..+||.|..+.+. +.-+|-..+.+.+..++.
T Consensus 12 ~~p~~~l~V~nLp~~~t---e~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT---ETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SSCCSEEEEESCCTTCC---HHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34455678899886444 34467888999999888763 345777788888877764
No 94
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=75.13 E-value=4.8 Score=23.83 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=35.9
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHH
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAI 67 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~i 67 (228)
+-.+..++|++..-.. .+.+.+...+||+|..+.+. |.-+|-..+++.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~t---e~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMT---AEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCTTCC---HHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3344566788886554 34567778899999888864 3457778888888754
No 95
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.46 E-value=9.4 Score=23.17 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=38.1
Q ss_pred hhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCCc----------CeEEecChhHHHHHhh
Q psy16355 12 HNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPY----------PKVYFQTPDCTQAILS 69 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~----------~~vvv~~p~~~k~il~ 69 (228)
..-....++|++..-.. ...+.++..+||+|..+.+... -+|-..+++.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 76 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN---QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 76 (107)
T ss_dssp SSCCCCEEEESCCTTCC---HHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCC---HHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHH
Confidence 34445567888885444 3446777889999988876332 3667788888888874
No 96
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.36 E-value=10 Score=23.44 Aligned_cols=50 Identities=12% Similarity=-0.082 Sum_probs=36.4
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..+++|+..-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++.
T Consensus 12 ~l~V~nLp~~~t---e~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 12 VILAKNLPAGTL---AAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEESCCTTCC---HHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHH
Confidence 456788875444 44567888999999888863 345677788888888774
No 97
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.19 E-value=8.3 Score=23.27 Aligned_cols=54 Identities=4% Similarity=-0.012 Sum_probs=37.3
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~ 69 (228)
.-....+++++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 13 ~~~~~l~V~nlp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFR---DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCCCEEEEESCCTTCC---HHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHH
Confidence 3345567888875444 33467778899999887763 234677788888888875
No 98
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=72.02 E-value=7.5 Score=23.52 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=35.3
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
..++|||+.--. .+.+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 21 ~lfV~nLp~~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 21 NLIVNYLPQNMT---QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp EEEEESCCTTCC---HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHH
Confidence 467888885544 345677788999998777531 13577788888888774
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.53 E-value=11 Score=23.38 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=36.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
...++|||..--. -..+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 17 ~~LfV~nLp~~vt---e~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 17 RVIHIRKLPIDVT---EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CEEEECSCCTTSC---HHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 4466788886444 33467888999999888764 345777788888887775
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=71.52 E-value=6.5 Score=23.92 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=36.5
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 23 ~~~l~V~nlp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 23 GWILFVTGVHEEAT---EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp BEEEEEECCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 34567888885444 34467788999999887763 234677788888888875
No 101
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.21 E-value=9.3 Score=23.05 Aligned_cols=53 Identities=13% Similarity=-0.024 Sum_probs=37.0
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC-------cCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP-------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-------~~~vvv~~p~~~k~il~ 69 (228)
-....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 14 ~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVT---EVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCEEEEESCCTTCC---HHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCccCC---HHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 345567888875444 345677788999998777532 34677788888888775
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.11 E-value=4.2 Score=24.47 Aligned_cols=55 Identities=7% Similarity=0.060 Sum_probs=38.1
Q ss_pred hhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 12 HNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..-....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDIT---EEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCCTTEEEEESCCTTCC---HHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 34445677888885444 34467788999998887764 335666788888888774
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.92 E-value=8.1 Score=23.74 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=37.7
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
-....++|||..--. ...+.++..+||+|..+.+. +.-+|-..+.+.+..++.
T Consensus 14 p~~~l~V~nLp~~~t---e~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 14 VSPVVHVRGLCESVV---EADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCSEEEEESCCSSCC---HHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 345677888885444 34567888999999888764 335677788888877764
No 104
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=70.81 E-value=12 Score=21.47 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=34.5
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
..++++++.-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 9 ~l~V~nl~~~~~---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 9 VLYVGGLAEEVD---DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp EEEEECCCTTCC---HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCC---HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 346777775444 34567778899999888762 224677788888888774
No 105
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.50 E-value=10 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=38.1
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
+-....++++++.-.. .+.+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 14 ~~~~~l~V~nlp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLT---NNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCTTSEEEESCCTTSC---HHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCC---HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3445667888885444 344677889999998887632 34677788888888874
No 106
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=69.97 E-value=5.9 Score=24.74 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=37.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~~ 70 (228)
+..++|+|..-.. .+.+.++..+||+|..+++. +.-+|-..+++.++.++..
T Consensus 6 ~~lfV~nLp~~~t---e~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 6 GNIFIKNLDKSID---NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp CEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CEEEECCCCCCCC---HHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 3467888885444 34567778899999877653 1347888899998888743
No 107
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.95 E-value=12 Score=22.07 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=37.0
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
.-....+++++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 13 ~~~~~l~v~nlp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 75 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTT---ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 75 (95)
T ss_dssp CGGGCEEEESCCSSCC---HHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCC---HHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3345567888875444 33567778899999877752 124667788888888875
No 108
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.70 E-value=13 Score=21.99 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=35.4
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEe-eCCc-----CeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILW-LGPY-----PKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~-~~~~-----~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+. +... -+|-..+++.++.++.
T Consensus 15 ~~~l~V~nlp~~~t---~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 15 IRKLQIRNIPPHLQ---WEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp CCCEEEEEECSSSC---HHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCC---HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHH
Confidence 34567888885444 344677788999998873 3221 4677788888887774
No 109
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=69.67 E-value=8.9 Score=22.67 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=37.7
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC--------cCeEEecChhHHHHHhh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP--------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~ 69 (228)
.-....+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 14 ~~~~~l~v~nlp~~~~---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVR---EEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCC---HHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 3445567888875444 345677889999998777632 34677788888888875
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.39 E-value=9.6 Score=22.30 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=36.1
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 9 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 9 VKLFIGNLPREAT---EQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp EEEEEESCCSSCC---HHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred eEEEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 3456788875444 34467788899999887753 445777788888888874
No 111
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.33 E-value=13 Score=22.36 Aligned_cols=54 Identities=15% Similarity=0.017 Sum_probs=38.3
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
-....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 14 ~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 14 QDATVYVGGLDEKVS---EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp TTTEEEEECCCTTCC---HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 344567888875444 344677888999998877633 346777899999888853
No 112
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.02 E-value=15 Score=21.78 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=35.8
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
...+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 9 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 9 GRLFVRNLSYTSS---EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp EEEEEECCCTTCC---HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 3456778775444 335677788999998887632 34677788988888874
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.71 E-value=15 Score=21.43 Aligned_cols=51 Identities=10% Similarity=-0.045 Sum_probs=35.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC-cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP-YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 10 ~~l~V~nlp~~~t---~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 10 WKIFVGNVSAACT---SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCEEEESCCTTCC---HHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 3456788875444 344667788999998888643 45677788888888875
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.45 E-value=9.6 Score=22.99 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=36.5
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 14 ~~l~V~nLp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 14 ITLKVDNLTYRTS---PDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp CEEEEESCCTTCC---HHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred eEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4466888875444 34467788899999888763 234677788888888875
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=68.39 E-value=10 Score=23.04 Aligned_cols=56 Identities=4% Similarity=-0.029 Sum_probs=39.6
Q ss_pred hhhhhcccccccCcHH---HHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIKLSVE---FFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~---~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~~ 70 (228)
.+..++||++.....+ ....+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4557788888644211 356678888999999888764 3456777888888887753
No 116
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=68.22 E-value=13 Score=21.99 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=33.9
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
.++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 5 l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 5 VYLGSIPYDQT---EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp EEEESCCTTCC---HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred EEEECCCCCCC---HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 45677774443 34467778899999888763 234667788888888774
No 117
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.73 E-value=16 Score=21.68 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~vvv~~p~~~k~il~ 69 (228)
...+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 18 ~~l~V~nlp~~~t---~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGPNTS---LAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp SCEEEECCCSSCC---HHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 4567888875444 345677888999998887643 35666788888888775
No 118
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=67.58 E-value=11 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=33.7
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhh
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~ 69 (228)
++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 4 ~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 55 (101)
T 2hvz_A 4 YVGNLGTGAG---KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVR 55 (101)
T ss_dssp EEECCCSSCS---HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCCC---HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHH
Confidence 5677775433 34467778899998777753 345677788988888875
No 119
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.47 E-value=13 Score=22.71 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=36.8
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
-....++|+|..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 14 ~~~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSE---EEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCEEEESCCTTCC---HHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHH
Confidence 344567888885444 34466777899999887764 124677788888888874
No 120
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.08 E-value=14 Score=21.65 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=36.1
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC-cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP-YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.+..++.
T Consensus 11 ~~l~V~nLp~~~t---~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 11 TKLHVGNISPTCT---NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp EEEEEESCCSSCC---HHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHH
Confidence 4456788875444 345677888999998887643 45666788888888874
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=66.94 E-value=9.3 Score=23.05 Aligned_cols=55 Identities=7% Similarity=-0.100 Sum_probs=38.6
Q ss_pred hhhhhcccccccCc---HHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLS---VEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~---~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
.+..++|+++.... ......+.++..+||+|..+++. +.-+|-..+++.++.++.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 34567888876332 23455678888999999888763 234677788888888874
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.30 E-value=16 Score=22.27 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=35.4
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 27 ~l~V~nl~~~~t---~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 27 TVYCGGIASGLT---DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp EEEEECCSSCCC---HHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 456788875444 34566777899999888763 345777788888888774
No 123
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=66.29 E-value=16 Score=22.44 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=35.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~vvv~~p~~~k~il~ 69 (228)
...++||+..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 9 ~~l~V~nlp~~~t---~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 9 RILYIRNLPYKIT---AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp SEEEEESCCTTCC---HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 3456888875444 34467778899999888762 234677788888777764
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=65.94 E-value=14 Score=23.07 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=36.8
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcC-CeeEEeeC-----CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYK-GNFILWLG-----PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~-----~~~~vvv~~p~~~k~il~~ 70 (228)
..++|||..-.. .+.+.++..+|| +|..+.+. +.-+|-..+++.++.++..
T Consensus 30 ~l~VgnLp~~~t---e~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 30 RITMKNLPEGCS---WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEEEECSSCCCC---HHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCCC---HHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 567888886555 456778888999 78776653 4457778888888888743
No 125
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.93 E-value=14 Score=22.03 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=35.7
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCee-EEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNF-ILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~-~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
...++|++..-.. ...+.++..+||+|. .+.+.. .-+|-..+++.++.++..
T Consensus 10 ~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 10 ASLWMGDLEPYMD---ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp SEEEECSCCTTCC---HHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred cEEEEeCCCCCCC---HHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 4456888875444 345677788999988 766531 246777889888888853
No 126
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.54 E-value=12 Score=22.46 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=35.7
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 12 ~~~l~v~nLp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 1x5s_A 12 EGKLFVGGLSFDTN---EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 72 (102)
T ss_dssp CSEEEEESCCTTCC---HHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCC---HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 34566788875444 344667778899998777643 34566788888888874
No 127
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=65.43 E-value=19 Score=21.52 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=37.5
Q ss_pred hhhhhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~ 69 (228)
-....++|++.. -.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 21 ~~~~l~V~nLp~~~~t---~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVS---KEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp TTCEEEEESCCSSCCC---HHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCC---HHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 344567888875 444 34467778899999888763 445677788888888875
No 128
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.26 E-value=12 Score=22.31 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=35.3
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC------------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG------------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------------~~~~vvv~~p~~~k~il~~ 70 (228)
..++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 7 ~l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 7 GLFIKNLNFSTT---EETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CEEEESCCTTCC---HHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 356777775444 34467777899998777653 2346777889998888863
No 129
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.21 E-value=15 Score=22.64 Aligned_cols=50 Identities=6% Similarity=-0.140 Sum_probs=35.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il 68 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++
T Consensus 26 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 26 RTVFCMQLAARIR---PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp TEEEEESCCTTCC---HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 3466888875444 34467778899999888764 23466778888888877
No 130
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=64.66 E-value=18 Score=20.81 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=34.0
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----------CcCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~vvv~~p~~~k~il~ 69 (228)
.++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 7 l~V~nlp~~~t---~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 7 VHIGRLTRNVT---KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp EEEECCCTTCC---HHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 45777775444 33566777899999777652 234677788988888875
No 131
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.66 E-value=16 Score=22.57 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=38.8
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
.-....++++|..-.. .+.+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 15 ~~~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTT---DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp CSSSEEEEECCCSSCC---HHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 3345567888875444 344677778999998887643 246777899999988855
No 132
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.62 E-value=21 Score=21.68 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=36.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~------~~~vvv~~p~~~k~il~ 69 (228)
...++++|..-.. .+.+.++..+||+|..+.+.. .-+|...+++.++.++.
T Consensus 23 ~~l~V~nLp~~~t---~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 23 CRIYVGNLPPDIR---TKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp SEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHH
Confidence 4567888875444 345678889999997776532 34677788888888874
No 133
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=64.58 E-value=15 Score=22.65 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=36.6
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+.. .-+|...+++.++.++.
T Consensus 15 ~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 15 HFHVFVGDLSPEIT---TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp CEEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34567888875444 345677888999998777532 34677789999888885
No 134
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=64.57 E-value=12 Score=20.87 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=32.5
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
++|+++.-.. .+.+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 3 ~v~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 3 FVGGLSVNTT---VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEECCCSSCC---HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEecCCCCCC---HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4667764443 344667788899998777532 24566788888888874
No 135
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.50 E-value=9.6 Score=22.20 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=34.9
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il 68 (228)
..++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.+.
T Consensus 7 ~l~V~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 7 GVFVGRCTGDMT---EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEEESCCSSSC---HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEEEeCCCCCCC---HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 356788875444 34567778899999888764 34677888888887654
No 136
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=64.28 E-value=9.8 Score=23.02 Aligned_cols=52 Identities=19% Similarity=0.007 Sum_probs=36.3
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 15 ~~~l~v~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 15 DRKLFVGMLNKQQS---EEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCEEEEESCCTTCC---HHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 34566888875444 34467778899999877753 234677788888888874
No 137
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.23 E-value=10 Score=22.68 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=35.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
...+++++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 18 ~~l~v~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 18 HKLFISGLPFSCT---KEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp SCEEEESCCTTCC---HHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHH
Confidence 3466788875444 34467778899999877753 234677788888888874
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=63.87 E-value=14 Score=21.91 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=36.7
Q ss_pred hhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~~ 70 (228)
..++|++.. -.. ...+.++..+||+|..+.+ -+.-+|-..+++.++.++..
T Consensus 12 ~l~V~nlp~~~~t---~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 12 RLFIGNLPLKNVS---KEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp EEEEESSTTSCCC---HHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcccCC---HHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 456788875 444 3456778889999988776 34467778899988888853
No 139
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.66 E-value=11 Score=22.76 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=41.5
Q ss_pred ccccccchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----------CcCeEEecChhHHHHHh
Q psy16355 4 GISKGGFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----------PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~vvv~~p~~~k~il 68 (228)
|-+..+.+..-....++|++..-.. ...+.++..+|| |..+.+. +.-+|-..+++.++.++
T Consensus 4 g~~~~~~~~~~~~~l~V~nlp~~~t---~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 4 GSSGSRLPKSPPYTAFLGNLPYDVT---EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp CCCCCCCCSSSCEEEEEESCCSSCC---HHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEeCCCCcCC---HHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3445555555556678898885444 344667778899 8877753 13467778898888887
No 140
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=63.60 E-value=17 Score=20.83 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=34.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
..++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 8 ~l~v~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 66 (87)
T 3bs9_A 8 HVFVGDLSPEIT---TAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 66 (87)
T ss_dssp EEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 356777775444 344677788999998776522 24667788888888875
No 141
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=63.60 E-value=8 Score=25.94 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=36.4
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
...++|+|..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 73 ~~l~V~nLp~~~t---~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 73 WILFVTSIHEEAQ---EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp EEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHH
Confidence 3477888885444 44567888999999877653 234677788888888774
No 142
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.45 E-value=10 Score=23.27 Aligned_cols=52 Identities=8% Similarity=-0.148 Sum_probs=37.8
Q ss_pred hhhhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeCC---cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLGP---YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~vvv~~p~~~k~il~ 69 (228)
....++|||.. -.. -..+.++..+||.|..+++.. .-+|-..+++.+..+..
T Consensus 15 ~~~l~V~nLp~~~~t---e~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNL---RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCEEEEESCCCSSSH---HHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCcCC---HHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 34567888887 544 345678889999998888653 35777788888887764
No 143
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=63.10 E-value=12 Score=21.27 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=32.9
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
++|+++.-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 5 ~V~nlp~~~t---~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 5 FVGDLNVNVD---DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp EEECCCTTCC---HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCC---HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 5677765444 34566777899999877653 124677788888888875
No 144
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.08 E-value=15 Score=22.12 Aligned_cols=51 Identities=16% Similarity=-0.030 Sum_probs=35.3
Q ss_pred hhhcccccccCcHHHHHHHHHHHHH-cCCeeEEeeC--------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNN-YKGNFILWLG--------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~-yG~i~~~~~~--------~~~~vvv~~p~~~k~il~~ 70 (228)
..++|++..-.. ...+.++..+ ||+|..+.+. +.-+|-..+++.++.++..
T Consensus 11 ~l~V~nLp~~~t---~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 11 SLFVGDLTPDVD---DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CEEEECCCTTCC---HHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 356788875444 3446677788 9999877652 2346777899988888853
No 145
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=62.85 E-value=12 Score=21.67 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=35.8
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 12 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 12 GKMFVGGLSWDTS---KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp TEEEEECCCTTCC---HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 4456788875444 34566778899999877652 1246677888888888754
No 146
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.68 E-value=7.6 Score=23.92 Aligned_cols=51 Identities=4% Similarity=-0.003 Sum_probs=34.5
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. .+.+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 30 ~~l~V~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 30 KRLHVSNIPFRFR---DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp CEEEEESCCTTCC---HHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred CEEEEECCCCcCC---HHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 4456787775444 34467778899998777663 234666788888877774
No 147
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.31 E-value=11 Score=23.11 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=38.0
Q ss_pred hhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC--------cCeEEecChhHHHHHhh
Q psy16355 12 HNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP--------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~ 69 (228)
..-....++++|..-.. ...+.++..+||+|..+.+.. .-+|...+++.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~~---~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVG---WKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp CCCCSCEEEESCCTTCC---HHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 34445677888885444 345677888999987766532 34677788888888875
No 148
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.57 E-value=16 Score=21.71 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=35.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 11 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 11 NKIFVGGIPHNCG---ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CEEEEESCCSSCC---HHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 4466788875444 334677788999998877632 34677788888888875
No 149
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=61.42 E-value=19 Score=20.79 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=33.6
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAIL 68 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il 68 (228)
..++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++
T Consensus 8 ~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 8 SIYVGNVDYGAT---AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp EEEEESCCTTCC---HHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 346777775444 345677788999987776531 2467778888888887
No 150
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=61.00 E-value=17 Score=22.32 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=36.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEee-CCcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWL-GPYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+ -+.-+|-..+++.++.++.
T Consensus 32 ~~l~V~nLp~~~t---~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~ 83 (108)
T 2jvo_A 32 TRLFVRPFPLDVQ---ESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIE 83 (108)
T ss_dssp SEEEECSSCTTCC---HHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCCCCC---HHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 3456788875444 3446778899999877775 3455777788888888774
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.99 E-value=23 Score=21.40 Aligned_cols=52 Identities=6% Similarity=-0.029 Sum_probs=36.2
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCC-eeEEeeC----------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKG-NFILWLG----------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~~----------~~~~vvv~~p~~~k~il~~ 70 (228)
...++|++..-.. .+.+.++..+||+ |..+.+. +.-+|-..+++.+..++..
T Consensus 9 ~~l~V~nLp~~~t---~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 9 CRLFIGGIPKMKK---REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEEECCCTTSC---HHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCcCC---HHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 3456888875444 3456778889998 8877764 2346777899888888853
No 152
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.98 E-value=13 Score=23.57 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=36.8
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
....++|||..-.. -..+.++..+||.|..+.+. +.-+|-..+.+.+..++.
T Consensus 31 s~~LfVgNLp~~vt---e~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 31 SRVIHIRKLPIDVT---EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp CSEEEEESCCTTCC---HHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 34567888886544 34567888999999877754 345677788888777764
No 153
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=60.77 E-value=17 Score=22.61 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=35.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
..++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 9 ~l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 9 KLFIGGLNRETN---EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp EEEEECCTTTCC---HHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 345778775444 34567778899998777653 234677789999888885
No 154
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=60.22 E-value=16 Score=22.52 Aligned_cols=51 Identities=10% Similarity=-0.015 Sum_probs=35.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
...++++|..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 26 ~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 26 ANLFIYHLPQEFG---DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp CCEEEESCCSSCC---HHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHH
Confidence 4567888885544 345677788999987766532 24667788888888874
No 155
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=59.77 E-value=17 Score=22.43 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=35.6
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
..++|+|..-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++.
T Consensus 8 ~lfV~nL~~~~t---e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 8 EVTFARLNDNVR---ETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp EEEEESCCTTCC---HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCC---HHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHH
Confidence 456788875444 44567778999999887752 124678889998888874
No 156
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=59.66 E-value=21 Score=22.72 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=35.8
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
...++++|..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 47 ~~l~V~nLp~~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 47 CCLGVFGLSLYTT---ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp SCBCEETCTTSCC---HHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4466788875444 33467778899999887763 134677788888888875
No 157
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=59.56 E-value=26 Score=22.47 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=37.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
...++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 48 ~~l~V~nLp~~~t---e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 48 TSLKVDNLTYRTS---PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp CCEEEECCCSSCH---HHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3466788875444 445677889999998887642 357778899999988853
No 158
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=59.40 E-value=18 Score=22.13 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=37.1
Q ss_pred hhhhhhccccccc-CcHHHHHHHHHHHHHcCCeeEEeeC-CcCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNIK-LSVEFFKFVSEQCNNYKGNFILWLG-PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~vvv~~p~~~k~il~ 69 (228)
.....++|++..- .. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 26 ~~~~l~V~nl~~~~~t---~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVK---KSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCC---HHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCC---HHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 3356778988865 44 34567778899998777752 335666788888888774
No 159
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=58.98 E-value=23 Score=22.60 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.4
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 63 ~~~l~v~nlp~~~~---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 63 KRVLYVGGLAEEVD---DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp CCEEEEECCCTTCC---HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCC---HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34466788875444 345677789999998887632 24677788888888874
No 160
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.96 E-value=24 Score=20.90 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=37.2
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHc--CCeeEEeeC-CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNY--KGNFILWLG-PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~y--G~i~~~~~~-~~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+| |.|..+.+. +.-+|-..+++.++.++.
T Consensus 15 ~~~l~V~nLp~~~t---~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 15 VKILYVRNLMLSTS---EEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp CCEEEEESCCTTCC---HHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred cCEEEEeCCCCCCC---HHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 44567888875444 34567778899 888888753 345677788988888875
No 161
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=58.93 E-value=27 Score=21.34 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=35.4
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
..++|++..-.. ...+.++..+||+|..+.+.. .-+|...+++.++.++..
T Consensus 27 ~lfV~nLp~~~t---e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 27 KMFIGGLSWQTT---QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp CEEEESCCTTCC---HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred EEEEeCCCCCCC---HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 356777774433 334677788999998877632 346777889888888854
No 162
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=58.88 E-value=20 Score=21.92 Aligned_cols=52 Identities=8% Similarity=-0.139 Sum_probs=37.0
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
....++||+..-.. -..+.++..+||+|..+.+. +.-+|-..+.+.++.++.
T Consensus 21 s~~l~V~NLp~~~t---e~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 21 SPVVHIRGLIDGVV---EADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CSEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCCCCC---HHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 45577888885444 33467888999999887753 445777788888877764
No 163
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=58.82 E-value=17 Score=21.95 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=35.5
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
....+++++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 29 ~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 29 GGKLLVSNLDFGVS---DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp SEEEEEESCCTTCC---HHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 34467788875444 34467778899999776653 134667788888888875
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=58.82 E-value=22 Score=24.06 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=35.0
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-----CcCeEEecChhHHHHHhhc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-----PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~~~~vvv~~p~~~k~il~~ 70 (228)
..+||+..--. .+.+.++..+||+|.++++. +.-+|-..+++.++.....
T Consensus 49 l~VgNL~~~vt---ed~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 49 IIVENLFYPVT---LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EEECSCCSCCC---HHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCcCCCCC---HHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 34788875444 33467788999999887763 2357777888888877753
No 165
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=58.80 E-value=20 Score=25.35 Aligned_cols=53 Identities=11% Similarity=-0.069 Sum_probs=38.5
Q ss_pred hhhhhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~ 69 (228)
-....++|++.. -.. ...+.++.++||+|..+.+. +.-+|-..+++.++.++.
T Consensus 33 ~~~~l~V~nLp~~~~t---e~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 33 GNSVLLVSNLNPERVT---PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 90 (229)
T ss_dssp CCSEEEEESCCTTTCC---HHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCC---HHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 344567888876 433 34566778899999888764 445788899999988884
No 166
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.62 E-value=19 Score=21.67 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
....+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 16 ~~~l~V~nlp~~~t---~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 16 IGKLFVGGLDWSTT---QETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSEECCBSCCTTCC---HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34567888875444 344677788999997776532 246777889888888854
No 167
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.53 E-value=19 Score=21.44 Aligned_cols=50 Identities=6% Similarity=-0.120 Sum_probs=34.1
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 29 ~l~V~nlp~~~~---~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 81 (101)
T 2la4_A 29 TAYIGNIPHFAT---EADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIV 81 (101)
T ss_dssp EEEEESCCTTCC---HHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred EEEEcCCCcccC---HHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 456788875444 34567778899999887763 334666678887777763
No 168
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=58.45 E-value=22 Score=21.37 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=36.3
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 13 ~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 13 AIKLFIGQIPRNLD---EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp CEEEEEESCCTTCC---HHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34467888875444 345677888999998877633 24666788888888874
No 169
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.08 E-value=10 Score=22.74 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=35.5
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 12 ~~~l~V~nLp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 12 KRVLYVGGLAEEVD---DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp CSCEEEESCCSSCC---HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34456788875444 345677788999998777632 24566688888888874
No 170
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.97 E-value=21 Score=20.88 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=34.8
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
..+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 7 ~l~v~nlp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 7 GLYVGSLHFNIT---EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp EEEEESCCTTCC---HHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 355777775443 344677788999998777532 34677788988888875
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.67 E-value=22 Score=21.29 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=36.4
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
...++++|..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 16 ~~l~v~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 16 SDLIVLGLPWKTT---EQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCEEEESCCSSCC---HHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CEEEEEcCCCcCC---HHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4467788875444 344677788999997776522 246777899999988864
No 172
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=57.60 E-value=15 Score=22.98 Aligned_cols=49 Identities=8% Similarity=0.052 Sum_probs=34.5
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il 68 (228)
..++|++..-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++
T Consensus 38 ~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 38 SVYVGNVDYGST---AQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp EEEEEEECTTCC---HHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 456788775444 34467778899999777652 13467778899888888
No 173
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.91 E-value=10 Score=22.86 Aligned_cols=52 Identities=8% Similarity=0.018 Sum_probs=36.4
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 15 ~~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 15 VVNLYVKNLDDGID---DERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp CCCEEEECCCTTCC---HHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHH
Confidence 34567888875444 34466777899999877754 234677788988888875
No 174
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=56.74 E-value=17 Score=22.25 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=35.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 27 ~~l~V~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 27 MRLYVGSLHFNIT---EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp EEEEEECCCSSCC---HHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 4466888875444 33467777899999777653 234677789988888874
No 175
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.28 E-value=15 Score=22.00 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=35.5
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 8 ~~~l~V~nlp~~~~---~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 8 LRSVFVGNIPYEAT---EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HSCEEEESCCTTSC---HHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHH
T ss_pred ccEEEEeCCCCcCC---HHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 34566788875444 34467778899998776653 234677788888888885
No 176
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.15 E-value=13 Score=21.34 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=33.2
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
.++|+++.-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 8 l~v~nlp~~~t---~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 8 LYIRGLQPGTT---DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEESCCTTCC---HHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 45677765444 344667778999998877532 24677788888888774
No 177
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=55.09 E-value=20 Score=22.91 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=36.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 43 ~~l~V~nLp~~~~---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 43 RNLMVNYIPTTVD---EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp SEEEEESCSTTCC---HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3466788875444 34467778889999777652 1346777899988888853
No 178
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=54.98 E-value=9.9 Score=23.27 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCeeEEeeCC-cCeEEecChhHHHHHhh
Q psy16355 31 FFKFVSEQCNNYKGNFILWLGP-YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 31 ~~~~~~~~~~~yG~i~~~~~~~-~~~vvv~~p~~~k~il~ 69 (228)
-..-+.++...||.+..-|+-. .-.+++.+|+.+++++.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 3456778889999888777754 46888899999999996
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=54.88 E-value=19 Score=28.71 Aligned_cols=52 Identities=6% Similarity=0.002 Sum_probs=37.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
...+||||..-.. ...+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 103 ~~lfV~nL~~~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 103 KTLFVARVNYDTT---ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 3567888875444 34567778889999887763 2357788899988888843
No 180
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.41 E-value=37 Score=21.26 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=36.7
Q ss_pred hhhhc--ccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---cCeEEecChhHHHHHhhc
Q psy16355 16 TKRKL--GLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~--g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~vvv~~p~~~k~il~~ 70 (228)
...++ |++..-.. .+.+.+...+||.|..+.+.. .-+|-..+++.++.++..
T Consensus 26 ~~L~V~Ng~L~~~~t---e~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 26 QSLVVANGGLGNGVS---RNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SEEEEETCTGGGTCC---HHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCC---HHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 44677 66775444 355678889999998887642 356777888888888753
No 181
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.08 E-value=20 Score=21.28 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=34.6
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCee-EEeeC---CcCeEEecChhHHHHHhh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNF-ILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~-~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
......++|++..-.. ...+.++..+||+|. .+..+ +.-+|-..+++.+..++.
T Consensus 17 ~~~~~l~V~nL~~~~t---~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 17 PLAADVYVGNLPRDAR---VSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCCCEEEEECCCTTCC---HHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCc---HHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Confidence 3455677888875444 345677788999873 33222 345667788888877764
No 182
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=53.77 E-value=26 Score=23.02 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=37.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
...++++|..-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++..
T Consensus 40 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 40 CTLYVGNLSFYTT---EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp CEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4466788875444 34567888999999888762 1237778899998888853
No 183
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=53.61 E-value=16 Score=22.67 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=35.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
..++|++..-.. .+.+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 42 ~l~V~nlp~~~t---~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 42 NLFIYHLPQEFT---DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEEEECSCTTCC---HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 356777775444 345677788999998877632 246677888888888753
No 184
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.45 E-value=11 Score=22.72 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=36.3
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 15 ~~~l~V~nlp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 15 NATIRVTNLSEDTR---ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SEEEEEESCCTTCC---HHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 34467888875444 334667778999998777532 24677788998888875
No 185
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=53.44 E-value=21 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.8
Q ss_pred hhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhh
Q psy16355 14 FQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~ 69 (228)
-....++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 72 ~~~~l~V~nl~~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 128 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGN---KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVR 128 (150)
T ss_dssp TSCEEEEESCCSCCS---CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHH
Confidence 345577888875433 23456777889999888763 345677788888888775
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=52.77 E-value=27 Score=24.32 Aligned_cols=50 Identities=10% Similarity=-0.110 Sum_probs=36.1
Q ss_pred hhhccccc-ccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLN-IKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~-~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~ 69 (228)
..++|||. .--. ...+.++..+||+|..+++. +.-+|...+++.+..++.
T Consensus 6 ~l~V~nL~~~~~~---~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 6 VLMVYGLDQSKMN---CDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEEEECCCTTTCC---HHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcccCC---HHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 34678887 4333 23567788999999988863 346788889988888774
No 187
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=52.22 E-value=22 Score=22.91 Aligned_cols=49 Identities=6% Similarity=0.004 Sum_probs=34.3
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC-----cCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP-----YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-----~~~vvv~~p~~~k~il~ 69 (228)
..+||+..--. ...+.++..+||+|..+.+.. .-+|...+++.++....
T Consensus 31 I~V~NL~~~vt---e~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~ 84 (130)
T 3zzy_A 31 IIVENLFYPVT---LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 84 (130)
T ss_dssp EEEESCCSCCC---HHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHH
T ss_pred EEECCCCCCCC---HHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Confidence 34788875444 334678899999998777642 25777788887777764
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=51.43 E-value=32 Score=22.46 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=36.7
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
..++|+++.-.. ...+.++..+||+|..+.+.. .-+|...+++.++.++..
T Consensus 5 ~l~v~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 5 KMFIGGLNWDTT---EDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp EEEECSCCTTCC---HHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 346788875444 345677788999998887632 346778899999988865
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.42 E-value=14 Score=20.62 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=30.8
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
++|+++.-.. ...+.+...+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 4 ~v~nlp~~~t---~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 4 FIGGLSWQTT---QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp EEESCCSSCC---SHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred EEeCCCCCCC---HHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 4677764333 233567778899887665422 235556788888877754
No 190
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.41 E-value=20 Score=21.06 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=34.4
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEE-eeC---------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFIL-WLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~-~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
..++|++..-.. ...+.++..+||+|..+ ++. +.-+|-..+++.++.++..
T Consensus 7 ~l~V~nLp~~~t---~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 7 GIFIGNLDPEID---EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEEEECCCTTCC---HHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 345777775444 34567778899988655 432 2346777899999888863
No 191
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=51.34 E-value=32 Score=23.72 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=36.8
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++.++||+|..+.+. +.-+|-..+++.++.++.
T Consensus 29 ~~l~V~nLp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 29 SRVYVGSIYYELG---EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp TEEEEECCCTTCC---HHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCCC---HHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 3467788875444 34567788999999887763 235677889999888885
No 192
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=51.31 E-value=38 Score=22.14 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=37.0
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
....++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 70 ~~~l~v~nl~~~~~---~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 70 MTSLKVDNLTYRTS---PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp CCEEEEESCCTTCC---HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34566888875444 344667778999998887643 246777889888888853
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=50.61 E-value=28 Score=22.67 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=34.5
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
.++|+++.-.. ...+.++.++||+|..+.+.. .-+|-..+++.++.++.
T Consensus 5 l~v~nlp~~~~---~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 62 (167)
T 1fxl_A 5 LIVNYLPQNMT---QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62 (167)
T ss_dssp EEEESCCTTCC---HHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEcCCCCCCC---HHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHH
Confidence 45677774433 344677888999998776532 34677899999999885
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=50.54 E-value=40 Score=20.51 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCeeEEeeC-----------CcCeEEecChhHHHHHhh
Q psy16355 31 FFKFVSEQCNNYKGNFILWLG-----------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 31 ~~~~~~~~~~~yG~i~~~~~~-----------~~~~vvv~~p~~~k~il~ 69 (228)
..+.+.+...+||+|..+.+. +.-+|-..+++.++.+..
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~ 77 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQ 77 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHH
Confidence 456678888999999888863 223566688887777764
No 195
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=49.73 E-value=33 Score=21.38 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=35.1
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 36 ~~l~V~nlp~~~t---~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 36 AKLLVSNLDFGVS---DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp EEEEEESCCSSCC---HHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3466788875444 33467778899998777652 234677788888888875
No 196
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=49.32 E-value=37 Score=23.00 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=36.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
...+++++..-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++.
T Consensus 89 ~~l~V~nLp~~~t---e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 89 AKLLVSNLDFGVS---DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 147 (177)
T ss_dssp EEEEEECCCSCCC---HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHH
Confidence 3566788775444 34467778889999887763 234677789998888875
No 197
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.08 E-value=10 Score=22.74 Aligned_cols=58 Identities=10% Similarity=-0.057 Sum_probs=36.5
Q ss_pred cchhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEee-----CCcCeEEecChhHHHHHhh
Q psy16355 9 GFIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWL-----GPYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-----~~~~~vvv~~p~~~k~il~ 69 (228)
+-...-....++++|..-.. ...+.++..+||+|..... -+.-+|-..+++.++.++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t---~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSAT---EETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCC---HHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCC---HHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 33334455677888885444 3345667778998743322 1234677788988888875
No 198
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.60 E-value=24 Score=21.72 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=36.6
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
....++|+|..-.. ...+.++..+||+|..+.+.. .-+|...+++.++.++..
T Consensus 27 ~~~l~V~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 27 FRKLFIGGLSFETT---EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HTEEEEECCTTCCC---HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 34467888875444 344677788999987776532 346777889988888855
No 199
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=48.42 E-value=20 Score=21.34 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=36.0
Q ss_pred hhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeE--------EeeC---------CcCeEEecChhHHHHHhh
Q psy16355 11 IHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFI--------LWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 11 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~--------~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
+.+......+|++..-.. ...+.++..+||+|.. +.+. +.-+|...+++.++.++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVT---IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp SCCCCSEEEEECCCSSCC---HHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCC---HHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 344445567888875544 3456777889998866 4432 134566678888877774
No 200
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=48.01 E-value=19 Score=21.49 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=34.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 10 ~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDVRMD---ETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEECCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 3456788875444 33466778999999877652 234667778888888876
No 201
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=47.81 E-value=38 Score=22.08 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=34.8
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
.++|+++.-.. ...+.++.++||+|..+.+. +.-+|-..+++.++.++.
T Consensus 6 l~v~nlp~~~~---~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (168)
T 1b7f_A 6 LIVNYLPQDMT---DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63 (168)
T ss_dssp EEEECCCTTCC---HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCC---HHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHH
Confidence 45677775443 34467788899999887753 235677789999988885
No 202
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.08 E-value=9.4 Score=23.95 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=36.4
Q ss_pred hhhhhccccccc-CcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIK-LSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
....++|||..- .. -..+.++..+||+|..+++. +.-+|-..+++.+..++.
T Consensus 25 ~~~l~V~NLp~~~~t---e~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYS---DSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCEEEEESCCCSSCC---SHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CCEEEEeCCCCccCC---HHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 345678888863 33 23466788999999888864 334677788888877764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.72 E-value=46 Score=20.12 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhhc
Q psy16355 32 FKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~~ 70 (228)
...+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 45677888999999888763 2357777899888888765
No 204
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=46.24 E-value=26 Score=22.81 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=33.7
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhh
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~ 69 (228)
++|+++.-.. ...+.++.++||+|..+.+. +.-.|-..+++.+..++.
T Consensus 4 ~V~nlp~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 4 YVGNLDKAIT---EDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp EEEEEETTCC---HHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred EECCCCCcCC---HHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 4667764433 34567788999999887763 235777789988888884
No 205
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.14 E-value=9.1 Score=23.61 Aligned_cols=52 Identities=10% Similarity=-0.030 Sum_probs=34.2
Q ss_pred hhhhcccccccCcHHHHHHHH---HHHHHcCCeeEEeeCC------------cCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVS---EQCNNYKGNFILWLGP------------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~---~~~~~yG~i~~~~~~~------------~~~vvv~~p~~~k~il~~ 70 (228)
...++|+|+.-... +.+. ++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 16 ~~l~V~nLp~~~~~---~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 16 NLVFVVGLSQRLAD---PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp SCEEEEEECTTTCC---HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCCCH---HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 34567888754331 2234 7778999998777532 345667888888888753
No 206
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=45.09 E-value=39 Score=22.37 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=36.1
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcC--CeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYK--GNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
..++|+|..-.. ...+.++..+|| +|..+.+. |.-+|-..+++.++.++..
T Consensus 57 ~lfVgnLp~~~t---e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 57 AVYVGSFSWWTT---DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EEEEECCCTTCC---HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 567888875544 345677788999 88877752 1347777888888888754
No 207
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.06 E-value=33 Score=23.18 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=39.1
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
.-....++|+|+.-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++..
T Consensus 11 ~~~~~l~V~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETT---DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGGGEEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 3445677888885444 34567788899998776642 1346888999999998855
No 208
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.82 E-value=36 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCeeEEeeC-----CcCeEEecChhHHHHHhh
Q psy16355 32 FKFVSEQCNNYKGNFILWLG-----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~-----~~~~vvv~~p~~~k~il~ 69 (228)
-+.+.+...+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHH
Confidence 45678888999998777652 334666678888777774
No 209
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.66 E-value=41 Score=21.38 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=33.0
Q ss_pred hcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---C-cCeEEecChhHHHHHhh
Q psy16355 19 KLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---P-YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~-~~~vvv~~p~~~k~il~ 69 (228)
.+||+..-.. ...+.++..+||.|..+++. + .-+|-..+++.+..+..
T Consensus 29 ~V~NL~~~vt---~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~ 80 (124)
T 2e5i_A 29 SIQNPLYPIT---VDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKA 80 (124)
T ss_dssp EEESCCSCCC---HHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHH
T ss_pred EEcCcCCCCC---HHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3688875444 33578889999998776652 3 25677788877776664
No 210
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=43.41 E-value=23 Score=20.61 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=31.3
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcC--CeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYK--GNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
.++||+..-.. ...+.++..+|| +|..+.+.. .-+|-..+++.++.++.
T Consensus 4 l~V~nL~~~~t---~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 4 LYIGNLTWWTT---DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp CEEESCCTTCC---HHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EEEeCCCCCCC---HHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 35777775444 345667788999 876665421 24666778888877763
No 211
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=43.33 E-value=22 Score=20.93 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=33.5
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcC-CeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYK-GNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
.++++|+.-.. -..+.++.++|| +|..+++. +.-+|-..+++.++.++..
T Consensus 4 i~v~nLp~~~t---e~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 4 VMLRMLPQAAT---EDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp EEEETCCSSCC---HHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred EEEeCCCCCCC---HHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 45777775444 345667778899 67666542 1246778899999888753
No 212
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=43.14 E-value=11 Score=22.97 Aligned_cols=62 Identities=11% Similarity=0.237 Sum_probs=31.5
Q ss_pred cccccccCcHHHHHHHHHHHHHcCCeeEEeeCCcCeEEecChhHHHHHhhcC--CCCCchhhhh
Q psy16355 20 LGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSST--EHIDKSTEYA 81 (228)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~vvv~~p~~~k~il~~~--~~~~k~~~~~ 81 (228)
.|+++.-+..-.....++..-+.++.+.+|+-+...|.-++|+.-...|... +.|.-+.+|.
T Consensus 25 vGSvhApd~e~Al~~Ar~~f~RR~e~vsiWVVp~~~I~~~~p~e~~~~f~~~~dK~YR~~t~Y~ 88 (96)
T 3egr_A 25 CGSLHATDAQQALHMARDVYTRRQEGVSIWVVPSTAITASAPEEKPELFDPMADKIYRHPTFYQ 88 (96)
T ss_dssp EEEEECSSHHHHHHHHHHHTTTTCTTCEEEEEEGGGCEECCC----------------------
T ss_pred eecccCCCHHHHHHHHHHHhccccCCceEEEeeHHHeeecChhhcccccCCCCCCcccCccccc
Confidence 5667766665555555566556667889999999899999998877777543 3344444443
No 213
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=42.70 E-value=48 Score=24.08 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=39.3
Q ss_pred hhhhhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~vvv~~p~~~k~il~ 69 (228)
....++|+|.. ....++-..+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 70 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHH
Confidence 44567888884 44444445577889999999887743 245777889988888874
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=42.67 E-value=8.4 Score=23.64 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCeeEEeeCC-cCeEEecChhHHHHHhhc
Q psy16355 32 FKFVSEQCNNYKGNFILWLGP-YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 32 ~~~~~~~~~~yG~i~~~~~~~-~~~vvv~~p~~~k~il~~ 70 (228)
..-+.++...||.+..-|+.. .-.+++.+|+.+++++..
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 455678888999888888754 468888999999999963
No 215
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.45 E-value=40 Score=19.82 Aligned_cols=48 Identities=4% Similarity=-0.079 Sum_probs=33.4
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..++|++ ... ...+.++..+||+|..+.++ +.-+|-..+++.+..++.
T Consensus 17 ~l~V~n~-~~t----~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~ 67 (97)
T 1x5p_A 17 TLYVYGE-DMT----PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVA 67 (97)
T ss_dssp EEEEECS-SCC----HHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEcCC-CCC----HHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 4566774 333 34567788999999888874 335667788888888874
No 216
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=42.13 E-value=46 Score=22.61 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=35.6
Q ss_pred hhcccccc-cCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhh
Q psy16355 18 RKLGLLNI-KLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 18 ~~~g~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~ 69 (228)
.++|++.. -.. ...+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 6 l~v~nlp~~~~~---~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 6 LLVSNLNPERVT---PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 59 (198)
T ss_dssp EEEECCCSSSCC---HHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHH
T ss_pred EEEeCCCcccCC---HHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 45677775 333 34566778899999888764 446788899999888875
No 217
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=41.96 E-value=43 Score=22.00 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=34.6
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC--------cCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP--------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~ 69 (228)
..+++++..-.. ...+.+..++||+|..+.+.. .-+|-..+++.++.++.
T Consensus 97 ~l~v~nl~~~~t---~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 97 KLFIGMISKKCT---ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp EEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred eEEEcCCCCcCC---HHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 356677765443 345677888999988777532 14677788888888874
No 218
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.52 E-value=52 Score=19.17 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=34.0
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC----cCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP----YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----~~~vvv~~p~~~k~il~ 69 (228)
..++|++..-.. ...+.++..+||+|..+..-. .-+|-..+++.++.++.
T Consensus 10 ~l~V~nl~~~~t---~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPRGVD---SAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS 63 (94)
T ss_dssp EEEEECCCTTCC---HHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT
T ss_pred EEEEECCCCCCC---HHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh
Confidence 456788875444 345677788999988763322 23566688888888875
No 219
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.26 E-value=37 Score=20.38 Aligned_cols=53 Identities=13% Similarity=-0.041 Sum_probs=36.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeE-EeeC--------CcCeEEecChhHHHHHhhcC
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFI-LWLG--------PYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~-~~~~--------~~~~vvv~~p~~~k~il~~~ 71 (228)
...++|+|..-.. ...+.++..+||+|.. +.+. +.-+|-..+++.++.++..+
T Consensus 16 ~~l~V~nLp~~~t---e~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~ 77 (104)
T 1wg5_A 16 GFVRLRGLPFGCS---KEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 77 (104)
T ss_dssp CEEEEESCCTTCC---HHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 4467888886555 4456778889998754 4331 34577889999999998654
No 220
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=41.16 E-value=47 Score=23.07 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=36.3
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
..++|||..-.. .+.+.++.++||+|..+++. +.-+|-..+++.+..++..
T Consensus 17 tlfVgnLp~~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 17 SLYVGDLHPDVT---EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 457888885444 34567778899999877652 1347788899888888743
No 221
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=40.77 E-value=46 Score=23.70 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=36.4
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcC--CeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYK--GNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
..++|||..-.. ...+.++..+|| .|..+.+.. .-+|...+.+.++.++..
T Consensus 70 ~lfVgnL~~~~t---e~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 70 ALYIGNLTWWTT---DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp EEEEESCCTTCC---HHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT
T ss_pred EEEEeCCCCCCC---HHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 367888875554 345677788999 898777522 247788899888888853
No 222
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.28 E-value=27 Score=21.38 Aligned_cols=51 Identities=6% Similarity=0.029 Sum_probs=35.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC--------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP--------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~ 69 (228)
...+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 26 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 26 TNLYISNLPLSMD---EQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp TEEEEESCCTTCC---HHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 3466788875444 344677788999998777532 34677788888888875
No 223
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=39.11 E-value=38 Score=23.33 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=36.2
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhhc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~~ 70 (228)
.++|+++.-.. ...+.++..+||+|..+++. |.-+|-..+++.++.++..
T Consensus 112 l~V~nLp~~~t---~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 112 VYIKGFPTDAT---LDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp EEEECCCTTCC---HHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EEecCCCCcCC---HHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 56788875444 45677888999998777653 3456777888888888854
No 224
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=38.76 E-value=22 Score=20.56 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=31.3
Q ss_pred hhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhhc
Q psy16355 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 18 ~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~~ 70 (228)
.++|++..-.. ...+.++..+||+|..+.+.. .-+|-..+++ +..++..
T Consensus 4 l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 4 IYVGNLVYSAT---SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp EEEEEECTTSS---HHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred EEECCCCCCCC---HHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 35677764433 334667778899997777632 2456678888 7666643
No 225
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=38.02 E-value=67 Score=19.95 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeC-----CcCeEEecChhHHHHHhh
Q psy16355 29 VEFFKFVSEQCNNYKGNFILWLG-----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 29 ~~~~~~~~~~~~~yG~i~~~~~~-----~~~~vvv~~p~~~k~il~ 69 (228)
.+..+.+.+...+||.|..+.+. |.-+|-..+++.+..+..
T Consensus 28 ~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~ 73 (114)
T 3s6e_A 28 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVN 73 (114)
T ss_dssp HHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHH
Confidence 45666778888999999888763 334666678877777664
No 226
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.88 E-value=50 Score=20.04 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=34.6
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCee--------EEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNF--------ILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~--------~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
....++|++..-.. ...+.++..+||+|. .+.+.. .-+|-..+++.++.++.
T Consensus 15 ~~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 15 NSAIYVQGLNDSVT---LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCEEEEECCCTTCC---HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCEEEEcCCCCCCC---HHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 34567888875444 345678888999986 344321 34677788888888875
No 227
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=36.75 E-value=58 Score=18.40 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHc----C-------CeeEEeeC---CcCeEEecChhHHHHHh
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNY----K-------GNFILWLG---PYPKVYFQTPDCTQAIL 68 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~y----G-------~i~~~~~~---~~~~vvv~~p~~~k~il 68 (228)
....++||+..-.. .+.+.++..+| | +|..+.+. +.-+|-..+++.++.++
T Consensus 6 ~~~l~V~nLp~~~t---~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 6 ARRLYVGNIPFGIT---EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGEEEEESCCTTCC---HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 34467888875443 23445556666 8 88887764 34567778888888887
No 228
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=35.41 E-value=74 Score=19.20 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=25.0
Q ss_pred HHHHHHH-HHcCCeeEEeeCC--------cCeEEecChhHHHHHhh
Q psy16355 33 KFVSEQC-NNYKGNFILWLGP--------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 33 ~~~~~~~-~~yG~i~~~~~~~--------~~~vvv~~p~~~k~il~ 69 (228)
+.+.+.. .+||+|..+.+.. .-+|-..+++.+..+..
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~ 86 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 86 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHH
Confidence 3455566 9999998888642 23555677877777664
No 229
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.37 E-value=36 Score=20.89 Aligned_cols=53 Identities=8% Similarity=-0.065 Sum_probs=35.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCe---eEEee------CCcCeEEecChhHHHHHhhcC
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGN---FILWL------GPYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i---~~~~~------~~~~~vvv~~p~~~k~il~~~ 71 (228)
...++|+|..-.. ...+.++..+||.| +++-. -+.-+|-..+++.++.++..+
T Consensus 16 ~~l~V~nLp~~~t---~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 77 (114)
T 2cpy_A 16 VCAHITNIPFSIT---KMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 77 (114)
T ss_dssp CEEEEESCCTTSC---HHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGC
T ss_pred cEEEEeCcCCcCC---HHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 4467888875544 33467777889988 44421 134577788999999988553
No 230
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=33.53 E-value=32 Score=20.51 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=34.0
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCC--eeEEeeC---------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKG--NFILWLG---------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~--i~~~~~~---------~~~~vvv~~p~~~k~il~~ 70 (228)
.-.+++||..-.. -+.+.++.++||+ +..+++. |.-+|-..+++.++.++..
T Consensus 10 ~tlfV~nL~~~~t---ee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 10 DTIILRNIAPHTV---VDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp CEEEEESCCTTCC---HHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred CEEEEeCCCCcCC---HHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 3456788876555 4556778889995 4444432 1246777888888888743
No 231
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.78 E-value=56 Score=19.38 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=36.2
Q ss_pred chhhhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHh
Q psy16355 10 FIHNFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAIL 68 (228)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il 68 (228)
.+..-....++|+|..-.. ...+.++..+|| |..+.+.. .-+|-..+++.++.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t---~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTV---QGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp CCSSSCEEEEEESCCTTCC---HHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred CCCCCCeEEEEeCCCCCCC---HHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 3334445567888875444 334667778887 77766531 2467778999988888
No 232
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=32.36 E-value=67 Score=20.97 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=34.2
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
...++++++.-.. ...+.+...+||+|..+.+.. .-+|-..+++.+..++.
T Consensus 95 ~~l~v~nlp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 95 HKLFIGGLPNYLN---DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp TCEEEECCCTTCC---HHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred CEEEEEcCCCcCC---HHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4456777775443 445677788999987776522 24566678888887775
No 233
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.19 E-value=32 Score=21.03 Aligned_cols=52 Identities=8% Similarity=0.018 Sum_probs=33.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCe----eEEeeC-----CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGN----FILWLG-----PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i----~~~~~~-----~~~~vvv~~p~~~k~il~~ 70 (228)
...++|++..-.. ...+.++..+||+| +.+... +.-+|-..+++.++.++..
T Consensus 26 ~~l~V~nLp~~~t---~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 26 KVLYLKNLSPRVT---ERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp SEEEEECCCTTCC---HHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 4567888875444 33456777888976 444431 2346777889888888753
No 234
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=31.63 E-value=67 Score=23.46 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=36.5
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~vvv~~p~~~k~il~ 69 (228)
...++|+++.-.. ...+.++..+||+|..+.+. +.-+|...+++.++.++.
T Consensus 42 ~~l~V~nLp~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 42 TTVLVKNLPKSYN---QNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp CEEEEEEECTTCC---HHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH
Confidence 3456777775444 34567788899999777652 345778899999999884
No 235
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.99 E-value=35 Score=20.92 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=33.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC-----------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG-----------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----------~~~~vvv~~p~~~k~il~ 69 (228)
...++|+|..-.. .+.+.++..+||+|....+. +.-+|...+++.++.++.
T Consensus 9 ~~lfVgnLp~~~t---e~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 9 RKVFVGGLPPDID---EDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp CCEEEECCCTTCC---HHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CEEEEcCCCCCCC---HHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 4567888885544 34567778899998732221 124566788888887774
No 236
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=29.54 E-value=94 Score=22.48 Aligned_cols=50 Identities=18% Similarity=-0.034 Sum_probs=34.9
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC----CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG----PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~vvv~~p~~~k~il~ 69 (228)
..+++|+..... ...+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 209 ~l~v~nl~~~~~---~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~ 262 (282)
T 3pgw_A 209 ILFLTNLPEETN---ELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 262 (282)
T ss_pred EEEEeCCCCcCC---HHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHH
Confidence 367777775443 45667788899999888763 234666688888887775
No 237
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=29.12 E-value=31 Score=20.57 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=32.9
Q ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC----------cCeEEecChhHHHHHh
Q psy16355 13 NFQTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP----------YPKVYFQTPDCTQAIL 68 (228)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----------~~~vvv~~p~~~k~il 68 (228)
.-....++|++..-.. ...+.++..+|| |..+.+.. .-+|-..+++.++.++
T Consensus 17 ~~~~~l~V~nLp~~~t---~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVT---EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ---CEEEESCCSSCCS---SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCC---HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 3344466888874333 223566777899 88877632 3467778888888887
No 238
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=29.08 E-value=42 Score=19.06 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHHHHHHhhcC
Q psy16355 208 KTYYRELEVMKKFTLSYSELY 228 (228)
Q Consensus 208 ~~~~~~~~~~~~~~~~~i~~~ 228 (228)
.++++.+.++...+.++|++|
T Consensus 21 ~kLr~sr~RFQ~~Mq~lieKY 41 (81)
T 3r45_C 21 QKLRASRRRFQRRMQRLIEKY 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 556667777777778877765
No 239
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.83 E-value=22 Score=21.01 Aligned_cols=53 Identities=15% Similarity=0.011 Sum_probs=33.4
Q ss_pred hhhhhcccccccCcHHHHHHHHHHHHHcCCeeEEe---e------CCcCeEEecChhHHHHHhhc
Q psy16355 15 QTKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILW---L------GPYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~---~------~~~~~vvv~~p~~~k~il~~ 70 (228)
....+++++..-.. ...+.++..+||+|.... - -+.-+|-..+++.++.++..
T Consensus 15 ~~~l~v~nLp~~~t---~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 15 PTIIKVQNMPFTVS---IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SEEEEEESCCTTCC---HHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 34467888875444 344667788999763211 1 12346777889888888743
No 240
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.20 E-value=94 Score=17.85 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=32.3
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCC-eeEEe--eCCcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKG-NFILW--LGPYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~-i~~~~--~~~~~~vvv~~p~~~k~il~ 69 (228)
...++|++..-.. ...+.++..+||+ +-... --+.-+|-..+++.++.++.
T Consensus 9 ~~l~V~nLp~~~t---~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 9 NKLYIGNLSPAVT---ADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCEEEECCCTTCC---HHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHH
T ss_pred cEEEEeCCCCCCC---HHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3456788875444 3446677889998 32222 23445666788888887774
No 241
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=26.62 E-value=54 Score=20.46 Aligned_cols=48 Identities=4% Similarity=-0.079 Sum_probs=32.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---CcCeEEecChhHHHHHhh
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~vvv~~p~~~k~il~ 69 (228)
..++|++ ... ...+.++..+||+|..+.+. +.-+|...+++.+..++.
T Consensus 41 ~lfVgnl-~~t----e~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 41 TLYVYGE-DMT----PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp EEEEECS-SCC----HHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred EEEEcCC-CCC----HHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3556763 333 34567778899998777764 345677788888887774
No 242
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=26.41 E-value=99 Score=20.71 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=33.9
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeCC---------cCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGP---------YPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~vvv~~p~~~k~il~ 69 (228)
...+++++..-.. ...+.++..+||+|..+.+.. .-+|-..+++.+..++.
T Consensus 115 ~~l~v~nl~~~~~---~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 115 HKLFIGGLPNYLN---DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CEEEEECCCTTCC---HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3456777775333 345677788999997776532 23566778888887775
No 243
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=25.36 E-value=77 Score=20.49 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=35.6
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhhc
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~~ 70 (228)
...++++|..-.. .+.+.++.++|| ++.+.+. +.-+|-..+++.++.++..
T Consensus 47 ~~lfV~nLp~~~t---e~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~ 105 (139)
T 2hgn_A 47 HCVHMRGLPYKAT---ENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 105 (139)
T ss_dssp CCEECCSCCTTCC---HHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhh
Confidence 3457888886555 455678888999 5566653 2357788889999888843
No 244
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=25.34 E-value=97 Score=19.31 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=35.1
Q ss_pred hhhhhcccccccC--cHHHHHHHHHHHHHcCCeeEEeeC-------------CcCeEEecChhHHHHHhh
Q psy16355 15 QTKRKLGLLNIKL--SVEFFKFVSEQCNNYKGNFILWLG-------------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 15 ~~~~~~g~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~-------------~~~~vvv~~p~~~k~il~ 69 (228)
++..++.|+.... ..+....+.+.+.+||+|..+++. +.-+|-..+++.+..+..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~ 89 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ 89 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH
Confidence 3445566665321 124667788889999999877642 123566678887777764
No 245
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.41 E-value=67 Score=20.24 Aligned_cols=52 Identities=13% Similarity=-0.008 Sum_probs=34.2
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCe----eEEee-----C---CcCeEEecChhHHHHHhhcC
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGN----FILWL-----G---PYPKVYFQTPDCTQAILSST 71 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i----~~~~~-----~---~~~~vvv~~p~~~k~il~~~ 71 (228)
..++++|..-.. .+.+.++.++||+| ..+.+ + +.-+|...+++.++.++..+
T Consensus 25 ~v~V~nLp~~~t---e~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~ 88 (123)
T 2dha_A 25 IVRMRGLPFTAT---AEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKH 88 (123)
T ss_dssp EEEECSCCTTCC---HHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTT
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhC
Confidence 467788875554 45567888889875 12222 1 23477788999999888653
No 246
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=24.36 E-value=1.7e+02 Score=20.34 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred chhhhhhhhhcCcCCHHHHHHhHHHHHHHHHHHHHHHhhhhCCC--ceehHHhHHH
Q psy16355 97 QKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNS--GFDVFPIMKL 150 (228)
Q Consensus 97 ~~w~~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ 150 (228)
..|..+...++..|++.++..........++.-.+.+.+.-.++ ..++..+++.
T Consensus 111 ~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 111 ASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 44444556777889998887766655555555555555422111 3455554443
No 247
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=23.27 E-value=1.1e+02 Score=21.89 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=34.9
Q ss_pred hhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC--------CcCeEEecChhHHHHHhhc
Q psy16355 17 KRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG--------PYPKVYFQTPDCTQAILSS 70 (228)
Q Consensus 17 ~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~vvv~~p~~~k~il~~ 70 (228)
..+++++..-.. ...+.+...+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 98 ~l~v~nl~~~~t---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 98 ALTVKNLSPVVS---NELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEEEESCCTTCC---HHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred cccccCCCCCCC---HHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 456777765444 34567777899999877652 2247778888888887743
No 248
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=22.40 E-value=1.1e+02 Score=18.45 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCeeEEeeC----------CcCeEEecChhHHHHHhh
Q psy16355 31 FFKFVSEQCNNYKGNFILWLG----------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 31 ~~~~~~~~~~~yG~i~~~~~~----------~~~~vvv~~p~~~k~il~ 69 (228)
....+.+...+||+|..+++. |.-+|-..+++.+..+..
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~ 74 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVV 74 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHH
Confidence 456677888999998877652 123566678877777664
No 249
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=22.38 E-value=25 Score=20.52 Aligned_cols=51 Identities=16% Similarity=-0.020 Sum_probs=32.5
Q ss_pred hhhhcccccccCcHHHHHHHHHHHHHcCCeeEEeeC---------CcCeEEecChhHHHHHhh
Q psy16355 16 TKRKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLG---------PYPKVYFQTPDCTQAILS 69 (228)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~vvv~~p~~~k~il~ 69 (228)
...++++++.-.. .+.+.++..+||+|....+. +.-+|-..+++.++.++.
T Consensus 16 ~~l~V~nlp~~~t---~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 75 (95)
T 2ek1_A 16 TVIKVQNMPFTVS---IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 75 (95)
T ss_dssp EEEEEECCCTTCC---HHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCC---HHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHH
Confidence 4567888875444 34466777889976422211 224677788888888775
Done!