RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16355
(228 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 84.3 bits (209), Expect = 7e-19
Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 10/188 (5%)
Query: 46 FILWLGPYPKVYFQTPD------CTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKW 99
F L+LGP P V P+ + S + +LG G++ + G +W
Sbjct: 37 FRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFAT-SRGPFLGKGIVFANGPRW 95
Query: 100 HHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELD-NSGFDVFPIMKLTTLDIVCE 158
R+ LTP F + +++ LV++L + D+ ++ L+++C
Sbjct: 96 RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICS 155
Query: 159 TTMGYDLGALKN-QNSAYTQAVGIVAEISMKRFMLPWLHY-DAIFKRTEMGKTYYRELEV 216
G G+L++ + +AV ++ + + + G+ R +
Sbjct: 156 ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKK 215
Query: 217 MKKFTLSY 224
+K
Sbjct: 216 IKDLLDKL 223
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 58.8 bits (142), Expect = 4e-10
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 31 FFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYA------LLD 84
FF + E Y G F L GP + P + IL D S Y+ +L+
Sbjct: 153 FFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILR-----DNSKAYSKGILAEILE 207
Query: 85 VWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFD- 143
+G GLI + G+ W RR+ + PA H + M+ + DRL Q+LD + D
Sbjct: 208 FVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMISLFGQAS----DRLCQKLDAAASDG 263
Query: 144 ----VFPIMKLTTLDIVCETTMGYDLGALKNQN 172
+ + TLDI+ + YD +L N
Sbjct: 264 EDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDT 296
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 52.4 bits (126), Expect = 4e-08
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 81 ALLDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNS 140
L V L+T G + RKLL PAF L +++ D L+D L Q
Sbjct: 81 LLRPVLGDGSLLTLDGPEHTRLRKLLAPAFTPRALRGYRPLIREIADRLLDDLWQG---G 137
Query: 141 GFDVFPIMKLTTLDIVCETTMGYDLG 166
V TL ++ E +G L
Sbjct: 138 ADLVLDFAAELTLRVIAE-LLGVPLE 162
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 49.0 bits (117), Expect = 7e-07
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 42 YKGNFILWLGPYPKVYFQTPDCTQAILSSTEHID-KSTEYALLDVWL---------GTGL 91
Y FI W G P++ + + +L+ + KS WL G GL
Sbjct: 93 YGKRFIYWNGTEPRLCLTETELIKELLTKYNTVTGKS--------WLQQQGTKHFIGRGL 144
Query: 92 ITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG--FDVFPIMK 149
+ + G W+H+R + PAF + L+ M + T ++ L + +++ ++ M
Sbjct: 145 LMANGADWYHQRHIAAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYMT 204
Query: 150 LTTLDIVCETTMG--YDLG 166
T DI+ T Y+ G
Sbjct: 205 RLTADIISRTEFDSSYEKG 223
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 41.3 bits (97), Expect = 2e-04
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 21 GLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSS--TEHIDKST 78
LL L + FK+++E Y+ L GP V P + +L + +++ K
Sbjct: 32 DLLGGALFLPLFKWMNEYGPVYR----LAAGPRNFVVVSDPAIAKHVLRNYGSKYA-KGL 86
Query: 79 EYALLDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPM-QDTTDILVDRLSQEL 137
+ + G+G + G+ W RR+ + P+ H L M++ + + LV++L
Sbjct: 87 VAEVSEFLFGSGFAIAEGELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVA 146
Query: 138 DN-SGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAV 179
+ ++ TLD++ + Y+ +L +S QAV
Sbjct: 147 LSGEAVNMEAKFSQLTLDVIGLSVFNYNFDSLTT-DSPVIQAV 188
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 32.1 bits (73), Expect = 0.20
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 83 LDVWLGTGLITSTGQKWHHRRKLLTPAFHY---NILETMLEPMQDTTDILVDRLS----- 134
++V LG G+ G+ W +RK T +F + N+ + ++ + L LS
Sbjct: 107 MEVLLGDGIFNVDGELWRKQRK--TASFEFASKNLRDFSTVVFREYSLKLSSILSQASFA 164
Query: 135 -QELDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQ--NSAYTQAVGIVAEISMKRFM 191
Q +D D+F M++ TLD +C+ G ++G L + + QA I RF+
Sbjct: 165 NQVVDMQ--DLF--MRM-TLDSICKVGFGVEIGTLSPSLPENPFAQAFDTANIIVTLRFI 219
Query: 192 LP 193
P
Sbjct: 220 DP 221
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 27.7 bits (61), Expect = 7.4
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 103 RKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDN 139
+K L+PA E + M D D++ L
Sbjct: 1355 KKELSPALRNRFTEIWVPVMSDEADLIFIVLVDLRFG 1391
>gnl|CDD|173287 PRK14826, PRK14826, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 222
Score = 26.9 bits (60), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 197 YDAIFKRTEMGKTYYRELEVMKKFTLSY 224
YD IF+ GKT + E+ +K T+S+
Sbjct: 178 YDPIFRVEATGKT-FAEMSTEEKNTISH 204
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,425,924
Number of extensions: 1047430
Number of successful extensions: 754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 15
Length of query: 228
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 134
Effective length of database: 6,768,326
Effective search space: 906955684
Effective search space used: 906955684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)