RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16355
(228 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 186 bits (474), Expect = 5e-57
Identities = 32/198 (16%), Positives = 75/198 (37%), Gaps = 10/198 (5%)
Query: 31 FFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALL-----DV 85
+ Y + + V +P+ + L ST++ S Y L +
Sbjct: 12 LQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGER 71
Query: 86 WLGTGLITST-GQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG-FD 143
G GL++ ++WH +R+++ AF + L +++E + + LV+ L + D
Sbjct: 72 LFGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVS 131
Query: 144 VFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKR 203
+ ++ T +DI+ + G + L +QAV ++ E + +
Sbjct: 132 MQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQAVKLMLEGITASRNTLA---KFLPGK 188
Query: 204 TEMGKTYYRELEVMKKFT 221
+ + + +++
Sbjct: 189 RKQLREVRESIRFLRQVG 206
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 161 bits (410), Expect = 3e-47
Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 13/200 (6%)
Query: 26 KLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE---YAL 82
L + + Y +W+ + I+ + +
Sbjct: 65 FLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHNHYSSRFGSKLGLQC 124
Query: 83 LDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG- 141
+ + + + + W R A L M+ ++ +DRL + + SG
Sbjct: 125 IGMHEKGIIFNNNPELWKTTRPFFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGY 184
Query: 142 FDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIF 201
DV +++ LD + L SA + + + P + F
Sbjct: 185 VDVLTLLRRVMLDTSNTLFLRIPLDE-----SAIVVKIQGYFDAWQALLIKPDI----FF 235
Query: 202 KRTEMGKTYYRELEVMKKFT 221
K + + K Y + ++ +K
Sbjct: 236 KISWLYKKYEKSVKDLKDAI 255
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 154 bits (391), Expect = 1e-44
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 7/196 (3%)
Query: 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAIL-SSTEHIDKSTEYALLDVWLG 88
+ + + + + F Y + + S + S + + G
Sbjct: 24 KPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAG 83
Query: 89 TGLITST--GQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP 146
GL TS + W +L P+F ++ M D LV + + + +V
Sbjct: 84 DGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPE 143
Query: 147 IMKLTTLDIVCETTMGYDLGALKN-QNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTE 205
M TLD + Y + Q + ++ + +M + E
Sbjct: 144 DMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRAN---PDDPAYDE 200
Query: 206 MGKTYYRELEVMKKFT 221
+ + +++VM
Sbjct: 201 NKRQFQEDIKVMNDLV 216
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 145 bits (368), Expect = 2e-41
Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 8/177 (4%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGT-GLITSTGQKWHHRRK 104
+ LGP P+ T A+ + ++ + L+ LG G+ T+ G +R+
Sbjct: 58 VRIKLGPKTVYAVTNPELTGALALNPDYHIAGPLWESLEGLLGKEGVATANGPLHRRQRR 117
Query: 105 LLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYD 164
+ PAF + + M++ L +R D + + +
Sbjct: 118 TIQPAFRLDAIPAYGPIMEEEAHALTERWQ---PGKTVDATSESFRVAVRVAARCLLRGQ 174
Query: 165 LGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKKFT 221
+ A+ V +R ++P + + L +
Sbjct: 175 YMD--ERAERLCVALATVFRGMYRRMVVPLGPLY--RLPLPANRRFNDALADLHLLV 227
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 130 bits (328), Expect = 1e-35
Identities = 21/194 (10%), Positives = 50/194 (25%), Gaps = 10/194 (5%)
Query: 32 FKFVSEQCNNYKGN-FILWLGPYPKVYFQTPDCTQAIL-SSTEHIDKSTEYALLDVWLGT 89
F+ E K F + + P E + Y+ + G
Sbjct: 26 LGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVPVFGE 85
Query: 90 GLITST-GQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM 148
G+ + + + L + + +Q + + + D ++
Sbjct: 86 GVAYAAPYPRMREQLNFLAEELTIAKFQNFVPAIQHEVRKFMAA-NWDKDEGEINLLEDC 144
Query: 149 KLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKR-FMLPWLHYDAIFKRTEMG 207
++ C+ G DL + + Q + + + LP L
Sbjct: 145 STMIINTACQCLFGEDLRK-RLDARRFAQLLAKMESSLIPAAVFLPILLKL----PLPQS 199
Query: 208 KTYYRELEVMKKFT 221
+ ++K
Sbjct: 200 ARCHEARTELQKIL 213
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 126 bits (319), Expect = 9e-35
Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 11/172 (6%)
Query: 32 FKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGTGL 91
+ + L L +P P+ + L + + +Y L G GL
Sbjct: 21 LAVLLAWGRAH-PRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGL 79
Query: 92 ITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLT 151
+T G+ W RK L F + E M++ D+ M
Sbjct: 80 LTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGE----WRGEERDLDHEMLAL 135
Query: 152 TLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKR 203
+L ++ G L + + + M + P D +
Sbjct: 136 SLRLLGRALFGKPLSP------SLAEHALKALDRIMAQTRSPLALLDLAAEA 181
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 111 bits (280), Expect = 7e-29
Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 8/168 (4%)
Query: 32 FKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEH-IDKSTEYA-LLDVWLGT 89
+F+ Y F + Y D + +S ++ Y+ L G
Sbjct: 34 IEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGK 93
Query: 90 GLITST-GQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM 148
G+ + ++K+L + + + ++ T + ++ +VF +
Sbjct: 94 GVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWG---ESGEKNVFEAL 150
Query: 149 KLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLP-WL 195
+ G ++ + N+ A A + S ++LP WL
Sbjct: 151 SELIILTASHCLHGKEIRSQLNEKVAQLYAD-LDGGFSHAAWLLPGWL 197
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 107 bits (270), Expect = 2e-27
Identities = 14/152 (9%), Positives = 41/152 (26%), Gaps = 8/152 (5%)
Query: 46 FILWLGPYPKVYFQTPDCTQAIL-SSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRK 104
L V + + + +D++ Y + G G++ +
Sbjct: 41 GTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIFGEGVVFD-ASPERRKEM 99
Query: 105 LLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYD 164
L A ++ ++D ++ + D+ T+ +G
Sbjct: 100 LHNAALRGEQMKGHAATIEDQVRRMIADWG---EAGEIDLLDFFAELTIYTSSACLIGKK 156
Query: 165 LGALKNQNSAYTQAVG-IVAEISMKRFMLPWL 195
+ + + + ++ P+L
Sbjct: 157 FRD--QLDGRFAKLYHELERGTDPLAYVDPYL 186
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 104 bits (261), Expect = 4e-26
Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHIDK-----STEYALLDVWLGTGLITSTGQKWH 100
F + LG + V+ +P +A+ + + + GL+ GQ+W
Sbjct: 65 FRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQ 124
Query: 101 HRRKLLTPAFHYN-ILETMLEPMQDTTDILVDRLSQELDNSG--FDVFPIMKLTTLDIVC 157
R + + + + + ++R+ + D G D++ + + + +C
Sbjct: 125 RVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESIC 184
Query: 158 ETTMGYDLGALKNQNS----AYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRE 213
G L+ + + A+ + K + P + T++ + +
Sbjct: 185 LVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHK--RLNTKVWQAHTLA 242
Query: 214 LEVMKKFTLSY 224
+ + K
Sbjct: 243 WDTIFKSVKPC 253
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 101 bits (255), Expect = 2e-25
Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 10/174 (5%)
Query: 28 SVEFFK---FVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLD 84
++ F F ++ + F L ++ + + + + ++T
Sbjct: 26 TLNFLNDGDFGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTR 85
Query: 85 VWLG-TGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFD 143
+ LG L T G+ RRK+L AF L++ L M +++ +
Sbjct: 86 ILLGPNALATQMGEIHRSRRKILYQAFLPRTLDSYLPKMDGIVQGYLEQWG---KANEVI 142
Query: 144 VFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHY 197
+P ++ T D+ MG + + + + LP +
Sbjct: 143 WYPQLRRMTFDVAATLFMGEKVSQNPQLFPWFET---YIQGLFSLPIPLPNTLF 193
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 88.5 bits (220), Expect = 1e-20
Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 25/198 (12%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLG--------TGLITSTGQ 97
+ LG VY P+ + +E + E L+ W+ G++
Sbjct: 49 YREKLGNVESVYVIDPEDVALLFK-SE--GPNPERFLIPPWVAYHQYYQRPIGVLLKKSA 105
Query: 98 KWHHRRKLLTP-AFHYNILETMLEPMQDTTDILVDRLSQELDNSG-----FDVFPIMKLT 151
W R L + L + + V L + + +G D+ +
Sbjct: 106 AWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRF 165
Query: 152 TLDIVCETTMGYDLGALKNQNSAYTQ----AVGIVAEISMKR-FMLPWLHYDAIFKRTEM 206
+ + G G L+ + Q A+ + S+ + P L RT+
Sbjct: 166 AFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLF---RLFRTKT 222
Query: 207 GKTYYRELEVMKKFTLSY 224
K + +V+ Y
Sbjct: 223 WKDHVAAWDVIFSKADIY 240
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 82.4 bits (204), Expect = 1e-18
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 6/134 (4%)
Query: 32 FKFVSEQCNNYKGN-FILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE-YALLDVWLGT 89
+ F+ + Y + F L + + + + ++ + G
Sbjct: 22 YLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGV 81
Query: 90 G-LITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM 148
+ G HR+ L + + E M + V R + +F
Sbjct: 82 NAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEK---ADEVVLFEEA 138
Query: 149 KLTTLDIVCETTMG 162
K + C
Sbjct: 139 KEILCRVACYWAGV 152
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 77.4 bits (191), Expect = 8e-17
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 6/134 (4%)
Query: 32 FKFVSEQCNNYKGN-FILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYA-LLDVWLGT 89
++F+S QC N F + + +T + + LG
Sbjct: 21 YRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQ 80
Query: 90 G-LITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM 148
G + G+ HR+++ + + + + V ++ + +
Sbjct: 81 GGVQGLDGETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAVPGWTR---KGEIVFYDEL 137
Query: 149 KLTTLDIVCETTMG 162
VC
Sbjct: 138 HEPLTRAVCAWAGV 151
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 69.6 bits (170), Expect = 4e-14
Identities = 20/135 (14%), Positives = 34/135 (25%), Gaps = 6/135 (4%)
Query: 86 WLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG-FDV 144
+ H + K L + + Q T L D L +EL G D
Sbjct: 123 GYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADF 182
Query: 145 FPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRT 204
T + + G + K + A + + + P L
Sbjct: 183 GGSSDGTAFNFLARAFYGTNPADTKLKADAPG-----LITKWVLFNLHPLLSIGLPRVIE 237
Query: 205 EMGKTYYRELEVMKK 219
E + + K
Sbjct: 238 EPLIHTFSLPPALVK 252
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 68.7 bits (168), Expect = 1e-13
Identities = 19/174 (10%), Positives = 48/174 (27%), Gaps = 10/174 (5%)
Query: 37 EQCNNYKGN-FILWLGPYPKVYFQTPDCTQAILSSTE-HIDKSTEY-ALLDVWLGTGLIT 93
+ G+ F + +G P A++ +D L++ L
Sbjct: 45 TRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERIFDVQLPH 104
Query: 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQD-TTDILVDRLSQELDNSG-FDVFPIMKLT 151
+ + + + L+ + E M +L+ ++ +
Sbjct: 105 YS---PSDEKARMKLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSF 161
Query: 152 TLDIVCETTMGYDLGALKNQNSA--YTQAVGIVAEISMKRFMLPWLHYDAIFKR 203
L T G + +++ A + + +LP L ++
Sbjct: 162 LLRAGYLTLYGIEALPRTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVG 215
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 66.2 bits (162), Expect = 6e-13
Identities = 19/156 (12%), Positives = 40/156 (25%), Gaps = 9/156 (5%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHID-KSTEYALLDVWLG-TGLITSTGQKWHHRR 103
F L + P +L ++ D K +A G + G +
Sbjct: 50 FTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENIN 109
Query: 104 KLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG----FDVFPIMKLTTLDIVCET 159
+ L ++ E M + ++ + ++ + T
Sbjct: 110 DTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLT 169
Query: 160 TMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWL 195
G DL Q + + + + P L
Sbjct: 170 IFGRDLTRRDTQKAHILNNLDNFKQFD---KVFPAL 202
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 51.5 bits (124), Expect = 6e-08
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 6/169 (3%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL 105
F + +C A+LS +D+++ +L + ++ S + +R
Sbjct: 55 FTVRAAGLYITVLLDSNCYDAVLSDVASLDQTSYAQVLMKRIFNMILPSHNPESEKKRAE 114
Query: 106 LTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLDIVCETTMGYDL 165
+ F L + MQ+ +L+ L S + + L ++ +T
Sbjct: 115 MH--FQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCY-SLLFKTGYLTVF 171
Query: 166 GALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYREL 214
GA N ++A TQ +LP L + K + + RE
Sbjct: 172 GAENNNSAALTQIYEEFRRFD---KLLPKLARTTVNKEEKQIASAAREK 217
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 47.2 bits (113), Expect = 1e-06
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 87 LGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG-FDVF 145
+ + + + ++W R LL+P F L+ M+ + D+LV L +E + +
Sbjct: 92 MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLK 151
Query: 146 PIMKLTTLDIVCETTMGYDLGALKNQNS 173
+ ++D++ T+ G ++ +L N
Sbjct: 152 DVFGAYSMDVITSTSFGVNIDSLNNPQD 179
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 38.7 bits (90), Expect = 9e-04
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 94 STGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG-FDVFPIMKLTT 152
+ H + K L N ++ + T L + L EL +G + +
Sbjct: 113 DPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAA 172
Query: 153 LDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMK--RFMLPWLHYDAIFKRTEM 206
+ + K SA T V LPW + + +
Sbjct: 173 FRFLGRAYFNSNPEETKLGTSAPTLISSWVLFNLAPTLDLGLPWFLQEPLLHTFRL 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.050
Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 60/182 (32%)
Query: 28 SVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQ-AILSSTEHIDKSTEYALLDVW 86
+ + FK ++E +Y + + T TQ A+ E A +
Sbjct: 1703 TEKIFKEINEHSTSY-----TFRSE-KGLLSAT-QFTQPALTL--------MEKAAFEDL 1747
Query: 87 LGTGLITSTGQKWHHRRKLLTPAF--H----YNIL----ETMLEPMQDTTDILVDR--LS 134
GLI + F H Y L + M ++ +++ R
Sbjct: 1748 KSKGLIPADA------------TFAGHSLGEYAALASLADVM--SIESLVEVVFYRGMTM 1793
Query: 135 Q------ELDNSGFD--------VFPIMKLTTLDIVCETTMGYDLGALK---NQNSAYTQ 177
Q EL S + V L V E +G G L N N Q
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-RVGKRTGWLVEIVNYNVENQQ 1852
Query: 178 AV 179
V
Sbjct: 1853 YV 1854
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 32.1 bits (74), Expect = 0.14
Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHI-----DKSTEYA------LLDVWLGTGLITS 94
F L++G V ++ + + D E++ G+I +
Sbjct: 47 FTLYVGSQRMV----------VMHGYKAVKEALLDYKDEFSGRGDLPAFHAHRDRGIIFN 96
Query: 95 TGQKWHHRRKLLTPAFHY-----NILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMK 149
G W R+ E +Q L++ L ++ FD ++
Sbjct: 97 NGPTWKDIRRFSLTTLRNYGMGKQGNE---SRIQREAHFLLEAL-RKTQGQPFDPTFLIG 152
Query: 150 LTTLDIVCETTMGY 163
+++ +
Sbjct: 153 CAPCNVIADILFRK 166
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding
motif, structural genomics, PSI-2, Pro structure
initiative; 2.19A {Streptomyces coelicolor} SCOP:
a.4.1.9 a.121.1.1
Length = 200
Score = 31.2 bits (71), Expect = 0.18
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
+SK G +F TK L +
Sbjct: 43 EMSKSGVHKHFGTKETLQI 61
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical
bundle, structural genomics, J center for structural
genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus
aurantiacus}
Length = 199
Score = 30.0 bits (68), Expect = 0.46
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
G+ KGG +F++K +L L
Sbjct: 38 GLEKGGIYRHFESKEQLAL 56
>3eup_A Transcriptional regulator, TETR family; structural genomics,
MCSG, protein structure initiative, midwest center for
STRU genomics; 1.99A {Cytophaga hutchinsonii}
Length = 204
Score = 30.0 bits (68), Expect = 0.49
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
++KG NF+ K + +
Sbjct: 42 NLTKGSIYGNFENKEAVAI 60
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription
factor, structur genomics, oxford protein production
facility; 2.10A {Neisseria meningitidis serogroup B}
Length = 145
Score = 28.9 bits (65), Expect = 0.71
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILE 116
TQ + + K T + G GLI + R++L LT
Sbjct: 42 TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGK-AYAA 100
Query: 117 TMLEPMQDTTDILVDRLSQE 136
+ E Q+ +D + +
Sbjct: 101 PLTESAQEFSDKVFATFGDK 120
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 29.5 bits (67), Expect = 0.78
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 100 HHR-RKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDV 144
H + R+L+ PAF ++ M ++ LVDRL++ D+
Sbjct: 95 HRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDL 140
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 29.5 bits (67), Expect = 0.97
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R ++ P F T L+P +Q T D L++++
Sbjct: 95 HMHQRSMVEPTF------TPEAVKNLQPYIQRTVDDLLEQM 129
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 29.1 bits (66), Expect = 1.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H RKLL F T+ L P +Q D +D +
Sbjct: 95 HTSDRKLLAKEF------TVRRMQALRPNIQRIVDEHLDAI 129
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 29.1 bits (66), Expect = 1.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R RK+LTP F T+ +EP +Q D +D L
Sbjct: 105 HTRLRKMLTPEF------TVRRIRRMEPAIQSLIDDRLDLL 139
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 29.1 bits (66), Expect = 1.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R R++L PAF T+ + P +Q D ++D +
Sbjct: 107 HTRYRRMLLPAF------TVRRVRAMRPAVQARVDEILDGM 141
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET:
MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A
2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Length = 185
Score = 28.6 bits (64), Expect = 1.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 4 GISKGGFIHNFQTKRKL 20
G+SK G I++F ++ L
Sbjct: 35 GLSKSGLIYHFPSRHAL 51
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 100 HHR-RKLLTPAFHYNILETMLEPMQDTTDILVDRL 133
H R R+ LTP F ++ M ++ + +D +
Sbjct: 96 HTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEM 130
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 29.1 bits (66), Expect = 1.2
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R+ + F T+ L P +QD D +D +
Sbjct: 103 HSAARRPVIGEF------TVKRLAALRPRIQDIVDHFIDDM 137
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 29.1 bits (66), Expect = 1.2
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 100 HHR-RKLLTPAFHYNILETMLEPMQDTTDILVDRL 133
H R R++L P+F + + +Q D L+D +
Sbjct: 102 HARQRRMLIPSFGVKRMNAIRPRLQSLVDRLLDDM 136
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 29.1 bits (66), Expect = 1.4
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 35/137 (25%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHI-----DKSTEYA-------LLDVWLGTGLIT 93
F + LGP V +L + + D++ E++ V+ G G++
Sbjct: 47 FTIHLGPRRVV----------VLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVF 96
Query: 94 STGQKWHHRRKLLTPAFHYNIL-------ETMLEPMQDTTDILVDRLSQELDNSGFDVFP 146
S G++ R+ F L + E +Q+ L+D L + + D
Sbjct: 97 SNGERAKQLRR-----FSIATLRDFGVGKRGIEERIQEEAGFLIDAL-RGTGGANIDPTF 150
Query: 147 IMKLTTLDIVCETTMGY 163
+ T +++ G
Sbjct: 151 FLSRTVSNVISSIVFGD 167
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R R+ + PA+ + L P +++ + +D
Sbjct: 87 HTRLRRTVAPAY------SARRMERLRPRIEEIVEECLDDF 121
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R R L+ A T+ + + + TD L+D L
Sbjct: 100 HRRLRTLVAQAL------TVRRVEHMRGRITELTDRLLDEL 134
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 28.7 bits (65), Expect = 1.5
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R++ F T+ + P +++ +D +
Sbjct: 103 HGTRRRMTISEF------TVKRIKGMRPEVEEVVHGFLDEM 137
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 28.8 bits (65), Expect = 1.6
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H+R R+ + AF T+ L P Q+ D LVD +
Sbjct: 104 HNRLRRAVAGAF------TVGATKRLRPRAQEILDGLVDGI 138
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas
aeruginosa}
Length = 197
Score = 28.4 bits (64), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
G+ KG F H F++K + G
Sbjct: 41 GVPKGSFYHYFKSKEQFGQ 59
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R R+L+ AF T L P ++ LVD++
Sbjct: 111 HSRLRRLVVKAF------TARRAESLRPRAREIAHELVDQM 145
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 28.8 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R RKL+ F TM L P +Q+ D LVD +
Sbjct: 120 HTRLRKLVAREF------TMRRVELLRPRVQEIVDGLVDAM 154
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like
protein, MCSG, PSI, structural genomics, protein S
initiative; 2.45A {Acinetobacter SP}
Length = 212
Score = 28.1 bits (63), Expect = 1.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
G+ KG F H F++K G
Sbjct: 45 GVPKGSFYHYFESKEAFGC 63
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 100 HHR-RKLLTPAFHYNILET----MLEP-MQDTTDILVDRL 133
RK + A T LE ++DT + L+D L
Sbjct: 91 DAGLRKAVMKAI------TPKAPGLEQFLRDTANSLLDNL 124
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R R+ + AF T + + D LVD +
Sbjct: 101 HTRLRRSVAAAF------TARGVERVRERSRGMLDELVDAM 135
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein
structure initiat midwest center for structural
genomics, MCSG; HET: MSE; 1.40A {Agrobacterium
tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Length = 194
Score = 28.0 bits (63), Expect = 2.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
GI H+F +K L
Sbjct: 39 GIRNASIHHHFPSKSDLVC 57
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 28.3 bits (64), Expect = 2.1
Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 35/137 (25%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHI-----DKSTEYA-------LLDVWLGTGLIT 93
F ++LG P V +L T+ I D++ ++ + ++ G G+I
Sbjct: 47 FTVYLGSRPVV----------VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIF 96
Query: 94 STGQKWHHRRKLLTPAFHYNIL-------ETMLEPMQDTTDILVDRLSQELDNSGFDVFP 146
+ G++W R+ F + ++ E +Q+ LV+ L ++ + D
Sbjct: 97 ANGERWRALRR-----FSLATMRDFGMGKRSVEERIQEEARCLVEEL-RKSKGALLDNTL 150
Query: 147 IMKLTTLDIVCETTMGY 163
+ T +I+C G
Sbjct: 151 LFHSITSNIICSIVFGK 167
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.4 bits (64), Expect = 2.2
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R+LLTP F + ++P +++ D L+D
Sbjct: 105 HAETRRLLTPLF------SARRVLEMQPKVEEAADTLLDAF 139
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 28.3 bits (64), Expect = 2.2
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 31/135 (22%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHI-----DKSTEYA-------LLDVWLGTGLIT 93
F L+ G P V +L E + D E++ G G++
Sbjct: 48 FTLYFGLKPIV----------VLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVF 97
Query: 94 STGQKWHHRRKLLTPAFHY-----NILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM 148
S G+KW R+ +E + +Q+ LV+ L ++ S D I+
Sbjct: 98 SNGKKWKEIRRFSLMTLRNFGMGKRSIE---DRVQEEARCLVEEL-RKTKASPCDPTFIL 153
Query: 149 KLTTLDIVCETTMGY 163
+++C
Sbjct: 154 GCAPCNVICSIIFHK 168
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 28.3 bits (64), Expect = 2.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R RKL++ F T+ + P ++ T L+D +
Sbjct: 98 HTRLRKLVSQEF------TVRRVEAMRPRVEQITAELLDEV 132
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 28.0 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 100 HHR-RKLLTPAFHYNILETM-----LEP-MQDTTDILVDRL 133
H R RKL+ +F T+ LEP + + D L+ L
Sbjct: 95 HTRLRKLVGRSF------TVRRMNELEPRITEIADGLLAGL 129
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle,
antibiotic; 2.40A {Streptomyces coelicolor} SCOP:
a.4.1.9 a.121.1.1 PDB: 1ui6_A
Length = 215
Score = 27.7 bits (62), Expect = 2.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
G++KG +F K L
Sbjct: 40 GVTKGALYFHFAAKEDLAH 58
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928,
PSI-2, protein structur initiative; 2.30A {Rhodobacter
sphaeroides 2}
Length = 222
Score = 27.7 bits (62), Expect = 2.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
+ KG F H F+ K GL
Sbjct: 61 RVPKGSFYHYFRNKADFGL 79
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MES; 1.90A {Silicibacter
pomeroyi}
Length = 194
Score = 26.9 bits (60), Expect = 4.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
GIS+G F ++F+TK ++
Sbjct: 39 GISRGNFYYHFKTKDEILA 57
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP:
a.4.1.9 a.121.1.1
Length = 180
Score = 26.9 bits (60), Expect = 4.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
G++ GGF +FQ+K L L
Sbjct: 38 GLTVGGFYAHFQSKDALML 56
>3som_A Methylmalonic aciduria and homocystinuria type C; structural
genomics, structural genomics consortium, SGC, CB
organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo
sapiens}
Length = 286
Score = 27.1 bits (59), Expect = 5.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 119 LEPMQDTTDILVDRLSQELDNSGFDVFP 146
+ M+ L ++ L GF+V+P
Sbjct: 2 FQSMEPKVAELKQKIEDTLCPFGFEVYP 29
>2xdn_A HTH-type transcriptional regulator TTGR; transcription
regulation, TETR family; 2.20A {Pseudomonas putida}
PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Length = 210
Score = 26.2 bits (58), Expect = 7.5
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 4 GISKGGFIHNFQTKRKL 20
G+++G +F K +L
Sbjct: 42 GVTRGAIYWHFNNKAEL 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 7.9
Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 69/244 (28%)
Query: 35 VSEQCNNYKGNFILWLGPYPKVY--FQTPDCTQAILSSTE--HI-----DKSTEYALLDV 85
E YK ++ + + D ++ILS E HI S L
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 86 -----------WLGTGLITSTG---QKWHHRRKLLTPAFHYNILETMLEPMQDTTDIL-- 129
++ L + ++ P+ + + + + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 130 --VDRLS---------QELDNSGFDVFPIM----KLTTLDI-VCET-------------- 159
V RL EL + + + K T + + VC +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWL 187
Query: 160 TMGY---DLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGKTYYRELEV 216
+ L+ Q + H I R + R L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQI--------DPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 217 MKKF 220
K +
Sbjct: 240 SKPY 243
>3on4_A Transcriptional regulator, TETR family; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: MSE; 1.85A {Legionella
pneumophila subsp}
Length = 191
Score = 26.1 bits (58), Expect = 8.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 4 GISKGGFIHNFQTKRKLGL 22
I ++F +K LG+
Sbjct: 41 NIKTASIHYHFPSKEDLGV 59
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage
repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A
{Leishmania naiffi}
Length = 268
Score = 26.1 bits (58), Expect = 9.5
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 163 YDLGALKNQNSAYTQAVGIVAEISMKRFMLP--WLHYDAIFKRTEMGKTYYRELE 215
+ +G L+ Q + + + + + W + A K + +E
Sbjct: 7 HHMGTLEAQTQGPGSMMSVSSSRWLAGLITNPEWRDFLAPITADSWRKGAFIRIE 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,467,075
Number of extensions: 198607
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 64
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)