RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16355
(228 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 67.8 bits (164), Expect = 7e-14
Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 2/192 (1%)
Query: 31 FFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDV-WLGT 89
F F E Y + + G P + PD + +L + + V ++ +
Sbjct: 30 FCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKS 89
Query: 90 GLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSG-FDVFPIM 148
+ + ++W R LL+P F L+ M+ + D+LV L +E + + +
Sbjct: 90 AISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVF 149
Query: 149 KLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGK 208
++D++ T+ G ++ +L N + + + +
Sbjct: 150 GAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVL 209
Query: 209 TYYRELEVMKKF 220
+ F
Sbjct: 210 NICVFPREVTNF 221
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 67.4 bits (163), Expect = 8e-14
Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 4/195 (2%)
Query: 31 FFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHI--DKSTEYALLDVWLG 88
+ Y F ++LG P V D + L + + ++ G
Sbjct: 24 LLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQG 83
Query: 89 TGLITSTGQKWHHRRKLLTPAFH-YNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPI 147
G+I + G++W R+ + + + +E + ++ + D +
Sbjct: 84 YGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLL 143
Query: 148 MKLTTLDIVCETTMGYDLGALKNQNSAYTQAV-GIVAEISMKRFMLPWLHYDAIFKRTEM 206
T +I+C G + IS + L +
Sbjct: 144 FHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGT 203
Query: 207 GKTYYRELEVMKKFT 221
+ YR L+ + F
Sbjct: 204 HRQIYRNLQEINTFI 218
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 60.5 bits (145), Expect = 2e-11
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 3/177 (1%)
Query: 30 EFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHI--DKSTEYALLDVWL 87
+ K ++ Y F L+ G P V + + L +
Sbjct: 24 DISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANR 83
Query: 88 GTGLITSTGQKWHHRRKLLTPAF-HYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFP 146
G G++ S G+KW R+ ++ + + +E + ++ S D
Sbjct: 84 GFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTF 143
Query: 147 IMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKR 203
I+ +++C Q + + +I ++ ++ I
Sbjct: 144 ILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDY 200
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 59.3 bits (142), Expect = 5e-11
Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 9/200 (4%)
Query: 32 FKFVSEQCNNYKGN-FILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTE-YALLDVWLGT 89
+ F+ + Y + F L + + + + ++ + G
Sbjct: 17 YLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGV 76
Query: 90 G-LITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIM 148
+ G HR+ L + + E M + V R +F
Sbjct: 77 NAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWE---KADEVVLFEEA 133
Query: 149 KLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKRTEMGK 208
K + C + + + W A + E +
Sbjct: 134 KEILCRVACYWAGVPLKET---EVKERADDFIDMVDAFGAVGPRHWKGRRARPRAEEWIE 190
Query: 209 TYYRELEVMKKFTLSYSELY 228
+ T S + L+
Sbjct: 191 VMIEDARAGLLKTTSGTALH 210
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 59.0 bits (141), Expect = 6e-11
Identities = 19/84 (22%), Positives = 30/84 (35%)
Query: 44 GNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRR 103
L L +P P+ + L + + +Y L G GL+T G+ W R
Sbjct: 32 PRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEAR 91
Query: 104 KLLTPAFHYNILETMLEPMQDTTD 127
K L F + E M++
Sbjct: 92 KALKDPFLPKNVRGYREAMEEEAR 115
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 58.2 bits (139), Expect = 1e-10
Identities = 28/205 (13%), Positives = 60/205 (29%), Gaps = 5/205 (2%)
Query: 20 LGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTE-HIDKST 78
L L + + + + + + + F Y + + + + S
Sbjct: 12 LKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQ 71
Query: 79 EYALLDVWLGTGLITST--GQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQE 136
+ + G GL TS + W +L P+F ++ M D LV + +
Sbjct: 72 ALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERL 131
Query: 137 LDNSGFDVFPIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLH 196
+ +V M TLD + Y + + A +
Sbjct: 132 NADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANP 191
Query: 197 YDAIFKRTEMGKTYYRELEVMKKFT 221
D + + + +++VM
Sbjct: 192 DDPAYDENKR--QFQEDIKVMNDLV 214
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 44.8 bits (104), Expect = 3e-06
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 69 SSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDI 128
++ +S A ++ + T + RK+LTP F + M +Q D
Sbjct: 72 TTRPQFTQSKSGAHVEAQFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDD 131
Query: 129 LVDR 132
+D
Sbjct: 132 RLDL 135
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator
TM0816 {Thermotoga maritima [TaxId: 2336]}
Length = 140
Score = 33.9 bits (77), Expect = 0.006
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILE 116
++ KS ++D GL+ R LT I
Sbjct: 43 LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGK-EIFG 101
Query: 117 TMLEPMQDTTDILVDRLSQE 136
+L + ++++ S+E
Sbjct: 102 EILSNFESLLKSVLEKFSEE 121
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 141
Score = 31.2 bits (70), Expect = 0.052
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 3/80 (3%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILE 116
+ L DK+ + G L+ R LT I +
Sbjct: 47 EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGL-AIHQ 105
Query: 117 TMLEPMQDTTDILVDRLSQE 136
M D L L+
Sbjct: 106 HAEAIMSRVHDELFAPLTPV 125
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 31.7 bits (70), Expect = 0.074
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 46 FILWLGPYPKVYFQTPDCTQAILSSTEHI-----------DKSTEYALLDVWLGTGLITS 94
+ + P + +L+S++ + + L + T+
Sbjct: 25 TWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVENMFTA 84
Query: 95 TGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVFPIMKLTTLD 154
G R+L+ PAF ++ M ++ LVDRL++ D+ +
Sbjct: 85 YGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPI 144
Query: 155 IVCETTMGY 163
V MG
Sbjct: 145 AVIGHLMGV 153
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159
{Deinococcus radiodurans [TaxId: 1299]}
Length = 172
Score = 30.4 bits (68), Expect = 0.12
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 63 CTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILETMLE 120
LS+ I + + L GLI + R LTP ++ +L
Sbjct: 80 LRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGR-ALVTHLLP 138
Query: 121 PMQDTTDILVDRLSQE 136
TT ++ LS +
Sbjct: 139 AHLATTQRVLAPLSAQ 154
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor,
MarR {Escherichia coli [TaxId: 562]}
Length = 138
Score = 30.0 bits (67), Expect = 0.12
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 2/80 (2%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILE 116
T L +D +LD + G + R L LT +
Sbjct: 45 CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104
Query: 117 TMLEPMQDTTDILVDRLSQE 136
QD L L+ +
Sbjct: 105 CHQLVGQDLHQELTKNLTAD 124
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 30.5 bits (67), Expect = 0.15
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 79 EYALLDVWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILV 130
+ L L+ + R+ LTP F ++ M ++ + +
Sbjct: 72 KGIFRPRELVGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRL 123
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 30.5 bits (67), Expect = 0.15
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 85 VWLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDIL 129
G ++T G + R L+ A +E M + + TD L
Sbjct: 79 ANPGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRL 123
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator
PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 29.6 bits (66), Expect = 0.15
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILE 116
Q + L++ I + + +L G++ RR LT
Sbjct: 41 QQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQ-QCFV 99
Query: 117 TMLEPMQDTTDILVDRLSQE 136
+M M+ + +R +E
Sbjct: 100 SMSGDMEKNYQRIQERFGEE 119
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 30.2 bits (66), Expect = 0.20
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 3/118 (2%)
Query: 86 WLGTGLITSTGQKWHHRRKLLTPAFHYNILETMLEPMQDTTDILVDRLSQELDNSGFDVF 145
+ L + R L F + + E ++ V RL D G F
Sbjct: 97 HVIDSLTSMDPPTHTAYRGLTLNWFQPASIRKLEENIRRIAQASVQRLL---DFDGECDF 153
Query: 146 PIMKLTTLDIVCETTMGYDLGALKNQNSAYTQAVGIVAEISMKRFMLPWLHYDAIFKR 203
+ T + TQ V E + P D +R
Sbjct: 154 MTDCALYYPLHVVMTALGVPEDDEPLMLKLTQDFFGVHEPDEQAVAAPRQSADEAARR 211
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 137
Score = 29.2 bits (65), Expect = 0.21
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 61 PDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNILETM 118
TQ L+ + ++ T LLD GL+ R K LTP ++ +
Sbjct: 42 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKAD-VLIADI 100
Query: 119 LEPMQDTTDILVDRLSQE 136
+ ++ + +
Sbjct: 101 EAIAASVRNDVLTGIDES 118
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A
homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 28.0 bits (62), Expect = 0.47
Identities = 4/70 (5%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 57 YFQTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPAFHYNI 114
++ + + ++ L L++ R + +T
Sbjct: 43 RSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQK-AN 101
Query: 115 LETMLEPMQD 124
++ ++ +++
Sbjct: 102 IQKLISELEE 111
>d1w8ia_ c.120.1.1 (A:) Hypothetical protein AF1683 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 155
Score = 26.9 bits (59), Expect = 1.3
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 187 MKRFMLPWLHYDAIFKRTEMGKTYYRELEVMKK 219
+ L + YD+ F +G+ Y++ L+ ++
Sbjct: 110 AEELKLKLISYDSRFSLPTIGRDYWKSLDESER 142
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 27.3 bits (60), Expect = 1.7
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLD----VWLGTGLITSTGQKWHHRRKLLTPAFHYNI 114
+P Q LSS+ D E+ L WL G + G LL+ H N
Sbjct: 2 HSPSFLQHALSSS---DTRAEWPLPGGLAARWLAPGCVELNGDARGADSVLLSCGVHGN- 57
Query: 115 LETMLEPMQDTTDILVDRLSQELDNS 140
ET P++ +VD + ++
Sbjct: 58 -ET--APIE-----VVDGMLTDIAAG 75
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854
{Oenococcus oeni [TaxId: 1247]}
Length = 135
Score = 25.9 bits (56), Expect = 2.5
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 1/120 (0%)
Query: 18 RKLGLLNIKLSVEFFKFVSEQCNNYKGNFILWLGPYPKVYFQTPDCTQAILSSTEHIDKS 77
R LG L S + Y + + Q L S I S
Sbjct: 1 RDLGRLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSS 60
Query: 78 TEYALLDVWLGTGLITSTGQKWHHRRKLLTPAFH-YNILETMLEPMQDTTDILVDRLSQE 136
T LL L+ R+K L + +L M + L++E
Sbjct: 61 TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKE 120
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 25.8 bits (56), Expect = 2.9
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKLLTPAFH-YNILET 117
+ P Q ++ +D++T + G I + + K + N+
Sbjct: 40 ENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99
Query: 118 MLEPMQDTTDILVDRLSQE 136
++ Q + + + LS+
Sbjct: 100 IVRENQHSNQVALQGLSEV 118
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 136
Score = 25.7 bits (56), Expect = 3.0
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 2/53 (3%)
Query: 59 QTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKL--LTPA 109
+ + +D T LL LI + R LT
Sbjct: 45 DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 97
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 25.1 bits (55), Expect = 8.2
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 52 PYPKVYFQTPDCTQAILSSTEHIDKSTEYALLDVWLGTGLITSTGQKWHHRRKLL-TPAF 110
P V I + + A L VWL T S + W + +L P
Sbjct: 45 PCKLVLKPLGTTPDEITAICRDANYDDPCAGLVVWLHTF---SPAKMWINGLTMLNKPLL 101
Query: 111 HYNI 114
++
Sbjct: 102 QFHT 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,951
Number of extensions: 37706
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 25
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)