Query psy16364
Match_columns 276
No_of_seqs 167 out of 1137
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:25:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1059|consensus 100.0 9.8E-38 2.1E-42 292.1 15.6 236 1-276 168-412 (877)
2 KOG1062|consensus 100.0 8E-38 1.7E-42 296.0 11.7 248 2-272 167-424 (866)
3 KOG1059|consensus 100.0 7.5E-35 1.6E-39 272.9 16.0 218 1-224 323-572 (877)
4 KOG1077|consensus 100.0 1.3E-31 2.9E-36 250.5 17.6 219 10-247 364-607 (938)
5 KOG1077|consensus 100.0 9.9E-32 2.1E-36 251.3 15.4 244 1-267 172-435 (938)
6 KOG1062|consensus 100.0 4.4E-30 9.4E-35 243.6 17.7 228 1-244 337-596 (866)
7 PF01602 Adaptin_N: Adaptin N 99.9 1.1E-21 2.3E-26 188.0 14.8 204 3-227 293-521 (526)
8 PF01602 Adaptin_N: Adaptin N 99.8 3.1E-18 6.6E-23 164.2 16.9 163 86-267 202-371 (526)
9 PTZ00429 beta-adaptin; Provisi 99.7 5.6E-15 1.2E-19 145.5 18.8 241 3-266 323-589 (746)
10 PTZ00429 beta-adaptin; Provisi 99.6 1.7E-13 3.7E-18 135.1 19.6 94 171-266 305-398 (746)
11 KOG1058|consensus 99.5 1.1E-12 2.4E-17 125.1 17.3 243 7-267 127-390 (948)
12 KOG1058|consensus 99.4 6.9E-12 1.5E-16 119.7 16.1 152 7-177 310-467 (948)
13 COG5240 SEC21 Vesicle coat com 99.1 2.5E-09 5.4E-14 100.1 13.1 213 3-235 329-561 (898)
14 KOG1078|consensus 98.8 9.9E-08 2.2E-12 92.2 13.7 211 2-232 307-535 (865)
15 KOG1061|consensus 98.5 1.3E-06 2.8E-11 84.6 13.4 240 4-266 306-569 (734)
16 KOG1060|consensus 97.7 0.0014 2.9E-08 64.4 15.5 249 5-275 349-623 (968)
17 KOG1078|consensus 97.4 0.01 2.2E-07 58.4 16.1 223 2-266 160-384 (865)
18 PF14764 SPG48: AP-5 complex s 97.3 0.049 1.1E-06 51.2 19.8 52 4-55 102-153 (459)
19 PF12717 Cnd1: non-SMC mitotic 97.2 0.0081 1.8E-07 49.7 11.6 65 4-69 15-82 (178)
20 PF10508 Proteasom_PSMB: Prote 96.8 0.52 1.1E-05 45.5 21.9 249 8-264 70-365 (503)
21 PRK09687 putative lyase; Provi 96.7 0.34 7.4E-06 43.1 18.9 25 17-41 26-50 (280)
22 PRK13800 putative oxidoreducta 96.7 0.19 4.1E-06 51.9 19.2 227 15-263 622-865 (897)
23 KOG2023|consensus 96.6 0.098 2.1E-06 51.0 15.4 194 10-238 86-294 (885)
24 PLN03200 cellulose synthase-in 96.5 0.55 1.2E-05 52.0 21.9 226 14-268 488-767 (2102)
25 PF12717 Cnd1: non-SMC mitotic 96.5 0.075 1.6E-06 43.8 12.2 75 172-246 34-112 (178)
26 KOG1060|consensus 96.4 0.24 5.2E-06 49.2 16.9 89 177-267 335-423 (968)
27 PLN03200 cellulose synthase-in 96.4 0.14 2.9E-06 56.5 16.5 207 15-232 610-863 (2102)
28 PRK09687 putative lyase; Provi 96.3 0.54 1.2E-05 41.8 17.5 61 15-75 55-116 (280)
29 KOG2171|consensus 96.3 0.28 6.2E-06 50.5 16.8 189 13-228 78-277 (1075)
30 KOG1824|consensus 96.1 0.31 6.7E-06 49.5 15.8 218 9-274 852-1077(1233)
31 cd00020 ARM Armadillo/beta-cat 95.9 0.12 2.6E-06 38.6 9.9 97 168-265 12-120 (120)
32 PF10508 Proteasom_PSMB: Prote 95.5 2.4 5.2E-05 40.9 19.3 99 167-265 341-465 (503)
33 PF12765 Cohesin_HEAT: HEAT re 95.5 0.0085 1.9E-07 37.3 1.7 37 2-38 4-42 (42)
34 PF12460 MMS19_C: RNAPII trans 95.4 2.4 5.2E-05 39.8 19.3 197 14-231 189-396 (415)
35 PRK13800 putative oxidoreducta 95.0 2.5 5.3E-05 43.9 18.6 74 177-260 821-894 (897)
36 PF04826 Arm_2: Armadillo-like 94.9 0.52 1.1E-05 41.3 11.6 87 14-102 54-145 (254)
37 KOG1020|consensus 94.6 0.99 2.2E-05 48.0 14.3 113 112-239 818-932 (1692)
38 PF05918 API5: Apoptosis inhib 94.4 3.5 7.5E-05 40.2 16.8 60 3-62 48-109 (556)
39 KOG1061|consensus 94.3 0.9 2E-05 45.1 12.7 87 178-266 294-380 (734)
40 PF02985 HEAT: HEAT repeat; I 94.2 0.071 1.5E-06 30.6 3.2 27 16-42 2-28 (31)
41 KOG1020|consensus 93.8 7.8 0.00017 41.7 18.7 37 176-212 1049-1087(1692)
42 KOG2259|consensus 93.7 5.5 0.00012 39.4 16.3 86 179-267 426-513 (823)
43 PF12755 Vac14_Fab1_bd: Vacuol 93.6 0.36 7.8E-06 35.8 6.8 52 178-229 1-56 (97)
44 COG5096 Vesicle coat complex, 93.6 5.1 0.00011 40.4 16.5 59 208-267 328-388 (757)
45 KOG0915|consensus 93.5 13 0.00028 40.2 21.3 224 14-266 998-1246(1702)
46 PF12348 CLASP_N: CLASP N term 93.4 4.3 9.3E-05 34.4 14.7 60 168-227 136-204 (228)
47 COG5096 Vesicle coat complex, 92.6 1.7 3.6E-05 43.7 11.6 205 14-232 320-564 (757)
48 KOG0212|consensus 92.1 5.5 0.00012 38.6 13.8 77 166-242 339-422 (675)
49 PF12755 Vac14_Fab1_bd: Vacuol 92.1 0.34 7.3E-06 35.9 4.8 35 9-43 22-56 (97)
50 KOG0212|consensus 91.9 13 0.00029 36.1 16.4 236 11-266 81-366 (675)
51 KOG2213|consensus 91.3 12 0.00027 34.7 16.4 59 3-61 50-108 (460)
52 KOG0213|consensus 91.2 14 0.00031 37.2 15.8 205 20-244 847-1083(1172)
53 PF12719 Cnd3: Nuclear condens 91.0 11 0.00024 33.6 19.8 66 14-80 27-94 (298)
54 KOG0166|consensus 90.7 7.8 0.00017 37.3 13.5 145 16-177 68-228 (514)
55 PF11707 Npa1: Ribosome 60S bi 90.4 13 0.00029 33.7 14.7 34 10-43 52-85 (330)
56 PF12765 Cohesin_HEAT: HEAT re 90.4 0.54 1.2E-05 29.1 3.7 39 186-224 2-42 (42)
57 COG5181 HSH155 U2 snRNP splice 90.1 21 0.00045 35.3 18.0 224 12-244 602-888 (975)
58 KOG1242|consensus 89.9 20 0.00044 34.9 16.7 70 197-266 369-445 (569)
59 PF13646 HEAT_2: HEAT repeats; 89.4 4.2 9E-05 28.5 8.4 57 200-260 31-87 (88)
60 PF08569 Mo25: Mo25-like; Int 89.2 18 0.00038 33.1 14.8 211 14-261 76-331 (335)
61 PF12830 Nipped-B_C: Sister ch 89.1 11 0.00023 31.3 11.8 126 9-139 3-141 (187)
62 PF08167 RIX1: rRNA processing 89.0 8.8 0.00019 31.1 11.0 68 10-77 21-95 (165)
63 PF04826 Arm_2: Armadillo-like 88.6 16 0.00035 32.0 13.6 106 160-266 51-164 (254)
64 PF07539 DRIM: Down-regulated 88.1 2.3 5.1E-05 33.7 6.8 58 199-260 16-73 (141)
65 KOG2171|consensus 87.4 41 0.00089 35.3 23.2 236 13-266 3-279 (1075)
66 cd03568 VHS_STAM VHS domain fa 87.4 5.6 0.00012 31.7 8.7 36 8-43 31-66 (144)
67 PF13646 HEAT_2: HEAT repeats; 86.6 1.6 3.4E-05 30.8 4.7 41 16-60 1-42 (88)
68 KOG2259|consensus 86.3 38 0.00082 33.8 17.6 90 166-256 373-466 (823)
69 cd00020 ARM Armadillo/beta-cat 86.3 3.4 7.3E-05 30.4 6.7 32 14-45 49-80 (120)
70 COG5240 SEC21 Vesicle coat com 86.3 36 0.00077 33.5 15.8 202 4-248 254-463 (898)
71 KOG2025|consensus 86.1 40 0.00087 33.9 17.7 61 10-71 81-147 (892)
72 KOG1967|consensus 85.6 21 0.00045 36.8 13.1 45 179-223 969-1018(1030)
73 COG1460 Uncharacterized protei 85.2 5.1 0.00011 30.5 6.8 63 198-266 15-80 (114)
74 KOG4224|consensus 84.6 15 0.00033 33.9 10.8 86 19-105 172-265 (550)
75 cd03572 ENTH_epsin_related ENT 84.6 1.7 3.6E-05 33.7 4.2 42 5-46 29-70 (122)
76 KOG1824|consensus 84.2 57 0.0012 34.0 17.2 93 177-269 147-246 (1233)
77 PF14664 RICTOR_N: Rapamycin-i 83.7 33 0.00071 31.9 13.0 61 175-235 120-182 (371)
78 cd03567 VHS_GGA VHS domain fam 83.1 11 0.00023 29.9 8.4 38 6-43 30-67 (139)
79 PF14663 RasGEF_N_2: Rapamycin 82.5 6.9 0.00015 29.8 6.9 37 9-45 3-39 (115)
80 COG5218 YCG1 Chromosome conden 81.8 56 0.0012 32.3 16.7 39 5-43 79-120 (885)
81 PF12460 MMS19_C: RNAPII trans 81.8 46 0.00099 31.2 22.9 205 17-244 2-238 (415)
82 PF07539 DRIM: Down-regulated 81.7 6.5 0.00014 31.2 6.6 65 7-75 7-74 (141)
83 cd03569 VHS_Hrs_Vps27p VHS dom 81.6 14 0.0003 29.3 8.5 35 9-43 36-70 (142)
84 PF11698 V-ATPase_H_C: V-ATPas 81.4 3.6 7.7E-05 31.7 4.8 48 166-227 66-113 (119)
85 PF01603 B56: Protein phosphat 80.6 51 0.0011 30.9 14.6 200 13-247 132-348 (409)
86 PF10363 DUF2435: Protein of u 79.8 14 0.00031 26.9 7.4 75 170-245 10-87 (92)
87 PF12719 Cnd3: Nuclear condens 78.9 21 0.00045 31.8 9.8 94 173-267 37-145 (298)
88 PF02985 HEAT: HEAT repeat; I 77.9 4 8.7E-05 23.1 3.2 25 203-227 3-27 (31)
89 PF00514 Arm: Armadillo/beta-c 77.8 3.9 8.5E-05 24.6 3.4 29 14-42 12-40 (41)
90 PF10363 DUF2435: Protein of u 77.8 15 0.00033 26.8 7.1 32 15-46 4-35 (92)
91 PF13513 HEAT_EZ: HEAT-like re 77.3 4.7 0.0001 25.8 3.9 37 4-40 14-54 (55)
92 PF11698 V-ATPase_H_C: V-ATPas 75.3 1.9 4.2E-05 33.1 1.8 39 4-42 71-114 (119)
93 PF05004 IFRD: Interferon-rela 74.7 65 0.0014 29.0 18.6 46 179-224 202-252 (309)
94 PF13513 HEAT_EZ: HEAT-like re 74.5 11 0.00024 24.0 5.1 27 198-224 26-52 (55)
95 PF00790 VHS: VHS domain; Int 74.0 30 0.00065 27.1 8.4 38 6-43 34-71 (140)
96 cd03561 VHS VHS domain family; 73.5 35 0.00075 26.5 8.6 35 9-43 32-66 (133)
97 smart00185 ARM Armadillo/beta- 73.1 6.2 0.00013 23.1 3.4 28 15-42 13-40 (41)
98 PF12830 Nipped-B_C: Sister ch 72.7 8.9 0.00019 31.8 5.3 58 173-230 18-75 (187)
99 PF05918 API5: Apoptosis inhib 71.4 86 0.0019 30.8 12.3 32 109-140 39-71 (556)
100 KOG0166|consensus 71.3 1E+02 0.0022 29.9 16.7 66 15-80 153-225 (514)
101 KOG1240|consensus 68.6 1.8E+02 0.0038 31.4 18.8 98 168-266 622-726 (1431)
102 PF10274 ParcG: Parkin co-regu 67.5 31 0.00068 28.6 7.4 58 172-229 47-109 (183)
103 KOG2759|consensus 67.4 82 0.0018 29.7 10.7 93 103-227 344-436 (442)
104 smart00288 VHS Domain present 67.0 58 0.0013 25.3 8.7 38 6-43 29-66 (133)
105 KOG1241|consensus 66.3 1.5E+02 0.0033 30.2 12.8 62 167-228 178-245 (859)
106 PF10521 DUF2454: Protein of u 64.1 1E+02 0.0022 27.3 10.6 33 14-46 119-151 (282)
107 PLN03076 ARF guanine nucleotid 63.9 2.6E+02 0.0056 31.7 17.7 81 19-103 1142-1232(1780)
108 KOG2213|consensus 63.2 33 0.00072 32.0 7.2 67 180-246 41-107 (460)
109 PF14631 FancD2: Fanconi anaem 62.6 1.2E+02 0.0026 33.4 12.5 117 108-245 190-307 (1426)
110 PF11841 DUF3361: Domain of un 62.5 47 0.001 27.0 7.3 16 213-228 73-88 (160)
111 PHA02855 anti-apoptotic membra 62.1 63 0.0014 26.3 7.8 33 12-44 74-107 (180)
112 PRK14981 DNA-directed RNA poly 61.6 16 0.00034 27.8 4.3 50 212-267 29-80 (112)
113 KOG0946|consensus 60.2 40 0.00088 34.3 7.7 33 14-46 122-154 (970)
114 KOG0915|consensus 60.2 2.6E+02 0.0056 31.0 13.8 184 3-207 1157-1359(1702)
115 KOG0413|consensus 59.4 7.8 0.00017 40.0 2.8 40 7-46 999-1038(1529)
116 KOG1241|consensus 56.7 1.6E+02 0.0035 30.0 11.1 195 9-232 85-291 (859)
117 KOG4535|consensus 56.7 16 0.00034 35.0 4.2 36 11-46 147-182 (728)
118 cd03572 ENTH_epsin_related ENT 56.4 44 0.00095 25.8 6.0 45 187-231 25-69 (122)
119 PF10163 EnY2: Transcription f 54.5 61 0.0013 23.2 6.2 50 215-264 35-85 (86)
120 KOG0414|consensus 54.5 3.1E+02 0.0066 29.5 15.0 54 177-230 373-429 (1251)
121 KOG2199|consensus 51.9 86 0.0019 29.3 7.9 39 5-43 36-74 (462)
122 COG5231 VMA13 Vacuolar H+-ATPa 51.0 1.7E+02 0.0036 26.9 9.4 29 200-228 399-427 (432)
123 PF11841 DUF3361: Domain of un 50.4 1.4E+02 0.003 24.3 10.5 78 176-260 73-158 (160)
124 PF10274 ParcG: Parkin co-regu 50.2 41 0.00088 28.0 5.2 42 14-55 80-123 (183)
125 KOG1240|consensus 49.9 3.7E+02 0.008 29.2 19.1 219 15-243 423-663 (1431)
126 PF14500 MMS19_N: Dos2-interac 49.0 52 0.0011 28.9 6.1 29 167-195 3-31 (262)
127 cd03561 VHS VHS domain family; 47.6 1.3E+02 0.0028 23.2 9.1 37 189-225 26-62 (133)
128 KOG1248|consensus 47.4 3.9E+02 0.0085 28.7 16.9 67 195-262 822-891 (1176)
129 PF08167 RIX1: rRNA processing 46.5 96 0.0021 25.0 6.9 57 168-224 30-92 (165)
130 KOG0211|consensus 46.1 3.5E+02 0.0076 27.8 16.7 88 179-266 573-667 (759)
131 PF14663 RasGEF_N_2: Rapamycin 45.8 34 0.00074 26.0 3.9 36 202-237 10-46 (115)
132 PF08158 NUC130_3NT: NUC130/3N 45.3 53 0.0012 21.3 4.1 43 1-43 2-48 (52)
133 COG5098 Chromosome condensatio 43.8 3.7E+02 0.0081 27.5 13.5 66 166-231 349-417 (1128)
134 KOG2023|consensus 41.6 3.9E+02 0.0085 27.1 16.0 58 170-227 181-242 (885)
135 COG1413 FOG: HEAT repeat [Ener 41.4 2.6E+02 0.0056 24.9 15.4 30 15-44 44-73 (335)
136 PF11099 M11L: Apoptosis regul 40.2 27 0.00059 28.4 2.6 32 12-43 62-94 (167)
137 KOG1293|consensus 39.2 4.1E+02 0.0089 26.6 16.0 67 163-229 461-533 (678)
138 PF06371 Drf_GBD: Diaphanous G 38.8 38 0.00083 27.4 3.5 51 178-228 131-186 (187)
139 cd03565 VHS_Tom1 VHS domain fa 38.6 1.9E+02 0.0042 22.7 8.4 30 14-43 38-68 (141)
140 KOG2160|consensus 38.3 3.2E+02 0.0069 25.1 12.2 89 176-264 180-281 (342)
141 PF11865 DUF3385: Domain of un 37.7 2.1E+02 0.0046 22.9 10.1 33 5-41 5-38 (160)
142 KOG0413|consensus 35.9 1.1E+02 0.0024 32.1 6.6 65 166-230 619-686 (1529)
143 KOG2160|consensus 35.2 1.4E+02 0.0031 27.4 6.7 62 18-79 128-196 (342)
144 PF08064 UME: UME (NUC010) dom 35.1 1.9E+02 0.0041 21.5 8.6 69 176-244 28-101 (107)
145 PF06012 DUF908: Domain of Unk 35.0 57 0.0012 29.6 4.3 30 15-44 27-56 (329)
146 KOG4464|consensus 34.1 49 0.0011 31.2 3.6 47 195-246 368-414 (532)
147 cd00197 VHS_ENTH_ANTH VHS, ENT 33.2 59 0.0013 24.3 3.5 34 9-42 32-65 (115)
148 smart00802 UME Domain in UVSB 33.1 2.1E+02 0.0045 21.4 7.1 67 178-244 30-101 (107)
149 COG5098 Chromosome condensatio 33.1 81 0.0018 31.9 5.0 55 179-233 987-1041(1128)
150 KOG4224|consensus 32.8 4.2E+02 0.0092 24.9 14.3 125 5-139 246-387 (550)
151 PF12630 Pox_polyA_pol_N: Poxv 32.6 1.2E+02 0.0026 22.8 4.7 60 166-225 7-74 (108)
152 KOG3666|consensus 32.3 3.5E+02 0.0076 27.6 9.1 79 47-126 405-494 (1141)
153 KOG0168|consensus 31.7 6.2E+02 0.014 26.5 13.3 179 51-265 169-364 (1051)
154 KOG3723|consensus 31.7 59 0.0013 31.9 3.8 72 3-75 188-262 (851)
155 KOG2828|consensus 31.2 57 0.0012 30.3 3.5 29 215-244 419-447 (454)
156 KOG2085|consensus 29.6 2.6E+02 0.0057 26.4 7.5 62 201-263 342-408 (457)
157 cd03569 VHS_Hrs_Vps27p VHS dom 29.0 2.9E+02 0.0062 21.7 8.3 21 204-224 45-65 (142)
158 KOG1087|consensus 28.9 1.3E+02 0.0027 29.0 5.5 46 14-61 38-93 (470)
159 KOG4524|consensus 28.8 2.3E+02 0.005 29.7 7.5 33 10-42 799-831 (1014)
160 KOG2005|consensus 28.7 1.8E+02 0.0039 29.4 6.5 68 199-266 47-126 (878)
161 PF14961 BROMI: Broad-minded p 27.8 2.7E+02 0.0059 30.0 8.0 66 181-246 177-251 (1296)
162 KOG4199|consensus 27.6 3.5E+02 0.0076 25.1 7.7 36 15-50 284-323 (461)
163 KOG2759|consensus 27.3 5.4E+02 0.012 24.4 14.3 70 17-86 117-193 (442)
164 COG5064 SRP1 Karyopherin (impo 27.3 4.3E+02 0.0093 24.6 8.2 45 17-61 202-255 (526)
165 COG5064 SRP1 Karyopherin (impo 26.4 5.3E+02 0.012 24.0 9.7 59 204-263 289-354 (526)
166 cd00256 VATPase_H VATPase_H, r 25.7 1.5E+02 0.0032 28.1 5.4 51 177-227 368-423 (429)
167 KOG2734|consensus 25.0 1.3E+02 0.0027 28.8 4.6 47 9-55 119-173 (536)
168 PF05804 KAP: Kinesin-associat 24.5 7.7E+02 0.017 25.2 20.3 99 163-265 290-398 (708)
169 KOG1293|consensus 24.3 6E+02 0.013 25.5 9.2 30 15-44 420-449 (678)
170 KOG1943|consensus 24.0 9.1E+02 0.02 25.9 18.0 39 8-46 335-373 (1133)
171 KOG1242|consensus 23.7 7.2E+02 0.016 24.6 19.4 49 198-246 293-344 (569)
172 cd03567 VHS_GGA VHS domain fam 23.6 3.6E+02 0.0079 21.1 7.3 77 189-265 27-116 (139)
173 PF08064 UME: UME (NUC010) dom 23.6 1.9E+02 0.0042 21.4 4.7 52 10-61 3-64 (107)
174 PF12348 CLASP_N: CLASP N term 23.1 4.4E+02 0.0094 21.8 16.2 81 179-261 110-202 (228)
175 PF13981 SopA: SopA-like centr 22.8 65 0.0014 25.3 2.1 47 5-51 81-131 (135)
176 cd07354 HN_L-delphilin-R1_like 22.3 3E+02 0.0064 19.6 6.7 59 12-75 5-63 (80)
177 PF12397 U3snoRNP10: U3 small 21.7 2.8E+02 0.0061 20.7 5.5 52 195-248 42-94 (121)
178 KOG0564|consensus 21.6 80 0.0017 30.4 2.7 60 185-244 223-296 (590)
179 smart00427 H2B Histone H2B. 21.5 80 0.0017 23.0 2.1 29 15-43 3-33 (89)
180 PF14500 MMS19_N: Dos2-interac 21.4 1.3E+02 0.0028 26.5 3.8 54 5-58 199-255 (262)
181 PF14726 RTTN_N: Rotatin, an a 21.0 3E+02 0.0065 20.3 5.2 50 205-254 35-89 (98)
182 cd03568 VHS_STAM VHS domain fa 20.2 4.4E+02 0.0095 20.7 8.9 53 173-225 47-106 (144)
183 KOG0414|consensus 20.0 2.5E+02 0.0055 30.1 6.0 86 178-264 938-1026(1251)
No 1
>KOG1059|consensus
Probab=100.00 E-value=9.8e-38 Score=292.14 Aligned_cols=236 Identities=41% Similarity=0.617 Sum_probs=208.2
Q ss_pred CccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhc--CCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364 1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC 78 (276)
Q Consensus 1 l~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~--~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~ 78 (276)
|+|++.+||+++....+++.+-|+||||||..+|++++++++ +|+|+-.+.|.+.+.|.+
T Consensus 168 lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffklltt------------------ 229 (877)
T KOG1059|consen 168 LYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVT------------------ 229 (877)
T ss_pred HHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhc------------------
Confidence 578999999999999999999999999999999999999999 468999999988876543
Q ss_pred hhcCCccCCChhhHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCC----CCchh
Q psy16364 79 SQNNYQYITNFEWYMTVLVELTRMEG---TRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQ----PSSRM 151 (276)
Q Consensus 79 ~~~~y~~~~~~~W~v~~ll~ll~~~~---~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~~~ 151 (276)
.+..|..+++++|+.-.. +..++++.+.+.+++.+ +.+|+.+|||++++... ..+..
T Consensus 230 --------SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~s--------T~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 230 --------SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMES--------TVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred --------cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHh--------hHHHHHHHHHHHHheeehhccCCCCc
Confidence 246799999999987532 35678888888888853 45778999999988642 11122
Q ss_pred hhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364 152 AEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 231 (276)
Q Consensus 152 ~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~ 231 (276)
.+...-|+ .=++.|+++.|+|+||+||.|+.|+++.+|.+++.|.+.|+.||.|.|++||-||+||+++|++++
T Consensus 294 ~asiqLCv------qKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 294 SASIQLCV------QKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred HHHHHHHH------HHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence 34555566 779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccCCccccCCCC
Q psy16364 232 TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276 (276)
Q Consensus 232 n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~~~~~f~ 276 (276)
|+++||+.||+|+..+++.+||.+++.+|+.+|+++||++|+||+
T Consensus 368 Nl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFE 412 (877)
T KOG1059|consen 368 NLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFE 412 (877)
T ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 999999999999999998899999999999999999999999996
No 2
>KOG1062|consensus
Probab=100.00 E-value=8e-38 Score=295.95 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=208.2
Q ss_pred ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-----CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364 2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVID 76 (276)
Q Consensus 2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-----~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~ 76 (276)
.|++++.|++++.+.+...++|+|+|+||...++.++.+||.. +.++++++.|++.|++.....|.
T Consensus 167 ~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ys--------- 237 (866)
T KOG1062|consen 167 VRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYS--------- 237 (866)
T ss_pred HHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCC---------
Confidence 5889999999999999999999999999999999999999975 24678888888888765443332
Q ss_pred HhhhcCCccC-CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364 77 ICSQNNYQYI-TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-FAVAQMSSLLASPSPPLSQPSSRMAEM 154 (276)
Q Consensus 77 ~~~~~~y~~~-~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~ 154 (276)
.+|.++ .++||+|..+++++++.|.. +.+.++.+.+++.++-.-.+ .-+...+.+|||++++....++ +++
T Consensus 238 ----peydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~--~~L 310 (866)
T KOG1062|consen 238 ----PEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN--SGL 310 (866)
T ss_pred ----CccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC--chH
Confidence 234442 37799999999999999875 57888888888876532111 1123446788888887655442 344
Q ss_pred hHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHH
Q psy16364 155 MFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLM 234 (276)
Q Consensus 155 L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~ 234 (276)
...++ +|+|+|+.+.++|+||+||.+|.+.++.+|.++++||.+|++||+|+|.+||+||+||+|+|+|.+|++
T Consensus 311 rvlai------niLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~ 384 (866)
T KOG1062|consen 311 RVLAI------NILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR 384 (866)
T ss_pred HHHHH------HHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH
Confidence 44455 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc---CCcccc
Q psy16364 235 EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ---NNYQYI 272 (276)
Q Consensus 235 ~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~---~~y~~~ 272 (276)
.+|+||+.||.+++ ++||.+++.+|+.++|+ ++-|+|
T Consensus 385 ~mv~eLl~fL~~~d-~~~k~~~as~I~~laEkfaP~k~W~i 424 (866)
T KOG1062|consen 385 VMVKELLEFLESSD-EDFKADIASKIAELAEKFAPDKRWHI 424 (866)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 99999999999997 59999999999999999 466665
No 3
>KOG1059|consensus
Probab=100.00 E-value=7.5e-35 Score=272.86 Aligned_cols=218 Identities=54% Similarity=0.827 Sum_probs=183.1
Q ss_pred CccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364 1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 80 (276)
Q Consensus 1 l~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~ 80 (276)
|.+|.+.||++|+.|.+.|++||+|.|+|||.+||+|+++|++++|+.+||+.||+++..++++.||.+++.+|+.+|+.
T Consensus 323 m~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCc-hhhhhhHHhh
Q psy16364 81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSS-RMAEMMFDEY 159 (276)
Q Consensus 81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~L~~~~ 159 (276)
++|.|++||+||..+++++.++.|..+|..|.+|++++..|+|++|++++..++.++.++-...+.+.+ .++++|++||
T Consensus 403 snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~Aaa 482 (877)
T KOG1059|consen 403 SNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAA 482 (877)
T ss_pred hhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877322333333 4789999999
Q ss_pred hccccchhhhccccCCCchHHHH------------------HHHHHHHHhhh----C-c--------cchHHHHHHHHHH
Q psy16364 160 SDRSSKIFNIKFSSRMPNHMKYL------------------GLLAMSKILKT----H-P--------KSVQSHRDLIMQC 208 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~n~ryl------------------~L~~l~~l~~~----~-~--------~~~~~~~~~i~~~ 208 (276)
||+|||....+++...+ -+.++.|+... . + .++......+-++
T Consensus 483 ------Wi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf 556 (877)
T KOG1059|consen 483 ------WILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQF 556 (877)
T ss_pred ------HHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcc
Confidence 99999998877753332 23334443221 1 1 1122233444445
Q ss_pred hcCCCHHHHHHHHHHH
Q psy16364 209 LDDKDESIRLRALDLL 224 (276)
Q Consensus 209 l~~~D~~iq~ralell 224 (276)
..+.|.++|.||-+.+
T Consensus 557 ~~s~d~EvQERA~~~~ 572 (877)
T KOG1059|consen 557 SGSSDLEVQERASEVL 572 (877)
T ss_pred cCccchhHHHHHHHHH
Confidence 5689999999966655
No 4
>KOG1077|consensus
Probab=99.98 E-value=1.3e-31 Score=250.45 Aligned_cols=219 Identities=22% Similarity=0.397 Sum_probs=195.3
Q ss_pred hhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 10 KSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
++|..|++.|+..|+ ++|.|||++|++|+++||+.+|++.||.+|++||..++. ..|+|++.|+..+++ +|++|
T Consensus 364 davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~-sireeivlKvAILaE----KyAtD 438 (938)
T KOG1077|consen 364 DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADY-SIREEIVLKVAILAE----KYATD 438 (938)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHH----HhcCC
Confidence 578899999999999 999999999999999999999999999999999999987 899999999999999 99999
Q ss_pred hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhh
Q psy16364 89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFN 168 (276)
Q Consensus 89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~il 168 (276)
..||++++++|++.+|+++++++|.++++++.+.+++|.+|.+++++.++.+. .++.+.. .|++++
T Consensus 439 y~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a---------~hE~mVK-----vggyiL 504 (938)
T KOG1077|consen 439 YSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPA---------CHENMVK-----VGGYIL 504 (938)
T ss_pred cchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhH---------HHHHHHH-----hhhhhh
Confidence 99999999999999999999999999999999999999999999999998754 3554433 346999
Q ss_pred hccccCCCc----------------------hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH--
Q psy16364 169 IKFSSRMPN----------------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL-- 224 (276)
Q Consensus 169 Gef~~~~~~----------------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell-- 224 (276)
|||++.... ..|-+-|++++|++...|+.....++.+-...+..|+++||||.||+
T Consensus 505 GEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql 584 (938)
T KOG1077|consen 505 GEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQL 584 (938)
T ss_pred hhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 999976432 36778899999999999999999999888899999999999999998
Q ss_pred HhcCCcchHHHHHHHHHHHhhhc
Q psy16364 225 YGMVSKKTLMEIVKKLMVHMDKA 247 (276)
Q Consensus 225 ~~l~~~~n~~~iv~~l~~~l~~~ 247 (276)
..+.+.+-++.+.+++.+|.+..
T Consensus 585 ~k~as~dvL~~vleeMPpF~er~ 607 (938)
T KOG1077|consen 585 SKLASTDVLQTVLEEMPPFPERE 607 (938)
T ss_pred HHhccchHHHHHHhhCCCCcccc
Confidence 44555677788888887776554
No 5
>KOG1077|consensus
Probab=99.97 E-value=9.9e-32 Score=251.34 Aligned_cols=244 Identities=23% Similarity=0.363 Sum_probs=193.7
Q ss_pred CccccccChhhHH--HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364 1 MSKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVID 76 (276)
Q Consensus 1 l~~i~~~~P~~v~--~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~ 76 (276)
+.|++|+.||++. +|.++|+.+|+|.|.+|..+|..|+..++.+ +.++.-++.-+..|.. |+.
T Consensus 172 lL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r-------------iv~ 238 (938)
T KOG1077|consen 172 LLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR-------------IVV 238 (938)
T ss_pred HHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH-------------HHh
Confidence 3588999999985 8999999999999999999999999999964 3455555544444321 221
Q ss_pred H--hhhcCC-ccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----------hhhHHHHHHHHHHhhcCCCCC
Q psy16364 77 I--CSQNNY-QYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV----------SAVRAFAVAQMSSLLASPSPP 143 (276)
Q Consensus 77 ~--~~~~~y-~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~----------~~~~~~~~~~~~~ll~~~~~~ 143 (276)
. .+..+| +|..|+||++.++++++...+..-+.....++.+++.+. ..++ +.+.+.+.+|+.++++
T Consensus 239 ~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq-~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 239 VVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQ-HSNAKNAVLFEAISLA 317 (938)
T ss_pred hcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchH-hhhhHHHHHHHHHHHH
Confidence 1 111345 445589999999999999865433333333333333321 1232 3455668888888877
Q ss_pred CCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc-CCCHHHHHHH
Q psy16364 144 LSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD-DKDESIRLRA 220 (276)
Q Consensus 144 ~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~-~~D~~iq~ra 220 (276)
+..++ -++.+..|+ ..+|.|+.+++.|+||++|..+.+|+...+ +.+..|+++|+..|+ ++|+||||||
T Consensus 318 ~h~D~--e~~ll~~~~------~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrra 389 (938)
T KOG1077|consen 318 IHLDS--EPELLSRAV------NQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRA 389 (938)
T ss_pred HHcCC--cHHHHHHHH------HHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 66554 368888898 999999999999999999999999998865 578899999999999 9999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 221 LDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 221 lell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
+||||+||+.+|++.||.+|++||+.+|. .+|+|++.|++.++||.
T Consensus 390 vDLLY~mcD~~Nak~IV~elLqYL~tAd~-sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 390 VDLLYAMCDVSNAKQIVAELLQYLETADY-SIREEIVLKVAILAEKY 435 (938)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999996 99999999999999994
No 6
>KOG1062|consensus
Probab=99.97 E-value=4.4e-30 Score=243.63 Aligned_cols=228 Identities=19% Similarity=0.338 Sum_probs=192.3
Q ss_pred CccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364 1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 80 (276)
Q Consensus 1 l~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~ 80 (276)
|.|.++..|.++++|+..|++||+|+|.+|++||++|+++|+|.+|++.+|++|+.||..+++ +||.+++.+|+.+++
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~-~~k~~~as~I~~laE- 414 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDE-DFKADIASKIAELAE- 414 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH-
Confidence 457899999999999999999999999999999999999999999999999999999999955 999999999999999
Q ss_pred cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhcCCCCC-CCCCCchhhhhhHHh
Q psy16364 81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV-SAVRAFAVAQMSSLLASPSPP-LSQPSSRMAEMMFDE 158 (276)
Q Consensus 81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~-~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~L~~~ 158 (276)
+|+|+..|+++++++.+..+|+.+..+++..+..++.+. +..+.+++.++...+...... +. ...+++.+
T Consensus 415 ---kfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is-----~e~l~qVa 486 (866)
T KOG1062|consen 415 ---KFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS-----QEPLLQVA 486 (866)
T ss_pred ---hcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh-----hhhHHHHH
Confidence 999999999999999999999999999999999999988 778888888776555332111 11 23455666
Q ss_pred hhccccchhhhccccCCCc------------------------------hHHHHHHHHHHHHhhhCccchHHHHHHHHHH
Q psy16364 159 YSDRSSKIFNIKFSSRMPN------------------------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQC 208 (276)
Q Consensus 159 ~~~~~~~~ilGef~~~~~~------------------------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~ 208 (276)
+ |++|||++..-+ -+|-.+|.|++||..+.+...++.++.|..+
T Consensus 487 ~------W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~ 560 (866)
T KOG1062|consen 487 S------WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSY 560 (866)
T ss_pred H------HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 6 999999944322 1355679999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q psy16364 209 LDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 209 l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l 244 (276)
..+.|.++||||.||-..+....+++..+-+.++-+
T Consensus 561 ~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~ 596 (866)
T KOG1062|consen 561 KSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSC 596 (866)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence 999999999999999844445566555554444443
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.87 E-value=1.1e-21 Score=188.05 Aligned_cols=204 Identities=23% Similarity=0.388 Sum_probs=172.2
Q ss_pred cccccChhhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 81 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~ 81 (276)
++.+.+|..+. +...+..++. |+|.+||++++++++.+++++|+..++++|.+++....+.+++.+++.+|..+|.
T Consensus 293 ~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~-- 369 (526)
T PF01602_consen 293 QLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE-- 369 (526)
T ss_dssp HHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH--
T ss_pred Hhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh--
Confidence 45677777777 6666667777 9999999999999999999999999999999999665444899999999999999
Q ss_pred CCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364 82 NYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD 161 (276)
Q Consensus 82 ~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~ 161 (276)
+|++++.|+++++++++...|..+..+++..+.+++.+.|+.+.+++..+...++... .++++..++
T Consensus 370 --~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~---------~~~~~~~~~-- 436 (526)
T PF01602_consen 370 --KFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDIS---------SPEALAAAI-- 436 (526)
T ss_dssp --HHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSS---------SHHHHHHHH--
T ss_pred --ccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhh---------HHHHHHHHH--
Confidence 8899999999999999999888889999999999999999999999999999998742 256778788
Q ss_pred cccchhhhccccCCCc--h------------------HHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc--CCCHHHH
Q psy16364 162 RSSKIFNIKFSSRMPN--H------------------MKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD--DKDESIR 217 (276)
Q Consensus 162 ~~~~~ilGef~~~~~~--n------------------~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~--~~D~~iq 217 (276)
|++|||++..++ . .|...++++.|+...+| +..+...+.+..+.. |.|.++|
T Consensus 437 ----wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 437 ----WILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp ----HHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHH
T ss_pred ----hhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHH
Confidence 999999987665 1 34456899999999988 445678888888888 9999999
Q ss_pred HHHHHHHHhc
Q psy16364 218 LRALDLLYGM 227 (276)
Q Consensus 218 ~ralell~~l 227 (276)
+||.||+ .+
T Consensus 513 ~Ra~~y~-~l 521 (526)
T PF01602_consen 513 DRAREYL-RL 521 (526)
T ss_dssp HHHHHHH-HH
T ss_pred HHHHHHH-HH
Confidence 9999999 44
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.79 E-value=3.1e-18 Score=164.19 Aligned_cols=163 Identities=23% Similarity=0.337 Sum_probs=122.1
Q ss_pred CCChhhHHHHHHHHHHhcCCcchH-----HHHHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 86 ITNFEWYMTVLVELTRMEGTRHGA-----LVAAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 86 ~~~~~W~v~~ll~ll~~~~~~~~~-----~i~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
..+.||.+..+++++......... .+.+.+...+. ..+++.-.+++.+..+... .+.+..++
T Consensus 202 ~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------------~~~~~~~~ 269 (526)
T PF01602_consen 202 SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------------PELLQKAI 269 (526)
T ss_dssp TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------HHHHHHHH
T ss_pred cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------------hHHHHhhH
Confidence 357899999999999875543211 23344444433 2344554455444433221 34566677
Q ss_pred hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCcchHHHHHH
Q psy16364 160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVK 238 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell~~l~~~~n~~~iv~ 238 (276)
..+++|+.+.++|+||++|.++..++..++..+. +...++.++. +.|.+||++|+++++.+++++|++.|++
T Consensus 270 ------~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~ 342 (526)
T PF01602_consen 270 ------NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILD 342 (526)
T ss_dssp ------HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred ------HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHH
Confidence 8999999999999999999999999999966666 6666677777 9999999999999999999999999999
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 239 KLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 239 ~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
+|++|+....+++||++++.+|..+|++.
T Consensus 343 eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 343 ELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 99999955433589999999999999884
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=99.66 E-value=5.6e-15 Score=145.52 Aligned_cols=241 Identities=14% Similarity=0.178 Sum_probs=168.9
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 82 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~ 82 (276)
.|.+++|++++.|...+.-+.+|++. |+..+|++++.|++++|+..|+++|..|....+. +|+.+.+.+|..++.
T Consensus 323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~-ef~r~aIrAIg~lA~--- 397 (746)
T PTZ00429 323 ALLVIFPNLLRTNLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDM-VFVVEVVRAIASLAI--- 397 (746)
T ss_pred HHHHHCHHHHHHHHHhhhcccCCcHH-HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH---
Confidence 35678999999998777766777775 9999999999999999999999999999987665 899999999999998
Q ss_pred CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364 83 YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR 162 (276)
Q Consensus 83 y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (276)
+|.....|+++.+++++...+.. ..++...+.+++.+.|+. +.+..+...+... .+. -++.....+
T Consensus 398 -k~~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~--~il~~L~~~~~~~-~i~------e~~AKaaii--- 463 (746)
T PTZ00429 398 -KVDSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPEL--LMLDTLVTDYGAD-EVV------EEEAKVSLL--- 463 (746)
T ss_pred -hChHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccH--HHHHHHHHhhccc-ccc------cHHHHHHHH---
Confidence 88889999999999999765443 346667788888887763 2333333322111 111 134444445
Q ss_pred ccchhhhccccCCCc-----------------hHHHHHHHHHHHHhhhCccchHHHHHHHHH-Hhc-CCCHHHHHHHHHH
Q psy16364 163 SSKIFNIKFSSRMPN-----------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQ-CLD-DKDESIRLRALDL 223 (276)
Q Consensus 163 ~~~~ilGef~~~~~~-----------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~-~l~-~~D~~iq~ralel 223 (276)
|++|||++..++ ..|+-.|++..|+....|.-.+.....++. |.+ +.|.++|.||..|
T Consensus 464 ---WILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y 540 (746)
T PTZ00429 464 ---WMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAY 540 (746)
T ss_pred ---HHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 999999876543 245566888888888888644554445554 444 6888999999999
Q ss_pred HHhcCCcch----HHHHHHHHHHHhhh---cCCchHHHHHHHHHHHHhcc
Q psy16364 224 LYGMVSKKT----LMEIVKKLMVHMDK---AEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 224 l~~l~~~~n----~~~iv~~l~~~l~~---~~~~~~~~~l~~~i~~~~~~ 266 (276)
. ++.+.+. .+.||-.=.+-+.. ..++...+++...|..++..
T Consensus 541 ~-rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssv 589 (746)
T PTZ00429 541 W-RLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIV 589 (746)
T ss_pred H-HHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeee
Confidence 8 5554432 34444211111111 12235777787777777654
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=99.57 E-value=1.7e-13 Score=135.14 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=84.0
Q ss_pred cccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCc
Q psy16364 171 FSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGT 250 (276)
Q Consensus 171 f~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~ 250 (276)
++.+.+++++|++|..+..+++.+|.....|...++-+.+|++- |+.+++|+++.|++++|+..|++||..|....+.
T Consensus 305 ~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~- 382 (746)
T PTZ00429 305 TLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDM- 382 (746)
T ss_pred HhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHH-HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCH-
Confidence 34566789999999999999999999999988777766667764 9999999999999999999999999999988774
Q ss_pred hHHHHHHHHHHHHhcc
Q psy16364 251 MYRDELLSKVIDICSQ 266 (276)
Q Consensus 251 ~~~~~l~~~i~~~~~~ 266 (276)
+|+++.+.+|..+|.+
T Consensus 383 ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 383 VFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999987
No 11
>KOG1058|consensus
Probab=99.50 E-value=1.1e-12 Score=125.09 Aligned_cols=243 Identities=16% Similarity=0.226 Sum_probs=173.6
Q ss_pred cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-CcHHHHHHHHHHhh--hhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364 7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLMEIVKKLMVHM--DKAEGTMYRDELLSKVIDICSQNNY 83 (276)
Q Consensus 7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n~~~iv~~L~~~L--~~~~~~~~r~~li~~I~~~~~~~~y 83 (276)
+.|++++...+.|..||++++..||+-|+--++.+-.. +..-.=+|+|+..+ ...|+ .-++....-++
T Consensus 127 kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~Dp-sCkRNAFi~L~-------- 197 (948)
T KOG1058|consen 127 KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDP-SCKRNAFLMLF-------- 197 (948)
T ss_pred CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCc-hhHHHHHHHHH--------
Confidence 78999999999999999999999999999999988754 22222235555443 22344 22222111111
Q ss_pred ccCCChh----hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCC-------Cchhh
Q psy16364 84 QYITNFE----WYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQP-------SSRMA 152 (276)
Q Consensus 84 ~~~~~~~----W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~-------~~~~~ 152 (276)
..|.+ |+...+.++= ..|+...--+.+.++++..+.|+.+..-++.+..+|...+.....+ -|+.+
T Consensus 198 --~~D~ErAl~Yl~~~idqi~-~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 198 --TTDPERALNYLLSNIDQIP-SFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred --hcCHHHHHHHHHhhHhhcc-CccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 22322 4433333321 1123333456788888888889888777888887775543322111 12346
Q ss_pred hhhHHhhhccccchhhhcc-ccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364 153 EMMFDEYSDRSSKIFNIKF-SSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 231 (276)
Q Consensus 153 ~~L~~~~~~~~~~~ilGef-~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~ 231 (276)
+.+++++ ..+-+. ....+||.+.+-|+.+..+...+.+..++....++..|.++|.++|++|+++.+.+++..
T Consensus 275 ~alk~Aa------~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 275 TALKAAA------STYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHH------HHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 6777776 444443 356789999999999999998888888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhc------CCchHHHHHHHHHHHHhccC
Q psy16364 232 TLMEIVKKLMVHMDKA------EGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 232 n~~~iv~~l~~~l~~~------~~~~~~~~l~~~i~~~~~~~ 267 (276)
|+++||..|-+.+.++ +...||+.|+.+|+.++-+.
T Consensus 349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence 9999999999999764 23589999999999998763
No 12
>KOG1058|consensus
Probab=99.41 E-value=6.9e-12 Score=119.74 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=129.2
Q ss_pred cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcC------CchhHHHHHHHHHHHhhh
Q psy16364 7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAE------GTMYRDELLSKVIDICSQ 80 (276)
Q Consensus 7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~------~~~~r~~li~~I~~~~~~ 80 (276)
.|-.++++....+++.|+.+|..||++++++.+++++..|+.++|..|.+++.++. ...||..++.+|+..+.
T Consensus 310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav- 388 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV- 388 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh-
Confidence 34567889999999999999999999999999999999999999999999986652 34799999999997776
Q ss_pred cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364 81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS 160 (276)
Q Consensus 81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~ 160 (276)
+|+.-+.-.+..+++.+.-........+...+.+++.+.|++|..+++++..-+..++. .++.+.++
T Consensus 389 ---~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS---------~ki~rgal- 455 (948)
T KOG1058|consen 389 ---KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRS---------SKICRGAL- 455 (948)
T ss_pred ---cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcc---------cccchhHH-
Confidence 78877777888888888776655567888999999999999999999998888876652 45677777
Q ss_pred ccccchhhhccccCCCc
Q psy16364 161 DRSSKIFNIKFSSRMPN 177 (276)
Q Consensus 161 ~~~~~~ilGef~~~~~~ 177 (276)
||+|||+...+.
T Consensus 456 -----wi~GeYce~~~~ 467 (948)
T KOG1058|consen 456 -----WILGEYCEGLSE 467 (948)
T ss_pred -----HHHHHHHhhhHH
Confidence 999999988763
No 13
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.06 E-value=2.5e-09 Score=100.13 Aligned_cols=213 Identities=14% Similarity=0.159 Sum_probs=158.4
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 82 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~ 82 (276)
++..++|+.+.-.-..+-.+.+|.+-+|..-|+.-+..--+.+++..+++.+..+...-.+ +|+.-++..+.++|-
T Consensus 329 ~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD-~FKiI~ida~rsLsl--- 404 (898)
T COG5240 329 QLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSD-GFKIIAIDALRSLSL--- 404 (898)
T ss_pred HHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhcc-CceEEeHHHHHHHHh---
Confidence 4556677776666666667777888888888877777777777888887777777766555 788888888888887
Q ss_pred CccCCChhhHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364 83 YQYITNFEWYMTVLVELTRMEGTR-HGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD 161 (276)
Q Consensus 83 y~~~~~~~W~v~~ll~ll~~~~~~-~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~ 161 (276)
.|+..-.-|.+.+.+.+...|.. ...-+.+.+.+++...|+.++.+.+.++..+++.+ .+++.....
T Consensus 405 -~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce---------y~~I~vrIL-- 472 (898)
T COG5240 405 -LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE---------YHQITVRIL-- 472 (898)
T ss_pred -hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc---------hhHHHHHHH--
Confidence 66544333566666666665543 34557788999999999999999999999998765 367877777
Q ss_pred cccchhhhccccCCCchHHHH-----------------HHHHHHHHhhh-CccchHHH-HHHHHHHhcCCCHHHHHHHHH
Q psy16364 162 RSSKIFNIKFSSRMPNHMKYL-----------------GLLAMSKILKT-HPKSVQSH-RDLIMQCLDDKDESIRLRALD 222 (276)
Q Consensus 162 ~~~~~ilGef~~~~~~n~ryl-----------------~L~~l~~l~~~-~~~~~~~~-~~~i~~~l~~~D~~iq~rale 222 (276)
.|+|+=+....+|.||+ ++.||.|++-. +....++- ...+-.||+|.|.++|.||.=
T Consensus 473 ----~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 473 ----GILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred ----HHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 89999888888887775 45777777643 23344554 555566999999999999999
Q ss_pred HHHhcCCcchHHH
Q psy16364 223 LLYGMVSKKTLME 235 (276)
Q Consensus 223 ll~~l~~~~n~~~ 235 (276)
++-.|-+++.+.+
T Consensus 549 ~l~~~~~~da~~p 561 (898)
T COG5240 549 LLRNMRLSDACEP 561 (898)
T ss_pred HHHhhhhhhhhhc
Confidence 9978877777666
No 14
>KOG1078|consensus
Probab=98.79 E-value=9.9e-08 Score=92.21 Aligned_cols=211 Identities=17% Similarity=0.250 Sum_probs=160.1
Q ss_pred ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364 2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 81 (276)
Q Consensus 2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~ 81 (276)
+++..++|+++.---..+-.+..|.+-+|..-|+..++.-.+.+|+..+++....+...-.+ +|+.-++.+|..+|.
T Consensus 307 nkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD-eFKivvvdai~sLc~-- 383 (865)
T KOG1078|consen 307 NKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD-EFKIVVVDAIRSLCL-- 383 (865)
T ss_pred HHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-cceEEeHHHHHHHHh--
Confidence 45667788888777777778888999999999999999888888888888887777776666 888889999999998
Q ss_pred CCccCCChhhHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364 82 NYQYITNFEWYMTVLVELTRMEGTR-HGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS 160 (276)
Q Consensus 82 ~y~~~~~~~W~v~~ll~ll~~~~~~-~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~ 160 (276)
+|+.--.-+.+-+-++++..|.. ....+.+.+++++..+|+.+..+..-++..+++... ..+.-...
T Consensus 384 --~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~---------~~i~~rIL- 451 (865)
T KOG1078|consen 384 --KFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEF---------TQIAVRIL- 451 (865)
T ss_pred --hccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccc---------hHHHHHHH-
Confidence 66644333556666667666543 345677888888888888888888888888877542 33333333
Q ss_pred ccccchhhhccccCCCchHHHH-----------------HHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy16364 161 DRSSKIFNIKFSSRMPNHMKYL-----------------GLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDL 223 (276)
Q Consensus 161 ~~~~~~ilGef~~~~~~n~ryl-----------------~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralel 223 (276)
.++|+=+-...++.+|+ +..++.|+..-++...+.....+..|+.|.|.++|-||.-+
T Consensus 452 -----hlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 452 -----HLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred -----HHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHH
Confidence 67777666555555543 56888898877788888888889999999999999999999
Q ss_pred HHhcCCcch
Q psy16364 224 LYGMVSKKT 232 (276)
Q Consensus 224 l~~l~~~~n 232 (276)
+..+.++++
T Consensus 527 l~~l~~~~~ 535 (865)
T KOG1078|consen 527 LKNLEEKDD 535 (865)
T ss_pred HHHhhhhhh
Confidence 966664444
No 15
>KOG1061|consensus
Probab=98.54 E-value=1.3e-06 Score=84.64 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=158.9
Q ss_pred ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364 4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY 83 (276)
Q Consensus 4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y 83 (276)
++.+.|+....++..+. |=-++-..|...-++.+.++++..|+..++.+|..|-...+. +|-++.+..|-.++.
T Consensus 306 il~~~p~~~~~~~~~Ff-~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~-~fvrkaIraig~~ai---- 379 (734)
T KOG1061|consen 306 ILQKRPEILKVEIKVFF-CKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDV-DFVRKAVRAIGRLAI---- 379 (734)
T ss_pred HHHhChHHHHhHhHeee-eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCH-HHHHHHHHHhhhhhh----
Confidence 46677885555554443 444556889999999999999999999999999998776665 677777877777765
Q ss_pred ccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccc
Q psy16364 84 QYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRS 163 (276)
Q Consensus 84 ~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~ 163 (276)
++... .-.+..++++++..-+++..++.--+++++.++|+.-...+..+..-++. +.+ ++.=.+.+
T Consensus 380 k~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~s---l~e------peak~ami---- 445 (734)
T KOG1061|consen 380 KAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDS---LQE------PEAKAALI---- 445 (734)
T ss_pred hhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccc---cCC------hHHHHHHH----
Confidence 33221 33889999999987778888899999999999988654444333333222 222 33333344
Q ss_pred cchhhhccccCCCchHHHH--------------H---HHHHHHHhhhCccchHHH-HHHHHHHhcC-CCHHHHHHHHHHH
Q psy16364 164 SKIFNIKFSSRMPNHMKYL--------------G---LLAMSKILKTHPKSVQSH-RDLIMQCLDD-KDESIRLRALDLL 224 (276)
Q Consensus 164 ~~~ilGef~~~~~~n~ryl--------------~---L~~l~~l~~~~~~~~~~~-~~~i~~~l~~-~D~~iq~ralell 224 (276)
|++|||.+..++-..++ + |.+-+|+.-..|..-++- +.++-.|.+| .++++|-|++.|-
T Consensus 446 --Wilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~ 523 (734)
T KOG1061|consen 446 --WILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYW 523 (734)
T ss_pred --HHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHH
Confidence 99999999988865554 2 345555555556555554 4444447766 5569999999996
Q ss_pred HhcC--CcchHHHHHHHHHHHhh---hcCCchHHHHHHHHHHHHhcc
Q psy16364 225 YGMV--SKKTLMEIVKKLMVHMD---KAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 225 ~~l~--~~~n~~~iv~~l~~~l~---~~~~~~~~~~l~~~i~~~~~~ 266 (276)
++. ++.-++.++..=.+-+. ..-++...+++...|..+++.
T Consensus 524 -RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssV 569 (734)
T KOG1061|consen 524 -RLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSV 569 (734)
T ss_pred -HHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccce
Confidence 443 34444444433221111 111357888888887777654
No 16
>KOG1060|consensus
Probab=97.73 E-value=0.0014 Score=64.40 Aligned_cols=249 Identities=14% Similarity=0.119 Sum_probs=147.4
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ 84 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~ 84 (276)
..+.|.+...|...+.=+=.|++ -+..--|++|..+++..|+..|.++|.-|.+.++. .|-..-+..|..++. .
T Consensus 349 s~~~~~lF~P~lKsFfv~ssDp~-~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~----~ 422 (968)
T KOG1060|consen 349 SIKRPTLFEPHLKSFFVRSSDPT-QVKILKLEILSNLANESNISEILRELQTYIKSSDR-SFAAAAVKAIGRCAS----R 422 (968)
T ss_pred HhcchhhhhhhhhceEeecCCHH-HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH----h
Confidence 34566666666666544444433 35666799999999999999999999999988775 566666777776665 3
Q ss_pred cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcccc
Q psy16364 85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSS 164 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~ 164 (276)
...-.+-..+-|+++++--...+-.+...-+..++.+.|..+.+....++.+++.+.. +.-+++ -
T Consensus 423 ~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~v----------p~ARA~-----I 487 (968)
T KOG1060|consen 423 IGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILV----------PAARAG-----I 487 (968)
T ss_pred hCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhh----------hhhhce-----e
Confidence 3322333344555555543222333444556666777788777788899999876532 222333 3
Q ss_pred chhhhccccCCCc----h--------------HHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q psy16364 165 KIFNIKFSSRMPN----H--------------MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLY 225 (276)
Q Consensus 165 ~~ilGef~~~~~~----n--------------~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell~ 225 (276)
+|.+|||++...- - .|+-.|..-.|+.-.+..-....++.+++.-+ |+.=.+|.||-=+=.
T Consensus 488 iWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~ 567 (968)
T KOG1060|consen 488 IWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQ 567 (968)
T ss_pred eeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHH
Confidence 6999999865431 2 33334555556666666656666666665443 677789999876653
Q ss_pred hcCCcchHHHHHHHHHHHhh-h------cCCchHHHHHHHHHHHHhccCCccccCCC
Q psy16364 226 GMVSKKTLMEIVKKLMVHMD-K------AEGTMYRDELLSKVIDICSQNNYQYITNF 275 (276)
Q Consensus 226 ~l~~~~n~~~iv~~l~~~l~-~------~~~~~~~~~l~~~i~~~~~~~~y~~~~~f 275 (276)
-+....++..-..+..=-=. . ..+++|+-..++.+. -+..-.|+-+++|
T Consensus 568 l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~~~gslS~lL-n~~a~GY~~lp~~ 623 (968)
T KOG1060|consen 568 LISPLEALSKHAREIFLASKPAPVLESSFKDRHYQLGSLSLLL-NAPAPGYEPLPNW 623 (968)
T ss_pred HhccHHHHHHHHHHHhhccCCCccCcccccCCCcccchHHHHh-cCcCcCCccCCCc
Confidence 33444433333333210000 0 012245554544433 3445567776665
No 17
>KOG1078|consensus
Probab=97.37 E-value=0.01 Score=58.43 Aligned_cols=223 Identities=13% Similarity=0.160 Sum_probs=144.9
Q ss_pred ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364 2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 81 (276)
Q Consensus 2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~ 81 (276)
+|+++..++.+.+|...+.+..++.+..+.--|+-+++.+.. |.+.-+.+++..+... .
T Consensus 160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk--~drla~sklv~~~~~~---~---------------- 218 (865)
T KOG1078|consen 160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRK--NDRLAVSKLVQKFTRG---S---------------- 218 (865)
T ss_pred hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHccc---c----------------
Confidence 467888999999999999999999899999999999998863 4455666666554321 0
Q ss_pred CCccCCChhhHHHHHH-HHHHhcCCcchHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 82 NYQYITNFEWYMTVLV-ELTRMEGTRHGALVAAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 82 ~y~~~~~~~W~v~~ll-~ll~~~~~~~~~~i~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
.+.+-+.|+..... +++.-. ..........+-+.+. +..-+..++..++..+... . ...+..++
T Consensus 219 --~~~~~A~~~lir~~~~~l~~~-~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~-~----------~r~l~pav 284 (865)
T KOG1078|consen 219 --LKSPLAVCMLIRIASELLKEN-QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT-N----------SRELAPAV 284 (865)
T ss_pred --ccchhHHHHHHHHHHHHhhhc-ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc-C----------HhhcchHH
Confidence 22233445433221 111111 1101111122222222 1222233344433333211 1 22233344
Q ss_pred hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy16364 160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKK 239 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~ 239 (276)
..+--|+++...-+||-+..++.+++..+|..+--.-..+.....|..-+|-.-|.-.+++=-+..|+..+++.
T Consensus 285 ------s~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~q 358 (865)
T KOG1078|consen 285 ------SVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQ 358 (865)
T ss_pred ------HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHH
Confidence 67778888888889999999999999999987766555577788888889999999888888899999888888
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 240 LMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 240 l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
.-.+...-++ +||.-.+..|..+|-+
T Consensus 359 I~~fv~disD-eFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 359 ISSFVSDISD-EFKIVVVDAIRSLCLK 384 (865)
T ss_pred HHHHHHhccc-cceEEeHHHHHHHHhh
Confidence 8888766555 7777777777777755
No 18
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.34 E-value=0.049 Score=51.22 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHH
Q psy16364 4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLM 55 (276)
Q Consensus 4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~ 55 (276)
++..++.+...+.+-|+++|-=..++....=++|+=+|+++.++.++...|+
T Consensus 102 ~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~EvlH~LL 153 (459)
T PF14764_consen 102 LLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVEVLHSLL 153 (459)
T ss_pred HHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHHHHHHHH
Confidence 4556778888999999999998889999999999999999999888765554
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.16 E-value=0.0081 Score=49.66 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=49.3
Q ss_pred ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH--HH-HHHHHHHhhhhcCCchhHHH
Q psy16364 4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL--ME-IVKKLMVHMDKAEGTMYRDE 69 (276)
Q Consensus 4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~--~~-iv~~L~~~L~~~~~~~~r~~ 69 (276)
+..++|.+++.|.+.+..||.|+|+.||+.|+.++..++..+.+ +. ++..++.-+...++ +.|..
T Consensus 15 L~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~-~Ir~~ 82 (178)
T PF12717_consen 15 LCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP-EIRSL 82 (178)
T ss_pred HHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH-HHHHH
Confidence 45689999999999999999999999999999999999876442 22 33555555544433 45543
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.77 E-value=0.52 Score=45.46 Aligned_cols=249 Identities=14% Similarity=0.130 Sum_probs=121.2
Q ss_pred Chhh-HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 8 HPKS-VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 8 ~P~~-v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
.|.. ..++.+.+..+|.++++.||.-++.-+..++..+.- ..+++.++..+...+. +.....+..+..++.
T Consensus 70 ~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 70 SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLAS 148 (503)
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhC
Confidence 4443 679999999999999999999999998887764321 3355666666654443 555555555556664
Q ss_pred hcCCccCCChhhH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHH--HHHHhhcCCCCCCCC-CCchh
Q psy16364 80 QNNYQYITNFEWY-----MTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVA--QMSSLLASPSPPLSQ-PSSRM 151 (276)
Q Consensus 80 ~~~y~~~~~~~W~-----v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~--~~~~ll~~~~~~~~~-~~~~~ 151 (276)
.. .....+ +..+.+++......+.-.+.+-+.++....++....... -+..++.+... ... -.-+.
T Consensus 149 ~~-----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlna 222 (503)
T PF10508_consen 149 HP-----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNA 222 (503)
T ss_pred Cc-----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHH
Confidence 21 111222 444555554322222233444455554444444333222 12222222110 000 00011
Q ss_pred hhhhHHhhhcc-c--------cchhhhcc-ccCCCch-HHHH---HH-HHHHHHhhhCccch----HHHHHHHHHHhcCC
Q psy16364 152 AEMMFDEYSDR-S--------SKIFNIKF-SSRMPNH-MKYL---GL-LAMSKILKTHPKSV----QSHRDLIMQCLDDK 212 (276)
Q Consensus 152 ~~~L~~~~~~~-~--------~~~ilGef-~~~~~~n-~ryl---~L-~~l~~l~~~~~~~~----~~~~~~i~~~l~~~ 212 (276)
-+++.+.+... + ..--+-.. .+..+++ .+.+ |. ..+..++...|..+ +.....+.+++++.
T Consensus 223 lell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~ 302 (503)
T PF10508_consen 223 LELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQ 302 (503)
T ss_pred HHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCC
Confidence 22222222100 0 00011111 1112222 1211 11 22334444444322 34455666778899
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHH------------HHHHHHhhhcCCchHHHHHHHHHHHHh
Q psy16364 213 DESIRLRALDLLYGMVSKKTLMEIV------------KKLMVHMDKAEGTMYRDELLSKVIDIC 264 (276)
Q Consensus 213 D~~iq~ralell~~l~~~~n~~~iv------------~~l~~~l~~~~~~~~~~~l~~~i~~~~ 264 (276)
|.+++.-|+|-+-.++....=+..+ +..-.+..... .+.|......+..+.
T Consensus 303 d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-~~lk~r~l~al~~il 365 (503)
T PF10508_consen 303 DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS-TELKLRALHALASIL 365 (503)
T ss_pred ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence 9999999999885555544333333 22223322222 367777777776663
No 21
>PRK09687 putative lyase; Provisional
Probab=96.74 E-value=0.34 Score=43.06 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHhhhcCCChhHHhhHHHHHHhh
Q psy16364 17 DLIMQCLDDKDESIRLRALDLLYGM 41 (276)
Q Consensus 17 ~~I~~~L~d~D~sIr~~aL~Ll~~l 41 (276)
+.+.+.|.|+|..||..|+..+..+
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~ 50 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLR 50 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3344555555555555555554443
No 22
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.68 E-value=0.19 Score=51.94 Aligned_cols=227 Identities=12% Similarity=0.044 Sum_probs=113.0
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC------ccCCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY------QYITN 88 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y------~~~~~ 88 (276)
-.+.+...|+|+|+.||+.|+..|-....+. .++.|.+-|...+. .+|...+..+..+.+...- ....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~----~~~~L~~aL~D~d~-~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~ 696 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG----FGPALVAALGDGAA-AVRRAAAEGLRELVEVLPPAPALRDHLGSP 696 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh----HHHHHHHHHcCCCH-HHHHHHHHHHHHHHhccCchHHHHHHhcCC
Confidence 3467888999999999999999999876543 45666666654443 7887776666544320000 00112
Q ss_pred hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCC--CCCCchhhhhhHHhhh-----
Q psy16364 89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPL--SQPSSRMAEMMFDEYS----- 160 (276)
Q Consensus 89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~L~~~~~----- 160 (276)
.++.....++.|...+... . ..+...+. ..+.+|..++..+..+ .....+. -.+. .+++=..++.
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~---~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~--~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-A---ALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDE--NREVRIAVAKGLATL 769 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-H---HHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCC--CHHHHHHHHHHHHHh
Confidence 2233333333333221110 0 12222221 2344666666655532 1110000 0000 1222222220
Q ss_pred -cc--ccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHH
Q psy16364 161 -DR--SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV 237 (276)
Q Consensus 161 -~~--~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv 237 (276)
+. .+.-.+.+++.+.+...|.-++.+|.++.. + +.....+...|+|+|..+|..|.+-|-.+-+++ .+
T Consensus 770 ~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~----a~ 840 (897)
T PRK13800 770 GAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC--P---PDDVAAATAALRASAWQVRQGAARALAGAAADV----AV 840 (897)
T ss_pred ccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c---chhHHHHHHHhcCCChHHHHHHHHHHHhccccc----hH
Confidence 00 011234445555555566666666655422 1 112234667888888888888888885554333 33
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364 238 KKLMVHMDKAEGTMYRDELLSKVIDI 263 (276)
Q Consensus 238 ~~l~~~l~~~~~~~~~~~l~~~i~~~ 263 (276)
+-|++-|...+ ...|.+-+..+..+
T Consensus 841 ~~L~~~L~D~~-~~VR~~A~~aL~~~ 865 (897)
T PRK13800 841 PALVEALTDPH-LDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHhcc
Confidence 44444444444 47777777666543
No 23
>KOG2023|consensus
Probab=96.64 E-value=0.098 Score=51.04 Aligned_cols=194 Identities=14% Similarity=0.227 Sum_probs=112.4
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCC----chhHHHHHHHHHHH-hhhc
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEG----TMYRDELLSKVIDI-CSQN 81 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~----~~~r~~li~~I~~~-~~~~ 81 (276)
+...--+..++++|.|+++-||..+=-++..+++. .+|.++.|.|..-|...+. ..| ..++||++- +..-
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~--~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAF--GALQKICEDSAQFL 163 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhH--HHHHHHHhhhHHHH
Confidence 33445567789999999998887777777788876 5788899999988876542 122 235555522 1110
Q ss_pred CCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364 82 NYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS 160 (276)
Q Consensus 82 ~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~ 160 (276)
+-.+ ..|-.-++.+++++++.+ +|.+|..++. |++..+... ++.|+...
T Consensus 164 ds~~~~rpl~~mipkfl~f~~h~------------------spkiRs~A~~-------cvNq~i~~~----~qal~~~i- 213 (885)
T KOG2023|consen 164 DSDVLTRPLNIMIPKFLQFFKHP------------------SPKIRSHAVG-------CVNQFIIIQ----TQALYVHI- 213 (885)
T ss_pred hhhcccCchHHhHHHHHHHHhCC------------------ChhHHHHHHh-------hhhheeecC----cHHHHHHH-
Confidence 0011 123333445555544433 2334544443 222221111 11222111
Q ss_pred ccccchhhhcc--ccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCcchHH
Q psy16364 161 DRSSKIFNIKF--SSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCL----DDKDESIRLRALDLLYGMVSKKTLM 234 (276)
Q Consensus 161 ~~~~~~ilGef--~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l----~~~D~~iq~ralell~~l~~~~n~~ 234 (276)
|+ ++-+-| ....+++.|--.-.++.-|....|.-...|..-|++++ +|+|.++---|+|+..+++..+-.+
T Consensus 214 D~---Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~ 290 (885)
T KOG2023|consen 214 DK---FLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICK 290 (885)
T ss_pred HH---HHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcH
Confidence 11 222222 14455677777777888888888876666665555544 7999999999999999998875444
Q ss_pred HHHH
Q psy16364 235 EIVK 238 (276)
Q Consensus 235 ~iv~ 238 (276)
.++.
T Consensus 291 ~~L~ 294 (885)
T KOG2023|consen 291 EVLQ 294 (885)
T ss_pred HHHH
Confidence 4443
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.53 E-value=0.55 Score=52.01 Aligned_cols=226 Identities=10% Similarity=0.059 Sum_probs=138.6
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcC-CCcHHH------HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVS-KKTLME------IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n~~~------iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
.-++.++++|.++|..++..|.-.+..++. .++.+. .++.|++.|+..+. ..+...+..+..++..
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~-~~q~~Aa~AL~nLi~~------ 560 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP-KGQEIAAKTLTKLVRT------ 560 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHhc------
Confidence 458889999999999999999999999985 345444 35678888876654 6777777777766542
Q ss_pred CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh------hh-h-----HHHHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364 87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV------SA-V-----RAFAVAQMSSLLASPSPPLSQPSSRMAEM 154 (276)
Q Consensus 87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~------~~-~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 154 (276)
..+..+..+..++...+ ..+.....+++.+. .+ . ...++..+..+++..+ .++
T Consensus 561 -~d~~~I~~Lv~LLlsdd----~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs----------~~i 625 (2102)
T PLN03200 561 -ADAATISQLTALLLGDL----PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK----------EET 625 (2102)
T ss_pred -cchhHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC----------HHH
Confidence 11223333444432221 22222222222111 01 0 1125556666665432 355
Q ss_pred hHHhhhccccchhhhccccCCCch-----------------------HHHHHHHHHHHHhhhCc-----cchH-HHHHHH
Q psy16364 155 MFDEYSDRSSKIFNIKFSSRMPNH-----------------------MKYLGLLAMSKILKTHP-----KSVQ-SHRDLI 205 (276)
Q Consensus 155 L~~~~~~~~~~~ilGef~~~~~~n-----------------------~ryl~L~~l~~l~~~~~-----~~~~-~~~~~i 205 (276)
-+.++ |+++.|......+ .+.-+-.+|..+..... ..+. ....-+
T Consensus 626 kk~Aa------~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL 699 (2102)
T PLN03200 626 QEKAA------SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPL 699 (2102)
T ss_pred HHHHH------HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH
Confidence 66666 8888876654432 11122244444443111 1111 235667
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCcc-hHH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhccCC
Q psy16364 206 MQCLDDKDESIRLRALDLLYGMVSKK-TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 268 (276)
Q Consensus 206 ~~~l~~~D~~iq~ralell~~l~~~~-n~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~ 268 (276)
++.|++.|..++..|++-+..++... +.. .++..|.+.|..-++ .-|+.-+..+..+|....
T Consensus 700 ~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~-~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 700 IKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL-EGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh-HHHHHHHHHHHHHHhCCC
Confidence 88899999999999999987776544 332 346778888887764 889999999999998753
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.48 E-value=0.075 Score=43.84 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=57.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCccchH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHhhh
Q psy16364 172 SSRMPNHMKYLGLLAMSKILKTHPKSVQ-SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDK 246 (276)
Q Consensus 172 ~~~~~~n~ryl~L~~l~~l~~~~~~~~~-~~~~~i~~~l~~~D~~iq~ralell~~l~~~---~n~~~iv~~l~~~l~~ 246 (276)
+.+.++..|..++.++.+|+..+.--.. .....++.++.|+|.+||.-|..++..+..+ +.+...+.+++.+|..
T Consensus 34 L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 34 LRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 3566678999999999999987754343 4447888899999999999999998666544 5577777777777755
No 26
>KOG1060|consensus
Probab=96.44 E-value=0.24 Score=49.24 Aligned_cols=89 Identities=13% Similarity=0.281 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364 177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDEL 256 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l 256 (276)
...+|+.|..+..++...|+....|.+-++-+-.|++ .++.-=+|.|..+.|..|+..|..|+..|+..++. .|-..-
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~-~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~-~faa~a 412 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT-QVKILKLEILSNLANESNISEILRELQTYIKSSDR-SFAAAA 412 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH-HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch-hHHHHH
Confidence 3478888998888888888888888776554433432 45556688899999999999999999999999885 788888
Q ss_pred HHHHHHHhccC
Q psy16364 257 LSKVIDICSQN 267 (276)
Q Consensus 257 ~~~i~~~~~~~ 267 (276)
+..|-.+|...
T Consensus 413 V~AiGrCA~~~ 423 (968)
T KOG1060|consen 413 VKAIGRCASRI 423 (968)
T ss_pred HHHHHHHHHhh
Confidence 88888777653
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.42 E-value=0.14 Score=56.51 Aligned_cols=207 Identities=13% Similarity=0.153 Sum_probs=114.7
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcH-----HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc---
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTL-----MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ--- 84 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~-----~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~--- 84 (276)
-++.+.++|++++..++..|...+..++.. +++ ...|+.|+..|...+. +.+.+....+..+....+..
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~-~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE-AVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh-HHHHHHHHHHHHHHhCCCHHHHH
Confidence 467889999999999999999999999863 222 2357888888876554 67777777777665310000
Q ss_pred cCCChhhHHHHHHHHHHhcCCcchHHHHH----------------------HHHHHHHH-hhhhHHHHHHHHHHhhcCCC
Q psy16364 85 YITNFEWYMTVLVELTRMEGTRHGALVAA----------------------QMMDVAIR-VSAVRAFAVAQMSSLLASPS 141 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~----------------------~l~~vi~~-~~~~~~~~~~~~~~ll~~~~ 141 (276)
+... .=.+.-+++++............. .+..++.. .+..|..++..+..+.....
T Consensus 689 ~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 689 SYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 0000 001334555555432211111112 22222221 12233344444444433211
Q ss_pred CCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHH--HHHHHHHHhhhCc------------cchHHHHHHHHH
Q psy16364 142 PPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYL--GLLAMSKILKTHP------------KSVQSHRDLIMQ 207 (276)
Q Consensus 142 ~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl--~L~~l~~l~~~~~------------~~~~~~~~~i~~ 207 (276)
..+++...+...++.--+-+++...+....-. +|+++..+++... -..+.-.+-++.
T Consensus 768 ---------~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~ 838 (2102)
T PLN03200 768 ---------VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVR 838 (2102)
T ss_pred ---------hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHH
Confidence 12333333311122233334444444333323 6777777777521 113445677888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCcch
Q psy16364 208 CLDDKDESIRLRALDLLYGMVSKKT 232 (276)
Q Consensus 208 ~l~~~D~~iq~ralell~~l~~~~n 232 (276)
||.+..+++|.||.|.+..+|...-
T Consensus 839 ~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 839 CLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHHcCChHHHHHHHHHHHHHhccCh
Confidence 9999999999999999999997653
No 28
>PRK09687 putative lyase; Provisional
Probab=96.32 E-value=0.54 Score=41.79 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=39.4
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-HHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LMEIVKKLMVHMDKAEGTMYRDELLSKVI 75 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~~~iv~~L~~~L~~~~~~~~r~~li~~I~ 75 (276)
-.+.+..++.|+|+.+|..|...|..+-.+.. -...++.|...+....+...|...+..+.
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG 116 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 35567778899999999999999998875443 24555666554333333356655554444
No 29
>KOG2171|consensus
Probab=96.25 E-value=0.28 Score=50.45 Aligned_cols=189 Identities=17% Similarity=0.260 Sum_probs=114.3
Q ss_pred HHhHHHHHhhh-cCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 13 QSHRDLIMQCL-DDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 13 ~~~~~~I~~~L-~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
+.-+..++.++ .++-++||++-.+++.+++.. .-|-++++-|.+-.+..++ .+|+ ..-.|+..+.. .|...
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~-~~rE-~al~il~s~~~---~~~~~ 152 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNP-SLRE-SALLILSSLPE---TFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCc-chhH-HHHHHHHhhhh---hhccc
Confidence 45666677775 479999999999999999863 4577888877777666655 6664 44455544432 44433
Q ss_pred hhhHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364 89 FEWYMTVLVELTRM-EGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF 167 (276)
Q Consensus 89 ~~W~v~~ll~ll~~-~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i 167 (276)
..=|.+.+..++.- .++.... + |+-++| ++..++..+++... .......++-... .+
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~-v---------r~~a~r--A~~a~~~~~~~~~~----~~~~~~~llP~~l------~v 210 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSP-V---------RVAAVR--ALGAFAEYLENNKS----EVDKFRDLLPSLL------NV 210 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcch-H---------HHHHHH--HHHHHHHHhccchH----HHHHHHHHhHHHH------HH
Confidence 33355566666543 2222111 1 122222 33344444431100 0000111122222 67
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHH-Hh-----cCCCHHHHHHHHHHHHhcC
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQ-CL-----DDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~-~l-----~~~D~~iq~ralell~~l~ 228 (276)
+++....-+...--..+.++..++...|.+..+|...|+. +| ++.|.++|++|+|++..+.
T Consensus 211 l~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 211 LQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLS 277 (1075)
T ss_pred hHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 7777666555444578899999999999999888777776 44 4789999999999996653
No 30
>KOG1824|consensus
Probab=96.10 E-value=0.31 Score=49.47 Aligned_cols=218 Identities=12% Similarity=0.133 Sum_probs=119.5
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHH-HHHHHHhhhcCCccCC
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELL-SKVIDICSQNNYQYIT 87 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li-~~I~~~~~~~~y~~~~ 87 (276)
+....++...|+++++.|...|+.+|---+-++. -.|....+|.++.+.... .+|.+++ ....+.... -..
T Consensus 852 ~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~-vgnl~~yLpfil~qi~sq---pk~QyLLLhSlkevi~~----~sv 923 (1233)
T KOG1824|consen 852 LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLA-VGNLPKYLPFILEQIESQ---PKRQYLLLHSLKEVIVS----ASV 923 (1233)
T ss_pred CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhh-cCchHhHHHHHHHHHhcc---hHhHHHHHHHHHHHHHH----hcc
Confidence 3344577889999999999999998877666654 457777778777765533 2343332 222222110 001
Q ss_pred ChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccch
Q psy16364 88 NFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSA-VRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKI 166 (276)
Q Consensus 88 ~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 166 (276)
+ .+ .....+||..+..=+...++ .|+-..+.+..+ -.++ ++.|. .
T Consensus 924 d----------~~----~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL-~l~e----------pesLl---------p 969 (1233)
T KOG1824|consen 924 D----------GL----KPYVEKIWALLFKHCECAEEGTRNVVAECLGKL-VLIE----------PESLL---------P 969 (1233)
T ss_pred c----------hh----hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH-HhCC----------hHHHH---------H
Confidence 1 00 01123444444333322221 222222222222 1111 22222 2
Q ss_pred hhhccccCCCchHHHHHHHHHHHHhhhCccchH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcC-C-cchHHHHHHHH
Q psy16364 167 FNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYGMV-S-KKTLMEIVKKL 240 (276)
Q Consensus 167 ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~----~~~~~i~~~l~~~D~~iq~ralell~~l~-~-~~n~~~iv~~l 240 (276)
-+-+++.+...+.|-..+++.-....-.|.-+. +....++..++|||..+||-|+-.+-.-+ | ++-++++.++|
T Consensus 970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeL 1049 (1233)
T KOG1824|consen 970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPEL 1049 (1233)
T ss_pred HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHH
Confidence 234445566777888777776666655554333 33334555779999999999999885444 3 46678888888
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHhccCCccccCC
Q psy16364 241 MVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 274 (276)
Q Consensus 241 ~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~~~~~ 274 (276)
++-|-.- ...|.|++.. .|+.-+.|+.|
T Consensus 1050 Lp~Ly~e--TkvrkelIre----VeMGPFKH~VD 1077 (1233)
T KOG1824|consen 1050 LPLLYSE--TKVRKELIRE----VEMGPFKHTVD 1077 (1233)
T ss_pred HHHHHHh--hhhhHhhhhh----hcccCcccccc
Confidence 8877442 2566666543 34444444443
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.91 E-value=0.12 Score=38.56 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=65.9
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-HHH------
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LME------ 235 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n-~~~------ 235 (276)
+.+++...+...|.-++.++..++...+.... +..+.+..+|++.|..+|..|+-.+..++.... ...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 44444545556777777777777765433222 345678889999999999999999999986552 222
Q ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 236 IVKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 236 iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
+++.|++.+...+ ...++....-+..+|+
T Consensus 92 ~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 92 GVPKLVNLLDSSN-EDIQKNATGALSNLAS 120 (120)
T ss_pred ChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence 3555666665554 5888888888777765
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.51 E-value=2.4 Score=40.92 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=64.3
Q ss_pred hhhccccCCCchHHHHHHHHHHHHhhhCcc--------ch--------H-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 167 FNIKFSSRMPNHMKYLGLLAMSKILKTHPK--------SV--------Q-SHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 167 ilGef~~~~~~n~ryl~L~~l~~l~~~~~~--------~~--------~-~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
-.|.+.......+|.-+|.++..+....+. .. + .....++..++.|=+++|.-|+.++.+++.
T Consensus 341 ~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 341 AIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 345555555566787788888887554332 00 0 011167778888889999999999999998
Q ss_pred cchHHHHHH---HHHHHhhh--cC----CchHHHHHHHHHHHHhc
Q psy16364 230 KKTLMEIVK---KLMVHMDK--AE----GTMYRDELLSKVIDICS 265 (276)
Q Consensus 230 ~~n~~~iv~---~l~~~l~~--~~----~~~~~~~l~~~i~~~~~ 265 (276)
..--..-+- .+++||.. ++ ..+.|-+++..+.....
T Consensus 421 ~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 421 QPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred CHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 765444433 34555522 22 24788889988886544
No 33
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=95.51 E-value=0.0085 Score=37.29 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=31.8
Q ss_pred ccccccChhhHH--HhHHHHHhhhcCCChhHHhhHHHHH
Q psy16364 2 SKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLL 38 (276)
Q Consensus 2 ~~i~~~~P~~v~--~~~~~I~~~L~d~D~sIr~~aL~Ll 38 (276)
..++.++|.++. ..+..|...|.|++++||.+|++++
T Consensus 4 ~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 4 SSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 356778888875 7888899999999999999999985
No 34
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.41 E-value=2.4 Score=39.81 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=98.0
Q ss_pred HhHHHHHhh-hcCCChhHHhhHHHHHHhhcCCC----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 14 SHRDLIMQC-LDDKDESIRLRALDLLYGMVSKK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 14 ~~~~~I~~~-L~d~D~sIr~~aL~Ll~~l~~~~----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
+..+.++.. ++.+++..|..++.++..++||- .+.+++..+...+....+...+...+.-
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------------- 253 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEI--------------- 253 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHH---------------
Confidence 445555544 55678999999999999999982 2344444444443111111222221111
Q ss_pred hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhH-Hhhhccccchh
Q psy16364 89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMF-DEYSDRSSKIF 167 (276)
Q Consensus 89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~i 167 (276)
.-|... =+-+-|...+.+..+.+.+++.. +++...+.+.+..++.+...+.+......-..|+ +=.......-+
T Consensus 254 ~~Wi~K----aLv~R~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L 328 (415)
T PF12460_consen 254 LIWITK----ALVMRGHPLATELLDKLLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL 328 (415)
T ss_pred HHHHHH----HHHHcCCchHHHHHHHHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence 113321 11122233345555555555533 4444445555555554411111111111112221 11100000112
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCccc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKS-----VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 231 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~-----~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~ 231 (276)
+..|-... +..|---|.|+..+++.-|.. .++....++++|+-+|.+++.-+++-+..+....
T Consensus 329 ~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 329 LEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 23332222 225555567777777765532 3455677788999999999999999996665543
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.97 E-value=2.5 Score=43.89 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364 177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDEL 256 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l 256 (276)
..+|.-+..+|.++.. ++..+.+...|+|+|..+|+.|..-|-.+-..+..... |..-+...+ ...|.+-
T Consensus 821 ~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~---L~~al~D~d-~~Vr~~A 890 (897)
T PRK13800 821 WQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA---LTTALTDSD-ADVRAYA 890 (897)
T ss_pred hHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH---HHHHHhCCC-HHHHHHH
Confidence 3456666666654321 24457788999999999999999999665333343333 333333344 5788776
Q ss_pred HHHH
Q psy16364 257 LSKV 260 (276)
Q Consensus 257 ~~~i 260 (276)
+..+
T Consensus 891 ~~aL 894 (897)
T PRK13800 891 RRAL 894 (897)
T ss_pred HHHH
Confidence 6554
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.90 E-value=0.52 Score=41.31 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=55.1
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-Cc---HHHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT---LMEIVKKLMVHMDKA-EGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n---~~~iv~~L~~~L~~~-~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
.-++.|.+.|+++++.+|.+|+..+..+... +| ++..++++.+..... -++..+..-+..+..++-.++|.+..
T Consensus 54 Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l- 132 (254)
T PF04826_consen 54 GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML- 132 (254)
T ss_pred CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-
Confidence 3467889999999999999999999998643 44 344455555543332 23355555555566666555654432
Q ss_pred hhhHHHHHHHHHHh
Q psy16364 89 FEWYMTVLVELTRM 102 (276)
Q Consensus 89 ~~W~v~~ll~ll~~ 102 (276)
. =++.-+++++..
T Consensus 133 ~-~~i~~ll~LL~~ 145 (254)
T PF04826_consen 133 A-NYIPDLLSLLSS 145 (254)
T ss_pred H-hhHHHHHHHHHc
Confidence 1 245556666654
No 37
>KOG1020|consensus
Probab=94.59 E-value=0.99 Score=48.04 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=80.6
Q ss_pred HHHHHHHHH-HhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHH
Q psy16364 112 AAQMMDVAI-RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKI 190 (276)
Q Consensus 112 ~~~l~~vi~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l 190 (276)
...++.++. ..+++|.+|.+.++.+.+....+-. -+.+.. .+-|+|.++... .|=-+++.+.+.
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~-----~~dvq~---------~Vh~R~~Dssas-VREAaldLvGrf 882 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLS-----RPDVQE---------AVHGRLNDSSAS-VREAALDLVGRF 882 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc-----CHHHHH---------HHHHhhccchhH-HHHHHHHHHhhh
Confidence 334444443 2457899999988888766432211 133332 347888777654 787888888899
Q ss_pred hhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Q psy16364 191 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLMEIVKK 239 (276)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~-~n~~~iv~~ 239 (276)
+-.+|+.+.++.+.|.+-..|+.+++|+|+...+-.||.. ++...++.-
T Consensus 883 vl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~ 932 (1692)
T KOG1020|consen 883 VLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM 932 (1692)
T ss_pred hhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 9999999999999999999999999999999998888753 344444333
No 38
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.40 E-value=3.5 Score=40.17 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=46.2
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHHHHHHHHHHhhhhcC
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEIVKKLMVHMDKAE 62 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~~iv~~L~~~L~~~~ 62 (276)
|.++..|++-++-++..+++.+|.|..||..|+-=|-.+|. ++.+..++.-|.+.|..-+
T Consensus 48 kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 48 KFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---
T ss_pred HHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhccc
Confidence 56788999999999999999999999999999999999995 5678888888887766433
No 39
>KOG1061|consensus
Probab=94.30 E-value=0.9 Score=45.07 Aligned_cols=87 Identities=13% Similarity=0.280 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHH
Q psy16364 178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELL 257 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~ 257 (276)
-+.|++|.-...+.+..|+.. .+...++-|-.+.-+.++.-=+|.+..+++.+|+..++.||..|-..-|. +|=++-+
T Consensus 294 e~qyvaLrNi~lil~~~p~~~-~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~-~fvrkaI 371 (734)
T KOG1061|consen 294 EIQYVALRNINLILQKRPEIL-KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDV-DFVRKAV 371 (734)
T ss_pred hhhHHHHhhHHHHHHhChHHH-HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCH-HHHHHHH
Confidence 578888877777777777733 33333333444555677778888888889999999999999998766663 7777777
Q ss_pred HHHHHHhcc
Q psy16364 258 SKVIDICSQ 266 (276)
Q Consensus 258 ~~i~~~~~~ 266 (276)
..|-.++-|
T Consensus 372 raig~~aik 380 (734)
T KOG1061|consen 372 RAIGRLAIK 380 (734)
T ss_pred HHhhhhhhh
Confidence 766666654
No 40
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.21 E-value=0.071 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.2
Q ss_pred HHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364 16 RDLIMQCLDDKDESIRLRALDLLYGMV 42 (276)
Q Consensus 16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~ 42 (276)
++.++++|+|+++.||..|..-+-.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 577899999999999999999888775
No 41
>KOG1020|consensus
Probab=93.79 E-value=7.8 Score=41.70 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=30.3
Q ss_pred CchHHHHH-HHHHHHHhhhCccchH-HHHHHHHHHhcCC
Q psy16364 176 PNHMKYLG-LLAMSKILKTHPKSVQ-SHRDLIMQCLDDK 212 (276)
Q Consensus 176 ~~n~ryl~-L~~l~~l~~~~~~~~~-~~~~~i~~~l~~~ 212 (276)
+++.|+++ +.+|..++.+.|.+.- .|..++..+|.+.
T Consensus 1049 ~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~ 1087 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK 1087 (1692)
T ss_pred cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc
Confidence 35667776 6788889999998776 9999999999876
No 42
>KOG2259|consensus
Probab=93.67 E-value=5.5 Score=39.35 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364 179 MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDEL 256 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l 256 (276)
.|.-++.+|..++.. ....+++..+|+.+|.|..+++|+-..|+| ....+.+-+...|.+|++-|... |.=|.++
T Consensus 426 VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky--PqDrd~i 502 (823)
T KOG2259|consen 426 VRLKAIFALTMISVH-LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKY--PQDRDEI 502 (823)
T ss_pred HHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC--CCCcHHH
Confidence 455566666666654 666778889999999999999999999998 23345666777788888888664 1235566
Q ss_pred HHHHHHHhccC
Q psy16364 257 LSKVIDICSQN 267 (276)
Q Consensus 257 ~~~i~~~~~~~ 267 (276)
..-+..+..++
T Consensus 503 ~~cm~~iGqnH 513 (823)
T KOG2259|consen 503 LRCMGRIGQNH 513 (823)
T ss_pred HHHHHHHhccC
Confidence 66666665554
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.60 E-value=0.36 Score=35.80 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHhhhCccchH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 178 HMKYLGLLAMSKILKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~~~----~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
|.|+=||.++...+..-+.... ...+-++.|+.|.|..+|.=|+|-++.++.
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK 56 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 5677788888887766554444 445556679999999999999999988864
No 44
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.55 E-value=5.1 Score=40.41 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=44.5
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHHhccC
Q psy16364 208 CLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK--AEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 208 ~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~--~~~~~~~~~l~~~i~~~~~~~ 267 (276)
+-.+.|..+.-.=++.+..+.+.+|...+..|++.|... .+ +++=++.+..|..++.+.
T Consensus 328 ~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~-~e~v~~~ik~lgd~~sk~ 388 (757)
T COG5096 328 IEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHID-AEMVSEAIKALGDLASKA 388 (757)
T ss_pred hhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhhhh
Confidence 444566666666667777888999999999999999877 55 477778888887777664
No 45
>KOG0915|consensus
Probab=93.52 E-value=13 Score=40.18 Aligned_cols=224 Identities=14% Similarity=0.128 Sum_probs=120.3
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-Cc-HHHHHHHHHHhhh-hcCCchhHHHHHHH--HHHHhhhcCCccCCC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT-LMEIVKKLMVHMD-KAEGTMYRDELLSK--VIDICSQNNYQYITN 88 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n-~~~iv~~L~~~L~-~~~~~~~r~~li~~--I~~~~~~~~y~~~~~ 88 (276)
.-++++.+-=-|||..|+.+--++=-+++.. ++ +.+..++..+.|- .....+||..-..- +.++.. .+|
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~------g~~ 1071 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ------GRP 1071 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc------CCC
Confidence 4455555555699999999999998888865 33 3334444444332 12223555432111 111111 123
Q ss_pred hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhh-hhH---HHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcccc
Q psy16364 89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVS-AVR---AFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSS 164 (276)
Q Consensus 89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~-~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~ 164 (276)
+.-..+++ +++|+.+..+.--.. ++| ..+.+.++.+. ++.+..+.+-.+.+++-.+.
T Consensus 1072 ~~~~~e~l------------pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~--vr~~d~~~~~~~~~~l~~iL----- 1132 (1702)
T KOG0915|consen 1072 FDQVKEKL------------PELWEAAFRVMDDIKESVREAADKAARALSKLC--VRICDVTNGAKGKEALDIIL----- 1132 (1702)
T ss_pred hHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcccCCcccHHHHHHHHH-----
Confidence 22222322 345555444433221 122 12233333332 11111111112344443322
Q ss_pred chhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHH---------------HHHHHhcCCCHHHHHHHHHHH-HhcC
Q psy16364 165 KIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRD---------------LIMQCLDDKDESIRLRALDLL-YGMV 228 (276)
Q Consensus 165 ~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~---------------~i~~~l~~~D~~iq~ralell-~~l~ 228 (276)
-+.+|+=+.+..+..|-..+.++++|++..++.+..|-. ++++++.-+-..+++-|+|=+ ...+
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAA 1212 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 255666555777889999999999999987665544443 344444434467888888876 3445
Q ss_pred CcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 229 SKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 229 ~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
...-..+.++.+++|+.. ..-++|+-+++.+...
T Consensus 1213 ksspmmeTi~~ci~~iD~----~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDI----SVLEELIPRLTELVRG 1246 (1702)
T ss_pred cCCcHHHHHHHHHHhhhH----HHHHHHHHHHHHHHhc
Confidence 667778888888888655 3456666666666543
No 46
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.43 E-value=4.3 Score=34.35 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=40.4
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCc---c------chHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHP---K------SVQSHRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~---~------~~~~~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
+.....++....|...+..+..++...+ . ..+.....+..++.|+|.++|+-|-+.+..+
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 3444466666777777777777766655 1 1356778888899999999999999998555
No 47
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.61 E-value=1.7 Score=43.75 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=108.4
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhh-cCCchhHHHHHHHHHHHhhhcCCccCCChhhH
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK-AEGTMYRDELLSKVIDICSQNNYQYITNFEWY 92 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~-~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~ 92 (276)
++...+..|=.+.|..+...-+..+..+...+|...+..+++.+... ..+.++-.+.+..|...+. +......-+
T Consensus 320 ~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~s----k~~s~~~~~ 395 (757)
T COG5096 320 DKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLAS----KAESSVNDC 395 (757)
T ss_pred HHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhh----hhhhhHHHH
Confidence 45566666777788899999999998888889988888888888765 1222444555555555544 332222335
Q ss_pred HHHHHHHHH---hcCCcchHHH-----HHHHH---HHHHHh----hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHH
Q psy16364 93 MTVLVELTR---MEGTRHGALV-----AAQMM---DVAIRV----SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFD 157 (276)
Q Consensus 93 v~~ll~ll~---~~~~~~~~~i-----~~~l~---~vi~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~ 157 (276)
+..++.+++ ..|.+...+. |..+. .++... +.+....+-+....++ .... + +.....
T Consensus 396 I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~---~~~~-~----P~~k~~ 467 (757)
T COG5096 396 ISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLE---LQSR-E----PRAKSV 467 (757)
T ss_pred HHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhh---cccc-C----cHHHHH
Confidence 667777776 4444433332 21111 223222 2332233333344443 1010 1 223333
Q ss_pred hhhccccchhhhccccCCCch------------------HHHHHHHHHHHHhhhCccchHH----H-HHHHHHHhc-CCC
Q psy16364 158 EYSDRSSKIFNIKFSSRMPNH------------------MKYLGLLAMSKILKTHPKSVQS----H-RDLIMQCLD-DKD 213 (276)
Q Consensus 158 ~~~~~~~~~ilGef~~~~~~n------------------~ryl~L~~l~~l~~~~~~~~~~----~-~~~i~~~l~-~~D 213 (276)
. ....|+|++|+|.+....- ++|--+..-.|+....++...+ . ++....|.+ ..+
T Consensus 468 ~-~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~ 546 (757)
T COG5096 468 T-DKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLV 546 (757)
T ss_pred H-hhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCC
Confidence 3 0112459999997654321 2333344444555444433322 2 234444554 466
Q ss_pred HHHHHHHHHHHHhcCCcch
Q psy16364 214 ESIRLRALDLLYGMVSKKT 232 (276)
Q Consensus 214 ~~iq~ralell~~l~~~~n 232 (276)
.++|.||.=|- .+.+.++
T Consensus 547 ~DlRDra~my~-~~lst~~ 564 (757)
T COG5096 547 PDLRDRARMYS-RLLSTPL 564 (757)
T ss_pred hhHHHHHHHHH-HHhcCCC
Confidence 78999998333 5554333
No 48
>KOG0212|consensus
Probab=92.08 E-value=5.5 Score=38.62 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=58.0
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccchHHH----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchH---HHHHH
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSH----RDLIMQCLDDKDESIRLRALDLLYGMVSKKTL---MEIVK 238 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~----~~~i~~~l~~~D~~iq~ralell~~l~~~~n~---~~iv~ 238 (276)
.++..|+......+|.-.|.-+.-+....|+-+-.| -.+++..|.|++.++--++++++..+|+.++- ...+.
T Consensus 339 ~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~ 418 (675)
T KOG0212|consen 339 EVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLL 418 (675)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 567777777777788888888888888888766555 45566677899999999999999999987655 44444
Q ss_pred HHHH
Q psy16364 239 KLMV 242 (276)
Q Consensus 239 ~l~~ 242 (276)
.|++
T Consensus 419 sLL~ 422 (675)
T KOG0212|consen 419 SLLE 422 (675)
T ss_pred HHHH
Confidence 4443
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.06 E-value=0.34 Score=35.95 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=30.4
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
++.++..++-++.|+.|+|..||-.|.+-++.++.
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK 56 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999874
No 50
>KOG0212|consensus
Probab=91.85 E-value=13 Score=36.11 Aligned_cols=236 Identities=21% Similarity=0.282 Sum_probs=126.9
Q ss_pred hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CC----cHHHHHHHHHHhhhhcCCchhH--HHHHHHHH-HHhhhc
Q psy16364 11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KK----TLMEIVKKLMVHMDKAEGTMYR--DELLSKVI-DICSQN 81 (276)
Q Consensus 11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~----n~~~iv~~L~~~L~~~~~~~~r--~~li~~I~-~~~~~~ 81 (276)
+++...+-++.|++|+|.-||--|.+-++.++. +. .+.+|...|.+....++. +.| .|+..+.+ .+..+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRLikdIVte- 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ-NVRGGAELLDRLIKDIVTE- 158 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHhccc-
Confidence 577888889999999999999999999999874 33 344555555554443332 111 13333333 11111
Q ss_pred CCccCCChhhHHHHHHHHHHh----cCCc----------------------chHHHHHHHHHHHH-HhhhhHHHHHHHHH
Q psy16364 82 NYQYITNFEWYMTVLVELTRM----EGTR----------------------HGALVAAQMMDVAI-RVSAVRAFAVAQMS 134 (276)
Q Consensus 82 ~y~~~~~~~W~v~~ll~ll~~----~~~~----------------------~~~~i~~~l~~vi~-~~~~~~~~~~~~~~ 134 (276)
.++.+-...++.+++. .+.. .-+++.+.+...+. ..+++|.-+-..+.
T Consensus 159 -----~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 159 -----SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred -----cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 0112222233333322 1110 01233333333332 23344433333444
Q ss_pred HhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch----HHHHHHHHHHhc
Q psy16364 135 SLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV----QSHRDLIMQCLD 210 (276)
Q Consensus 135 ~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~----~~~~~~i~~~l~ 210 (276)
..+..++. .+.+ + . ..+ .+.++|--+.+.++-++-.++.-+-.+++..+..+ ++....++.|+.
T Consensus 234 ~fL~eI~s---~P~s-~-d-~~~------~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 234 EFLAEIRS---SPSS-M-D-YDD------MINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHhc---Cccc-c-C-ccc------chhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 44443321 0000 0 0 000 12556655556666667777777777888776433 445567788998
Q ss_pred CCCHH-HHHHHH---HHHHhcCCcchHH------HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 211 DKDES-IRLRAL---DLLYGMVSKKTLM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 211 ~~D~~-iq~ral---ell~~l~~~~n~~------~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+.+.. ++--|- +++.++++..-.+ .|++-|.+|+.... .+-|.....=|..+-.+
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHK 366 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhh
Confidence 87773 544443 3445666655544 88888888887654 47777777777666544
No 51
>KOG2213|consensus
Probab=91.31 E-value=12 Score=34.70 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=50.9
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhc
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKA 61 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~ 61 (276)
|.++..|++..+-++.=++|.+|.|.+||+.|+.=+=-.|..++...+.+.|.+.|.++
T Consensus 50 ~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~ 108 (460)
T KOG2213|consen 50 RFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKA 108 (460)
T ss_pred HHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHH
Confidence 45678899999999999999999999999999988888888888888888888777654
No 52
>KOG0213|consensus
Probab=91.18 E-value=14 Score=37.17 Aligned_cols=205 Identities=12% Similarity=0.130 Sum_probs=108.6
Q ss_pred HhhhcCCChhHHhhHHHHHHhhcCC-------CcHHHHHHHHHHhhhhcCC--chhHHHHHHHHHHHhhhcCCccCCChh
Q psy16364 20 MQCLDDKDESIRLRALDLLYGMVSK-------KTLMEIVKKLMVHMDKAEG--TMYRDELLSKVIDICSQNNYQYITNFE 90 (276)
Q Consensus 20 ~~~L~d~D~sIr~~aL~Ll~~l~~~-------~n~~~iv~~L~~~L~~~~~--~~~r~~li~~I~~~~~~~~y~~~~~~~ 90 (276)
.+-|...++.|.-..|.-+.+++|- .+++.++|.|.-.|+.-.. .+--.+++.+|+.... .|++.-+
T Consensus 847 yEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp----E~v~aRE 922 (1172)
T KOG0213|consen 847 YEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP----EYVSARE 922 (1172)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc----ccCCHHH
Confidence 4568889999999999998888763 5788999999988875321 0111235666665555 5788889
Q ss_pred hHHHHHHHHHHhcCCcchHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364 91 WYMTVLVELTRMEGTRHGALVAAQM---MDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF 167 (276)
Q Consensus 91 W~v~~ll~ll~~~~~~~~~~i~~~l---~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i 167 (276)
|.-+ .+.|+..... +.+++-..- ...+++.-+-+. -+..++.+-.. ...-.+.| ..+++.|
T Consensus 923 WMRI-cfeLlelLka-hkK~iRRaa~nTfG~IakaIGPqd----VLatLlnnLkv--------qeRq~Rvc--TtvaIaI 986 (1172)
T KOG0213|consen 923 WMRI-CFELLELLKA-HKKEIRRAAVNTFGYIAKAIGPQD----VLATLLNNLKV--------QERQNRVC--TTVAIAI 986 (1172)
T ss_pred HHHH-HHHHHHHHHH-HHHHHHHHHHhhhhHHHHhcCHHH----HHHHHHhcchH--------HHHHhchh--hhhhhhh
Confidence 9853 3334333211 112211000 001111100000 00111111000 00011111 2334566
Q ss_pred hhccccCC-------------CchHHHHHHHHHHHHhhhCccch----HHHHHHHHHHhcCCCHHHHHHHHHHHHhc---
Q psy16364 168 NIKFSSRM-------------PNHMKYLGLLAMSKILKTHPKSV----QSHRDLIMQCLDDKDESIRLRALDLLYGM--- 227 (276)
Q Consensus 168 lGef~~~~-------------~~n~ryl~L~~l~~l~~~~~~~~----~~~~~~i~~~l~~~D~~iq~ralell~~l--- 227 (276)
+||++... +-|..-=.|.+|..|...-.+.- --....+.+.|-|.|..=||-|..++--|
T Consensus 987 VaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 987 VAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred hhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 66664321 22333334666666666544333 33356677788899999999999997444
Q ss_pred CCcchHHHHHHHHHHHh
Q psy16364 228 VSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 228 ~~~~n~~~iv~~l~~~l 244 (276)
+-..-.++..-+|++++
T Consensus 1067 ~~g~g~eda~iHLLN~i 1083 (1172)
T KOG0213|consen 1067 VPGTGCEDALIHLLNLI 1083 (1172)
T ss_pred CCCcCcHHHHHHHHHHh
Confidence 33445566677777776
No 53
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.01 E-value=11 Score=33.61 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=52.5
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHH--hhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLY--GMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 80 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~--~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~ 80 (276)
-....|..++.++|+.||..|+.-+- .+.+++.+.+.++-+.+.+.. ++...|...++.|.++...
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 34455679999999999999998865 556888899988999988844 4558888888888887764
No 54
>KOG0166|consensus
Probab=90.71 E-value=7.8 Score=37.34 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=82.9
Q ss_pred HHHHHhhhcCCChhHHhhHHHHHHhhcCCCc--------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh--cCCcc
Q psy16364 16 RDLIMQCLDDKDESIRLRALDLLYGMVSKKT--------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ--NNYQY 85 (276)
Q Consensus 16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n--------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~--~~y~~ 85 (276)
.+..+..+...|+.-+..+..-+..+.+.+. ...+||.|+..|...+....+-+..-.+..+++. ..++-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5566777888888889999888888765432 2347899999998766557777766666666542 12222
Q ss_pred CCChhhHHHHHHHHHHhcCCcchHHHHHHHHH----HHHHhhhhHHHHHH--HHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMD----VAIRVSAVRAFAVA--QMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~----vi~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
+.++.- +..+++++.-+ ...+.++-.. ++...|..|++... .+..++.-.+. . ..-..++.+.
T Consensus 148 vv~aga-vp~fi~Ll~s~----~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~----~--~~~~~lRn~t 216 (514)
T KOG0166|consen 148 VVDAGA-VPIFIQLLSSP----SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK----S--DKLSMLRNAT 216 (514)
T ss_pred cccCCc-hHHHHHHhcCC----cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc----c--cchHHHHHHH
Confidence 222221 22344544432 2455555443 33445666666443 22233322111 0 0124678888
Q ss_pred hccccchhhhccccCCCc
Q psy16364 160 SDRSSKIFNIKFSSRMPN 177 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~ 177 (276)
|.+..++..+.+
T Consensus 217 ------W~LsNlcrgk~P 228 (514)
T KOG0166|consen 217 ------WTLSNLCRGKNP 228 (514)
T ss_pred ------HHHHHHHcCCCC
Confidence 999888766643
No 55
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.44 E-value=13 Score=33.67 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=31.0
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
.++++|...|.++|+.....+...+|.|+-+|+.
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~ 85 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVS 85 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999997
No 56
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.35 E-value=0.54 Score=29.11 Aligned_cols=39 Identities=33% Similarity=0.518 Sum_probs=32.3
Q ss_pred HHHHHhhhCccch--HHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 186 AMSKILKTHPKSV--QSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 186 ~l~~l~~~~~~~~--~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
++..++..+|... +..+..|...|.|+++++|.-|+|++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4557778888765 46789999999999999999999974
No 57
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.12 E-value=21 Score=35.33 Aligned_cols=224 Identities=15% Similarity=0.154 Sum_probs=116.7
Q ss_pred HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-CcHH--HHHHHHHHhhhhcCCchhHH---HHHHHHHHHhhhcCCc-
Q psy16364 12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLM--EIVKKLMVHMDKAEGTMYRD---ELLSKVIDICSQNNYQ- 84 (276)
Q Consensus 12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n~~--~iv~~L~~~L~~~~~~~~r~---~li~~I~~~~~~~~y~- 84 (276)
+...+..|+..|+++.+.+|.+|+++.-.++.- +++. ....+|=..|...-+++|.+ .++.+|+.+.+.-.++
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 356688899999999999999999998877531 2221 22233333333333333332 2444444443332332
Q ss_pred cCCChhhHHHHHHHHHH---------------h----cCCcchHHHH----HHHHHHHHH-hhhhHHHHHHHHHHhhcCC
Q psy16364 85 YITNFEWYMTVLVELTR---------------M----EGTRHGALVA----AQMMDVAIR-VSAVRAFAVAQMSSLLASP 140 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~---------------~----~~~~~~~~i~----~~l~~vi~~-~~~~~~~~~~~~~~ll~~~ 140 (276)
.-||..=....+.-+++ . ++.+.+..-| -.+++.+.. ..++|..|++.+.-+-+.+
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 11222222222222221 1 2234444333 445566543 3456666665544332222
Q ss_pred CCCCCCCCchhhhhhHHhh------------hccccchhhhccccCC-------------CchHHHHHHHHHHHHhhhCc
Q psy16364 141 SPPLSQPSSRMAEMMFDEY------------SDRSSKIFNIKFSSRM-------------PNHMKYLGLLAMSKILKTHP 195 (276)
Q Consensus 141 ~~~~~~~~~~~~~~L~~~~------------~~~~~~~ilGef~~~~-------------~~n~ryl~L~~l~~l~~~~~ 195 (276)
+. +++|.... -.++++.|.|||+... +.|..-=.|.++..+.+.-.
T Consensus 762 ----GP-----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 762 ----GP-----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred ----CH-----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 10 22332221 1345778888886322 12333334566666655433
Q ss_pred c----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHh
Q psy16364 196 K----SVQSHRDLIMQCLDDKDESIRLRALDLLYGM---VSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 196 ~----~~~~~~~~i~~~l~~~D~~iq~ralell~~l---~~~~n~~~iv~~l~~~l 244 (276)
. .+--.-..+.+.|.|.|..=||-|..++--+ |...-.++..=+|++-|
T Consensus 833 ~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNll 888 (975)
T COG5181 833 QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLL 888 (975)
T ss_pred HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh
Confidence 3 3334456677788899999999999987333 34445555555666555
No 58
>KOG1242|consensus
Probab=89.94 E-value=20 Score=34.94 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHH---HhcC-CcchHHHHHHHHHHHhhhc--C-CchHHHHHHHHHHHHhcc
Q psy16364 197 SVQSHRDLIMQCLDDKDESIRLRALDLL---YGMV-SKKTLMEIVKKLMVHMDKA--E-GTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 197 ~~~~~~~~i~~~l~~~D~~iq~ralell---~~l~-~~~n~~~iv~~l~~~l~~~--~-~~~~~~~l~~~i~~~~~~ 266 (276)
.+.-....+..-|.+++.+++|.+.... +.++ ++..+.+..++|++-|... + .++-|......++.+-|+
T Consensus 369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 3444555566788899999999988776 5666 8899999999999999763 2 258888888877777665
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.37 E-value=4.2 Score=28.53 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q psy16364 200 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKV 260 (276)
Q Consensus 200 ~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i 260 (276)
+..+.+...++|+|..+|+.|..-+-.+- -...++.|.+.+...++...|...+..+
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 44666778889999999999999996552 2445666666666655434466655543
No 60
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.17 E-value=18 Score=33.14 Aligned_cols=211 Identities=14% Similarity=0.212 Sum_probs=113.3
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--c-----H-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--T-----L-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n-----~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
+....++.+|..=|...|+.+..+...+...+ + + .+++..|++.....+- . .-.+.|+.-|.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di-a---l~~g~mlRec~ 151 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI-A---LNCGDMLRECI 151 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT-H---HHHHHHHHHHT
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc-c---chHHHHHHHHH
Confidence 45666788888889999998888888876431 1 1 2222223332222221 0 11222332232
Q ss_pred hcC----CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHH--------HHHHHhhcCCCCCCCCC
Q psy16364 80 QNN----YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAV--------AQMSSLLASPSPPLSQP 147 (276)
Q Consensus 80 ~~~----y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~ 147 (276)
+.+ |-.-.+..|- +.+....+.-++..+....+.+++.+++++-.+-. ..+..+++..+.
T Consensus 152 k~e~l~~~iL~~~~f~~---ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY----- 223 (335)
T PF08569_consen 152 KHESLAKIILYSECFWK---FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY----- 223 (335)
T ss_dssp TSHHHHHHHHTSGGGGG---HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH-----
T ss_pred hhHHHHHHHhCcHHHHH---HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe-----
Confidence 100 1112344454 34444444445567778888999988876533211 222233333211
Q ss_pred CchhhhhhHHhhhccccchhhhccccCCCch---HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 148 SSRMAEMMFDEYSDRSSKIFNIKFSSRMPNH---MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 148 ~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n---~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
=+-+++. -.+||++....+. .||++ -+++...++..|+|+.-.||--|....
T Consensus 224 -----vtkrqsl------kLL~ellldr~n~~vm~~yi~--------------~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 224 -----VTKRQSL------KLLGELLLDRSNFNVMTRYIS--------------SPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp -----HHHHHHH------HHHHHHHHSGGGHHHHHHHTT---------------HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred -----EeehhhH------HHHHHHHHchhHHHHHHHHHC--------------CHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 1234454 7788887666652 24444 356778899999999999999999997
Q ss_pred -HhcCCcchHHHHHH-------HHHHHhhh----c-CCchHHHH---HHHHHH
Q psy16364 225 -YGMVSKKTLMEIVK-------KLMVHMDK----A-EGTMYRDE---LLSKVI 261 (276)
Q Consensus 225 -~~l~~~~n~~~iv~-------~l~~~l~~----~-~~~~~~~~---l~~~i~ 261 (276)
.-.+|++.-.+|++ .|+.||.. . +|+.|.+| ++..|.
T Consensus 279 KvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~ 331 (335)
T PF08569_consen 279 KVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIE 331 (335)
T ss_dssp HHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHH
Confidence 34467766666665 45666644 2 55677777 555554
No 61
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.07 E-value=11 Score=31.29 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=73.7
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
..++|+|.+.|+++.-++|..+|..|++++.-+... -|-...+|.|+.-... .....|.....-...+.+ +|.
T Consensus 3 s~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~e----K~~ 77 (187)
T PF12830_consen 3 SALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS-PNPSIRSRAYQLLKELHE----KHE 77 (187)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHH----HhH
Confidence 357899999999999999999999999999877665 3556677877754333 333555433333334444 332
Q ss_pred C-ChhhHH---HHHHHHHH-hcCCcc------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcC
Q psy16364 87 T-NFEWYM---TVLVELTR-MEGTRH------GALVAAQMMDVAIRVSAVRAFAVAQMSSLLAS 139 (276)
Q Consensus 87 ~-~~~W~v---~~ll~ll~-~~~~~~------~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~ 139 (276)
. -..-+. ..-.++-. +.++.. .......+.+++......|......+...+..
T Consensus 78 s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 78 SLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDF 141 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 1 000111 11111111 112111 34455677777775556666667777766654
No 62
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.97 E-value=8.8 Score=31.15 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=51.3
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-------cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI 77 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-------n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~ 77 (276)
..++.+..+|..+|+++++.-|-.++.|+...+... +....+..+++.|.+.++...+...+..+..+
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998763 34556777888888776655444444333333
No 63
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.57 E-value=16 Score=31.97 Aligned_cols=106 Identities=8% Similarity=0.124 Sum_probs=65.6
Q ss_pred hccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCcchHHH
Q psy16364 160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD--DKDESIRLRALDLLYGMVSKKTLME 235 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~--~~D~~iq~ralell~~l~~~~n~~~ 235 (276)
.+.||.-++|.+++..++..|--++.++..++.... ..++.|...+.+-.. ..|.++|+-++.+|..|+-.++...
T Consensus 51 r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~ 130 (254)
T PF04826_consen 51 RDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH 130 (254)
T ss_pred HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh
Confidence 445677888888888888888778887777655432 334445555555322 3578899999999988865554343
Q ss_pred H----HHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 236 I----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 236 i----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+ +..++.-|...+ ...|.....-+..+++.
T Consensus 131 ~l~~~i~~ll~LL~~G~-~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 131 MLANYIPDLLSLLSSGS-EKTKVQVLKVLVNLSEN 164 (254)
T ss_pred hHHhhHHHHHHHHHcCC-hHHHHHHHHHHHHhccC
Confidence 3 334443333333 36666666655555554
No 64
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=88.11 E-value=2.3 Score=33.73 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q psy16364 199 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKV 260 (276)
Q Consensus 199 ~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i 260 (276)
++..+.+..+|.++|.+||+-|++-++.--++ .+.+--+.|.+= .++..||+||+.-.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-~l~pY~d~L~~L---ldd~~frdeL~~f~ 73 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP-YLTPYKDNLENL---LDDKTFRDELTTFN 73 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHhHHHHHHHH---cCcchHHHHHHhhc
Confidence 35577788899999999999999999654332 333322222221 23457787777644
No 65
>KOG2171|consensus
Probab=87.42 E-value=41 Score=35.34 Aligned_cols=236 Identities=13% Similarity=0.132 Sum_probs=119.9
Q ss_pred HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhH
Q psy16364 13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWY 92 (276)
Q Consensus 13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~ 92 (276)
+.+...++.-|-.+|..+|+.|=+.+..+..+.+ +.+.|..++..+.+++.|.-..--..+++.+ -|.-. +..-.
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~-~w~~l-~~e~~ 77 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTK-HWSRL-SAEVQ 77 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HhhcC-CHHHH
Confidence 3456677788888999999999999998877666 6677777777776656665433222333332 12212 23322
Q ss_pred HHHHHHHHHhcCCcchHHH-------------------HHHHHHHHHH-----hhhhHHHHHHHHHHhhcCCCCCCCCCC
Q psy16364 93 MTVLVELTRMEGTRHGALV-------------------AAQMMDVAIR-----VSAVRAFAVAQMSSLLASPSPPLSQPS 148 (276)
Q Consensus 93 v~~ll~ll~~~~~~~~~~i-------------------~~~l~~vi~~-----~~~~~~~~~~~~~~ll~~~~~~~~~~~ 148 (276)
...--+++...-......+ |..+.+.+.. .++.|..+..-++.+ +.+..++..
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~---~~~~~~~~~ 154 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSL---PETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhh---hhhhccccc
Confidence 2222222222111111122 2222222221 123343333222211 112222111
Q ss_pred chhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc----------cchHHHHHHHHHHhcCCCHHHHH
Q psy16364 149 SRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP----------KSVQSHRDLIMQCLDDKDESIRL 218 (276)
Q Consensus 149 ~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~----------~~~~~~~~~i~~~l~~~D~~iq~ 218 (276)
..+.... .++.+=+...+.++|..++.++..++...+ ..+|......-+++++.|..--+
T Consensus 155 ----~~~~~l~------~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 155 ----PHLDDLL------RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred ----hhHHHHH------HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 1111111 112222233444589888888888776652 23444445555566778887778
Q ss_pred HHHHHHHhc--CCcchHHHHHHHHHHHhhh-c----CCchHHHHHHHHHHHHhcc
Q psy16364 219 RALDLLYGM--VSKKTLMEIVKKLMVHMDK-A----EGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 219 ralell~~l--~~~~n~~~iv~~l~~~l~~-~----~~~~~~~~l~~~i~~~~~~ 266 (276)
-++|.+-.+ ..+.=+++.+..++++-.. + -+...|.--+.-|+.++|.
T Consensus 225 ~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 888887444 3455666666666665432 1 1236666666666655553
No 66
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.39 E-value=5.6 Score=31.66 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=29.5
Q ss_pred ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
.+.-..+-...|.+-|.++++-+..+||.|+-.++.
T Consensus 31 ~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vk 66 (144)
T cd03568 31 DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAE 66 (144)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344445667778888999999999999999999985
No 67
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=86.63 E-value=1.6 Score=30.78 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHhhh-cCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhh
Q psy16364 16 RDLIMQCL-DDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60 (276)
Q Consensus 16 ~~~I~~~L-~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~ 60 (276)
++.+++.| +|+|+.+|..|+..+..+-++ ..++.|...+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----~~~~~L~~~l~d 42 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP----EAIPALIELLKD 42 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----HHHHHHHHHHTS
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----hHHHHHHHHHcC
Confidence 35677878 899999999999999965433 566777776643
No 68
>KOG2259|consensus
Probab=86.33 E-value=38 Score=33.79 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=64.7
Q ss_pred hhhhccccCCCc---hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hHHHHHHHHH
Q psy16364 166 IFNIKFSSRMPN---HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLM 241 (276)
Q Consensus 166 ~ilGef~~~~~~---n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~-n~~~iv~~l~ 241 (276)
..+|-|.+..++ ..|--+..++.+|+...|++..+-.+.+++-++|.+..+|-+|+-.+..+.+.- --++.++.++
T Consensus 373 GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il 452 (823)
T KOG2259|consen 373 GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQIL 452 (823)
T ss_pred cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHH
Confidence 346777666665 356677889999999999999999999999999999999999999986664431 1233444445
Q ss_pred HHhhhcCCchHHHHH
Q psy16364 242 VHMDKAEGTMYRDEL 256 (276)
Q Consensus 242 ~~l~~~~~~~~~~~l 256 (276)
.-|.-+. .+.|+.+
T Consensus 453 ~~L~D~s-~dvRe~l 466 (823)
T KOG2259|consen 453 ESLEDRS-VDVREAL 466 (823)
T ss_pred HHHHhcC-HHHHHHH
Confidence 5554444 2555543
No 69
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.33 E-value=3.4 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=28.8
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 45 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~ 45 (276)
...+.+.++|+|+|+.++..|+..+..++...
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 66788999999999999999999999998654
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.31 E-value=36 Score=33.51 Aligned_cols=202 Identities=14% Similarity=0.189 Sum_probs=101.1
Q ss_pred ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
++..+|++..+.++.+-.-|.|+-.+|-..|...++++..+. -+...|..|..+|+.... +.
T Consensus 254 ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv--------------~~ 319 (898)
T COG5240 254 LLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRV--------------VL 319 (898)
T ss_pred HHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchH--------------HH
Confidence 456778888888888888888887888888888887765432 244455555444432211 11
Q ss_pred hcCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHh
Q psy16364 80 QNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDE 158 (276)
Q Consensus 80 ~~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~ 158 (276)
+|. -.-.+-++....+..+ ......+-+++.. +.++..||+. .++.... .+..-..
T Consensus 320 ----rFs-----A~Riln~lam~~P~kv-~vcN~evEsLIsd~Nr~IstyAIT---tLLKTGt----------~e~idrL 376 (898)
T COG5240 320 ----RFS-----AMRILNQLAMKYPQKV-SVCNKEVESLISDENRTISTYAIT---TLLKTGT----------EETIDRL 376 (898)
T ss_pred ----HHH-----HHHHHHHHHhhCCcee-eecChhHHHHhhcccccchHHHHH---HHHHcCc----------hhhHHHH
Confidence 111 0112222222222111 0011122222221 1123444443 3333321 2333333
Q ss_pred hhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCC--cchHHH
Q psy16364 159 YSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVS--KKTLME 235 (276)
Q Consensus 159 ~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell~~l~~--~~n~~~ 235 (276)
+ ..+-.|.+...++-|.++.+++-.|...+|.--..+...+.+.|. ...-+-++-+.|-+..+.. ++.-+.
T Consensus 377 v------~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr 450 (898)
T COG5240 377 V------NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER 450 (898)
T ss_pred H------HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH
Confidence 4 566777788788888888887777777666544444444444332 3444555555555444432 334444
Q ss_pred HHHHHHHHhhhcC
Q psy16364 236 IVKKLMVHMDKAE 248 (276)
Q Consensus 236 iv~~l~~~l~~~~ 248 (276)
++..|-.|++-|+
T Consensus 451 aLe~LC~fIEDce 463 (898)
T COG5240 451 ALEVLCTFIEDCE 463 (898)
T ss_pred HHHHHHHHHhhcc
Confidence 5555555555444
No 71
>KOG2025|consensus
Probab=86.07 E-value=40 Score=33.89 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=41.5
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC------cHHHHHHHHHHhhhhcCCchhHHHHH
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK------TLMEIVKKLMVHMDKAEGTMYRDELL 71 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~------n~~~iv~~L~~~L~~~~~~~~r~~li 71 (276)
++|+...-++++..+.+|-.||.+.+.++--+.+.. -+..+..+|...+....+ ..|.+.+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep-~VRiqAv 147 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP-NVRIQAV 147 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc-hHHHHHH
Confidence 578888999999999999999999999998887621 123344444444444443 4554433
No 72
>KOG1967|consensus
Probab=85.60 E-value=21 Score=36.75 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhCc-----cchHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy16364 179 MKYLGLLAMSKILKTHP-----KSVQSHRDLIMQCLDDKDESIRLRALDL 223 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~-----~~~~~~~~~i~~~l~~~D~~iq~ralel 223 (276)
.|..+|.+|..+..+-| ..+++....+..+|+|+---+|+-|.+-
T Consensus 969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 57778888888877544 3456666677778999888888888753
No 73
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.16 E-value=5.1 Score=30.45 Aligned_cols=63 Identities=13% Similarity=0.281 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 198 VQSHRDLIMQCLDD-KDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 198 ~~~~~~~i~~~l~~-~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
++.....+.+.-++ .-...|++|+|++ |+-++++-.+..|++|+.-.. +++.++.||.++|=.
T Consensus 15 i~Eak~il~~~~~~~eL~y~~~~al~y~~kFakldpe~a~e~veEL~~i~~------~~e~~avkIadI~P~ 80 (114)
T COG1460 15 ISEAKKILSKVEREEELTYEQREALEYAEKFAKLDPEKARELVEELLSIVK------MSEKIAVKIADIMPR 80 (114)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc------ccHHHHHHHHHhCCC
Confidence 44444544444334 3347899999998 777899999999999987632 567888888887754
No 74
>KOG4224|consensus
Probab=84.61 E-value=15 Score=33.92 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHhhhcCCChhHHhhHHHHHHhhcC-CCcHHHH-----HHHHHHhhhhcCCchhHHHHHHHHHHHhhh--cCCccCCChh
Q psy16364 19 IMQCLDDKDESIRLRALDLLYGMVS-KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ--NNYQYITNFE 90 (276)
Q Consensus 19 I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n~~~i-----v~~L~~~L~~~~~~~~r~~li~~I~~~~~~--~~y~~~~~~~ 90 (276)
+.++=+.+|..+++-|...+.+|.. .+|-+.+ +|.|+..++..+. +.|....+.|..++-. .--..+..-|
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~-dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL-DVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh-hHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 3445567899999999999999986 3565554 4677777776654 5565555555544310 0013344556
Q ss_pred hHHHHHHHHHHhcCC
Q psy16364 91 WYMTVLVELTRMEGT 105 (276)
Q Consensus 91 W~v~~ll~ll~~~~~ 105 (276)
-++..+++++..+.+
T Consensus 251 ~lv~~Lv~Lmd~~s~ 265 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSD 265 (550)
T ss_pred chHHHHHHHHhCCCh
Confidence 778888888776543
No 75
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.55 E-value=1.7 Score=33.68 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.7
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
...+|....+..+.+.+.|+++++-|+.++|.+|-.+|...+
T Consensus 29 t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 29 TRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 345677778889999999999999999999999999997655
No 76
>KOG1824|consensus
Probab=84.24 E-value=57 Score=34.02 Aligned_cols=93 Identities=15% Similarity=0.255 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHhhhCccchHHHHHHHHHHh----cCCCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHhhhcCC
Q psy16364 177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCL----DDKDESIRLRALDLLY---GMVSKKTLMEIVKKLMVHMDKAEG 249 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l----~~~D~~iq~ralell~---~l~~~~n~~~iv~~l~~~l~~~~~ 249 (276)
...+...|+.+.-+.....+.++..-..++.|+ .++-..||+||.=.+- .-++..-...++++|++.|.....
T Consensus 147 sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q 226 (1233)
T KOG1824|consen 147 SAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ 226 (1233)
T ss_pred hhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc
Confidence 457888899898888888887776555555555 5788899999987763 336788889999999999988765
Q ss_pred chHHHHHHHHHHHHhccCCc
Q psy16364 250 TMYRDELLSKVIDICSQNNY 269 (276)
Q Consensus 250 ~~~~~~l~~~i~~~~~~~~y 269 (276)
..--+..+.-+..+|....|
T Consensus 227 ~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 227 MSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 55566666777777766544
No 77
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=83.73 E-value=33 Score=31.85 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCchHHHHHHHHHHHHhhhCccchHH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHH
Q psy16364 175 MPNHMKYLGLLAMSKILKTHPKSVQS--HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLME 235 (276)
Q Consensus 175 ~~~n~ryl~L~~l~~l~~~~~~~~~~--~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~ 235 (276)
.+++.|.+.+.++..++-.+|+.+.. -...+.+.+-|+..++..-.+..+..+.|.++.+.
T Consensus 120 ~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 120 EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 67778888888888888888876532 24556666665555566666666656666555443
No 78
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.10 E-value=11 Score=29.86 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.3
Q ss_pred ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
...|....+-...|.+-|+++++-+...||.|+-+++.
T Consensus 30 n~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vk 67 (139)
T cd03567 30 NKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMK 67 (139)
T ss_pred HcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555556667778888999999999999999999984
No 79
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=82.49 E-value=6.9 Score=29.80 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=29.6
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 45 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~ 45 (276)
|++-+=-++.+++.|.|+++.|+..|++++++.|..+
T Consensus 3 ~~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 3 PDFEDWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 3333334566889999999999999999999998765
No 80
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.85 E-value=56 Score=32.27 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.5
Q ss_pred cccChh---hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 5 LKTHPK---SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 5 ~~~~P~---~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
.+..|+ +|+...-++++.++.+|-.||.+.+.++--+.+
T Consensus 79 ~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 79 MPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred CCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 345665 788999999999999999999999999987764
No 81
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.79 E-value=46 Score=31.19 Aligned_cols=205 Identities=19% Similarity=0.259 Sum_probs=109.7
Q ss_pred HHHHhhhcCCCh---hHHhhHHHHHHhhcCCCc-HHHHHHHHHHhhhhcC----CchhHHHHHHHHHHHhhhcCCcc-CC
Q psy16364 17 DLIMQCLDDKDE---SIRLRALDLLYGMVSKKT-LMEIVKKLMVHMDKAE----GTMYRDELLSKVIDICSQNNYQY-IT 87 (276)
Q Consensus 17 ~~I~~~L~d~D~---sIr~~aL~Ll~~l~~~~n-~~~iv~~L~~~L~~~~----~~~~r~~li~~I~~~~~~~~y~~-~~ 87 (276)
+.++..|.|.+. .-..+.|+.+.++|.... ++.+++.+++.+.... ..+|-..++..+..+.+...-.. ..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 456778888776 788999999999997655 6778888888876532 34666677777776655432233 45
Q ss_pred ChhhHHH--HHHHHHHhc----CCcch--HHHHHHHHHH---HHHh--hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364 88 NFEWYMT--VLVELTRME----GTRHG--ALVAAQMMDV---AIRV--SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEM 154 (276)
Q Consensus 88 ~~~W~v~--~ll~ll~~~----~~~~~--~~i~~~l~~v---i~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 154 (276)
+..||.. .+-+++... +...+ ..+.+.+-++ +.+. ++.++..++.+..+|-.......
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~--------- 152 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSP--------- 152 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCC---------
Confidence 7789876 555555442 11111 2333333333 3222 23444455555555431110000
Q ss_pred hHHhhhccccchhhhccccCC-CchHHHHHHHHHHHHhhhCccch----HHHH-HHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364 155 MFDEYSDRSSKIFNIKFSSRM-PNHMKYLGLLAMSKILKTHPKSV----QSHR-DLIMQCLDDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 155 L~~~~~~~~~~~ilGef~~~~-~~n~ryl~L~~l~~l~~~~~~~~----~~~~-~~i~~~l~~~D~~iq~ralell~~l~ 228 (276)
++-..... +.+.+++.+.+ .-+...+++.. .+.. ..+--++...|...|.-++..+..++
T Consensus 153 -------------~~~~~~~~~~~~~~~~~l~~-~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 153 -------------FQPSSSTISEQQSRLVILFS-AILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLV 218 (415)
T ss_pred -------------CCccccccccccccHHHHHH-HHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 00000000 12344444322 22333333222 1222 22333456677888888888888888
Q ss_pred Cc----chHHHHHHHHHHHh
Q psy16364 229 SK----KTLMEIVKKLMVHM 244 (276)
Q Consensus 229 ~~----~n~~~iv~~l~~~l 244 (276)
|+ +.+..+++.+...+
T Consensus 219 NK~~~~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 219 NKWPDDDDLDEFLDSLLQSI 238 (415)
T ss_pred cCCCChhhHHHHHHHHHhhh
Confidence 87 22555555555555
No 82
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=81.71 E-value=6.5 Score=31.20 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=43.1
Q ss_pred cChhhHH---HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364 7 THPKSVQ---SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVI 75 (276)
Q Consensus 7 ~~P~~v~---~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~ 75 (276)
++|..+. +..+.+.++|.++|+.|.+.||+.++.-=++ .+..--..|.+- .++..||+|+..-..
T Consensus 7 ~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-~l~pY~d~L~~L---ldd~~frdeL~~f~~ 74 (141)
T PF07539_consen 7 KNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDP-YLTPYKDNLENL---LDDKTFRDELTTFNL 74 (141)
T ss_pred CCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHhHHHHHHHH---cCcchHHHHHHhhcc
Confidence 5677663 6777889999999999999999999975432 222222222221 244588888775443
No 83
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.59 E-value=14 Score=29.29 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=28.2
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+.--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vk 70 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVK 70 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 33344566677788899999999999999999985
No 84
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.43 E-value=3.6 Score=31.70 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=31.6
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
+=+|+|....+..-+.+. --+.+..|++.+.++|.++|..|+--+..+
T Consensus 66 ~Dig~~vr~~p~gr~ii~--------------~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 66 HDIGEFVRHYPNGRNIIE--------------KLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-GGGHHHHH--------------HHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHChhHHHHHH--------------hcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 667888766544333221 123567789999999999999999877544
No 85
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=80.59 E-value=51 Score=30.95 Aligned_cols=200 Identities=12% Similarity=0.108 Sum_probs=100.0
Q ss_pred HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-CcH-----HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTL-----MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n~-----~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
+.++..++.+++.+|+.=|...-+++..+..+ .+. ..+...+.+++.......--.+++.-..++.. .|.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~----gf~ 207 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN----GFA 207 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT----T--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh----ccC
Confidence 48888999999999999999999998887653 122 23444444444433221111223322223332 333
Q ss_pred CCh-hhHHHHHHHH-HHhcCC----cchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364 87 TNF-EWYMTVLVEL-TRMEGT----RHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS 160 (276)
Q Consensus 87 ~~~-~W~v~~ll~l-l~~~~~----~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~ 160 (276)
.|- +=....+.+. +.+-.. .....+...+...+.+.|++....+..+...-...+ +..+++.-
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~--------s~Kev~FL--- 276 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN--------SQKEVLFL--- 276 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS---------HHHHHHHH---
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC--------chhHHHHH---
Confidence 221 1122222222 111111 113555666666666666666655555555443211 11233210
Q ss_pred ccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH-----HhcCCcchHHH
Q psy16364 161 DRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL-----YGMVSKKTLME 235 (276)
Q Consensus 161 ~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell-----~~l~~~~n~~~ 235 (276)
..+++-+...++ ..+ .......-..+-.|++++...+-.||+.+. ..+. .+|.+.
T Consensus 277 -----~el~~il~~~~~-~~f-------------~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li-~~~~~~ 336 (409)
T PF01603_consen 277 -----NELEEILEVLPP-EEF-------------QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI-SQNSRV 336 (409)
T ss_dssp -----HHHHHHHTT--H-HHH-------------HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH-HCTHHH
T ss_pred -----HHHHHHHHhcCH-HHH-------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH-HhChHH
Confidence 112221111111 111 122334445567799999999999999875 1111 377788
Q ss_pred HHHHHHHHhhhc
Q psy16364 236 IVKKLMVHMDKA 247 (276)
Q Consensus 236 iv~~l~~~l~~~ 247 (276)
+++-+.+.|..+
T Consensus 337 i~p~i~~~L~~~ 348 (409)
T PF01603_consen 337 ILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHHHSST
T ss_pred HHHHHHHHHHHH
Confidence 888888888663
No 86
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.81 E-value=14 Score=26.95 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=58.8
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhCc---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q psy16364 170 KFSSRMPNHMKYLGLLAMSKILKTHP---KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMD 245 (276)
Q Consensus 170 ef~~~~~~n~ryl~L~~l~~l~~~~~---~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~ 245 (276)
+++.+...|+|--||..|.+++.... ...+.....++..|+|+|.-|=-.|..-+..|++..- +.+++.|+++..
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-~~vl~~L~~~y~ 87 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-DEVLPILLDEYA 87 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-HHHHHHHHHHHh
Confidence 34566778899999999999998776 3345667788889999999999999999988887653 367777776643
No 87
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=78.90 E-value=21 Score=31.83 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=73.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--------Cc-------chHHHHH
Q psy16364 173 SRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV--------SK-------KTLMEIV 237 (276)
Q Consensus 173 ~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~--------~~-------~n~~~iv 237 (276)
.+.+..+|-.|+.++...+-.+.+...++...+..+++..+.++|-.|+.-++.+. +. .....+.
T Consensus 37 ~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~ 116 (298)
T PF12719_consen 37 QSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLL 116 (298)
T ss_pred cCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHH
Confidence 55677899999999999888899999999999999998789999999998875551 11 2345677
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 238 KKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 238 ~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
+-+.+++...+ ++.+.-.+..++.+.-.+
T Consensus 117 ~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 117 KILTKFLDSEN-PELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHhcC
Confidence 77777777765 488888888888765444
No 88
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.90 E-value=4 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 203 DLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 203 ~~i~~~l~~~D~~iq~ralell~~l 227 (276)
+.++++++|++.++|+-|.+-+-.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5678899999999999999887554
No 89
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=77.85 E-value=3.9 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=25.5
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMV 42 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~ 42 (276)
.-++.++++|.++|+.|+..|+-.+..|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35788999999999999999999888765
No 90
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.83 E-value=15 Score=26.76 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.6
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
..+.++.-|+||.+-||..||..+-.++.++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC
Confidence 45667788999999999999999999997665
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=77.33 E-value=4.7 Score=25.84 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=25.8
Q ss_pred ccccChhhHH----HhHHHHHhhhcCCChhHHhhHHHHHHh
Q psy16364 4 ILKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYG 40 (276)
Q Consensus 4 i~~~~P~~v~----~~~~~I~~~L~d~D~sIr~~aL~Ll~~ 40 (276)
+....|+.++ +-.+.+..+|+|++..||..|..-|-.
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4455666665 445556677889999999999776543
No 92
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.33 E-value=1.9 Score=33.14 Aligned_cols=39 Identities=15% Similarity=0.435 Sum_probs=29.6
Q ss_pred ccccChhh---HH--HhHHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364 4 ILKTHPKS---VQ--SHRDLIMQCLDDKDESIRLRALDLLYGMV 42 (276)
Q Consensus 4 i~~~~P~~---v~--~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~ 42 (276)
+++.+|+- ++ ...++|+++++++|+.||..||--+..+.
T Consensus 71 ~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 71 FVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45666754 33 56788999999999999999999888765
No 93
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=74.74 E-value=65 Score=29.02 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhCc-----cchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 179 MKYLGLLAMSKILKTHP-----KSVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~-----~~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
+..-+|.+..-|+..-| .....+...+..+|++.|.++|.-|.|-+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEai 252 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAI 252 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44445655555554433 23456788899999999999999999988
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=74.53 E-value=11 Score=24.05 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 198 VQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 198 ~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
.++....+..+|+|++.++|..|..-|
T Consensus 26 ~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 26 LPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345556667788999999999987655
No 95
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.00 E-value=30 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=31.4
Q ss_pred ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+..|....+-...|.+-|.++++.+...||.|+-.++.
T Consensus 34 ~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 34 NSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44455666777788889999999999999999999884
No 96
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.54 E-value=35 Score=26.51 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=28.2
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+.-..+-...|.+-|.++++.+...||.|+-.++.
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vk 66 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVK 66 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33444566677788899999999999999999985
No 97
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=73.11 E-value=6.2 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=24.5
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMV 42 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~ 42 (276)
-++.++++|.++|+.+++.|+..+..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3777889999999999999999998875
No 98
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.71 E-value=8.9 Score=31.80 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=42.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 173 SRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 173 ~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
-+.+...|+.++..+..+.+..-.--.+...+++....|++..+|.+|.+++..+.++
T Consensus 18 ~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 18 LSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred hCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3456678999988777776643332235678888888899999999999998666443
No 99
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=71.36 E-value=86 Score=30.78 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=19.9
Q ss_pred HHHHHHH-HHHHHHhhhhHHHHHHHHHHhhcCC
Q psy16364 109 ALVAAQM-MDVAIRVSAVRAFAVAQMSSLLASP 140 (276)
Q Consensus 109 ~~i~~~l-~~vi~~~~~~~~~~~~~~~~ll~~~ 140 (276)
+.++.++ -......|++++.|.+++.++.++.
T Consensus 39 K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDe 71 (556)
T PF05918_consen 39 KRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDE 71 (556)
T ss_dssp HHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc
Confidence 4444443 3444456888888888888888764
No 100
>KOG0166|consensus
Probab=71.31 E-value=1e+02 Score=29.87 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=46.0
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHH------HHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLME------IVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 80 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~------iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~ 80 (276)
-.+.++.||.+++..|+..|+=-+-.++-.+ .++. +++.|+..+.....-.+.+.++-.+..+|..
T Consensus 153 avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 153 AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 3566889999999999999999998888653 3443 4667777766554333444555566677753
No 101
>KOG1240|consensus
Probab=68.62 E-value=1.8e+02 Score=31.44 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=67.4
Q ss_pred hhccccCCCchHHHHHHHHHHHHhh-hCccchHHH-HHHHHHHhcCCCHHHHHHHHHHHHhcC-----CcchHHHHHHHH
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILK-THPKSVQSH-RDLIMQCLDDKDESIRLRALDLLYGMV-----SKKTLMEIVKKL 240 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~-~~~~~~~~~-~~~i~~~l~~~D~~iq~ralell~~l~-----~~~n~~~iv~~l 240 (276)
+-.|++.+|-.+|-.-.+.+.-++- ..+..+.++ ...+.+-|.|+-+-+--+|+.-+..|+ .+.-+.+|++..
T Consensus 622 LiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 622 LITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDV 701 (1431)
T ss_pred HHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhh
Confidence 4567777777777544333322211 123334444 677777888988888888888875554 566777888888
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 241 MVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 241 ~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+++|-..+. -.|...+.-|..++++
T Consensus 702 ~PlL~hPN~-WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 702 LPLLCHPNL-WIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hhheeCchH-HHHHHHHHHHHHHHhh
Confidence 888888775 8888888888887766
No 102
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=67.50 E-value=31 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=45.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhh-Cc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 172 SSRMPNHMKYLGLLAMSKILKT-HP----KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 172 ~~~~~~n~ryl~L~~l~~l~~~-~~----~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
+...+.+-++++......|+.. .+ .++++...-+-..|++.|.++..++++.|..|+.
T Consensus 47 L~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 47 LRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3456678999999999999888 33 2356666667779999999999999999988843
No 103
>KOG2759|consensus
Probab=67.39 E-value=82 Score=29.65 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=51.9
Q ss_pred cCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHH
Q psy16364 103 EGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYL 182 (276)
Q Consensus 103 ~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl 182 (276)
++.+....-|.+=.+-+.. -+-+..+.+..+++..+ -|.+|..|+ +=+|+|....+..-..+
T Consensus 344 SP~Hk~e~FW~eNa~rlne---nnyellkiL~~lLe~s~---------Dp~iL~VAc------~DIge~Vr~yP~gk~vv 405 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNE---NNYELLKILIKLLETSN---------DPIILCVAC------HDIGEYVRHYPEGKAVV 405 (442)
T ss_pred CccccccchHHHhHHHHhh---ccHHHHHHHHHHHhcCC---------CCceeehhh------hhHHHHHHhCchHhHHH
Confidence 4444445556443333321 12235566667776432 134565566 66777755444322222
Q ss_pred HHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 183 GLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 183 ~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
. + -+-++.+++.++++|+++|.-|+--...+
T Consensus 406 ~--------k------~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 406 E--------K------YGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred H--------H------hchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 1 1 12357788999999999999988665443
No 104
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.00 E-value=58 Score=25.30 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=30.8
Q ss_pred ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+..|+...+-...|.+-|.++++.+..+||.|+-.++.
T Consensus 29 ~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vk 66 (133)
T smart00288 29 NSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVK 66 (133)
T ss_pred hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455555667778888999999999999999999985
No 105
>KOG1241|consensus
Probab=66.32 E-value=1.5e+02 Score=30.17 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=39.7
Q ss_pred hhhccccCCCchHHHHHHHHHHHHhhh---C-ccchHH--HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364 167 FNIKFSSRMPNHMKYLGLLAMSKILKT---H-PKSVQS--HRDLIMQCLDDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 167 ilGef~~~~~~n~ryl~L~~l~~l~~~---~-~~~~~~--~~~~i~~~l~~~D~~iq~ralell~~l~ 228 (276)
+-|---....++.|.-++.+|..-... + ...-++ ..+.+.+..+++|.+||..|+.=+.++.
T Consensus 178 v~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm 245 (859)
T KOG1241|consen 178 VQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIM 245 (859)
T ss_pred HhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHH
Confidence 345444455668899998888753322 1 111111 2445556778999999999999887764
No 106
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.08 E-value=1e+02 Score=27.28 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=28.7
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
-..+-++.+++|.++.++.+++.++..++++-+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 457778999999999999999999999987544
No 107
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=63.88 E-value=2.6e+02 Score=31.71 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=49.3
Q ss_pred HHhhhcCCChhHHhhHHHHHHhhcCC-------CcH---HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 19 IMQCLDDKDESIRLRALDLLYGMVSK-------KTL---MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 19 I~~~L~d~D~sIr~~aL~Ll~~l~~~-------~n~---~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
+..+=.+++..|+.-|++-|-.++.+ .|+ +++.+-|...+......+.|+-++.-+.++..... ... -
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-~nI-k 1219 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-NNV-K 1219 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhh-h
Confidence 45555577788999999987766542 121 45666676666666555788777777765544210 122 2
Q ss_pred hhhHHHHHHHHHHhc
Q psy16364 89 FEWYMTVLVELTRME 103 (276)
Q Consensus 89 ~~W~v~~ll~ll~~~ 103 (276)
.-|- +++.++...
T Consensus 1220 SGWk--tIF~VLs~a 1232 (1780)
T PLN03076 1220 SGWK--SMFMVFTTA 1232 (1780)
T ss_pred cCcH--HHHHHHHHH
Confidence 3686 456666643
No 108
>KOG2213|consensus
Probab=63.25 E-value=33 Score=31.98 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q psy16364 180 KYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 246 (276)
Q Consensus 180 ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~ 246 (276)
+-++-..+-+..+.+|+......+.-+++-.|.|+.||+.|..=|..+|..+++..+.+.|.+-|.+
T Consensus 41 k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk 107 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNK 107 (460)
T ss_pred HHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHH
Confidence 3444444445666677777777777788999999999999999998999998888777776665544
No 109
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=62.63 E-value=1.2e+02 Score=33.39 Aligned_cols=117 Identities=12% Similarity=0.180 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHH
Q psy16364 108 GALVAAQMMDVAIRVS-AVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLA 186 (276)
Q Consensus 108 ~~~i~~~l~~vi~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~ 186 (276)
+.++.+.+.+++...| .++..++..+-+++.+.. ..++. ..+.+.+... ..+..-.|++
T Consensus 190 ~~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~---------h~~v~----------~~L~~ll~~~-~~L~~~iLd~ 249 (1426)
T PF14631_consen 190 SEELTDKLFEVLSIAPVELQKEIISSLPEILDDSQ---------HDEVV----------EELLELLQEN-PELTVPILDA 249 (1426)
T ss_dssp HHHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG---------HHHHH----------HHHHHHHHH--STTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchh---------HHHHH----------HHHHHHHhcC-CchhhhHHHH
Confidence 4667777777776554 344444444444443210 01111 2223322221 2233344565
Q ss_pred HHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q psy16364 187 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMD 245 (276)
Q Consensus 187 l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~ 245 (276)
|..|- .+++...+.++.++++|.+.+.+-==--+.++..-+++.+..++|.+|-+.|.
T Consensus 250 Ls~L~-Ls~~~l~~vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~ 307 (1426)
T PF14631_consen 250 LSNLN-LSPELLEEVREKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLD 307 (1426)
T ss_dssp HHHS----HHHHHHHHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHcc
Confidence 55542 35666777888888888776665433334455555777888888888887764
No 110
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=62.49 E-value=47 Score=26.99 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHhcC
Q psy16364 213 DESIRLRALDLLYGMV 228 (276)
Q Consensus 213 D~~iq~ralell~~l~ 228 (276)
|.+|.|||+..|-.|+
T Consensus 73 d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 73 DASILQRSLAILESIV 88 (160)
T ss_pred cchHHHHHHHHHHHHH
Confidence 6666666666665554
No 111
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=62.09 E-value=63 Score=26.29 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=26.0
Q ss_pred HHHhHHHHHhhh-cCCChhHHhhHHHHHHhhcCC
Q psy16364 12 VQSHRDLIMQCL-DDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 12 v~~~~~~I~~~L-~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
+.+-...|.+.| +|.-|||..+++.|+.-++.+
T Consensus 74 I~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek 107 (180)
T PHA02855 74 INDIKSQIIESLNNDNRPSVKLAIISLISMIAEK 107 (180)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 344556666666 799999999999999988764
No 112
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=61.59 E-value=16 Score=27.76 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 212 KDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 212 ~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
.-..+++|+++|+ |+=++++..+.++.+|+.. . .+++..+.+|..+|-.+
T Consensus 29 els~~~~ktl~y~~kFsk~~~e~a~elve~L~~~-----~-~l~e~~a~~I~nL~P~~ 80 (112)
T PRK14981 29 ELSYELRRTLDYLNRFSKLDPEDAEELVEELLEL-----E-KMKEKTAVKIADILPET 80 (112)
T ss_pred chhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----c-CCCHHHHHHHHhcCCCC
Confidence 4456899999998 4445777888888888654 1 35666677777776543
No 113
>KOG0946|consensus
Probab=60.22 E-value=40 Score=34.26 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=28.8
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
+++.-++..+++.|..||+.|+.|+.++...+.
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 678888999999999999999999999976544
No 114
>KOG0915|consensus
Probab=60.21 E-value=2.6e+02 Score=30.99 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=92.1
Q ss_pred cccccChhhHHHhHHHHHhhhcCC----C-----------hhHHhhHHHHHHh-hcCCCcHHHHHHHHHHhhhhcCCchh
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDK----D-----------ESIRLRALDLLYG-MVSKKTLMEIVKKLMVHMDKAEGTMY 66 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~----D-----------~sIr~~aL~Ll~~-l~~~~n~~~iv~~L~~~L~~~~~~~~ 66 (276)
++.+..|..+..|.+.++-||-+- . ..+-..|+|=+-+ .++.++..+.++++++++.. ..
T Consensus 1157 dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~----~v 1232 (1702)
T KOG0915|consen 1157 DLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI----SV 1232 (1702)
T ss_pred HHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH----HH
Confidence 345666666666666665555432 2 2223333333332 23345666777777777654 34
Q ss_pred HHHHHHHHHHHhhhcCCccCC--ChhhHH-HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCC
Q psy16364 67 RDELLSKVIDICSQNNYQYIT--NFEWYM-TVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPP 143 (276)
Q Consensus 67 r~~li~~I~~~~~~~~y~~~~--~~~W~v-~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~ 143 (276)
-.+++.++++.... .-..++ ...-++ ....++.....+++|+-+.-.+.-+--|+++++.....+|..++...+
T Consensus 1233 Leelip~l~el~R~-sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss-- 1309 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRG-SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS-- 1309 (1702)
T ss_pred HHHHHHHHHHHHhc-cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC--
Confidence 45677777765431 001111 111222 222222222234444444444433334667777666677777664321
Q ss_pred CCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHH
Q psy16364 144 LSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQ 207 (276)
Q Consensus 144 ~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~ 207 (276)
+ +.+...+... ++.|+...+. .+-++..+...+++..++....|.+.|+.
T Consensus 1310 ---~-dq~qKLie~~---------l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILP 1359 (1702)
T KOG0915|consen 1310 ---P-DQMQKLIETL---------LADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILP 1359 (1702)
T ss_pred ---h-HHHHHHHHHH---------HHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHH
Confidence 1 1123344433 3444333333 22456666667788888888888888776
No 115
>KOG0413|consensus
Probab=59.41 E-value=7.8 Score=40.03 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=34.8
Q ss_pred cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
.|.-.++.|++.|-.||.||++-||+.|+-++..+....-
T Consensus 999 ~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 999 SYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred HHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 4445678999999999999999999999999999987653
No 116
>KOG1241|consensus
Probab=56.71 E-value=1.6e+02 Score=29.96 Aligned_cols=195 Identities=10% Similarity=0.154 Sum_probs=110.4
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC---C-CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS---K-KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ 84 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~-~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~ 84 (276)
++.=++.+..++.-|..+-|.....|-.++-+++- | +-|..+++.|+.-.....+...|+..+..|--+|+ .
T Consensus 85 ~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice----~ 160 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE----D 160 (859)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc----c
Confidence 33334556678888998899999999999888864 3 33566666666554444444566667777776675 2
Q ss_pred cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364 85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV---SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD 161 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~ 161 (276)
.++.-++..-. .+...++.=..+. ..+|--+.+++...++-.+...+.+.. ...+-
T Consensus 161 --i~pevl~~~sN------------~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~e--rn~iM----- 219 (859)
T KOG1241|consen 161 --IDPEVLEQQSN------------DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEME--RNYIM----- 219 (859)
T ss_pred --CCHHHHHHHHh------------HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhh--hceee-----
Confidence 22332222222 2222222222111 123333444444444322211111100 00111
Q ss_pred cccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHH-----HHHHhcCCCHHHHHHHHHHHHhcCCcch
Q psy16364 162 RSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDL-----IMQCLDDKDESIRLRALDLLYGMVSKKT 232 (276)
Q Consensus 162 ~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~-----i~~~l~~~D~~iq~ralell~~l~~~~n 232 (276)
-+..|=-...|..++--++.+|.|++..+-+..+.+... -+.-+++.+.++.--|.|+=..+|+.++
T Consensus 220 ----qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi 291 (859)
T KOG1241|consen 220 ----QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI 291 (859)
T ss_pred ----eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 122444455667788888999999998887666665332 3335679999999999999877776554
No 117
>KOG4535|consensus
Probab=56.69 E-value=16 Score=35.04 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=30.4
Q ss_pred hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
++.++...|...+.++|+.|+-.+|.++-.++....
T Consensus 147 ~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~ 182 (728)
T KOG4535|consen 147 LLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHA 182 (728)
T ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCC
Confidence 455788888899999999999999999999886543
No 118
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=56.41 E-value=44 Score=25.81 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=35.7
Q ss_pred HHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364 187 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 231 (276)
Q Consensus 187 l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~ 231 (276)
+.++...+++...+..+.+..-|++.+.-++.+||-++--+|...
T Consensus 25 ia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 25 IAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 445556666777788888899999999999999999997666654
No 119
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=54.52 E-value=61 Score=23.19 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHh-cCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q psy16364 215 SIRLRALDLLYG-MVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC 264 (276)
Q Consensus 215 ~iq~ralell~~-l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~ 264 (276)
++|+.|-+.+-. =.+.-++..++.++.+.-...-|.+.|.++..+|....
T Consensus 35 ~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~Ir~~L 85 (86)
T PF10163_consen 35 EVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRIRAFL 85 (86)
T ss_dssp HHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 677777777733 14567999999999999888888899999999997653
No 120
>KOG0414|consensus
Probab=54.51 E-value=3.1e+02 Score=29.54 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHhhhCc---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 177 NHMKYLGLLAMSKILKTHP---KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~---~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
.-.|+=.|..+.++.+.+. +...+.....+.+|.|...=+|+.|..++..+..+
T Consensus 373 a~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 373 AYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred HHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhc
Confidence 3466667777888777653 45566677778899999999999999999776543
No 121
>KOG2199|consensus
Probab=51.89 E-value=86 Score=29.30 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=34.3
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+...|+.-++.+..|.+-|++.|+-|...||.|+-+++.
T Consensus 36 v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~ 74 (462)
T KOG2199|consen 36 VGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVA 74 (462)
T ss_pred hcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 455677777889999999999999999999999999974
No 122
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.96 E-value=1.7e+02 Score=26.90 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364 200 SHRDLIMQCLDDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 200 ~~~~~i~~~l~~~D~~iq~ralell~~l~ 228 (276)
+.++.|++.++++|.+++--|+.-++.+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 34678999999999999999988775543
No 123
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=50.40 E-value=1.4e+02 Score=24.30 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHhhhCccchH---HH--HHHHHHHhcCCCHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHhhhc
Q psy16364 176 PNHMKYLGLLAMSKILKTHPKSVQ---SH--RDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLMEIVKKLMVHMDKA 247 (276)
Q Consensus 176 ~~n~ryl~L~~l~~l~~~~~~~~~---~~--~~~i~~~l~~~D~~iq~ralell~~l~~---~~n~~~iv~~l~~~l~~~ 247 (276)
+.++--.+|..|-+++...+...+ +. .+.++.+|+..|.+||+.|+-|+-+|.- ++.-+ ++.++|..
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~----~i~~~l~~- 147 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRK----EIAETLSQ- 147 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHH----HHHHHHHH-
Confidence 456666677777788876654322 21 4667889999999999999999977642 23333 33333332
Q ss_pred CCchHHHHHHHHH
Q psy16364 248 EGTMYRDELLSKV 260 (276)
Q Consensus 248 ~~~~~~~~l~~~i 260 (276)
.++|.-+...|
T Consensus 148 --k~~R~~I~~~i 158 (160)
T PF11841_consen 148 --KQIRQVILKNI 158 (160)
T ss_pred --HHHHHHHHHcc
Confidence 35666665544
No 124
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=50.22 E-value=41 Score=27.97 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=30.9
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH--HHHHHHHH
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL--MEIVKKLM 55 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~--~~iv~~L~ 55 (276)
+-+.-+.+.|+.+|+.|..++|..+..|+..... ..+||.+.
T Consensus 80 qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyr 123 (183)
T PF10274_consen 80 QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYR 123 (183)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4456677899999999999999999999754432 33444433
No 125
>KOG1240|consensus
Probab=49.88 E-value=3.7e+02 Score=29.16 Aligned_cols=219 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred hHHHHHhhhcC-CChhHHhhHHHHHHhhcC----CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh-hcCCccCC-
Q psy16364 15 HRDLIMQCLDD-KDESIRLRALDLLYGMVS----KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS-QNNYQYIT- 87 (276)
Q Consensus 15 ~~~~I~~~L~d-~D~sIr~~aL~Ll~~l~~----~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~-~~~y~~~~- 87 (276)
+++.+..|+.. .-..-+..||+|+..+.. ..-...++|.++..+..++. ..|...+..+..+.. .. .+++
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a-~Vra~Al~Tlt~~L~~Vr--~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEA-DVRATALETLTELLALVR--DIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchH-HHHHHHHHHHHHHHhhcc--CCCcc
Confidence 45556666654 445578889999888753 23466788888887776665 677666666554421 11 2222
Q ss_pred ChhhHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHhhhhHHHHHHH--HHHhhcCCCC--CCCCCCchh-hhhhHH
Q psy16364 88 NFEWYMTVLVELTRMEGT-----RHGALVAAQMMDVAIRVSAVRAFAVAQ--MSSLLASPSP--PLSQPSSRM-AEMMFD 157 (276)
Q Consensus 88 ~~~W~v~~ll~ll~~~~~-----~~~~~i~~~l~~vi~~~~~~~~~~~~~--~~~ll~~~~~--~~~~~~~~~-~~~L~~ 157 (276)
++.-|++-++=-+..... .+.--.++.+-+++......... +.. ....+.+++. ......++. .++...
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-TQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-HHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 444444443333322111 11111122222222211111100 111 0111222211 111111111 223222
Q ss_pred hhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchH--HHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCcch
Q psy16364 158 EYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLLY---GMVSKKT 232 (276)
Q Consensus 158 ~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~--~~~~~i~~~l~~~D~~iq~ralell~---~l~~~~n 232 (276)
+. -...+++...+++.|---|..+..|+..+..... -....++.+|+|.|.-+|--=.|-+. ..+-...
T Consensus 579 V~------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 579 VE------QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HH------HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 32 4566777777888888778888888877654332 24566777999999988877677665 3445666
Q ss_pred HHHHHHHHHHH
Q psy16364 233 LMEIVKKLMVH 243 (276)
Q Consensus 233 ~~~iv~~l~~~ 243 (276)
+.+.+--|+.+
T Consensus 653 ~seyllPLl~Q 663 (1431)
T KOG1240|consen 653 VSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHH
Confidence 66666555554
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=49.02 E-value=52 Score=28.89 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=22.1
Q ss_pred hhhccccCCCchHHHHHHHHHHHHhhhCc
Q psy16364 167 FNIKFSSRMPNHMKYLGLLAMSKILKTHP 195 (276)
Q Consensus 167 ilGef~~~~~~n~ryl~L~~l~~l~~~~~ 195 (276)
-+|+|+.+.++..|-=|+..|..++..-|
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp 31 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLP 31 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCC
Confidence 47888888888888888888887776654
No 127
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.57 E-value=1.3e+02 Score=23.23 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy16364 189 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLY 225 (276)
Q Consensus 189 ~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~ 225 (276)
.+++..+.........|..-|+++++.+|.+|+.++-
T Consensus 26 d~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd 62 (133)
T cd03561 26 DLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLE 62 (133)
T ss_pred HHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3334344334444555556666777777777777763
No 128
>KOG1248|consensus
Probab=47.44 E-value=3.9e+02 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q psy16364 195 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEGTMYRDELLSKVID 262 (276)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~---~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~ 262 (276)
...+.+..+.+.-||.+...+|++-|..++-.++.. .-+..-+++||+-+..=.. +.+..+..|+-.
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~-d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH-DHKIKVRKKVRL 891 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 466788888899999999999999999998554432 3344444555555433221 334444444433
No 129
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=46.51 E-value=96 Score=24.99 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=29.1
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhC-ccchHHH----HHHHHHHhcCCC-HHHHHHHHHHH
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTH-PKSVQSH----RDLIMQCLDDKD-ESIRLRALDLL 224 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~-~~~~~~~----~~~i~~~l~~~D-~~iq~ralell 224 (276)
+..++.+.+...|+.|+..+..++..+ ++...++ ...++..|+.+| ..+..-|+..+
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITL 92 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445556666666777776666666654 3333222 233444454433 24444444444
No 130
>KOG0211|consensus
Probab=46.07 E-value=3.5e+02 Score=27.78 Aligned_cols=88 Identities=13% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhCcc--chHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHhhhcCC--ch
Q psy16364 179 MKYLGLLAMSKILKTHPK--SVQSHRDLIMQCLDDKDESIRLRALDLLYGM---VSKKTLMEIVKKLMVHMDKAEG--TM 251 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~--~~~~~~~~i~~~l~~~D~~iq~ralell~~l---~~~~n~~~iv~~l~~~l~~~~~--~~ 251 (276)
.|...+.++..++..... ..+.....+.+...|++..||-.+...+..+ .+.+-.+..|..++..|.+..+ -.
T Consensus 573 ~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchh
Confidence 345556666677766543 2334567777778899999999999887544 5677778888888888877422 36
Q ss_pred HHHHHHHHHHHHhcc
Q psy16364 252 YRDELLSKVIDICSQ 266 (276)
Q Consensus 252 ~~~~l~~~i~~~~~~ 266 (276)
|+.+.+...+.++.+
T Consensus 653 ~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 653 YRAILAFGSIELSRL 667 (759)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777665
No 131
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=45.84 E-value=34 Score=25.97 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hHHHHH
Q psy16364 202 RDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIV 237 (276)
Q Consensus 202 ~~~i~~~l~~~D~~iq~ralell~~l~~~~-n~~~iv 237 (276)
.+.++..|.|++.++...|+++|+..|..+ .++.++
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 455677899999999999999998888665 444444
No 132
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=45.25 E-value=53 Score=21.28 Aligned_cols=43 Identities=14% Similarity=0.341 Sum_probs=31.2
Q ss_pred CccccccChhhHHHhHHHHHhhhcCC----ChhHHhhHHHHHHhhcC
Q psy16364 1 MSKILKTHPKSVQSHRDLIMQCLDDK----DESIRLRALDLLYGMVS 43 (276)
Q Consensus 1 l~~i~~~~P~~v~~~~~~I~~~L~d~----D~sIr~~aL~Ll~~l~~ 43 (276)
+.++..-||+...++-+.+.++|.+. |+.+|.+-+.-+.-+-|
T Consensus 2 la~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRn 48 (52)
T PF08158_consen 2 LAHVAHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLRN 48 (52)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHc
Confidence 35667788999899999999988864 67777766655554444
No 133
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.84 E-value=3.7e+02 Score=27.47 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=50.9
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCc---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHP---KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK 231 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~---~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~ 231 (276)
..+.|=+.+..+-.|+-+|..+.++...+. +-+.+.-..+..||+|+..-+||.|..+...+.-+.
T Consensus 349 ~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 349 GLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 445555555556689999999999998864 445566778889999999999999999987765443
No 134
>KOG2023|consensus
Probab=41.61 E-value=3.9e+02 Score=27.09 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=41.3
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHh----cCCCHHHHHHHHHHHHhc
Q psy16364 170 KFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCL----DDKDESIRLRALDLLYGM 227 (276)
Q Consensus 170 ef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l----~~~D~~iq~ralell~~l 227 (276)
+|..+..+.+|-.++.++-.+.-..+....-|.+.+++.+ +|.|+++|+--+.-+.-+
T Consensus 181 ~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L 242 (885)
T KOG2023|consen 181 QFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL 242 (885)
T ss_pred HHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4556666778888888888888777776666665555533 699999999766655333
No 135
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=41.40 E-value=2.6e+02 Score=24.90 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=21.9
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
-.+.+.+.|.|+|..+|..|...+..+-++
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~ 73 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE 73 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH
Confidence 466677788888888888888776655544
No 136
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=40.20 E-value=27 Score=28.41 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=23.6
Q ss_pred HHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcC
Q psy16364 12 VQSHRDLIMQCLD-DKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 12 v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~ 43 (276)
+.+-...+.+.|. |.-|||+.+++.|+..++.
T Consensus 62 I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~ 94 (167)
T PF11099_consen 62 IDDIKNEVIEILLSDNRPSVKLATISLISIIIE 94 (167)
T ss_dssp HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCceeehHHHHHHHHHH
Confidence 4555666677766 8889999999999998774
No 137
>KOG1293|consensus
Probab=39.17 E-value=4.1e+02 Score=26.63 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=46.7
Q ss_pred ccchhhhccccCCCchHHHHHHHHHHHHhhhCcc-----chHHH-HHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK-----SVQSH-RDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~-----~~~~~-~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
+|+-++-+|....+.|.|.-.+..|-.+.-...+ ...+. ...|..+.+|||..+|--|+.++=.++.
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 4556777788888888888887777766544321 12233 3456667789999999999999966654
No 138
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.76 E-value=38 Score=27.41 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhhhCccc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364 178 HMKYLGLLAMSKILKTHPKS-----VQSHRDLIMQCLDDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~-----~~~~~~~i~~~l~~~D~~iq~ralell~~l~ 228 (276)
...+..+.++-.+++...+. .+.....|..||.+++..+|.-|+|+|..+|
T Consensus 131 ~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34555666666666544321 2345678889999999999999999997765
No 139
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=38.55 E-value=1.9e+02 Score=22.66 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.1
Q ss_pred HhHHHHHhhhc-CCChhHHhhHHHHHHhhcC
Q psy16364 14 SHRDLIMQCLD-DKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 14 ~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~ 43 (276)
+-...|.+-|. ++++-+...||.|+-.++.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vk 68 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVK 68 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 44455555666 5799999999999999984
No 140
>KOG2160|consensus
Probab=38.27 E-value=3.2e+02 Score=25.10 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHHHHhhhCccchHH-----HHHHHHHHhcC--CCHHHHHHHHHHHHhcCCcch-HHHHH-HHHHHHh--
Q psy16364 176 PNHMKYLGLLAMSKILKTHPKSVQS-----HRDLIMQCLDD--KDESIRLRALDLLYGMVSKKT-LMEIV-KKLMVHM-- 244 (276)
Q Consensus 176 ~~n~ryl~L~~l~~l~~~~~~~~~~-----~~~~i~~~l~~--~D~~iq~ralell~~l~~~~n-~~~iv-~~l~~~l-- 244 (276)
++..|--+|-|+..++..++....+ -...+.++|++ .+.-.|+||+.|+..++.... .+.++ ..++++.
T Consensus 180 ~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 180 PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLE 259 (342)
T ss_pred CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Confidence 3345566777777777776532221 14567789988 788999999999966654322 22222 2222222
Q ss_pred --hhcCCchHHHHHHHHHHHHh
Q psy16364 245 --DKAEGTMYRDELLSKVIDIC 264 (276)
Q Consensus 245 --~~~~~~~~~~~l~~~i~~~~ 264 (276)
..+.+.++++..+..++...
T Consensus 260 ~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 260 NLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhhccchhhhHHHHHHHHHHH
Confidence 22334466666666665543
No 141
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=37.68 E-value=2.1e+02 Score=22.90 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.1
Q ss_pred cccChhhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhh
Q psy16364 5 LKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGM 41 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l 41 (276)
+..||+++ +.+++.|. +.+.++|+.|+.++--+
T Consensus 5 Y~~yP~LL----~~L~~iLk~e~s~~iR~E~lr~lGil 38 (160)
T PF11865_consen 5 YLDYPELL----DILLNILKTEQSQSIRREALRVLGIL 38 (160)
T ss_pred HHHhHHHH----HHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 45778884 45555665 45699999999998755
No 142
>KOG0413|consensus
Probab=35.89 E-value=1.1e+02 Score=32.14 Aligned_cols=65 Identities=9% Similarity=0.184 Sum_probs=53.9
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccchH---HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ---SHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~---~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
||+-+.+.+.-.+.|--++.+|.++...+|.+.+ ...-.++..++|.+..++.||.+++...+.+
T Consensus 619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 9999999888889999999999999999998763 2345566678899999999999988665544
No 143
>KOG2160|consensus
Probab=35.23 E-value=1.4e+02 Score=27.37 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHhhhcCCChhHHhhHHHHHHhhcCCCcH--HH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 18 LIMQCLDDKDESIRLRALDLLYGMVSKKTL--ME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 18 ~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~--~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
.++..|+++|.++|.+|..++-..+..++. .. ..++|++.|...++.+.|...+.+|.....
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 345589999999999999999998753221 11 346677777766666777777777776654
No 144
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=35.09 E-value=1.9e+02 Score=21.49 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcC--CCHHHHHHHHHHH---HhcCCcchHHHHHHHHHHHh
Q psy16364 176 PNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDD--KDESIRLRALDLL---YGMVSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 176 ~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~--~D~~iq~ralell---~~l~~~~n~~~iv~~l~~~l 244 (276)
+...|--++.++..+.....+.+...+.+|+.||++ ...++|.-|++-- ..-.+.+++.++++...-.+
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 445666777777788887777788888889999985 4448888888764 34466777777777665544
No 145
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.04 E-value=57 Score=29.60 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=27.1
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
-.+++..+|+.+|..|+..||.++..++.+
T Consensus 27 S~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 27 SSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 457888999999999999999999998875
No 146
>KOG4464|consensus
Probab=34.13 E-value=49 Score=31.16 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q psy16364 195 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 246 (276)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~ 246 (276)
|+.-+..+..+...+..+|.++++-|.|++|.+|.++ |+.+++|.-.
T Consensus 368 PEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes-----V~rmIKYtGy 414 (532)
T KOG4464|consen 368 PEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES-----VNRMIKYTGY 414 (532)
T ss_pred cchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc-----hhhhhhhccc
Confidence 5555667888888999999999999999999998765 4777888643
No 147
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.19 E-value=59 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=19.8
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV 42 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~ 42 (276)
|+..++-...|..-|+++++-+..+||.|+-.++
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lv 65 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCV 65 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 3444445555555566666666666666666665
No 148
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=33.14 E-value=2.1e+02 Score=21.44 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcC--CCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHh
Q psy16364 178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDD--KDESIRLRALDLLY---GMVSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~--~D~~iq~ralell~---~l~~~~n~~~iv~~l~~~l 244 (276)
..|--++.++..|.+...+.+...+.+|..||++ ..+++|.-|++--. ...+.+.+.++++..+-.+
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455666667777776667777888889999985 56678888887653 3345666666666555443
No 149
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.06 E-value=81 Score=31.89 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchH
Q psy16364 179 MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL 233 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~ 233 (276)
.|--.+.++.-+.-.+.--+..+......||.|+|..|..-|--+...++.++|.
T Consensus 987 V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 987 VRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 3334444444444444333455666677899999999999888887777666553
No 150
>KOG4224|consensus
Probab=32.77 E-value=4.2e+02 Score=24.86 Aligned_cols=125 Identities=20% Similarity=0.263 Sum_probs=65.2
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHHH-----HHHHHHhhhhcCCchhHHHHHHHHH---
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEI-----VKKLMVHMDKAEGTMYRDELLSKVI--- 75 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~i-----v~~L~~~L~~~~~~~~r~~li~~I~--- 75 (276)
.+..|.+ ++.++++++|+++-++..|-.-+-.+++.+ ...++ +|.+++.|... +-+.++..+.
T Consensus 246 aqaep~l----v~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~----~~plilasVaCIr 317 (550)
T KOG4224|consen 246 AQAEPKL----VPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP----MGPLILASVACIR 317 (550)
T ss_pred Hhcccch----HHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc----chhHHHHHHHHHh
Confidence 3445555 677888999999999988887777777654 33444 46677666432 2223333322
Q ss_pred HHh--hhcCCccCCChhhHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHh----hhhHHH-HHHHHHHhhcC
Q psy16364 76 DIC--SQNNYQYITNFEWYMTVLVELTRMEGTR-HGALVAAQMMDVAIRV----SAVRAF-AVAQMSSLLAS 139 (276)
Q Consensus 76 ~~~--~~~~y~~~~~~~W~v~~ll~ll~~~~~~-~~~~i~~~l~~vi~~~----~~~~~~-~~~~~~~ll~~ 139 (276)
.+. +-|. ..+.++-++ .-+.++++...+. ..-...+.+.++.... ..++.. ++.++..++-+
T Consensus 318 nisihplNe-~lI~dagfl-~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 318 NISIHPLNE-VLIADAGFL-RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred hcccccCcc-cceecccch-hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence 111 1000 112233332 3478888775432 1222345566666532 123322 55555555544
No 151
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=32.61 E-value=1.2e+02 Score=22.82 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=38.1
Q ss_pred hhhhccccCCCchHHHHHHH----HHHHHhhhC----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy16364 166 IFNIKFSSRMPNHMKYLGLL----AMSKILKTH----PKSVQSHRDLIMQCLDDKDESIRLRALDLLY 225 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~----~l~~l~~~~----~~~~~~~~~~i~~~l~~~D~~iq~ralell~ 225 (276)
.++.+|+...+....|-.|. .+.++...+ ...+.+.+..++.-+...+.+|++|-.||..
T Consensus 7 ~~i~~YLgr~ps~~~y~~Lk~q~~~I~~I~~Fnkd~Fi~LikKNk~~Ff~d~~~s~~eIk~rI~~YFs 74 (108)
T PF12630_consen 7 EIIEEYLGRNPSLEEYHMLKSQVRNIQRIINFNKDIFISLIKKNKKRFFSDIESSDSEIKRRILEYFS 74 (108)
T ss_dssp HHHHHHHTS---HHHHHHHGGGHHHHHHHHHS-HHHHHHHHHHHHHHH-TTSSS-THHHHHHHHHHTT
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 55677777777777776652 233444433 2456677888888888999999999999984
No 152
>KOG3666|consensus
Probab=32.26 E-value=3.5e+02 Score=27.55 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhh---cCCchhHHHHHHHHHHHhhhcCCccC-------C-ChhhHHHHHHHHHHhcCCcchHHHHHHH
Q psy16364 47 LMEIVKKLMVHMDK---AEGTMYRDELLSKVIDICSQNNYQYI-------T-NFEWYMTVLVELTRMEGTRHGALVAAQM 115 (276)
Q Consensus 47 ~~~iv~~L~~~L~~---~~~~~~r~~li~~I~~~~~~~~y~~~-------~-~~~W~v~~ll~ll~~~~~~~~~~i~~~l 115 (276)
++-++.++.+.... ...+.+|.+..+++.++++...=.++ + =-.|+-.+--++.++.-++ ..+-++.+
T Consensus 405 ~E~~l~e~~~~~l~~k~~~wT~~k~e~~~rL~eLaE~F~g~~pl~~~eQn~nlq~Wfre~s~~i~Kl~L~d-~t~Sgr~I 483 (1141)
T KOG3666|consen 405 FEFILKEMFKQMLSEKQTKWTHYKKEGSERLTELAEVFSGVKPLTRVEQNENLQAWFREISKQILKLNLDD-STASGRKI 483 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHcCCCcccccccchhHHHHHHHHHHHHHhhcCCC-chhhHHHH
Confidence 44556666655432 23457888888888888873111111 1 1248877766666654332 24555666
Q ss_pred HHHHHHhhhhH
Q psy16364 116 MDVAIRVSAVR 126 (276)
Q Consensus 116 ~~vi~~~~~~~ 126 (276)
.+++.+.++++
T Consensus 484 ~Qiiqal~~Vq 494 (1141)
T KOG3666|consen 484 VQLIQALEEVQ 494 (1141)
T ss_pred HHHHHHHHHHH
Confidence 66666554443
No 153
>KOG0168|consensus
Probab=31.71 E-value=6.2e+02 Score=26.48 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc--CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH
Q psy16364 51 VKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY--ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF 128 (276)
Q Consensus 51 v~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~--~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~ 128 (276)
+++|+.-|....++.-+.+-+...+++....+=.- ..+..-++.++..|++...+ +++...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------------~DIMl~ 231 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------------FDIMLL 231 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------------HHHHHH
Q ss_pred HHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccch--hhhccccCCCchHHHH-----HHHHHHHHhhhCccchHHH
Q psy16364 129 AVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKI--FNIKFSSRMPNHMKYL-----GLLAMSKILKTHPKSVQSH 201 (276)
Q Consensus 129 ~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--ilGef~~~~~~n~ryl-----~L~~l~~l~~~~~~~~~~~ 201 (276)
|.+++..+++. .|+..-.++ . .+--|+...-. +.|+ .|.||.++.+.+|..+-+-
T Consensus 232 AcRaltyl~ev-----------lP~S~a~vV------~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 232 ACRALTYLCEV-----------LPRSSAIVV------DEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred HHHHHHHHHhh-----------ccchhheee------cccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHhhccHHHHhc
Q ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 202 --RDLIMQCLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 202 --~~~i~~~l~~~D~~iq~ralell~~l~~~------~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
...++.+|+--.+.+||.|+-....+|.+ .-+.+.++-|-+-|...|. .--+....-.+.+++
T Consensus 294 G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~-k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 294 GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK-KPIESVCICLTRIAD 364 (1051)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHH
No 154
>KOG3723|consensus
Probab=31.65 E-value=59 Score=31.90 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=52.2
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC---cHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK---TLMEIVKKLMVHMDKAEGTMYRDELLSKVI 75 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~---n~~~iv~~L~~~L~~~~~~~~r~~li~~I~ 75 (276)
.++.+-|+.+..|.+.+.-+|...||. ...+|.+++.++..+ -....+|.|...+...+-.+.+..+..+|.
T Consensus 188 ~Vye~~P~~i~PhlP~l~~lL~q~~p~-~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia 262 (851)
T KOG3723|consen 188 AVYEKQPQPINPHLPELLALLSQLEPE-QYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIA 262 (851)
T ss_pred HHHhcCCCccCcccHHHHHHhcCCCHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 346788999999999999999988875 456778888887643 456778888888877665455544444443
No 155
>KOG2828|consensus
Probab=31.16 E-value=57 Score=30.28 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q psy16364 215 SIRLRALDLLYGMVSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 215 ~iq~ralell~~l~~~~n~~~iv~~l~~~l 244 (276)
++||||.|++ .+|.++..+.+.++-+.-+
T Consensus 419 s~rqRayElI-~i~~p~dre~L~k~afdr~ 447 (454)
T KOG2828|consen 419 SPRQRAYELI-QICAPPDREALLKAAFDRA 447 (454)
T ss_pred CHHHHHHHHH-HhhCCchHHHHHHHHHHHH
Confidence 8999999999 9999999888877665543
No 156
>KOG2085|consensus
Probab=29.57 E-value=2.6e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-----HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364 201 HRDLIMQCLDDKDESIRLRALDLL-----YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI 263 (276)
Q Consensus 201 ~~~~i~~~l~~~D~~iq~ralell-----~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~ 263 (276)
.-.+|-.|++|++-.+--||+.+. ..++ .+|.+.|++.+.+-|......++...+...++..
T Consensus 342 Lf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li-~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nv 408 (457)
T KOG2085|consen 342 LFRQIARCVSSPHFQVAERALYLWNNEYIRSLI-SQNAEVILPIVFPALYRNSKSHWNQAIHNLILNV 408 (457)
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHH-HhccceeeehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577899999999999999885 1222 4678888888888887765568888888777653
No 157
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=29.04 E-value=2.9e+02 Score=21.73 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q psy16364 204 LIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 204 ~i~~~l~~~D~~iq~ralell 224 (276)
.|..-|+++++-+|.+|++++
T Consensus 45 al~krl~~~n~~vql~AL~LL 65 (142)
T cd03569 45 ALKKRLLSKNPNVQLYALLLL 65 (142)
T ss_pred HHHHHHcCCChHHHHHHHHHH
Confidence 333444455555555555554
No 158
>KOG1087|consensus
Probab=28.93 E-value=1.3e+02 Score=29.01 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=32.7
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH----------HHHHHHHHHhhhhc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL----------MEIVKKLMVHMDKA 61 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~----------~~iv~~L~~~L~~~ 61 (276)
+-.-.|.+-|+++.+-+...||.||-.+++ || +++++++++..+..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvk--NCG~~fh~~Va~k~fL~emVk~~k~~ 93 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVK--NCGYSFHLQVASKEFLNEMVKRPKNK 93 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHhccccC
Confidence 556667788999999999999998888874 44 34555555554443
No 159
>KOG4524|consensus
Probab=28.82 E-value=2.3e+02 Score=29.71 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=27.9
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhc
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV 42 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~ 42 (276)
+++.+-..+...+|.|++..||.+||+++....
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl 831 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGL 831 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcc
Confidence 456677888889999999999999999998643
No 160
>KOG2005|consensus
Probab=28.70 E-value=1.8e+02 Score=29.35 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHhhh-----------cCCchHHHHHHHHHHHHhcc
Q psy16364 199 QSHRDLIMQCLDDKDESIRLRALDLLYGMV-SKKTLMEIVKKLMVHMDK-----------AEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 199 ~~~~~~i~~~l~~~D~~iq~ralell~~l~-~~~n~~~iv~~l~~~l~~-----------~~~~~~~~~l~~~i~~~~~~ 266 (276)
++....+++-++|||+++|+-|+|-+.... ++..-..-|++=++||.. -.+++.|+-++.=|..+|--
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt 126 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMT 126 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHhee
Confidence 445677888999999999999999985543 233333444554555533 12358888888888877754
No 161
>PF14961 BROMI: Broad-minded protein
Probab=27.82 E-value=2.7e+02 Score=30.03 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhCc------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc--hH-HHHHHHHHHHhhh
Q psy16364 181 YLGLLAMSKILKTHP------KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TL-MEIVKKLMVHMDK 246 (276)
Q Consensus 181 yl~L~~l~~l~~~~~------~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~--n~-~~iv~~l~~~l~~ 246 (276)
-+.+.|+..|+...| +.-+..++.+...|.|+|..|..+++.+..++.+.. ++ ++|-.-|+++|..
T Consensus 177 evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYtsL~~~l~~ 251 (1296)
T PF14961_consen 177 EVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYTSLANHLES 251 (1296)
T ss_pred HHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 344444445554443 344667788889999999999999999997776655 44 5678888877733
No 162
>KOG4199|consensus
Probab=27.55 E-value=3.5e+02 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=27.1
Q ss_pred hHHHHHhhhcC-CChhHH---hhHHHHHHhhcCCCcHHHH
Q psy16364 15 HRDLIMQCLDD-KDESIR---LRALDLLYGMVSKKTLMEI 50 (276)
Q Consensus 15 ~~~~I~~~L~d-~D~sIr---~~aL~Ll~~l~~~~n~~~i 50 (276)
-.+.+++|+.| .+.+.| +.++.++-+++-.+.+++.
T Consensus 284 Gl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~ 323 (461)
T KOG4199|consen 284 GLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKST 323 (461)
T ss_pred CHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHH
Confidence 35678889998 777777 6778888888877666653
No 163
>KOG2759|consensus
Probab=27.34 E-value=5.4e+02 Score=24.40 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 17 DLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 17 ~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
+..+..|++.|..+...+-.++..++.-.|+ .-....|...+..+.+..|..-.+.-.-.+...+.|+|+
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~ 193 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA 193 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence 3457789999999999777787777643221 111222223334434445554433333344555677765
No 164
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=27.29 E-value=4.3e+02 Score=24.59 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=27.7
Q ss_pred HHHHhhhcC--CChhHHhhHHHHHHhhcCCC-------cHHHHHHHHHHhhhhc
Q psy16364 17 DLIMQCLDD--KDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKA 61 (276)
Q Consensus 17 ~~I~~~L~d--~D~sIr~~aL~Ll~~l~~~~-------n~~~iv~~L~~~L~~~ 61 (276)
+-++.+|.. +|.++.+.+-=.+..||.-+ |+...+|-|.+.+..-
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~ 255 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR 255 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc
Confidence 445555554 46688888888888998532 3444555555544433
No 165
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=26.39 E-value=5.3e+02 Score=23.99 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHH-------HHHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364 204 LIMQCLDDKDESIRLRALDLLYGMVSKKTLMEI-------VKKLMVHMDKAEGTMYRDELLSKVIDI 263 (276)
Q Consensus 204 ~i~~~l~~~D~~iq~ralell~~l~~~~n~~~i-------v~~l~~~l~~~~~~~~~~~l~~~i~~~ 263 (276)
.+++.|.+++.-||.-|+...=.+++-+..++= ++.+..-|.... +..|.|..=.|..+
T Consensus 289 RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNI 354 (526)
T COG5064 289 RLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTISNI 354 (526)
T ss_pred HHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhheeeccc
Confidence 367789999999999999988777766555432 233333344444 37777765555444
No 166
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=25.72 E-value=1.5e+02 Score=28.15 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHhhhCccc---hHH--HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 177 NHMKYLGLLAMSKILKTHPKS---VQS--HRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~~---~~~--~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
+..--++..=+..+++.+|.. +.+ .+..|++.+.++|.++|..|+-=+..|
T Consensus 368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 333345555566677766633 222 478899999999999999998766444
No 167
>KOG2734|consensus
Probab=24.99 E-value=1.3e+02 Score=28.79 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=35.2
Q ss_pred hhhHH-HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-------CcHHHHHHHHH
Q psy16364 9 PKSVQ-SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-------KTLMEIVKKLM 55 (276)
Q Consensus 9 P~~v~-~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-------~n~~~iv~~L~ 55 (276)
|.+|+ .-.+.++.+|.|.+..|...+++|+.++.+. +.++.++..|+
T Consensus 119 p~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv 173 (536)
T KOG2734|consen 119 PILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV 173 (536)
T ss_pred HHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH
Confidence 33444 6678899999999999999999999999864 23445555554
No 168
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=24.46 E-value=7.7e+02 Score=25.16 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=59.8
Q ss_pred ccchhhhccccCCCchHHHHHHHHHHHHhhhCc---cc-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHH-
Q psy16364 163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP---KS-VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV- 237 (276)
Q Consensus 163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~---~~-~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv- 237 (276)
+....+.+.++.....+..+.+..|.+|.-... .. .......+...+++.+.++++-|+.+|+.|+..++++.-+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344555566665544556666677777664321 11 1234566777889999999999999999999776666533
Q ss_pred -----HHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 238 -----KKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 238 -----~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
+.|...|. + ++++. ++.+|..-.+
T Consensus 370 ~~GlIPkLv~LL~--d-~~~~~-val~iLy~LS 398 (708)
T PF05804_consen 370 SLGLIPKLVELLK--D-PNFRE-VALKILYNLS 398 (708)
T ss_pred HCCCcHHHHHHhC--C-CchHH-HHHHHHHHhc
Confidence 44554443 2 25553 3444444333
No 169
>KOG1293|consensus
Probab=24.31 E-value=6e+02 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=24.7
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
-.+-+++.|.||+..|...++..++.+|-+
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVme 449 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVME 449 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhh
Confidence 345567888999999999999999998743
No 170
>KOG1943|consensus
Probab=24.05 E-value=9.1e+02 Score=25.90 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=34.7
Q ss_pred ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc
Q psy16364 8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT 46 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n 46 (276)
.|++|+..++.+++.|.|.|.-||=.|.--+-.+.+.-+
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp 373 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP 373 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc
Confidence 689999999999999999999999999888888776655
No 171
>KOG1242|consensus
Probab=23.75 E-value=7.2e+02 Score=24.58 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHhhh
Q psy16364 198 VQSHRDLIMQCLDDKDESIRLRALDLLYGMV---SKKTLMEIVKKLMVHMDK 246 (276)
Q Consensus 198 ~~~~~~~i~~~l~~~D~~iq~ralell~~l~---~~~n~~~iv~~l~~~l~~ 246 (276)
.+.....+.+.|.|.++++|.-+.+-+..++ +...+..+++.|++-+..
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d 344 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD 344 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC
Confidence 4556666777888888899888888775543 456688888888877644
No 172
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.63 E-value=3.6e+02 Score=21.13 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=45.6
Q ss_pred HHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--chH------HHHHHHHHHHhhh-----cCCchHHHH
Q psy16364 189 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTL------MEIVKKLMVHMDK-----AEGTMYRDE 255 (276)
Q Consensus 189 ~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~--~n~------~~iv~~l~~~l~~-----~~~~~~~~~ 255 (276)
-+++..+.........|..-|+++++-+|.+|+.+|-.++.. ..+ +..+++|++-+.. ..+...|+.
T Consensus 27 D~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 27 EQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 344444544444566677788999999999999999555321 111 3444565555532 123466666
Q ss_pred HHHHHHHHhc
Q psy16364 256 LLSKVIDICS 265 (276)
Q Consensus 256 l~~~i~~~~~ 265 (276)
+..-|-..++
T Consensus 107 il~li~~W~~ 116 (139)
T cd03567 107 IIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 173
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=23.57 E-value=1.9e+02 Score=21.43 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=36.6
Q ss_pred hhHHHhH----HHHHhhhcC----CChhHHhhHHHHHHhhcC--CCcHHHHHHHHHHhhhhc
Q psy16364 10 KSVQSHR----DLIMQCLDD----KDESIRLRALDLLYGMVS--KKTLMEIVKKLMVHMDKA 61 (276)
Q Consensus 10 ~~v~~~~----~~I~~~L~d----~D~sIr~~aL~Ll~~l~~--~~n~~~iv~~L~~~L~~~ 61 (276)
+++++|. .++-+.|+| .+..-+++++.-+..|+. .+++....|+++..|+.+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sa 64 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSA 64 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455444 444455555 788888888888888875 567888888888777654
No 174
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=23.13 E-value=4.4e+02 Score=21.83 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhCccchHHH-HHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHhhh
Q psy16364 179 MKYLGLLAMSKILKTHPKSVQSH-RDLIMQCLDDKDESIRLRALDLLYGMVSKKT-----------LMEIVKKLMVHMDK 246 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~~~~~~-~~~i~~~l~~~D~~iq~ralell~~l~~~~n-----------~~~iv~~l~~~l~~ 246 (276)
++--+-.++..++..-+ ..++. ...+...+++....+|..+++++..+.+.-+ +..+++.+.+.+.-
T Consensus 110 i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D 188 (228)
T PF12348_consen 110 IREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD 188 (228)
T ss_dssp HHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC
Confidence 55556667777776544 23444 6667778899999999999999977765544 34455555555555
Q ss_pred cCCchHHHHHHHHHH
Q psy16364 247 AEGTMYRDELLSKVI 261 (276)
Q Consensus 247 ~~~~~~~~~l~~~i~ 261 (276)
++ ++.|+.--.-+.
T Consensus 189 ~~-~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 189 AD-PEVREAARECLW 202 (228)
T ss_dssp S--HHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHH
Confidence 55 366665443333
No 175
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=22.78 E-value=65 Score=25.33 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=38.0
Q ss_pred cccChhhHH----HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHH
Q psy16364 5 LKTHPKSVQ----SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV 51 (276)
Q Consensus 5 ~~~~P~~v~----~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv 51 (276)
+.++|+++- -|++.|..|+.+.|.+++.+|-+|--.....+.++..+
T Consensus 81 F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~~~Vkp~~ 131 (135)
T PF13981_consen 81 FSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQLPRVKPYV 131 (135)
T ss_dssp HHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCSTTTHHHC
T ss_pred HHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcChhhhhhh
Confidence 457888774 78999999999999999999999998888777766553
No 176
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=22.34 E-value=3e+02 Score=19.60 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q psy16364 12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVI 75 (276)
Q Consensus 12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~ 75 (276)
.++|.-.+-.+|.| |+.....-..+|-.-+...|+..++..|...|.+ +-+..++..|.
T Consensus 5 A~eF~~Kvd~iL~~-dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~----e~~~~Lld~IR 63 (80)
T cd07354 5 AQEFSRKVDAILGD-DPVKKEQVFAALKQYAADKNVDCLVWALCGLLQT----EAHKKLLDEIR 63 (80)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCc----HHHHHHHHHhH
Confidence 35666677667776 8889999999999989999999999988877763 33445555555
No 177
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.73 E-value=2.8e+02 Score=20.71 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHhhhcC
Q psy16364 195 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLMVHMDKAE 248 (276)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~-n~~~iv~~l~~~l~~~~ 248 (276)
++.+....+.+......... ++.|+-.+..+++.. +...+-.+..+.|...+
T Consensus 42 ~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~lp~~~~~~l~~~~ 94 (121)
T PF12397_consen 42 DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDSLPRKVFKALLKLP 94 (121)
T ss_pred HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccccccCCHHHHHHHHcCc
Confidence 34443333333333333333 567777777777666 77766677777766654
No 178
>KOG0564|consensus
Probab=21.62 E-value=80 Score=30.42 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----c----------hHHHHHHHHHHHh
Q psy16364 185 LAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----K----------TLMEIVKKLMVHM 244 (276)
Q Consensus 185 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~----~----------n~~~iv~~l~~~l 244 (276)
.++.++++.....+|+|...-++-.+|.|.-||....|++..||.+ . |++.-+...++.|
T Consensus 223 ~sf~R~~kls~~~IP~~~~~~L~piKddDeaVr~~Gvel~vemc~kll~~g~v~~lHfyTlNlEksv~~IL~~l 296 (590)
T KOG0564|consen 223 RSFLRIAKLSGVSIPQHLMDRLEPIKDDDEAVRNYGVELIVEMCRKLLDSGVVPGLHFYTLNLEKSVAAILKRL 296 (590)
T ss_pred HHHHHHHHHhCCCCCHHHHHhcccCCCcHHHHHHHhHHHHHHHHHHHHhcCccceeEEEEecHHHHHHHHHHhc
Confidence 4445555655566888877777788999999999999999877643 2 5555555555554
No 179
>smart00427 H2B Histone H2B.
Probab=21.54 E-value=80 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=22.3
Q ss_pred hHHHHHhhhc--CCChhHHhhHHHHHHhhcC
Q psy16364 15 HRDLIMQCLD--DKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 15 ~~~~I~~~L~--d~D~sIr~~aL~Ll~~l~~ 43 (276)
|-..|.++|. +||.||..+|+.++..+++
T Consensus 3 y~~Yi~kvLKqVhpd~giS~kam~imnSfvn 33 (89)
T smart00427 3 YAIYIYKVLKQVHPDTGISSKAMSIMNSFVN 33 (89)
T ss_pred HHHHHHHHHHHhCCCccccHHHHHHHHHHHH
Confidence 4455677777 7999999999988776654
No 180
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.36 E-value=1.3e+02 Score=26.45 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=40.4
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhh
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHM 58 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L 58 (276)
+..+|.+.+.-.+.+++.|+...+.++.-+|..+.+++.. +.+..-+..+|..|
T Consensus 199 l~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 199 LSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred hcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3456777778889999999999999999999999998864 33444455555443
No 181
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=21.01 E-value=3e+02 Score=20.31 Aligned_cols=50 Identities=8% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHH-----HHHhhhcCCchHHH
Q psy16364 205 IMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKL-----MVHMDKAEGTMYRD 254 (276)
Q Consensus 205 i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l-----~~~l~~~~~~~~~~ 254 (276)
+++-.+.++..-+.++++++..+...+--..++.++ +.++....++.++.
T Consensus 35 LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~ 89 (98)
T PF14726_consen 35 LLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQA 89 (98)
T ss_pred HHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHH
Confidence 444557788888888888888888777777777666 55555433334433
No 182
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.17 E-value=4.4e+02 Score=20.75 Aligned_cols=53 Identities=6% Similarity=0.142 Sum_probs=26.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCccc-----h-HHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q psy16364 173 SRMPNHMKYLGLLAMSKILKTHPKS-----V-QSHRDLIMQCLDD-KDESIRLRALDLLY 225 (276)
Q Consensus 173 ~~~~~n~ryl~L~~l~~l~~~~~~~-----~-~~~~~~i~~~l~~-~D~~iq~ralell~ 225 (276)
.+..++.-+.+|..+-.+++.-+.. . .+..+.+...+.+ .+..+|+|.++++.
T Consensus 47 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 47 NHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3344455555665555555543211 1 1223334444444 56666666666663
No 183
>KOG0414|consensus
Probab=20.00 E-value=2.5e+02 Score=30.09 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc-CCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHH
Q psy16364 178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD-DKDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRD 254 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~-~~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~ 254 (276)
-++--+..||.|+.-+..++...|.+.++..+. +|++-||--+.=-+ ++++=++-++++-+.|...|.-.+. ..|+
T Consensus 938 ~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~-~vRk 1016 (1251)
T KOG0414|consen 938 ELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESP-SVRK 1016 (1251)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccH-HHHH
Confidence 356666677777777777777777777777775 67776665543222 2234456666666666666665553 5555
Q ss_pred HHHHHHHHHh
Q psy16364 255 ELLSKVIDIC 264 (276)
Q Consensus 255 ~l~~~i~~~~ 264 (276)
.-+.-+..+.
T Consensus 1017 ta~lvlshLI 1026 (1251)
T KOG0414|consen 1017 TALLVLSHLI 1026 (1251)
T ss_pred HHHHHHHHHH
Confidence 5555544443
Done!