Query psy16364
Match_columns 276
No_of_seqs 167 out of 1137
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:25:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 99.9 7.7E-26 2.6E-30 219.8 14.6 208 2-229 354-588 (621)
2 1w63_A Adapter-related protein 99.9 1.5E-24 5E-29 210.8 17.1 214 2-234 338-582 (618)
3 2vgl_A Adaptor protein complex 99.9 2.1E-24 7.2E-29 209.7 13.1 242 2-266 173-434 (621)
4 1w63_A Adapter-related protein 99.9 1.2E-21 4.2E-26 190.2 16.5 232 2-266 167-415 (618)
5 2vgl_B AP-2 complex subunit be 99.8 1.2E-20 4E-25 182.3 12.9 206 3-230 308-532 (591)
6 2vgl_B AP-2 complex subunit be 99.6 8.1E-15 2.8E-19 141.4 19.9 245 8-267 115-384 (591)
7 3tjz_B Coatomer subunit gamma; 99.4 5.3E-13 1.8E-17 120.6 7.1 179 3-224 165-348 (355)
8 4hxt_A De novo protein OR329; 98.5 5.4E-06 1.8E-10 69.5 16.4 223 16-275 4-251 (252)
9 1wa5_B Importin alpha subunit; 98.2 0.00013 4.4E-09 68.6 19.3 232 14-266 87-371 (530)
10 2db0_A 253AA long hypothetical 98.1 0.00064 2.2E-08 55.3 18.4 204 14-262 32-243 (253)
11 1oyz_A Hypothetical protein YI 98.1 0.00032 1.1E-08 60.1 17.8 57 15-76 24-80 (280)
12 2jdq_A Importin alpha-1 subuni 98.0 0.00059 2E-08 62.0 19.3 234 16-266 22-306 (450)
13 1oyz_A Hypothetical protein YI 98.0 0.0025 8.6E-08 54.4 22.0 66 14-79 54-120 (280)
14 2jdq_A Importin alpha-1 subuni 98.0 0.00039 1.3E-08 63.2 17.6 213 14-266 107-348 (450)
15 4b8j_A Importin subunit alpha- 97.9 0.0015 5.3E-08 61.0 21.4 233 14-266 74-359 (528)
16 4db8_A Armadillo-repeat protei 97.9 0.00035 1.2E-08 58.6 15.1 218 16-265 14-251 (252)
17 4db6_A Armadillo repeat protei 97.9 0.00047 1.6E-08 56.2 15.1 185 14-229 12-209 (210)
18 4fdd_A Transportin-1; heat rep 97.9 0.00032 1.1E-08 69.7 16.1 248 12-267 172-473 (852)
19 3b2a_A TON_1937, putative unch 97.8 0.00034 1.2E-08 58.9 13.2 187 14-246 33-235 (265)
20 4fdd_A Transportin-1; heat rep 97.8 0.0014 4.8E-08 65.1 19.2 205 8-244 84-308 (852)
21 1jdh_A Beta-catenin; beta-cate 97.7 0.0015 5E-08 60.7 17.6 241 8-266 11-296 (529)
22 3ltj_A Alpharep-4; protein eng 97.7 0.0022 7.5E-08 51.9 16.4 186 11-263 11-196 (201)
23 1wa5_B Importin alpha subunit; 97.7 0.003 1E-07 59.2 19.4 242 14-267 130-414 (530)
24 3ltm_A Alpha-REP4; protein eng 97.7 0.0022 7.5E-08 52.4 15.9 186 15-267 20-205 (211)
25 2z6h_A Catenin beta-1, beta-ca 97.7 0.0018 6.2E-08 62.4 17.3 245 9-266 9-293 (644)
26 4db8_A Armadillo-repeat protei 97.6 0.0031 1.1E-07 52.6 16.2 185 14-229 54-251 (252)
27 4hxt_A De novo protein OR329; 97.6 0.00084 2.9E-08 55.8 12.0 184 14-228 44-240 (252)
28 2z6g_A B-catenin; FULL-length, 97.6 0.0048 1.6E-07 61.1 19.2 242 13-266 149-429 (780)
29 4b8j_A Importin subunit alpha- 97.5 0.0041 1.4E-07 58.1 17.1 216 15-266 161-401 (528)
30 2bpt_A Importin beta-1 subunit 97.5 0.01 3.4E-07 58.4 20.1 196 8-230 89-296 (861)
31 3ul1_B Importin subunit alpha- 97.4 0.01 3.5E-07 55.5 18.7 222 15-267 58-305 (510)
32 1b3u_A Protein (protein phosph 97.4 0.0072 2.5E-07 56.6 16.7 49 11-59 161-213 (588)
33 2qk2_A LP04448P; mini spindles 97.3 0.015 5.1E-07 48.6 16.6 172 18-228 19-204 (242)
34 2bpt_A Importin beta-1 subunit 97.2 0.01 3.5E-07 58.3 17.1 97 170-267 418-531 (861)
35 3tpo_A Importin subunit alpha- 97.2 0.047 1.6E-06 51.2 20.6 239 15-266 77-365 (529)
36 1ibr_B P95, importin beta-1 su 97.2 0.03 1E-06 50.5 18.4 190 10-230 86-289 (462)
37 3now_A UNC-45 protein, SD10334 97.2 0.025 8.5E-07 56.1 18.7 235 12-265 375-694 (810)
38 2z6g_A B-catenin; FULL-length, 97.1 0.038 1.3E-06 54.6 19.2 231 13-266 398-664 (780)
39 3ltm_A Alpha-REP4; protein eng 97.0 0.014 4.7E-07 47.5 12.7 155 14-230 50-204 (211)
40 1b3u_A Protein (protein phosph 97.0 0.048 1.6E-06 50.9 17.9 232 13-266 48-311 (588)
41 2qk1_A Protein STU2; STU2P, XM 96.9 0.08 2.7E-06 44.8 17.3 177 19-227 21-218 (249)
42 1u6g_C TIP120 protein, CAND1; 96.9 0.11 3.9E-06 53.5 21.7 255 11-266 172-507 (1230)
43 2z6h_A Catenin beta-1, beta-ca 96.9 0.065 2.2E-06 51.4 18.5 64 15-79 225-292 (644)
44 3now_A UNC-45 protein, SD10334 96.9 0.072 2.5E-06 52.9 18.8 235 14-267 290-567 (810)
45 1jdh_A Beta-catenin; beta-cate 96.8 0.07 2.4E-06 49.2 17.7 243 14-266 59-340 (529)
46 1qgr_A Protein (importin beta 96.8 0.071 2.4E-06 52.4 18.3 93 172-266 375-480 (876)
47 4db6_A Armadillo repeat protei 96.7 0.086 3E-06 42.4 15.7 99 166-265 99-209 (210)
48 1u6g_C TIP120 protein, CAND1; 96.7 0.076 2.6E-06 54.8 18.6 221 14-265 6-243 (1230)
49 1qgr_A Protein (importin beta 96.7 0.35 1.2E-05 47.4 22.4 66 12-79 406-479 (876)
50 3ltj_A Alpharep-4; protein eng 96.6 0.066 2.2E-06 42.9 14.2 152 14-227 45-196 (201)
51 1ibr_B P95, importin beta-1 su 96.6 0.26 8.9E-06 44.3 19.6 89 177-266 342-438 (462)
52 3ul1_B Importin subunit alpha- 96.6 0.47 1.6E-05 44.1 23.4 232 15-263 144-428 (510)
53 3nmw_A APC variant protein; AR 96.3 0.096 3.3E-06 46.8 14.3 186 14-229 127-334 (354)
54 1xqr_A HSPBP1 protein; armadil 96.3 0.49 1.7E-05 41.0 21.0 194 5-230 20-239 (296)
55 3tpo_A Importin subunit alpha- 96.0 1 3.5E-05 42.0 23.9 234 15-263 163-447 (529)
56 1xqr_A HSPBP1 protein; armadil 95.9 0.74 2.5E-05 39.9 18.4 65 15-79 82-154 (296)
57 3nmz_A APC variant protein; pr 95.9 0.21 7.1E-06 46.3 15.0 187 14-230 243-451 (458)
58 2qk2_A LP04448P; mini spindles 95.2 0.16 5.6E-06 42.1 10.6 93 174-267 68-164 (242)
59 3nmw_A APC variant protein; AR 94.7 2.1 7.4E-05 37.9 20.7 65 202-267 265-336 (354)
60 3nmz_A APC variant protein; pr 94.5 2.9 9.9E-05 38.5 20.1 65 202-267 381-452 (458)
61 3tjz_B Coatomer subunit gamma; 94.5 0.36 1.2E-05 43.1 11.3 63 14-77 104-166 (355)
62 3o2t_A Symplekin; heat repeat, 93.6 3.5 0.00012 37.1 16.1 69 5-78 54-124 (386)
63 1xm9_A Plakophilin 1; armadill 93.6 4.2 0.00014 37.1 17.9 45 14-58 86-136 (457)
64 3u0r_A Apoptosis inhibitor 5; 92.9 5.8 0.0002 36.8 18.3 60 3-62 54-113 (507)
65 3opb_A SWI5-dependent HO expre 92.4 3 0.0001 41.0 14.7 85 180-265 576-683 (778)
66 2qk1_A Protein STU2; STU2P, XM 91.4 2.2 7.6E-05 35.7 11.3 92 175-267 73-177 (249)
67 3b2a_A TON_1937, putative unch 91.3 4.6 0.00016 34.0 12.6 125 126-268 92-221 (265)
68 1te4_A Conserved protein MTH18 90.6 0.93 3.2E-05 33.6 7.3 77 173-260 52-128 (131)
69 3l6x_A Catenin delta-1; cateni 90.1 13 0.00044 35.3 18.8 65 14-79 48-119 (584)
70 4ady_A RPN2, 26S proteasome re 89.8 18 0.00062 36.4 25.8 223 15-267 473-723 (963)
71 1xm9_A Plakophilin 1; armadill 89.0 2.1 7.2E-05 39.1 9.8 66 202-267 46-118 (457)
72 3opb_A SWI5-dependent HO expre 88.4 20 0.00069 35.2 18.4 65 15-79 458-530 (778)
73 1x5b_A Signal transducing adap 87.2 2.7 9.4E-05 33.0 8.1 38 6-43 44-81 (163)
74 2iw3_A Elongation factor 3A; a 86.7 20 0.00069 36.2 15.8 67 197-263 248-322 (986)
75 1te4_A Conserved protein MTH18 85.7 3.4 0.00012 30.4 7.7 40 16-59 44-83 (131)
76 3u0r_A Apoptosis inhibitor 5; 85.4 7.8 0.00027 35.9 11.1 70 177-246 42-111 (507)
77 3ldz_A STAM-1, signal transduc 85.1 3.5 0.00012 31.5 7.5 73 5-78 33-113 (140)
78 1wa5_C Importin alpha RE-expor 85.0 33 0.0011 34.2 21.8 70 178-247 473-560 (960)
79 3tt9_A Plakophilin-2; cell adh 84.8 11 0.00036 31.3 11.0 97 171-267 16-126 (233)
80 1upk_A MO25 protein; transfera 83.8 22 0.00075 31.3 16.5 139 96-264 169-334 (341)
81 3s4w_B Protein FACD2, fanconi 83.5 20 0.00067 37.5 14.2 118 108-246 155-273 (1323)
82 3ibv_A Exportin-T; karyopherin 82.3 32 0.0011 34.7 15.3 69 177-245 509-588 (980)
83 3zyq_A Hepatocyte growth facto 80.9 9.5 0.00032 31.5 9.1 37 7-43 38-74 (226)
84 3g2s_A C-terminal fragment of 80.8 11 0.00038 29.0 8.9 39 5-43 39-77 (149)
85 1mhq_A ADP-ribosylation factor 78.9 10 0.00035 29.1 8.1 38 6-43 30-67 (148)
86 2of3_A ZYG-9; multifunctional 78.4 7.3 0.00025 33.1 7.8 73 6-79 75-161 (266)
87 3gs3_A Symplekin, LD45768P; he 77.8 5 0.00017 34.0 6.5 70 4-78 43-114 (257)
88 1juq_A ADP-ribosylation factor 76.2 14 0.00047 29.1 8.4 38 6-43 42-79 (171)
89 3l6x_A Catenin delta-1; cateni 74.6 23 0.00077 33.6 10.8 96 170-265 55-163 (584)
90 3grl_A General vesicular trans 72.9 7.7 0.00026 37.3 7.1 113 14-127 122-248 (651)
91 1vdy_A Hypothetical protein (R 68.6 16 0.00055 27.8 6.8 45 10-55 45-89 (140)
92 1go3_F DNA-directed RNA polyme 67.8 6.3 0.00022 28.6 4.2 50 211-267 28-79 (107)
93 2x1g_F Cadmus; transport prote 67.4 1E+02 0.0034 30.5 16.4 86 178-266 521-616 (971)
94 2db0_A 253AA long hypothetical 66.6 51 0.0017 26.8 18.8 90 176-267 120-212 (253)
95 1dvp_A HRS, hepatocyte growth 64.7 24 0.00083 28.7 7.7 37 7-43 35-71 (220)
96 3gs3_A Symplekin, LD45768P; he 63.6 50 0.0017 27.7 9.6 54 171-224 61-114 (257)
97 1vsy_5 Proteasome activator BL 63.2 19 0.00067 36.4 8.1 110 8-121 837-963 (997)
98 3dad_A FH1/FH2 domain-containi 61.5 56 0.0019 28.6 9.7 70 166-235 163-239 (339)
99 1uw4_B UPF2, regulator of nons 59.8 40 0.0014 28.2 8.2 88 177-266 55-164 (248)
100 3m1i_C Exportin-1; heat repeat 59.1 1.5E+02 0.0052 29.7 17.4 38 193-230 533-570 (1049)
101 3tt9_A Plakophilin-2; cell adh 58.7 73 0.0025 26.1 9.7 43 202-244 96-140 (233)
102 3grl_A General vesicular trans 58.5 1.3E+02 0.0045 28.8 18.4 204 44-267 16-243 (651)
103 2x1g_F Cadmus; transport prote 56.7 69 0.0024 31.7 10.9 51 25-79 517-572 (971)
104 2of3_A ZYG-9; multifunctional 56.4 38 0.0013 28.6 7.6 67 12-79 130-196 (266)
105 4ffb_C Protein STU2; tubulin f 55.9 84 0.0029 25.9 9.9 48 13-60 101-150 (278)
106 3oc3_A Helicase MOT1, MOT1; re 55.5 22 0.00075 34.0 6.3 52 12-63 297-348 (800)
107 2x19_B Importin-13; nuclear tr 55.3 1.6E+02 0.0055 28.9 17.6 86 179-266 505-600 (963)
108 3mhs_B Protein SUS1; multi-pro 53.2 43 0.0015 23.6 6.3 50 215-265 41-90 (96)
109 4ffb_C Protein STU2; tubulin f 53.0 95 0.0033 25.5 13.2 60 168-227 144-210 (278)
110 4ayb_F DNA-directed RNA polyme 49.5 8.3 0.00028 28.3 2.0 48 213-267 30-79 (113)
111 2bnx_A Diaphanous protein homo 45.7 1.1E+02 0.0038 27.1 9.4 65 178-242 73-146 (386)
112 1elk_A Target of MYB1; superhe 45.0 64 0.0022 24.7 6.8 36 8-43 47-83 (157)
113 1x5b_A Signal transducing adap 44.5 1.1E+02 0.0036 23.6 8.9 79 187-265 39-125 (163)
114 2iw3_A Elongation factor 3A; a 42.9 2.8E+02 0.0095 28.0 16.5 69 179-247 150-225 (986)
115 4dhx_B Enhancer of yellow 2 tr 36.7 97 0.0033 22.0 6.0 52 215-266 45-97 (101)
116 3m1i_C Exportin-1; heat repeat 35.6 42 0.0014 33.8 5.4 39 5-43 531-569 (1049)
117 3oc3_A Helicase MOT1, MOT1; re 35.1 1.8E+02 0.0061 27.9 8.9 52 198-249 297-348 (800)
118 3ibv_A Exportin-T; karyopherin 34.0 3.7E+02 0.013 26.9 21.0 51 178-230 208-261 (980)
119 3rru_A TOM1L1 protein; structu 32.4 1.3E+02 0.0043 23.0 6.5 36 8-43 47-83 (152)
120 3ecs_A Translation initiation 32.3 94 0.0032 26.9 6.4 43 16-59 7-50 (315)
121 1vdy_A Hypothetical protein (R 32.0 1.6E+02 0.0056 22.1 7.6 45 196-241 45-89 (140)
122 1mhq_A ADP-ribosylation factor 31.4 1.7E+02 0.0057 22.1 8.6 52 174-225 49-112 (148)
123 1v66_A Protein inhibitor of ac 30.6 55 0.0019 21.3 3.4 28 213-241 34-61 (65)
124 1vsy_5 Proteasome activator BL 30.2 90 0.0031 31.6 6.7 49 195-243 838-891 (997)
125 3ldz_A STAM-1, signal transduc 29.4 1.8E+02 0.006 21.7 8.4 77 188-265 30-114 (140)
126 3zyq_A Hepatocyte growth facto 28.0 2.4E+02 0.0082 22.8 8.0 25 200-224 45-69 (226)
127 1juq_A ADP-ribosylation factor 27.7 2.1E+02 0.0072 22.1 8.5 68 174-241 61-144 (171)
128 4ady_A RPN2, 26S proteasome re 27.2 4.9E+02 0.017 26.2 19.9 84 178-266 593-677 (963)
129 4hat_C Exportin-1; heat repeat 25.7 3.4E+02 0.012 27.4 10.0 40 5-44 531-570 (1023)
130 2jby_A M11L protein; apoptosis 25.6 38 0.0013 25.1 2.2 31 14-44 76-106 (145)
131 3g2s_A C-terminal fragment of 25.0 2.2E+02 0.0076 21.4 8.7 67 174-240 59-141 (149)
132 2f31_A Diaphanous protein homo 24.0 1.2E+02 0.0041 24.6 5.4 30 15-44 97-126 (233)
133 1x4q_A U4/U6 small nuclear rib 23.3 1.9E+02 0.0065 20.0 6.7 63 8-74 14-77 (92)
134 4hat_C Exportin-1; heat repeat 22.7 1.8E+02 0.0062 29.4 7.4 37 193-229 533-569 (1023)
135 2f31_A Diaphanous protein homo 22.0 1.2E+02 0.0041 24.6 5.0 42 201-242 97-142 (233)
136 3o2t_A Symplekin; heat repeat, 21.2 4.3E+02 0.015 23.4 11.4 57 168-224 68-124 (386)
137 1ho8_A Vacuolar ATP synthase s 20.2 1.1E+02 0.0037 28.2 4.6 49 179-227 421-474 (480)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.93 E-value=7.7e-26 Score=219.85 Aligned_cols=208 Identities=20% Similarity=0.379 Sum_probs=180.5
Q ss_pred ccccccCh--hhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364 2 SKILKTHP--KSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC 78 (276)
Q Consensus 2 ~~i~~~~P--~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~ 78 (276)
.++...+| ++++.|.+.++.||. |+|++||++||++++.|++++|+..++++|.+|+..+++ +||.+++.+|..+|
T Consensus 354 ~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~-~~~~~~v~~I~~la 432 (621)
T 2vgl_A 354 CTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADY-SIREEIVLKVAILA 432 (621)
T ss_dssp HHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence 35666776 789999999999999 999999999999999999999999999999999998876 99999999999999
Q ss_pred hhcCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHh
Q psy16364 79 SQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDE 158 (276)
Q Consensus 79 ~~~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~ 158 (276)
. +|++++.|++++++++++..|+++..+++..+++++.+.|+.|.+++..+...++++.. ...+++.+
T Consensus 433 ~----k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~--------~~~li~~~ 500 (621)
T 2vgl_A 433 E----KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPAC--------HENLVKVG 500 (621)
T ss_dssp H----HHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC--------CHHHHHHH
T ss_pred H----hcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccc--------hHHHHHHH
Confidence 8 89999999999999999999999999999999999999999999999999998886542 13567777
Q ss_pred hhccccchhhhccccCCCc----------------------hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc--CCCH
Q psy16364 159 YSDRSSKIFNIKFSSRMPN----------------------HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD--DKDE 214 (276)
Q Consensus 159 ~~~~~~~~ilGef~~~~~~----------------------n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~--~~D~ 214 (276)
+ |++|||++..++ .+|...|+++.|+....|+..+..+..+-.+.. |.|.
T Consensus 501 ~------wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 501 G------YILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp H------HHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSH
T ss_pred H------HHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCH
Confidence 7 999999875432 234456899999999888877776776666777 9999
Q ss_pred HHHHHHHHHHHhcCC
Q psy16364 215 SIRLRALDLLYGMVS 229 (276)
Q Consensus 215 ~iq~ralell~~l~~ 229 (276)
++|+||.+|. .+.+
T Consensus 575 evrdRA~~y~-~Ll~ 588 (621)
T 2vgl_A 575 ELQQRAVEYL-RLST 588 (621)
T ss_dssp HHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHH-HHHc
Confidence 9999999998 5543
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.92 E-value=1.5e-24 Score=210.78 Aligned_cols=214 Identities=16% Similarity=0.264 Sum_probs=182.6
Q ss_pred ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364 2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 81 (276)
Q Consensus 2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~ 81 (276)
.++.+.+|+++++|.+.++.||.|+|++||++|+++++.|++++|+..++++|.+++...++ +||.+++.+|..+|.
T Consensus 338 ~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~-e~r~~~v~~I~~la~-- 414 (618)
T 1w63_A 338 LKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEP-EFKADCASGIFLAAE-- 414 (618)
T ss_dssp HHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH--
T ss_pred HHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH--
Confidence 35677899999999999999999999999999999999999999999999999999987665 999999999999999
Q ss_pred CCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhc
Q psy16364 82 NYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD 161 (276)
Q Consensus 82 ~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~ 161 (276)
+|++++.|++++++++++..|.++..+++..+.+++.+.|+.+.+++..++..++.... ..++.+.++
T Consensus 415 --k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~--------~~~~~~~~~-- 482 (618)
T 1w63_A 415 --KYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYS--------QQPLVQVAA-- 482 (618)
T ss_dssp --SSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCS--------CSHHHHHHH--
T ss_pred --HhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccc--------cHHHHHHHH--
Confidence 88899999999999999999888889999999999999999999999999988874211 124556677
Q ss_pred cccchhhhccccCC-------------------------------CchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhc
Q psy16364 162 RSSKIFNIKFSSRM-------------------------------PNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLD 210 (276)
Q Consensus 162 ~~~~~ilGef~~~~-------------------------------~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~ 210 (276)
|++|||++.. +..+|...++++.|+....|+..+..+..+-.+..
T Consensus 483 ----wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~ 558 (618)
T 1w63_A 483 ----WCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGS 558 (618)
T ss_dssp ----HHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTT
T ss_pred ----HHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcC
Confidence 9999998521 12356667899999999888877777777778889
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHH
Q psy16364 211 DKDESIRLRALDLLYGMVSKKTLM 234 (276)
Q Consensus 211 ~~D~~iq~ralell~~l~~~~n~~ 234 (276)
|.|.++|+||.+|+-.+...+.++
T Consensus 559 ~~d~evrdRA~~y~~ll~~~~~~~ 582 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKKYDHMR 582 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHcCcHHHH
Confidence 999999999999994444444443
No 3
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.91 E-value=2.1e-24 Score=209.73 Aligned_cols=242 Identities=19% Similarity=0.329 Sum_probs=185.4
Q ss_pred ccccccChhhHH--HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q psy16364 2 SKILKTHPKSVQ--SHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI 77 (276)
Q Consensus 2 ~~i~~~~P~~v~--~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~ 77 (276)
.|+++.+|+.+. +|.+.+.++|+|+|++|+..|+.++.+++.. +.+...++.+++.|.. +...
T Consensus 173 ~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~-------------ll~~ 239 (621)
T 2vgl_A 173 LRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSR-------------IVTS 239 (621)
T ss_dssp HHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHH-------------HHHC
T ss_pred HHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-------------HHhC
Confidence 578899999999 8999999999999999999999999999853 3455566666655432 1111
Q ss_pred --hhhcCCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhh----------hhHHHHHHHHHHhhcCCCCCC
Q psy16364 78 --CSQNNYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVS----------AVRAFAVAQMSSLLASPSPPL 144 (276)
Q Consensus 78 --~~~~~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~----------~~~~~~~~~~~~ll~~~~~~~ 144 (276)
+...+|.| ..+.||.+.++++++...+.....+..+.+.+++.+.- .++ +.+...+.++++++++.
T Consensus 240 ~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~-~~n~~~aVl~ea~~~i~ 318 (621)
T 2vgl_A 240 ASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ-HSNAKNAVLFEAISLII 318 (621)
T ss_dssp CSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc-ccchHHHHHHHHHHHHH
Confidence 21134544 44789999999999988765333556665655544321 111 11222344444443332
Q ss_pred CCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhc-CCCHHHHHHHH
Q psy16364 145 SQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLD-DKDESIRLRAL 221 (276)
Q Consensus 145 ~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~-~~D~~iq~ral 221 (276)
...+ .++.+..++ ..+|+|+.+.++|+||++|.++.+++..+| ..+.+|+..++.||+ |+|.+||++|+
T Consensus 319 ~l~~--~~~~~~~~~------~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL 390 (621)
T 2vgl_A 319 HHDS--EPNLLVRAC------NQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAV 390 (621)
T ss_dssp HHCC--CHHHHHHHH------HHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred hcCC--cHHHHHHHH------HHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHH
Confidence 1111 246667777 899999999999999999999999999886 678899999999999 99999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 222 DLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 222 ell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
|+++.|++++|++.|+++|+.|+..+++ +||.+++.+|..+|++
T Consensus 391 ~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~-~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 391 DLLYAMCDRSNAQQIVAEMLSYLETADY-SIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChhhHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999885 9999999999999987
No 4
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.87 E-value=1.2e-21 Score=190.21 Aligned_cols=232 Identities=19% Similarity=0.290 Sum_probs=177.5
Q ss_pred ccccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-----cHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364 2 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-----TLMEIVKKLMVHMDKAEGTMYRDELLSKVID 76 (276)
Q Consensus 2 ~~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-----n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~ 76 (276)
.++++.+|+.++.+.+.+.++|+|+|++|+..|+.++..++..+ .+..+++.+++.|... ..
T Consensus 167 ~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~-------------~~ 233 (618)
T 1w63_A 167 VHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL-------------IM 233 (618)
T ss_dssp HHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH-------------HH
T ss_pred HHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-------------Hc
Confidence 46788899999999999999999999999999999999998653 2344555555544321 10
Q ss_pred HhhhcCCccC-CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHhhcCCCCCC
Q psy16364 77 ICSQNNYQYI-TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV-----------SAVRAFAVAQMSSLLASPSPPL 144 (276)
Q Consensus 77 ~~~~~~y~~~-~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~-----------~~~~~~~~~~~~~ll~~~~~~~ 144 (276)
.-...+|.|. .+.||.+..++++++..+.. ..+..+.+.+++.+. +++.-.+++.+..+ .
T Consensus 234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~------ 305 (618)
T 1w63_A 234 SGYSPEHDVSGISDPFLQVRILRLLRILGRN-DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-K------ 305 (618)
T ss_dssp SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-C------
T ss_pred CCCCccccccCCCCChHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-C------
Confidence 0011244443 57899999999999876654 244444444444332 22333344433321 1
Q ss_pred CCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 145 SQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 145 ~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
. .+++...++ ..+++|+.+.++|+||++|.++.+++..+|..+.+|...++.|++|+|.+||++|+|++
T Consensus 306 ---~--~~~l~~~a~------~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 306 ---S--ESGLRVLAI------NILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp ---C--CHHHHHHHH------HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred ---C--CHHHHHHHH------HHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence 0 123333455 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 225 YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 225 ~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+.|++++|++.++++|++|+...+ .+||.+++.+|..+|++
T Consensus 375 ~~l~~~~nv~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 375 FALVNGNNIRGMMKELLYFLDSCE-PEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHCCSSSTHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHS
T ss_pred HHHcccccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 59999999999999997
No 5
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.84 E-value=1.2e-20 Score=182.30 Aligned_cols=206 Identities=12% Similarity=0.160 Sum_probs=169.3
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 82 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~ 82 (276)
++.+.+|+.++.|...+. |+.++|.+||++|+++++.+++++|+..++++|..++...++ ++|.+++.+|..+|.
T Consensus 308 ~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~-~~r~~~v~aI~~la~--- 382 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDV-DFVRKAVRAIGRCAI--- 382 (591)
T ss_dssp HHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHT---
T ss_pred HHHHhChHHHHHHHHhhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHH---
Confidence 456778888888777654 655556999999999999999999999999999999987665 999999999999998
Q ss_pred CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364 83 YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR 162 (276)
Q Consensus 83 y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (276)
+|++++.|+++.+++++...|+++..+++..+.+++.+.|+.+.+++..+...++... .+++...++
T Consensus 383 -~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~---------~~~~~~~~~--- 449 (591)
T 2vgl_B 383 -KVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD---------EPDARAAMI--- 449 (591)
T ss_dssp -TCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC---------SHHHHHHHH---
T ss_pred -hChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc---------CHHHHHHHH---
Confidence 7888899999999999999888878888999999999999888888888887776532 256666677
Q ss_pred ccchhhhccccCCCc-----------------hHHHHHHHHHHHHhhhCccchH-HHHHHHHHHhcC-CCHHHHHHHHHH
Q psy16364 163 SSKIFNIKFSSRMPN-----------------HMKYLGLLAMSKILKTHPKSVQ-SHRDLIMQCLDD-KDESIRLRALDL 223 (276)
Q Consensus 163 ~~~~ilGef~~~~~~-----------------n~ryl~L~~l~~l~~~~~~~~~-~~~~~i~~~l~~-~D~~iq~ralel 223 (276)
|++|||+...++ ..|...+.++.|+....|+... ..+..+-.+..| .|.++|+||.+|
T Consensus 450 ---wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y 526 (591)
T 2vgl_B 450 ---WIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIY 526 (591)
T ss_dssp ---HHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---HHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Confidence 999999886643 3566778999999998887764 445555555554 899999999999
Q ss_pred HHhcCCc
Q psy16364 224 LYGMVSK 230 (276)
Q Consensus 224 l~~l~~~ 230 (276)
+ ++.+.
T Consensus 527 ~-~ll~~ 532 (591)
T 2vgl_B 527 W-RLLST 532 (591)
T ss_dssp H-TTTTT
T ss_pred H-HHHCc
Confidence 9 66654
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.64 E-value=8.1e-15 Score=141.42 Aligned_cols=245 Identities=11% Similarity=0.129 Sum_probs=167.2
Q ss_pred ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHH--HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC-
Q psy16364 8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLM--EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN- 82 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~--~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~- 82 (276)
.|++.+...+.+.+||.|+++.||++|...+..++. ++-+. .+++.|.+.|...++ ..+...+..+..++..+.
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNP-MVVANAVAALSEISESHPN 193 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCS
T ss_pred hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCC
Confidence 566777777888888888889998888888888764 44454 466777776654433 666666666666665321
Q ss_pred ---Ccc------------CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhcCCCC
Q psy16364 83 ---YQY------------ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI-----RVSAVRAFAVAQMSSLLASPSP 142 (276)
Q Consensus 83 ---y~~------------~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~-----~~~~~~~~~~~~~~~ll~~~~~ 142 (276)
+.. ....||.+..+++++...++.. ..-.+.+.+.+. ..++++..++..+..+.....
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~- 271 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP- 271 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC-
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC-
Confidence 010 1245899999999887665432 333334444333 234566666665555432110
Q ss_pred CCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHH
Q psy16364 143 PLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALD 222 (276)
Q Consensus 143 ~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~rale 222 (276)
. .++.+..++ .+.+ -.+. ++.+.++|+||++|.++.+++..+|..+..|...++ |+.+.|.+||++|+|
T Consensus 272 --~-----~~~~~~~~~-~~~~-~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~ 340 (591)
T 2vgl_B 272 --K-----DSDYYNMLL-KKLA-PPLV-TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLD 340 (591)
T ss_dssp --B-----TTBSHHHHH-HHTH-HHHH-HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHH
T ss_pred --C-----CHHHHHHHH-HHHH-HHHH-HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-eccCChHHHHHHHHH
Confidence 0 012222211 0000 1122 334478899999999999999999998888776543 665666999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 223 LLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 223 ll~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
+++.|++++|++.++++|..|+...++ +||.+.+.+|..+|++.
T Consensus 341 ~L~~l~~~~nv~~iv~~L~~~l~~~d~-~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 341 IMIRLASQANIAQVLAELKEYATEVDV-DFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHTCCSSTHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988874 99999999999999874
No 7
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.37 E-value=5.3e-13 Score=120.61 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=67.2
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 82 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~ 82 (276)
|+++.+|+.++.|.+.+.++++|++++|...|+.+++.+...+ +..+.+|+..+.
T Consensus 165 kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~a~~kLv~~l~----------------------- 219 (355)
T 3tjz_B 165 HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RLAVSKMISKFT----------------------- 219 (355)
T ss_dssp HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH-----------------------
T ss_pred HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hHHHHHHHHHHh-----------------------
Confidence 4455555555555555555555555555555555555554322 111222222111
Q ss_pred CccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-----hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHH
Q psy16364 83 YQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-----VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFD 157 (276)
Q Consensus 83 y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-----~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~ 157 (276)
......||-+..+++++...+....++..+.+.+++.. .+++.-+|+..+..+-. . ..+.+..
T Consensus 220 -~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~----------~~~~~~~ 287 (355)
T 3tjz_B 220 -RHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-C----------SAKELAP 287 (355)
T ss_dssp -SSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------------
T ss_pred -cCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-C----------CHHHHHH
Confidence 11123599999999988665443213455666666653 23344444443333211 0 1234444
Q ss_pred hhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 158 EYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 158 ~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
++ ..+|.|+.+.++|+||++|..+.+++..+|+.+++|...|.+|+.|+|.+|+..|+--|
T Consensus 288 a~------~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 288 AV------SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp CC------CTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred HH------HHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 44 89999999999999999999999999999999999999999999999999999997655
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.51 E-value=5.4e-06 Score=69.51 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=129.9
Q ss_pred HHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 16 RDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
++.++++|.++|+.++..|+..+..++... +.. ..++.|++.|...+ .+.+...+..+..++.. .++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-----~~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASG-----PDE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcC-----ChH
Confidence 577899999999999999999999998654 222 25788888877655 36777767666666641 011
Q ss_pred hhh------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364 89 FEW------YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR 162 (276)
Q Consensus 89 ~~W------~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (276)
... .+..+++++.-. .+.++..+...+..+.... ++. +..+.+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~------------------~~~v~~~a~~~L~~l~~~~-----------~~~-~~~~~~~ 127 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTST------------------DSEVQKEAARALANIASGP-----------DEA-IKAIVDA 127 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS------------------SHHHHHHHHHHHHHHTTSC-----------HHH-HHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHcCC-----------HHH-HHHHHHC
Confidence 111 122333333211 1223333333333332110 000 0000011
Q ss_pred ccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHH
Q psy16364 163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLME 235 (276)
Q Consensus 163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~ 235 (276)
++.-.+-+++.+.+...+.-++.++..++...+... ....+.++..|.++|..+|..|+..+..++. +++.+.
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 207 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA 207 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 111233344444445556666666666655443221 2346778889999999999999999988885 333333
Q ss_pred -----HHHHHHHHhhhcCCchHHHHHHHHHHHHhccCCccccCCC
Q psy16364 236 -----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNF 275 (276)
Q Consensus 236 -----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~y~~~~~f 275 (276)
+++.|++.+...+ +..|+.-+..+..+++......-++|
T Consensus 208 l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~ 251 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGWLEHHHHH 251 (252)
T ss_dssp HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCBCCC----
T ss_pred HHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCCccccccC
Confidence 3566777766555 59999999999999988766555443
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.18 E-value=0.00013 Score=68.61 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=140.2
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY 85 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~ 85 (276)
.-++.++++|.++|+.++..|+..+..+++. .+.. .+++.|++.|...++...|...+..+..++.. .
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~----~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG----T 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS----C
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC----C
Confidence 4478889999999999999999999998764 2332 36888888887764447888877777777652 1
Q ss_pred CCChhh-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364 86 ITNFEW-----YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRMAEMM 155 (276)
Q Consensus 86 ~~~~~W-----~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~L 155 (276)
.....+ .+..+++++.-....+.......+..+....+..+.. ++..+..++... ..++.
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----------~~~v~ 232 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN----------KPSLI 232 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC----------CHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC----------CHHHH
Confidence 000011 2455666665422111122222333333221222211 233344444321 13444
Q ss_pred HHhhhccccchhhhccc-----------------------cCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHH
Q psy16364 156 FDEYSDRSSKIFNIKFS-----------------------SRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQ 207 (276)
Q Consensus 156 ~~~~~~~~~~~ilGef~-----------------------~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~ 207 (276)
..++ |+++.+. .+.+...+.-++.++..++...+.... .....++.
T Consensus 233 ~~a~------~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~ 306 (530)
T 1wa5_B 233 RTAT------WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306 (530)
T ss_dssp HHHH------HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHH------HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence 4444 5555443 333344566667777777765443222 34577888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCcc--hHH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 208 CLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 208 ~l~~~D~~iq~ralell~~l~~~~--n~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+|.++|..+|..|+..+..++... ..+ .+++.|+..|...+ ...|.+-+..+..++..
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAG 371 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS
T ss_pred HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 999999999999999998887542 222 35566777776665 58999999999888864
No 10
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.08 E-value=0.00064 Score=55.32 Aligned_cols=204 Identities=16% Similarity=0.157 Sum_probs=130.5
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcC--CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhh
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEW 91 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W 91 (276)
++.+.++..|+|+=-+|+.-|+.++..+.. ++-..+++.+|+.-++++..-....++...+..++.. .|-
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--------~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--------KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--------CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--------CHH
Confidence 678888999999888999999999999986 4668889999998888876544444444444444331 122
Q ss_pred HHHHHHHHHHh---cCCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364 92 YMTVLVELTRM---EGTR-HGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF 167 (276)
Q Consensus 92 ~v~~ll~ll~~---~~~~-~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i 167 (276)
.+..+.-.+.- .|+. ..-.++.-+-+++..+ |+++...+ -=
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-----------------------------P~l~~~v~------rd 148 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-----------------------------PMLMASIV------RD 148 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-----------------------------HHHHHHHH------HH
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-----------------------------hHHHHHHH------HH
Confidence 33333333221 1111 0011122222333222 23333333 22
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhh
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIVKKLMVHMD 245 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~iv~~l~~~l~ 245 (276)
+|-.+.++++-.|..+|.-+..+...++..+....+.++..|.|.|.-+|--|.|-|..+. |+. ++.++..-+..+.
T Consensus 149 i~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~ 227 (253)
T 2db0_A 149 FMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELN 227 (253)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCC
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhc
Confidence 3444556666667777777777777777778888888999999999999999999986654 444 9999999998886
Q ss_pred hcCCchHHHHHHHHHHH
Q psy16364 246 KAEGTMYRDELLSKVID 262 (276)
Q Consensus 246 ~~~~~~~~~~l~~~i~~ 262 (276)
-..+ .....+...+..
T Consensus 228 D~S~-lv~~~V~egL~r 243 (253)
T 2db0_A 228 DTSS-LVNKTVKEGISR 243 (253)
T ss_dssp CSCH-HHHHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHH
Confidence 6553 555555544443
No 11
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.06 E-value=0.00032 Score=60.09 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=34.1
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVID 76 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~ 76 (276)
-++.+++.|.|+|+.+|..|+..+..+.++ ..++.|++.|...++ ..|...+..+..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~----~~~~~L~~~l~d~~~-~vR~~A~~aL~~ 80 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQ----DAVRLAIEFCSDKNY-IRRDIGAFILGQ 80 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH----HHHHHHHHHHTCSSH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCc----hHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 356667777777777777777777776532 345555555554332 455554444443
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.00 E-value=0.00059 Score=61.98 Aligned_cols=234 Identities=12% Similarity=0.090 Sum_probs=135.2
Q ss_pred HHHHHhhhcCCChhHHhhHHHHHHhhcC---CCcHH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 16 RDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~~n~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
++.+++.|.++|+.+|..|+..+..++. ..+.. .+++.|++.|...++...|......+..++..+. ...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-LQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHH
Confidence 5668889999999999999999998753 12222 5788888888776445777777777776664100 000
Q ss_pred CC--hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 87 TN--FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 87 ~~--~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
.. ..=.+..+++++.-....+.......+..+....+..+.. ++..+..++.... ..++...++
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---------~~~v~~~a~ 171 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---------RLTMTRNAV 171 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---------CHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---------CHHHHHHHH
Confidence 00 0013445555554321111112222233333222222221 2333444443210 134555555
Q ss_pred hccccchhhhccccC-----------------------CCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcC
Q psy16364 160 SDRSSKIFNIKFSSR-----------------------MPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDD 211 (276)
Q Consensus 160 ~~~~~~~ilGef~~~-----------------------~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~ 211 (276)
|.+|.++.. .+...+.-+..++..++...+... ....+.++..|.+
T Consensus 172 ------~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 172 ------WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp ------HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred ------HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence 666655432 223345555666666665433211 2346778889999
Q ss_pred CCHHHHHHHHHHHHhcCCcch--HH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 212 KDESIRLRALDLLYGMVSKKT--LM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 212 ~D~~iq~ralell~~l~~~~n--~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+|.++|..|+..+..++.... .+ .+++.|++.|...+ +..|...+..+..++..
T Consensus 246 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~ 306 (450)
T 2jdq_A 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAG 306 (450)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTS
T ss_pred CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 999999999999988876432 11 36677777776655 58999988888888863
No 13
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.98 E-value=0.0025 Score=54.41 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=46.2
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcC-CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVS-KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~-~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
...+.+.++|.|+|+.+|..|+..+..+.. +..+..+++.|.+.+....+...|...+..+..++.
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 356778899999999999999999988874 345566666555443333344677766666665554
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.97 E-value=0.00039 Score=63.19 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=122.2
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-H------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-L------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
..++.++++|.++|+.+|..|+..+..++.... . ..+++.|++.+....+...|...+..+..++...+-...
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 467888999999999999999999999987532 1 135788888887544457888888878777753100000
Q ss_pred -CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----hhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhH
Q psy16364 87 -TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV----SAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMF 156 (276)
Q Consensus 87 -~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~----~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~ 156 (276)
.-..=.+..+++++... +..+.......+.+. +.... .++..+..++
T Consensus 187 ~~~~~~~l~~L~~~l~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll------------------- 243 (450)
T 2jdq_A 187 FAKVSPCLNVLSWLLFVS----DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL------------------- 243 (450)
T ss_dssp GGGTGGGHHHHHHHTTCC----CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-------------------
Confidence 00011344455554321 123322222222211 11100 1122222222
Q ss_pred HhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--
Q psy16364 157 DEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS-- 229 (276)
Q Consensus 157 ~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~-- 229 (276)
...+...+.-++.++..++...+... ....+.+...|++++..+|+.|+..+..++.
T Consensus 244 ----------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 244 ----------------MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp ----------------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred ----------------CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 22233334444444444433322111 1345667788999999999999999988874
Q ss_pred cchHH-----HHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 230 KKTLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 230 ~~n~~-----~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
.+..+ .+++.|++.|...+ +..|.+.+..+..++..
T Consensus 308 ~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 308 RAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcC
Confidence 34443 34556666666555 58899988888888764
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.94 E-value=0.0015 Score=61.03 Aligned_cols=233 Identities=12% Similarity=0.080 Sum_probs=139.2
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY 85 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~ 85 (276)
.-++.+++.|.++|+.++..|+..+..++.. .+.. .+++.|++.|...+....|...+..+..++.. .
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~----~ 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG----T 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS----C
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC----C
Confidence 3478899999999999999999999988653 2333 36888998887765457888777777777751 0
Q ss_pred CCChh------hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364 86 ITNFE------WYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEM 154 (276)
Q Consensus 86 ~~~~~------W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~ 154 (276)
+... =.+..+++++.-....+.......+..+....+..+... +..+..++... . ...+
T Consensus 150 -~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~------~---~~~v 219 (528)
T 4b8j_A 150 -SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH------T---KLSM 219 (528)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT------C---CHHH
T ss_pred -HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC------C---CHHH
Confidence 0000 023444454443211111222233333333223333222 22333333211 1 1456
Q ss_pred hHHhhhccccchhhhccccC----------------------CCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHH
Q psy16364 155 MFDEYSDRSSKIFNIKFSSR----------------------MPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQ 207 (276)
Q Consensus 155 L~~~~~~~~~~~ilGef~~~----------------------~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~ 207 (276)
...++ |+++.++.. .+...+.-++.++..++...+...+ .....++.
T Consensus 220 ~~~a~------~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~ 293 (528)
T 4b8j_A 220 LRNAT------WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293 (528)
T ss_dssp HHHHH------HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHH------HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHH
Confidence 66666 666665443 2233455566667766654433221 34567888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCcc--hHHH-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 208 CLDDKDESIRLRALDLLYGMVSKK--TLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 208 ~l~~~D~~iq~ralell~~l~~~~--n~~~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+|.+++..+|..|+..+..++... ..+. +++.|+..|....++..|.+.+..+..++..
T Consensus 294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 999999999999999998887632 2222 3566777776652358999999989888863
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.92 E-value=0.00035 Score=58.60 Aligned_cols=218 Identities=15% Similarity=0.125 Sum_probs=121.6
Q ss_pred HHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 16 RDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
.+.+.+.|.++|+.++..|+..+..+... .+... .++.|++.|...+ ...+...+..+..++.. +
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~-------~ 85 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG-------G 85 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS-------C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC-------C
Confidence 56778899999999999999999765542 22222 5677888777655 36666666666665541 0
Q ss_pred hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364 89 FEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF 167 (276)
Q Consensus 89 ~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i 167 (276)
+-....+.+ ......+.+++.. .+.++..+...+..+-... +.-.....+.++.-.
T Consensus 86 -~~~~~~i~~----------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~~~~~i~~ 142 (252)
T 4db8_A 86 -NEQIQAVID----------AGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQIQAVIDAGALPA 142 (252)
T ss_dssp -HHHHHHHHH----------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC------------HHHHHHHHHTTHHHH
T ss_pred -HHHHHHHHH----------cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC------------chHHHHHHHCCCHHH
Confidence 111111111 0111222222221 1233444444444442211 000000111122234
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH----
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI---- 236 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i---- 236 (276)
+-+++.+.+...+.-++.++..++...+... ....+.++..|+++|..+|..|+..+..++. +++.+.+
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 222 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 222 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 4455555555666666777777665443322 2345778889999999999999999988873 3444443
Q ss_pred -HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 237 -VKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 237 -v~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
++.|++.+...+ +..|..-+..+..+++
T Consensus 223 ~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 223 ALEKLEQLQSHEN-EKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTTTCSS-SHHHHTHHHHHHTTC-
T ss_pred cHHHHHHHhCCCC-HHHHHHHHHHHHHHhc
Confidence 344555555555 4888888877777664
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.89 E-value=0.00047 Score=56.18 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=104.3
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
...+.+..+|.++|+.++..|+..+..++..+ +.. ..++.|++.|...++ ..|...+..+..++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~------ 84 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG------ 84 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTS------
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcC------
Confidence 45678899999999999999999999998543 222 357888888876543 6677666666666531
Q ss_pred CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364 87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK 165 (276)
Q Consensus 87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 165 (276)
+... ...+++ . .....+.+++.. .+.++..+...+..+.... .+..... .+.++.
T Consensus 85 -~~~~-~~~i~~----~------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----------~~~~~~~-~~~~~i 140 (210)
T 4db6_A 85 -GNEQ-IQAVID----A------GALPALVQLLSSPNEQILQEALWALSNIASGG-----------NEQIQAV-IDAGAL 140 (210)
T ss_dssp -CHHH-HHHHHH----T------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----------HHHHHHH-HHTTHH
T ss_pred -CcHH-HHHHHH----C------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-----------HHHHHHH-HHcCcH
Confidence 1111 011100 0 011122222211 1233444444444432210 0110000 111222
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
-.+-+++.+.+...+.-++.++..++..++.... ...+.+...+++.|.++|+.|...+-.+++
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 3444555555556677777777777765443221 345678889999999999999999977764
No 18
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.86 E-value=0.00032 Score=69.74 Aligned_cols=248 Identities=11% Similarity=0.081 Sum_probs=136.4
Q ss_pred HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC------cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364 12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK------TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY 85 (276)
Q Consensus 12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~------n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~ 85 (276)
+....+.++++|.|+++.||..|+..+..++... .+..+++.+.+.+...+ ...|......+..+++.. +.+
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~-~~~ 249 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVR-MDR 249 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHC-HHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhC-HHH
Confidence 4567888899999999999999999998887532 34567777776554433 377877777777666521 111
Q ss_pred CCChhhHHHHHHHHH-HhcCCcchHHH----HHHHHHHHHH------hhhhHHHHHHHHHHhh-----------cCCCCC
Q psy16364 86 ITNFEWYMTVLVELT-RMEGTRHGALV----AAQMMDVAIR------VSAVRAFAVAQMSSLL-----------ASPSPP 143 (276)
Q Consensus 86 ~~~~~W~v~~ll~ll-~~~~~~~~~~i----~~~l~~vi~~------~~~~~~~~~~~~~~ll-----------~~~~~~ 143 (276)
.. + +...++..+ ....+. ...+ .+.+..+... .+..-...+..+...+ .+..--
T Consensus 250 ~~--~-~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 250 LL--P-HMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp HG--G-GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred HH--H-HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 11 1 122233322 222221 2333 2233332210 0000011222222222 110000
Q ss_pred CC-----CCCc---hhhhhhHHhhhccccc-------hhhhccccCCCchHHHHHHHHHHHHhhhCcc----chHHHHHH
Q psy16364 144 LS-----QPSS---RMAEMMFDEYSDRSSK-------IFNIKFSSRMPNHMKYLGLLAMSKILKTHPK----SVQSHRDL 204 (276)
Q Consensus 144 ~~-----~~~~---~~~~~L~~~~~~~~~~-------~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~----~~~~~~~~ 204 (276)
.. ...+ .....|...+ ...+. -.+.+++.+.+...|.-++.++..++...+. ..+.....
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la-~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHH-HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 00 0000 0001111111 00011 1223344555567888888888888865432 34566777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 205 IMQCLDDKDESIRLRALDLLYGMVS-------KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 205 i~~~l~~~D~~iq~ralell~~l~~-------~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
++.+++|++..+|..|...+-.++. ...+..+++.|++.+...+ +..|...+..+..+|+..
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHh
Confidence 8889999999999999988865543 3457788888888876655 588888888888887653
No 19
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.84 E-value=0.00034 Score=58.91 Aligned_cols=187 Identities=17% Similarity=0.131 Sum_probs=120.5
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
+....+..+|+|.|+.++.+||-.+-++...-+ ++.+.+.+++.++..+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dE----------------------- 89 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENE----------------------- 89 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTH-----------------------
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccch-----------------------
Confidence 567778899999999999999999999886521 34444444444332221
Q ss_pred CChhhHHHHHHHHHHh--cCCcch----HHHHHHHHHHHHHh-hhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 87 TNFEWYMTVLVELTRM--EGTRHG----ALVAAQMMDVAIRV-SAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 87 ~~~~W~v~~ll~ll~~--~~~~~~----~~i~~~l~~vi~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
-....-++.++. .|...+ ..+.+.+.+++.+- +-++.++.+.+..+ .+. .. .+.+ .
T Consensus 90 ----kval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~--~~-----~~~V----~ 152 (265)
T 3b2a_A 90 ----KVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL--ED-----SKLV----R 152 (265)
T ss_dssp ----HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS--CC-----CHHH----H
T ss_pred ----hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc--cc-----hHHH----H
Confidence 011111111111 111112 34555566665532 23456666666555 211 00 1222 2
Q ss_pred hccccchhhhccccCCCchHHHHHHHHHHHHhhhC--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHH
Q psy16364 160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTH--PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIV 237 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~--~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv 237 (276)
.++.+.+.+.+..++-.|+.++..++... ++........|-+.|++.|+.++.+|++.+..|.+..-.+.+.
T Consensus 153 ------~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~ 226 (265)
T 3b2a_A 153 ------TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVK 226 (265)
T ss_dssp ------HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCH
T ss_pred ------HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHH
Confidence 45556667888889999999999999875 5777888888889999999999999999999999987767777
Q ss_pred HHHHHHhhh
Q psy16364 238 KKLMVHMDK 246 (276)
Q Consensus 238 ~~l~~~l~~ 246 (276)
.++..-+..
T Consensus 227 ~~~~~~~~~ 235 (265)
T 3b2a_A 227 IELLKISRI 235 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655533
No 20
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.78 E-value=0.0014 Score=65.15 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=123.5
Q ss_pred ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC---CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc
Q psy16364 8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ 84 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~---~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~ 84 (276)
.|+.-..-++.++++|.|+++.||..+..++..++. +..|.++++.|+..+...+. ..|.-.+..+..+|+.....
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~-~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 84 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDY-NTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSH-HHHHHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhHHH
Confidence 344555778889999999999999999999999985 35688899999988765443 56665565555666521111
Q ss_pred cC-----CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 85 YI-----TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 85 ~~-----~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
+. ...+..+..+++ ..+. ..+.+|..++..+..++... +......+....
T Consensus 163 ~~~~~~~~~~~~il~~l~~---~l~~---------------~~~~vR~~A~~aL~~~~~~~-------~~~~~~~~~~~l 217 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQ---FFKH---------------SSPKIRSHAVACVNQFIISR-------TQALMLHIDSFI 217 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTT---TTTC---------------SSHHHHHHHHHHHHTTTTTT-------CHHHHTSHHHHH
T ss_pred hchhhhcchHHHHHHHHHH---HhcC---------------CCHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHH
Confidence 10 001111222211 1111 12334555665555444221 000111111111
Q ss_pred hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHH----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----
Q psy16364 160 SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSH----RDLIMQCLDDKDESIRLRALDLLYGMVSKK---- 231 (276)
Q Consensus 160 ~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~----~~~i~~~l~~~D~~iq~ralell~~l~~~~---- 231 (276)
..+.+.+.+.+...|.-++.++..++...+.....| ...+..+++|.|.++|..|+|++..++...
T Consensus 218 ------~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 218 ------ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp ------HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred ------HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 222333345566788889999999998887655444 455556778999999999999998988643
Q ss_pred ----hHHHHHHHHHHHh
Q psy16364 232 ----TLMEIVKKLMVHM 244 (276)
Q Consensus 232 ----n~~~iv~~l~~~l 244 (276)
.+..+++.+++.+
T Consensus 292 ~~~~~~~~l~p~ll~~l 308 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGM 308 (852)
T ss_dssp HHTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 3345555555555
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.74 E-value=0.0015 Score=60.72 Aligned_cols=241 Identities=7% Similarity=0.035 Sum_probs=129.8
Q ss_pred ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhh
Q psy16364 8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 80 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~ 80 (276)
.|+.-..-++.+.++|.++|+.+|..|+..+..++..+.. ...++.|++.|....+.+.+......+..++..
T Consensus 11 ~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3445456688899999999999999999999999865332 257888888887664446777777767766542
Q ss_pred cCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhH-----HHHHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364 81 NNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVR-----AFAVAQMSSLLASPSPPLSQPSSRMAEMM 155 (276)
Q Consensus 81 ~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~~~~~~L 155 (276)
++.+-..-..=.+..+++++......+......-+..+....+..+ ..++..+..++.... .++.
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~----------~~~~ 160 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VKFL 160 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC----------HHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC----------HHHH
Confidence 1100000000013344444433221112223344444443322222 224555566665421 2222
Q ss_pred HHhhhccccchhhhccc-----------------------cCCCc-hHHHHHHHHHHHHhhhCccchH-----HHHHHHH
Q psy16364 156 FDEYSDRSSKIFNIKFS-----------------------SRMPN-HMKYLGLLAMSKILKTHPKSVQ-----SHRDLIM 206 (276)
Q Consensus 156 ~~~~~~~~~~~ilGef~-----------------------~~~~~-n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~ 206 (276)
..++ .+++.+. ...+. ..++-+..++..+.. .+.... ...+.++
T Consensus 161 ~~~~------~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 161 AITT------DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALG 233 (529)
T ss_dssp HHHH------HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHH
T ss_pred HHHH------HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHH
Confidence 2222 1222211 11111 122222333333332 222211 2356677
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 207 QCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 207 ~~l~~~D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
..+++.+.++++.|+..+..++.. .....+++.|++.|...+ ++.|...+..+..++..
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence 788889999999999998777643 234577888888776554 58888888777777664
No 22
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.73 E-value=0.0022 Score=51.95 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=104.3
Q ss_pred hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChh
Q psy16364 11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 90 (276)
Q Consensus 11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~ 90 (276)
.-....+.++++|+|+|+.+|..|+..+..+-.+. .++.|++.|...++ ..|...+..+..+.. +
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~~~~~-~vr~~a~~~L~~~~~----------~ 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER----AVEPLIKALKDEDA-WVRRAAADALGQIGD----------E 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG----GHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------G
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChh----HHHHHHHHHcCCCH-HHHHHHHHHHHhhCC----------H
Confidence 34577889999999999999999999999887643 34556666653332 555544443332221 0
Q ss_pred hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhc
Q psy16364 91 WYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIK 170 (276)
Q Consensus 91 W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGe 170 (276)
-.+..+.+.+.- . .+.+|..++..+..+- . ++.+ -.+-+
T Consensus 76 ~~~~~L~~~l~d---~---------------~~~vr~~a~~aL~~~~-~------------~~~~----------~~L~~ 114 (201)
T 3ltj_A 76 RAVEPLIKALKD---E---------------DGWVRQSAAVALGQIG-D------------ERAV----------EPLIK 114 (201)
T ss_dssp GGHHHHHHHTTC---S---------------SHHHHHHHHHHHHHHC-C------------GGGH----------HHHHH
T ss_pred HHHHHHHHHHcC---C---------------CHHHHHHHHHHHHHhC-c------------HHHH----------HHHHH
Confidence 112233333321 1 1223444444443321 0 1111 11222
Q ss_pred cccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCc
Q psy16364 171 FSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGT 250 (276)
Q Consensus 171 f~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~ 250 (276)
++.+.+...|.-+..++.++.. ++....+...++|+|..+|..|.+-+-.+-++ ..++.|...+...+ +
T Consensus 115 ~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----~~~~~L~~~l~d~~-~ 183 (201)
T 3ltj_A 115 ALKDEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE----RVRAAMEKLAETGT-G 183 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----HHHHHHHHHHHHCC-H
T ss_pred HHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch----hHHHHHHHHHhCCC-H
Confidence 3344445566666666655532 23456677888999999999999999666443 23444444444444 4
Q ss_pred hHHHHHHHHHHHH
Q psy16364 251 MYRDELLSKVIDI 263 (276)
Q Consensus 251 ~~~~~l~~~i~~~ 263 (276)
..|...+..+..+
T Consensus 184 ~vr~~A~~aL~~l 196 (201)
T 3ltj_A 184 FARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777766655543
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.71 E-value=0.003 Score=59.21 Aligned_cols=242 Identities=12% Similarity=0.089 Sum_probs=133.8
Q ss_pred HhHHHHHhhhcCC-ChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC-Cc
Q psy16364 14 SHRDLIMQCLDDK-DESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN-YQ 84 (276)
Q Consensus 14 ~~~~~I~~~L~d~-D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~-y~ 84 (276)
..++.++++|.++ |+.++..|+..+..++... +.. ..++.|++.|...+ ...|...+..+..++..+. ++
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccch
Confidence 5688899999997 8999999999999998743 222 34678888777544 3778777777777764200 00
Q ss_pred cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-hh----hHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRV-SA----VRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~-~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
-..-..=.+..+++++.-....+.......+..+.... +. ....++..+..++... ..++...++
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~----------d~~v~~~a~ 278 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM----------DTETLVDAC 278 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC----------CHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC----------CHHHHHHHH
Confidence 00000001233344333211011111111222222110 10 0011222333333221 022333333
Q ss_pred -----------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHH
Q psy16364 160 -----------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIR 217 (276)
Q Consensus 160 -----------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq 217 (276)
.+.++.-.+-+++...+...+.-++.++..++..++... ......++.+|++++..+|
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr 358 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK 358 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHH
Confidence 011122233344444444566667777777776544322 2346678889999999999
Q ss_pred HHHHHHHHhcCC--cchHHH-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 218 LRALDLLYGMVS--KKTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 218 ~ralell~~l~~--~~n~~~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
..|+..+..++. .+..+. +++.|++.|...+ ...|...+..+..++...
T Consensus 359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcC
Confidence 999999988874 344443 4556777776555 589999999998888753
No 24
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.68 E-value=0.0022 Score=52.37 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=103.0
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHHH
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMT 94 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v~ 94 (276)
..+.+++.|.|+|+.+|..|+..+..+-.+ ..++.|++.|...+ ...|...+..+..+.. +-.+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~----~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~----------~~~~~ 84 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVEPLIKALKDED-AWVRRAAADALGQIGD----------ERAVE 84 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----GGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC----------GGGHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC----------HHHHH
Confidence 367788899999999999999999988764 34566666665443 3556554444443221 11223
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccC
Q psy16364 95 VLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSR 174 (276)
Q Consensus 95 ~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~ 174 (276)
.+++++.- . .+.+|..++..+..+- . ++.+ -.+-+++.+
T Consensus 85 ~L~~~l~~---~---------------~~~vr~~a~~aL~~~~-~------------~~~~----------~~L~~~l~d 123 (211)
T 3ltm_A 85 PLIKALKD---E---------------DGWVRQSAAVALGQIG-D------------ERAV----------EPLIKALKD 123 (211)
T ss_dssp HHHHHTTC---S---------------SHHHHHHHHHHHHHHC-C------------GGGH----------HHHHHHTTC
T ss_pred HHHHHHcC---C---------------CHHHHHHHHHHHHHhC-c------------HHHH----------HHHHHHHhC
Confidence 33333321 1 1223333444333321 0 0111 112223344
Q ss_pred CCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHH
Q psy16364 175 MPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRD 254 (276)
Q Consensus 175 ~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~ 254 (276)
.+...|.-+..+|.++.. ++....+...++|+|..+|..|.+-+-.+.+ ...++.|...+...+ +..|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~-~~vr~ 192 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----ERVRAAMEKLAETGT-GFARK 192 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HHHHHHHHHHHHHCC-HHHHH
T ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hhHHHHHHHHHhCCC-HHHHH
Confidence 445566666666655522 2345667778889999999999999866644 234444444444444 57888
Q ss_pred HHHHHHHHHhccC
Q psy16364 255 ELLSKVIDICSQN 267 (276)
Q Consensus 255 ~l~~~i~~~~~~~ 267 (276)
.-...+..+....
T Consensus 193 ~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 193 VAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHhcCCCC
Confidence 8777777666553
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.66 E-value=0.0018 Score=62.43 Aligned_cols=245 Identities=8% Similarity=0.050 Sum_probs=133.7
Q ss_pred hhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc
Q psy16364 9 PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 81 (276)
Q Consensus 9 P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~ 81 (276)
+++-..-++.++++|.++|+.+|..|+..+..++..... ...++.|++.|....+.+.+...+..+..++..+
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 333345688899999999999999999999999875432 2568888888876645577777777777665421
Q ss_pred CCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhH-----HHHHHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364 82 NYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVR-----AFAVAQMSSLLASPSPPLSQPSSRMAEMM 155 (276)
Q Consensus 82 ~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~~~~~~L 155 (276)
+.+- .... =.+..+++++.-....+......-+..+....+..+ .-++..+..++...+ .++.
T Consensus 89 ~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------~~~~ 157 (644)
T 2z6h_A 89 EGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VKFL 157 (644)
T ss_dssp HHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC----------HHHH
T ss_pred hhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC----------HHHH
Confidence 1100 0000 123344444433211112223344444443322211 124455555555421 1222
Q ss_pred HHhh-------h----------ccccchhhhccccCCC-chHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCC
Q psy16364 156 FDEY-------S----------DRSSKIFNIKFSSRMP-NHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDK 212 (276)
Q Consensus 156 ~~~~-------~----------~~~~~~ilGef~~~~~-~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~ 212 (276)
..++ . ..++.-.+-+++...+ ...+.-++.++..+.. .+.... .....++..+++.
T Consensus 158 ~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~ 236 (644)
T 2z6h_A 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP 236 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcC
Confidence 2111 0 0011111222222211 1233334444444442 222221 2356677788899
Q ss_pred CHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 213 DESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 213 D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+.++|+.|+..+..++.. ..++.+++.|+..|...+ +..|...+..+..++..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN 293 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 999999999999888753 234577777887776555 58888888888777764
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.61 E-value=0.0031 Score=52.65 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=103.3
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
.-++.++++|.++++.++..|+..+..++.. ++... .++.|++.|...+ ...|...+..+..++..+
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~----- 127 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG----- 127 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSC-----
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCC-----
Confidence 3567889999999999999999999999863 22222 5777887777644 366766666666665421
Q ss_pred CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364 87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK 165 (276)
Q Consensus 87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 165 (276)
+-....+.+ ..+...+.+++.. .+.++..+...+..+.... ++... .+.+.++.
T Consensus 128 ---~~~~~~~~~----------~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----------~~~~~-~~~~~~~i 182 (252)
T 4db8_A 128 ---NEQIQAVID----------AGALPALVQLLSSPNEQILQEALWALSNIASGG-----------NEQIQ-AVIDAGAL 182 (252)
T ss_dssp ---HHHHHHHHH----------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-----------HHHHH-HHHHTTCH
T ss_pred ---chHHHHHHH----------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-----------hHHHH-HHHHCCCH
Confidence 100000000 0112222222211 1223334444444432210 00000 01112222
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
-.+-+.+...+..++.-++.+|..++..++.... ...+.+...+++.|.++|+.|...+..+++
T Consensus 183 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 3444555555566677777777777654443221 245667888999999999999999977764
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.57 E-value=0.00084 Score=55.82 Aligned_cols=184 Identities=14% Similarity=0.177 Sum_probs=104.0
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC-C-cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK-K-TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~-n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
..++.++++|.++|+.++..|+..+..++.. . +.. ..++.|++.|...+ ...+...+..+..++..
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~------ 116 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASG------ 116 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC------
Confidence 3678899999999999999999999999865 2 222 25777777776544 36666666666666631
Q ss_pred CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364 87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR-VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK 165 (276)
Q Consensus 87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 165 (276)
+.. ....+.+ ......+.+++.. .+.++..+...+..+.... +.... ...+.++.
T Consensus 117 -~~~-~~~~~~~----------~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-----------~~~~~-~~~~~~~i 172 (252)
T 4hxt_A 117 -PDE-AIKAIVD----------AGGVEVLVKLLTSTDSEVQKEAARALANIASGP-----------DEAIK-AIVDAGGV 172 (252)
T ss_dssp -CHH-HHHHHHH----------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----------HHHHH-HHHHTTHH
T ss_pred -CHH-HHHHHHH----------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-----------HHHHH-HHHHCcCH
Confidence 001 1111100 0112222222221 1234444444444442210 00000 00011222
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~ 228 (276)
-.+-+++.+.+...+.-++.++..++..++.... ...+.+.+.+++.|.++|..|+..+..++
T Consensus 173 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 173 EVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 4444555555566777777777777764443222 24567888999999999999999997665
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.57 E-value=0.0048 Score=61.09 Aligned_cols=242 Identities=7% Similarity=0.027 Sum_probs=134.7
Q ss_pred HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCcc
Q psy16364 13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-------LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQY 85 (276)
Q Consensus 13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-------~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~ 85 (276)
..-++.++.+|.++|+.||..|+..+..++.... ...+++.|++.|....+.+.|...+..+..++...+..-
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 4667889999999999999999999999986432 235788888888766455777777777776554211000
Q ss_pred CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhHHhh-
Q psy16364 86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMFDEY- 159 (276)
Q Consensus 86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~- 159 (276)
..-..=.+..+++++.-....+......-+..+....+..+. -++..+..++...+ .++...++
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~----------~~v~~~a~~ 298 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------VKFLAITTD 298 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC----------HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC----------HHHHHHHHH
Confidence 000001234455555432222223334445555543333222 24445556655421 22222221
Q ss_pred ----------------hccccchhhhccccCCCc-hHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHH
Q psy16364 160 ----------------SDRSSKIFNIKFSSRMPN-HMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIR 217 (276)
Q Consensus 160 ----------------~~~~~~~ilGef~~~~~~-n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq 217 (276)
...++.-.+-+++...+. ..+..+..++..++. .+.... .....++..|.+.+.+++
T Consensus 299 aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~ 377 (780)
T 2z6g_A 299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLV 377 (780)
T ss_dssp HHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHH
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHH
Confidence 000011111111111111 122233344444443 222211 234667778899999999
Q ss_pred HHHHHHHHhcCCcc----hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 218 LRALDLLYGMVSKK----TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 218 ~ralell~~l~~~~----n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
+.|+..+..++... ....+++.|+..|...+ ...|...+..+..++..
T Consensus 378 ~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d-~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC
Confidence 99999998776432 35678888888776655 58888888888887764
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.51 E-value=0.0041 Score=58.14 Aligned_cols=216 Identities=11% Similarity=0.096 Sum_probs=122.5
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc-HH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-LM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT 87 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n-~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~ 87 (276)
.++.++.+|.++++.++..|+..+..++.... .+ ..++.|++.|....+...+...+..+..+|.. . +
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~----~-~ 235 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG----K-P 235 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS----S-S
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC----C-C
Confidence 67888999999999999999999999985422 11 24677888875444457777777777777752 1 2
Q ss_pred Chhh-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhcc
Q psy16364 88 NFEW-----YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDR 162 (276)
Q Consensus 88 ~~~W-----~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (276)
...+ .+..+++++.. . ..++ +..+...+..+.... +.... .+.+.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~---~-~~~v--------------~~~a~~aL~~l~~~~-----------~~~~~-~~~~~ 285 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHS---N-DEEV--------------LTDACWALSYLSDGT-----------NDKIQ-AVIEA 285 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTC---C-CHHH--------------HHHHHHHHHHHTSSC-----------HHHHH-HHHHT
T ss_pred CCcHHHHHHHHHHHHHHHCC---C-CHHH--------------HHHHHHHHHHHHcCC-----------HHHHH-HHHHc
Confidence 2222 22333333321 1 1222 222332333222110 00000 00011
Q ss_pred ccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC--cchHH
Q psy16364 163 SSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDK-DESIRLRALDLLYGMVS--KKTLM 234 (276)
Q Consensus 163 ~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~-D~~iq~ralell~~l~~--~~n~~ 234 (276)
++.-.+-+.+...+..++.-++.++..++...+... ......++..|.++ +..+|+.|+-.+..++. .+.+.
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 111233333344444455555555555554333211 12356677888888 99999999999977764 33343
Q ss_pred HH-----HHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 235 EI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 235 ~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
.+ ++.|+..|...+ ...|.+.+..+..++..
T Consensus 366 ~~~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 366 AVINAGIIGPLVNLLQTAE-FDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcC
Confidence 33 456666666555 58999998888888875
No 30
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.48 E-value=0.01 Score=58.39 Aligned_cols=196 Identities=9% Similarity=0.075 Sum_probs=114.3
Q ss_pred ChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC----CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC
Q psy16364 8 HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY 83 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~----~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y 83 (276)
.++.....++.++++|.++++.||..+...+..++.. ..|.++++.|+..+....+...|...+..+..+++.
T Consensus 89 ~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~--- 165 (861)
T 2bpt_A 89 SPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES--- 165 (861)
T ss_dssp CHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc---
Confidence 3444556678889999999999999999998888653 478899999998887652336666666655566652
Q ss_pred ccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhh
Q psy16364 84 QYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR---VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYS 160 (276)
Q Consensus 84 ~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~ 160 (276)
+.+... .. ......+...+...+.. .+.+|..+.+.+..+++.... +.......+.+ .
T Consensus 166 -~~~~~~-----------~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~~~~~l---l- 226 (861)
T 2bpt_A 166 -ADPQSQ-----------AL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN--NMEREGERNYL---M- 226 (861)
T ss_dssp -SSTTSS-----------TT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH--HHTSHHHHHHH---H-
T ss_pred -CChhhh-----------HH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH--HccChhHHHHH---H-
Confidence 221100 00 00112222222222221 233454455554444321100 00000000111 1
Q ss_pred ccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHH-----HHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 161 DRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSH-----RDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 161 ~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~-----~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
..+.+.+.+.+...|-.++.++..++...+.....| ...+..++.+.|.++|..|++++..++..
T Consensus 227 -----~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 227 -----QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp -----HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 223344555666788888888888888776554444 34455578899999999999999777653
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.43 E-value=0.01 Score=55.54 Aligned_cols=222 Identities=12% Similarity=0.110 Sum_probs=120.5
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC---cHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK---TLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~---n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
-++.+++.|+..|+..+..|..-+-.+.+.+ ++.. +||.|++.|...+....+.+....+..+++. .
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-----~ 132 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----T 132 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-----C
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----C
Confidence 3788899999999999999999888876542 2333 5899999998776667777777777777641 1
Q ss_pred CChhh------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhhh
Q psy16364 87 TNFEW------YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEMM 155 (276)
Q Consensus 87 ~~~~W------~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~L 155 (276)
++..- -+..+++++.-....+......-+.++....+..|... +..+..++..... .......+
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~-----~~~~~~~~ 207 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL-----STLACGYL 207 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG-----GGSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccc-----hhhhHHHH
Confidence 00000 12334444432111111111222223322222222221 1222222222110 00001233
Q ss_pred HHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch--H
Q psy16364 156 FDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT--L 233 (276)
Q Consensus 156 ~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n--~ 233 (276)
+.++ |.++.......+.... ..+......+..+|++.|.+++..|+..+..++...+ .
T Consensus 208 ~~a~------~~L~nl~~~~~~~~~~--------------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 208 RNLT------WTLSNLCRNKNPAPPL--------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHH------HHHHHHHCCCSSCCCH--------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHH------HHHHHHhhcccchhHH--------------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH
Confidence 3333 4444332222211111 1123445667788899999999999999988876432 2
Q ss_pred HH-----HHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 234 ME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 234 ~~-----iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
+. +++.|+..|...+ ...+...+..+..++..+
T Consensus 268 ~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 268 EMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp HHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCC
Confidence 22 3566777776665 478888888887776543
No 32
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.36 E-value=0.0072 Score=56.58 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=30.4
Q ss_pred hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCc----HHHHHHHHHHhhh
Q psy16364 11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT----LMEIVKKLMVHMD 59 (276)
Q Consensus 11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n----~~~iv~~L~~~L~ 59 (276)
......+.+..++.|+|+.||..|+..+..++..-. ...++|.|...+.
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 213 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS 213 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhc
Confidence 345666667777778888888888877777764321 2345555554443
No 33
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.31 E-value=0.015 Score=48.62 Aligned_cols=172 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred HHHhhhcCCChhHHhhHHHHHHhhcCC------CcHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHHhhhcCCccCCChh
Q psy16364 18 LIMQCLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMD-KAEGTMYRDELLSKVIDICSQNNYQYITNFE 90 (276)
Q Consensus 18 ~I~~~L~d~D~sIr~~aL~Ll~~l~~~------~n~~~iv~~L~~~L~-~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~ 90 (276)
.+.+.++|+|...|+.|+.-+..+++. .++..+++.|.+.+. ..+ ...|...+..+..++. ...+.+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~----~l~~~~~ 93 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN-VVLVAMAGKCLALLAK----GLAKRFS 93 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHH----HHGGGGH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHH----HHhhhHH
Confidence 467789999999999999999988752 356788888887774 433 2555555555555554 2222222
Q ss_pred hHHHHHHH-HHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhh
Q psy16364 91 WYMTVLVE-LTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNI 169 (276)
Q Consensus 91 W~v~~ll~-ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilG 169 (276)
=|...++. ++...++. .+.+|..+...+..+.++.. ...++ -.+.
T Consensus 94 ~~~~~ilp~ll~~l~d~---------------~~~vr~~a~~aL~~~~~~~~---------~~~ll----------~~l~ 139 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEK---------------KPNVVTALREAIDAIYASTS---------LEAQQ----------ESIV 139 (242)
T ss_dssp HHHHHHHHHHHHGGGCC---------------CHHHHHHHHHHHHHHHTTSC---------HHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHHHHcCC---------HHHHH----------HHHH
Confidence 22222222 22222221 12344445555555554321 12232 2234
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhC-cc-----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy16364 170 KFSSRMPNHMKYLGLLAMSKILKTH-PK-----SVQSHRDLIMQCLDDKDESIRLRALDLLYGMV 228 (276)
Q Consensus 170 ef~~~~~~n~ryl~L~~l~~l~~~~-~~-----~~~~~~~~i~~~l~~~D~~iq~ralell~~l~ 228 (276)
+++.+.....|.-.+..+..++... |. ..+.....+..+|+|++.++|..|.+.+..++
T Consensus 140 ~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 4556666678888888888866543 32 34566778888999999999999999985554
No 34
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.25 E-value=0.01 Score=58.35 Aligned_cols=97 Identities=9% Similarity=0.104 Sum_probs=63.7
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhC------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chH
Q psy16364 170 KFSSRMPNHMKYLGLLAMSKILKTH------PKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----------KTL 233 (276)
Q Consensus 170 ef~~~~~~n~ryl~L~~l~~l~~~~------~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~----------~n~ 233 (276)
+.+.+.....|.-++.++.+++... ....+.....++.+++|. ..+|..|+.-+..++.. .-+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3334445567776666666666542 334566777788888886 88999888877555432 345
Q ss_pred HHHHHHHHHHhhhcCC-chHHHHHHHHHHHHhccC
Q psy16364 234 MEIVKKLMVHMDKAEG-TMYRDELLSKVIDICSQN 267 (276)
Q Consensus 234 ~~iv~~l~~~l~~~~~-~~~~~~l~~~i~~~~~~~ 267 (276)
..+++.|++-+...+. ...|......+..+++..
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 6777777777764432 478888888777777654
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.21 E-value=0.047 Score=51.19 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=134.9
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC-Cc--HH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCc--
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK-KT--LM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQ-- 84 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~-~n--~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~-- 84 (276)
-++.+++.++.+|+..+..|+.-+-.+.+. +| +. .+||.|++.|...+....+.+....+..++..+...
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999999999998887643 22 32 268999999987776678877777777776521000
Q ss_pred cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHH-----HHHHHHhhcCCCCCCCCCCchhhhhhHHhh
Q psy16364 85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFA-----VAQMSSLLASPSPPLSQPSSRMAEMMFDEY 159 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~ 159 (276)
-+... =-+..+++++.-....+......-+..+....+..|... +..+..++..... ......+++.++
T Consensus 157 ~vv~~-Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~-----~~~~~~~~~~a~ 230 (529)
T 3tpo_A 157 AVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDL-----STLACGYLRNLT 230 (529)
T ss_dssp HHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCG-----GGSCHHHHHHHH
T ss_pred HHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccch-----hHhHHHHHHHHH
Confidence 00000 013344444433222222222333444443334444332 2333444433210 000123455555
Q ss_pred hccccchhhhcccc-----------------------CCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcC
Q psy16364 160 SDRSSKIFNIKFSS-----------------------RMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDD 211 (276)
Q Consensus 160 ~~~~~~~ilGef~~-----------------------~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~ 211 (276)
|.++.... +.+...+.-+..++..++....... ......++.+|.+
T Consensus 231 ------~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~ 304 (529)
T 3tpo_A 231 ------WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 304 (529)
T ss_dssp ------HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred ------HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence 55554433 2233334445556666555433211 1235667889999
Q ss_pred CCHHHHHHHHHHHHhcCCc--chHHHHH-----HHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 212 KDESIRLRALDLLYGMVSK--KTLMEIV-----KKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 212 ~D~~iq~ralell~~l~~~--~n~~~iv-----~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
++..+|..|+..+..++.. .+...++ +.|...|...+ +..|.+.+..+..+|..
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAG 365 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcc
Confidence 9999999999999878643 3333333 33555554444 58999999888888764
No 36
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.19 E-value=0.03 Score=50.54 Aligned_cols=190 Identities=9% Similarity=0.139 Sum_probs=111.5
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC----CcHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHhhhcCCc
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAE-GTMYRDELLSKVIDICSQNNYQ 84 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~----~n~~~iv~~L~~~L~~~~-~~~~r~~li~~I~~~~~~~~y~ 84 (276)
+.-+..++.++++|.++++.+ ..+...+..++.. ..|.++++.|+..+.... +...|.-.+..+..+++...+.
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch
Confidence 334456677889999999999 8888888888753 378889999998887651 3366666666666666631111
Q ss_pred cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHH-hhh
Q psy16364 85 YITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR---VSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFD-EYS 160 (276)
Q Consensus 85 ~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~-~~~ 160 (276)
.. .+ ....+...+...+.. .+.+|..++..+..+++.... +.. ...... ..
T Consensus 165 ~~--~~----------------~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~--~~~----~~~~~~~l~- 219 (462)
T 1ibr_B 165 QL--QD----------------KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA--NFD----KESERHFIM- 219 (462)
T ss_dssp GT--GG----------------GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH--HHT----SHHHHHHHH-
T ss_pred hh--Hh----------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH--hhh----hhHHHHHHH-
Confidence 00 01 112223333333322 134455555555554432100 000 000011 11
Q ss_pred ccccchhhhccccCCCchHHHHHHHHHHHHhhhCccc----hH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 161 DRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKS----VQ-SHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 161 ~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~----~~-~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
..+.+.....+...|--++.++..++...+.. .+ ...+.++.++++.+.++|..|++++..++..
T Consensus 220 -----~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 220 -----QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp -----HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 23344455556667777788888888776543 33 5566677788999999999999998777653
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.17 E-value=0.025 Score=56.14 Aligned_cols=235 Identities=14% Similarity=0.094 Sum_probs=130.9
Q ss_pred HHHhHHHHHhhhcCC--ChhHHhhHHHHHHhhcCCCcH-------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC
Q psy16364 12 VQSHRDLIMQCLDDK--DESIRLRALDLLYGMVSKKTL-------MEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 82 (276)
Q Consensus 12 v~~~~~~I~~~L~d~--D~sIr~~aL~Ll~~l~~~~n~-------~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~ 82 (276)
++.-.+.+.++|.++ |..++..|+..|..++...++ ...+|.|+..|+..+. ......+..+..++...+
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~-~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ-SCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh-HHHHHHHHHHHHHcCCch
Confidence 456677888999988 999999999999999876443 2467888888875443 566666777777765211
Q ss_pred C-----------ccCC---C-----------hhh--------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHH-
Q psy16364 83 Y-----------QYIT---N-----------FEW--------YMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAF- 128 (276)
Q Consensus 83 y-----------~~~~---~-----------~~W--------~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~- 128 (276)
- +|.. + ..| -+..+.+++.-....+..+...-+..+.. .++.|..
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 0 0000 0 000 12333333332111111222222333321 1222221
Q ss_pred ----HHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccc-------------------------cCCCc-h
Q psy16364 129 ----AVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFS-------------------------SRMPN-H 178 (276)
Q Consensus 129 ----~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~-------------------------~~~~~-n 178 (276)
++..+..++.... ....+.|+ |.++..+ ....+ -
T Consensus 533 v~~Gaip~Lv~LL~s~~----------~~~k~~Aa------~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l 596 (810)
T 3now_A 533 VQEGGVKALLRMALEGT----------EKGKRHAT------QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596 (810)
T ss_dssp HHTTHHHHHHHHHHSSC----------HHHHHHHH------HHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred HHCCCHHHHHHHHccCC----------HHHHHHHH------HHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence 2233334443211 22333344 5444432 21111 1
Q ss_pred HHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchH-HHH------HHHHHHHhhh
Q psy16364 179 MKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTL-MEI------VKKLMVHMDK 246 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~-~~i------v~~l~~~l~~ 246 (276)
.++-++.+|..++...++... ...+.++.+|.+.+..+|+-|.+.+..|+..+.. ..+ ++-|+..+..
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 234567777777765443221 3456788899999999999999999888765333 332 3344444444
Q ss_pred cCCchHHHHHHHHHHHHhc
Q psy16364 247 AEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 247 ~~~~~~~~~l~~~i~~~~~ 265 (276)
. +...|.+-+..+..++.
T Consensus 677 ~-d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 677 E-DEETATACAGALAIITS 694 (810)
T ss_dssp S-SHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHhC
Confidence 4 45889888888888876
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.07 E-value=0.038 Score=54.57 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=120.7
Q ss_pred HHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCC-chhHHHHHHHHHHHhhhcCCc
Q psy16364 13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEG-TMYRDELLSKVIDICSQNNYQ 84 (276)
Q Consensus 13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~-~~~r~~li~~I~~~~~~~~y~ 84 (276)
...++.++++|.++|+.+|..|+..+..++... +.. ..++.|++.|..... ...+...+..+..++..
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~---- 473 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR---- 473 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS----
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc----
Confidence 456777888888889999999998888887643 221 246777777765332 25666666666666531
Q ss_pred cCCCh---hh------HHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCc
Q psy16364 85 YITNF---EW------YMTVLVELTRMEGT-RHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSS 149 (276)
Q Consensus 85 ~~~~~---~W------~v~~ll~ll~~~~~-~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~ 149 (276)
.++. .| .+..+++++..... .+......-+.++.. .+..+. .++..+..++...
T Consensus 474 -~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~--------- 542 (780)
T 2z6g_A 474 -HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRA--------- 542 (780)
T ss_dssp -STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHH---------
T ss_pred -CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhc---------
Confidence 1111 11 13344444432211 111222223333322 111111 1233333333221
Q ss_pred hhhhhhHHhhhccccchhhhc--cccCCC-chHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHH
Q psy16364 150 RMAEMMFDEYSDRSSKIFNIK--FSSRMP-NHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRAL 221 (276)
Q Consensus 150 ~~~~~L~~~~~~~~~~~ilGe--f~~~~~-~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ral 221 (276)
..++-++++ |.+|. |..... ..++..++.+|..++. ++... ......++.+|.+.+..+|+.|.
T Consensus 543 -~~~~~~~aa------~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 614 (780)
T 2z6g_A 543 -HQDTQRRTS------MGGTQQQFVEGVRMEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614 (780)
T ss_dssp -HHHHHHTTC------------CCSTTCCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH
T ss_pred -chhHHHHHh------hccccchhhcccChHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH
Confidence 123334444 87775 443321 2355566677777653 22211 12356778899999999999999
Q ss_pred HHHHhcCCcchHHHHHHH-----HHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 222 DLLYGMVSKKTLMEIVKK-----LMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 222 ell~~l~~~~n~~~iv~~-----l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
..+..++..+..+..+.+ .+..|....++..|..-+..+..+++.
T Consensus 615 ~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 615 GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp HHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 988777755555444443 222333334457777777777776664
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.98 E-value=0.014 Score=47.49 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=90.6
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHH
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYM 93 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v 93 (276)
.-.+.+.++|.|+|+.||..|+..+..+.++.. ++.|++.|...++ ..|...+..+..+.. +-.+
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~----~~~L~~~l~~~~~-~vr~~a~~aL~~~~~----------~~~~ 114 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAV 114 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHH
Confidence 346788899999999999999999999876543 4555555544333 555544444433221 1112
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhcccc
Q psy16364 94 TVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSS 173 (276)
Q Consensus 94 ~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~ 173 (276)
..+.+++. + ..+.+|..++..+..+ .. ++.+ ..+-+++.
T Consensus 115 ~~L~~~l~---d---------------~~~~vr~~a~~aL~~~-~~------------~~~~----------~~L~~~l~ 153 (211)
T 3ltm_A 115 EPLIKALK---D---------------EDWFVRIAAAFALGEI-GD------------ERAV----------EPLIKALK 153 (211)
T ss_dssp HHHHHHTT---C---------------SSHHHHHHHHHHHHHH-CC------------GGGH----------HHHHHHTT
T ss_pred HHHHHHHh---C---------------CCHHHHHHHHHHHHHc-CC------------HHHH----------HHHHHHHc
Confidence 23333331 1 1223444455444443 11 1111 22334445
Q ss_pred CCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 174 RMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 174 ~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
+.+..+|.-+..+|.++.. +.....+...++|+|..+|+.|.+.|..+.+.
T Consensus 154 d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 5566677777777776632 45667788889999999999999999766544
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.95 E-value=0.048 Score=50.86 Aligned_cols=232 Identities=14% Similarity=0.141 Sum_probs=116.3
Q ss_pred HHhHHHHHhhhcCCChhHHhhHHHHHHhhcC----CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCC
Q psy16364 13 QSHRDLIMQCLDDKDESIRLRALDLLYGMVS----KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITN 88 (276)
Q Consensus 13 ~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~----~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~ 88 (276)
.+..+.+..++ |++..||..+...+..++. +..+..+++.|...+. .++...|......+..++. ...+.
T Consensus 48 ~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~----~~~~~ 121 (588)
T 1b3u_A 48 SELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISH----EHSPS 121 (588)
T ss_dssp HTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHT----TSCHH
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHH----HCCHH
Confidence 44556666666 6677888888888877663 2334556555544332 2333666666666666654 22211
Q ss_pred hhh--HHHHHHHHHH---------------hcCCcchHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhcCCCCCCCC
Q psy16364 89 FEW--YMTVLVELTR---------------MEGTRHGALVAAQMMDVAI-----RVSAVRAFAVAQMSSLLASPSPPLSQ 146 (276)
Q Consensus 89 ~~W--~v~~ll~ll~---------------~~~~~~~~~i~~~l~~vi~-----~~~~~~~~~~~~~~~ll~~~~~~~~~ 146 (276)
..| +...+.++.. ......+......+...+. ..+.+|..+...+..+.+...
T Consensus 122 ~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~----- 196 (588)
T 1b3u_A 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----- 196 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 111 1122222111 0001111122222222221 123455555555554443210
Q ss_pred CCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCcc--chHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 147 PSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK--SVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 147 ~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~--~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
......... -.+-+++.+.+...|..++.++..++...+. ..+.....+...++|++..+|+.|.+.+
T Consensus 197 ----~~~~~~~l~------~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l 266 (588)
T 1b3u_A 197 ----LDNVKSEII------PMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266 (588)
T ss_dssp ----HHHHHHTHH------HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred ----HHhHHHHHH------HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 000001111 1222333445556777778888887765442 2234456667778899999999999988
Q ss_pred HhcCCc---ch-HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 225 YGMVSK---KT-LMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 225 ~~l~~~---~n-~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
-.++.. +. ...+++.++..+...+ +..|...+..+..+++.
T Consensus 267 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 267 TELQKAVGPEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHHHHHCHHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHH
Confidence 666542 11 2334444444444333 47777777766666653
No 41
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.08 Score=44.79 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=106.3
Q ss_pred HHhhhcCCChhHHhhHHHHHHh-hcC--------CCcHHHHHHHHHHhh-hhcCCchhHHHHHHHHHHHhhhcCCccC-C
Q psy16364 19 IMQCLDDKDESIRLRALDLLYG-MVS--------KKTLMEIVKKLMVHM-DKAEGTMYRDELLSKVIDICSQNNYQYI-T 87 (276)
Q Consensus 19 I~~~L~d~D~sIr~~aL~Ll~~-l~~--------~~n~~~iv~~L~~~L-~~~~~~~~r~~li~~I~~~~~~~~y~~~-~ 87 (276)
+.+.|.+++..-|+.|++-+.. +++ ..++..++..|.+.+ ..... ..+..-+..+..+++ ... +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~----~l~~~ 95 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICD----KLKTP 95 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHH----HHCTT
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHH----hcccc
Confidence 3456789999999999999988 763 235677888888877 33332 445555555555564 333 3
Q ss_pred Ch--hhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccc
Q psy16364 88 NF--EWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSK 165 (276)
Q Consensus 88 ~~--~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 165 (276)
.+ ++....+-.++...++.. ..+.+. +...+..+++..+.... . +....++
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk-~~V~~a--------------a~~al~~i~~~~~~~~~-~-~~l~~ll---------- 148 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKK-PSVIEA--------------IRKALLTICKYYDPLAS-S-GRNEDML---------- 148 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCC-HHHHHH--------------HHHHHHHHHHHSCTTCT-T-CTTHHHH----------
T ss_pred cccHHHHHHHHHHHHHHHcCCC-HHHHHH--------------HHHHHHHHHHHcccccc-C-CcHHHHH----------
Confidence 33 344455555555544432 233222 22222233332211000 0 0012333
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCcc-------ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPK-------SV-QSHRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~-------~~-~~~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
-.+-+++.+.....|.-++.++..++...+. .+ +.....+..++.|.+.++|..|.|-+-.+
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2234555666667888889999998877653 34 66777888899999999999999998554
No 42
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.90 E-value=0.11 Score=53.50 Aligned_cols=255 Identities=11% Similarity=0.096 Sum_probs=133.2
Q ss_pred hHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCC
Q psy16364 11 SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYIT 87 (276)
Q Consensus 11 ~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~ 87 (276)
.+....+.+..+|.|+++.||.+|+..+..++.. .-+..+++.|+..|....+...|...+..+..++..-.-.+.+
T Consensus 172 ~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 251 (1230)
T 1u6g_C 172 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251 (1230)
T ss_dssp THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 3467788889999999999999999999988753 2244578888888866543345655555555555421113333
Q ss_pred ChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhcCCCCC---------------C---CC--
Q psy16364 88 NFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVS-AVRAFAVAQMSSLLASPSPP---------------L---SQ-- 146 (276)
Q Consensus 88 ~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~-~~~~~~~~~~~~ll~~~~~~---------------~---~~-- 146 (276)
-.+=.+..+++.+....+.+.....+.+..++...+ .++++.-.-+-.+++....- . ..
T Consensus 252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~ 331 (1230)
T 1u6g_C 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD 331 (1230)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccc
Confidence 223344555554443222222222222222222221 12222211112222211100 0 00
Q ss_pred ----------CCchhhhhhHHhhhcc-------cc----------chhhhccccCCCchHHHHHHHHHHHHhhhCc----
Q psy16364 147 ----------PSSRMAEMMFDEYSDR-------SS----------KIFNIKFSSRMPNHMKYLGLLAMSKILKTHP---- 195 (276)
Q Consensus 147 ----------~~~~~~~~L~~~~~~~-------~~----------~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~---- 195 (276)
.....+++ +.++.+. .+ .-.+.+++...+.+.|.-++.++..++....
T Consensus 332 ~~~~~~~~~~~~d~~~~v-R~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 410 (1230)
T 1u6g_C 332 DQGSDDEYSDDDDMSWKV-RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS 410 (1230)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--
T ss_pred hhhcccccccccccCHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccc
Confidence 00000111 2222000 00 0112223334456788777777777765311
Q ss_pred -------------------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHhhhcCC-
Q psy16364 196 -------------------KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMDKAEG- 249 (276)
Q Consensus 196 -------------------~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~------~n~~~iv~~l~~~l~~~~~- 249 (276)
...+...+.+...+++++..+|+.|+..+..++.. +.+..+++.+++-|.....
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~ 490 (1230)
T 1u6g_C 411 WLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSS 490 (1230)
T ss_dssp ----------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSC
T ss_pred cccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCc
Confidence 12333444555569999999999999988665432 4567777777777765431
Q ss_pred chHHHHHHHHHHHHhcc
Q psy16364 250 TMYRDELLSKVIDICSQ 266 (276)
Q Consensus 250 ~~~~~~l~~~i~~~~~~ 266 (276)
...|.+.+..+..+++.
T Consensus 491 ~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 491 SNLKIDALSCLYVILCN 507 (1230)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHh
Confidence 37788888888877653
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.87 E-value=0.065 Score=51.41 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=49.7
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC----CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~----~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
-++.++++|.+++..++..++..+..++.. ......++.|++.|...++ +.|......+..++.
T Consensus 225 ~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~-~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 225 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCH-HHHHHHHHHHHHHHc
Confidence 467888999999999999999999999853 2456788999988875543 677766666666654
No 44
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.86 E-value=0.072 Score=52.86 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=128.5
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc--CCc--
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN--NYQ-- 84 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~--~y~-- 84 (276)
...+.++.++.++|+.++..|+..+..++.....+. =++-|...++.. +...|..-+..++++.+.. +..
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~-~~~vr~~Al~~L~kl~s~~~~d~~~~ 368 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSK-NDGIRVRALVGLCKLGSYGGQDAAIR 368 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCC-CHHHHHHHHHHHHHhccccccCcccc
Confidence 567888999999999999999999999987644333 235566655533 3355655555555554311 111
Q ss_pred -cCCC-hhhHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhHH------HHHHHHHHhhcCCCCCCCCCCchhhhh
Q psy16364 85 -YITN-FEWYMTVLVELTRMEG--TRHGALVAAQMMDVAIRVSAVRA------FAVAQMSSLLASPSPPLSQPSSRMAEM 154 (276)
Q Consensus 85 -~~~~-~~W~v~~ll~ll~~~~--~~~~~~i~~~l~~vi~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~~~~~~~ 154 (276)
+... .+=++..+.+++.-.+ ........+-+..+.. .++.+. -++..+..++... .+.+
T Consensus 369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~----------d~~i 437 (810)
T 3now_A 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGG----------NQSC 437 (810)
T ss_dssp SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTT----------CGGG
T ss_pred chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCC----------ChHH
Confidence 1000 1123444555555442 1222223333333322 122221 2444555665432 1356
Q ss_pred hHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhC-c---------------cch--HHHHHHHHHHhcCCCHHH
Q psy16364 155 MFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTH-P---------------KSV--QSHRDLIMQCLDDKDESI 216 (276)
Q Consensus 155 L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~-~---------------~~~--~~~~~~i~~~l~~~D~~i 216 (276)
.+.++ |++|-.....+.+.+.-.+..+.+..... + ..+ ......++.+|+++++++
T Consensus 438 ~~~al------~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~v 511 (810)
T 3now_A 438 LYGVV------TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511 (810)
T ss_dssp HHHHH------HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHH
T ss_pred HHHHH------HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence 67777 77776655333210000011111111100 0 000 123567788999999999
Q ss_pred HHHHHHHHHhcCCc-chHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 217 RLRALDLLYGMVSK-KTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 217 q~ralell~~l~~~-~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
|..|...+..++.. ++...+ ++-|+.-|...+ ...|+.-+..+..+|...
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCC
Confidence 99999999998754 444433 445666666555 478888888888887643
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.81 E-value=0.07 Score=49.21 Aligned_cols=243 Identities=8% Similarity=0.063 Sum_probs=133.8
Q ss_pred HhHHHHHhhhcC-CChhHHhhHHHHHHhhcCCC-cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCC-cc
Q psy16364 14 SHRDLIMQCLDD-KDESIRLRALDLLYGMVSKK-TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNY-QY 85 (276)
Q Consensus 14 ~~~~~I~~~L~d-~D~sIr~~aL~Ll~~l~~~~-n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y-~~ 85 (276)
..++.+++.|.+ +|+.++..|+..+..++... +.. ..++.|++.|...+ ...+...+..+..++..++- .-
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHH
Confidence 467788888864 59999999999999987643 222 25778888887655 37777777777777753110 00
Q ss_pred CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhhhhH----
Q psy16364 86 ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAEMMF---- 156 (276)
Q Consensus 86 ~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~L~---- 156 (276)
..-..=.+..+++++.-...........-+..+....++.+. .++..+..++.+... .....
T Consensus 138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~---------~~~~~~a~~ 208 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY---------EKLLWTTSR 208 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC---------HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh---------HHHHHHHHH
Confidence 000011234455544422111111111122222211111111 122233333322110 00000
Q ss_pred ------------HhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc--cchHHHHHHHHHHhcCCCHHHHHHHHH
Q psy16364 157 ------------DEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP--KSVQSHRDLIMQCLDDKDESIRLRALD 222 (276)
Q Consensus 157 ------------~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~--~~~~~~~~~i~~~l~~~D~~iq~rale 222 (276)
..+.+.++...+.+++...+...+.-++.++..++...+ .........++..|.+.|.++|..|..
T Consensus 209 ~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 288 (529)
T 1jdh_A 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288 (529)
T ss_dssp HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence 011112233445555555555566667777777776543 234566788888999999999999999
Q ss_pred HHHhcCCcc--hHHH-----HHHHHHHHhhhc-CCchHHHHHHHHHHHHhcc
Q psy16364 223 LLYGMVSKK--TLME-----IVKKLMVHMDKA-EGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 223 ll~~l~~~~--n~~~-----iv~~l~~~l~~~-~~~~~~~~l~~~i~~~~~~ 266 (276)
.+..++..+ +.+. .++.|+..|... +++..+...+..+..++..
T Consensus 289 ~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 998887643 4433 356667666553 3257778777777777654
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.77 E-value=0.071 Score=52.37 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=66.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCc-cc----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--------cchHHHHHH
Q psy16364 172 SSRMPNHMKYLGLLAMSKILKTHP-KS----VQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--------KKTLMEIVK 238 (276)
Q Consensus 172 ~~~~~~n~ryl~L~~l~~l~~~~~-~~----~~~~~~~i~~~l~~~D~~iq~ralell~~l~~--------~~n~~~iv~ 238 (276)
+.+.+...|.-++.++..++...+ .. .++....++.+|+|++..+|.+|...+-.++. ...+..+++
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHH
Confidence 344556688888888888876433 32 34456667778899999999999998866653 367888888
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 239 KLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 239 ~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
.|++.+.. + +..|...+..+..+++.
T Consensus 455 ~l~~~l~~-~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 455 CLIEGLSA-E-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHTTS-C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-C-HHHHHHHHHHHHHHHHH
Confidence 88887755 2 57787777777666643
No 47
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.74 E-value=0.086 Score=42.36 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=65.0
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--chHHH---
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLME--- 235 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~~--~n~~~--- 235 (276)
-.+-+++.+.+...+.-+..++..++..++... ....+.++..|+++|..+|..|+..+..++.. ++.+.
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 178 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 334444455555566666666666665443322 23467788899999999999999999888764 33322
Q ss_pred --HHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 236 --IVKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 236 --iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
.++.|.+.+...+ +..|+.-...+..+++
T Consensus 179 ~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 179 AGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 3455666555444 5888888888887775
No 48
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.71 E-value=0.076 Score=54.78 Aligned_cols=221 Identities=11% Similarity=0.146 Sum_probs=120.2
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-------cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYI 86 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-------n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~ 86 (276)
.....+++.+.++|..+|..|++-+....... ....+++.|++.|...+ ...|..-+..+..+++ . .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~----~-~ 79 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVS----K-V 79 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHT----T-S
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH----h-C
Confidence 44667888899999999999988777665432 35678888998887433 3666665555555554 1 1
Q ss_pred CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCC---CCCCCchhhhhhHHhhhccc
Q psy16364 87 TNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPP---LSQPSSRMAEMMFDEYSDRS 163 (276)
Q Consensus 87 ~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~~L~~~~~~~~ 163 (276)
++ +.....+-.++...++.. .. +|..+...+..+......- ........++++-.
T Consensus 80 ~~-~~~~~i~~~Ll~~l~d~~-~~--------------vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~------ 137 (1230)
T 1u6g_C 80 KE-YQVETIVDTLCTNMLSDK-EQ--------------LRDISSIGLKTVIGELPPASSGSALAANVCKKITGR------ 137 (1230)
T ss_dssp CH-HHHHHHHHHHHHHTTCSS-SH--------------HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH------
T ss_pred CH-HHHHHHHHHHHHHhcCCc-HH--------------HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH------
Confidence 12 211111111222222211 11 2222222222222111000 00000001222211
Q ss_pred cchhhhccccCCCchHHHHHHHHHHHHhhhCcc----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---chHHHH
Q psy16364 164 SKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK----SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLMEI 236 (276)
Q Consensus 164 ~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~----~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~---~n~~~i 236 (276)
++.-+.+..+...|.-++.++..++...+. ..+.....++.+|.+++..+|.+|..-+..++.. .-+..+
T Consensus 138 ---L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~ 214 (1230)
T 1u6g_C 138 ---LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214 (1230)
T ss_dssp ---HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTH
T ss_pred ---HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 112111134456788888889888865443 3456667777788999999999999988666543 223456
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 237 VKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
++.|++.|...++...|...+..+..+++
T Consensus 215 l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 215 IEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp HHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 77788877665433556555666655554
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.67 E-value=0.35 Score=47.42 Aligned_cols=66 Identities=9% Similarity=0.061 Sum_probs=49.1
Q ss_pred HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC--------CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVS--------KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~--------~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
+....+.++.+|+|+++.||..|+..+..++. +.....+++.|++.+... ...|......+..++.
T Consensus 406 ~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 34557778889999999999999999988763 256788888888887652 3667666666655554
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.64 E-value=0.066 Score=42.94 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=87.8
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHH
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYM 93 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v 93 (276)
...+.+.++|.|+|+.+|..|+..+..+.++.. ++.|.+.|...++ ..|...+..+..+.. +-.+
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----------~~~~ 109 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAV 109 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHH
Confidence 346788899999999999999999998876543 4555555554332 455544444432221 1122
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhcccc
Q psy16364 94 TVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSS 173 (276)
Q Consensus 94 ~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~ 173 (276)
..+.+++. + ..+.+|..++..+..+ .. ++.+ ..+-+++.
T Consensus 110 ~~L~~~l~---d---------------~~~~vr~~a~~aL~~~-~~------------~~~~----------~~L~~~l~ 148 (201)
T 3ltj_A 110 EPLIKALK---D---------------EDWFVRIAAAFALGEI-GD------------ERAV----------EPLIKALK 148 (201)
T ss_dssp HHHHHHTT---C---------------SSHHHHHHHHHHHHHH-TC------------GGGH----------HHHHHHTT
T ss_pred HHHHHHHc---C---------------CCHHHHHHHHHHHHHh-CC------------HHHH----------HHHHHHHc
Confidence 23333321 1 1123344444444333 11 1111 22333344
Q ss_pred CCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 174 RMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 174 ~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
+.+...|.-++.+|.++. -+.....+...++|+|..+|..|.+.+-.+
T Consensus 149 d~~~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 149 DEDGWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp CSSHHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455567777777666652 245666777888999999999999998555
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.61 E-value=0.26 Score=44.26 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHHhhhCcc-chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-------hHHHHHHHHHHHhhhcC
Q psy16364 177 NHMKYLGLLAMSKILKTHPK-SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK-------TLMEIVKKLMVHMDKAE 248 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~-~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~-------n~~~iv~~l~~~l~~~~ 248 (276)
.+.|..+..++..++...++ ..+.....+...+++++..+|.-|+..+-.++... .+..+++.+++.|...+
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS 421 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788888888888877653 44556777788899999999999999997777532 33567777777776555
Q ss_pred CchHHHHHHHHHHHHhcc
Q psy16364 249 GTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 249 ~~~~~~~l~~~i~~~~~~ 266 (276)
+..|..-+..+..+++.
T Consensus 422 -~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 422 -VVVRDTAAWTVGRICEL 438 (462)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 58998888888888775
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.59 E-value=0.47 Score=44.13 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=120.4
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHH------HHHHHHHhhhhcCCc----hhHHHHHHHHHHHhhhcCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLME------IVKKLMVHMDKAEGT----MYRDELLSKVIDICSQNNY 83 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~------iv~~L~~~L~~~~~~----~~r~~li~~I~~~~~~~~y 83 (276)
-++.++++|.++|..|+..|+..|..++... ..+. .++.|+..|...+.. .+.......+..+|...+
T Consensus 144 aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~- 222 (510)
T 3ul1_B 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN- 222 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS-
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc-
Confidence 4788999999999999999999999998542 3332 356677777654322 233334444555554211
Q ss_pred ccCCChhh---HHHHHHHHHHhcCCcchHHHHHHHHHHHHH----hhhhHH-----HHHHHHHHhhcCCCCCCCCCCchh
Q psy16364 84 QYITNFEW---YMTVLVELTRMEGTRHGALVAAQMMDVAIR----VSAVRA-----FAVAQMSSLLASPSPPLSQPSSRM 151 (276)
Q Consensus 84 ~~~~~~~W---~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~----~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~ 151 (276)
...+... .+..+.+++... ..++...-...+.. .++... -++..+..++...+
T Consensus 223 -~~~~~~~~~~~lp~L~~LL~~~----~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---------- 287 (510)
T 3ul1_B 223 -PAPPLDAVEQILPTLVRLLHHN----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---------- 287 (510)
T ss_dssp -SCCCHHHHHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC----------
T ss_pred -chhHHHHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC----------
Confidence 1112111 122333333221 12222222111111 000000 01222233332211
Q ss_pred hhhhHHhh-----------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHh
Q psy16364 152 AEMMFDEY-----------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCL 209 (276)
Q Consensus 152 ~~~L~~~~-----------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l 209 (276)
.++...++ .+.++.-.+-.++.+.+..+|.-+..++..++..++.... .....++..|
T Consensus 288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL 367 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 367 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Confidence 11111111 1222334455556666667788888888888765543222 2356678899
Q ss_pred cCCCHHHHHHHHHHHHhcCCc---chHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364 210 DDKDESIRLRALDLLYGMVSK---KTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDI 263 (276)
Q Consensus 210 ~~~D~~iq~ralell~~l~~~---~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~ 263 (276)
++.|..+|+.|.-.+..++.. +++..+ ++.|.+-|...+ ...+...+..+..+
T Consensus 368 ~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 368 SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNI 428 (510)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 999999999999888777643 333333 455666665555 46666555544443
No 53
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.30 E-value=0.096 Score=46.80 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=99.0
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhh-cCCc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQ-NNYQ 84 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~-~~y~ 84 (276)
..++.++++|.++|+.++..|...|..++.. +|-.. .++.|++.|....+.+.+...+..+..++.. ++.+
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 3488999999999999999999999999753 22222 4788888765544446666666666665541 0111
Q ss_pred c-CCChhhHHHHHHHHHHhcCCc----chHHHHHHHHHHHH---HhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchh
Q psy16364 85 Y-ITNFEWYMTVLVELTRMEGTR----HGALVAAQMMDVAI---RVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRM 151 (276)
Q Consensus 85 ~-~~~~~W~v~~ll~ll~~~~~~----~~~~i~~~l~~vi~---~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~ 151 (276)
- +....--+..|++++...... +......-+..+.. ..++.+.. ++..+..++....
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~---------- 276 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS---------- 276 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC----------
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC----------
Confidence 0 000112344556666433221 11122222333322 12222221 2333344443211
Q ss_pred hhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 152 AEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 152 ~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
.++...++ |.++......+.+...+. . ......+.+.|++.+..+|+.|..-|..|+.
T Consensus 277 ~~v~~~A~------~aL~nLa~~~~~~~~~i~--------~------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 277 LTIVSNAC------GTLWNLSARNPKDQEALW--------D------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHH------HHHHHHTSSCHHHHHHHH--------H------TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHH------HHHHHHhCCCHHHHHHHH--------H------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 34455555 666655432222222221 0 1224456678889999999999888877664
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.28 E-value=0.49 Score=41.03 Aligned_cols=194 Identities=11% Similarity=0.130 Sum_probs=99.3
Q ss_pred cccChhhHHHhHHHHHhhhcCCCh------------hHHhhHHHHHHhhcCC-CcHHH-----HHHHHHH-hhhhcCCch
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDE------------SIRLRALDLLYGMVSK-KTLME-----IVKKLMV-HMDKAEGTM 65 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~------------sIr~~aL~Ll~~l~~~-~n~~~-----iv~~L~~-~L~~~~~~~ 65 (276)
++-.|+-.+. ...++..|.++++ .-+..|++.+..++.. +|... .++.|+. .|...+ ..
T Consensus 20 ~~~~~d~~~~-mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~-~~ 97 (296)
T 1xqr_A 20 MRGQRGEVEQ-MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA-AG 97 (296)
T ss_dssp CCSCHHHHHH-HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS-HH
T ss_pred HcCCCCHHHH-HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCC-HH
Confidence 3333554333 4555667777632 4678899999999864 34333 4678888 666544 47
Q ss_pred hHHHHHHHHHHHhhhcCCccCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--hhhhHHHHHHHHHHhhcCCCCC
Q psy16364 66 YRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR--VSAVRAFAVAQMSSLLASPSPP 143 (276)
Q Consensus 66 ~r~~li~~I~~~~~~~~y~~~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~--~~~~~~~~~~~~~~ll~~~~~~ 143 (276)
.|...+..+..++.. .+...+. +++ ......+..++.. .++++..++..++.+....
T Consensus 98 vr~~Aa~~Lg~ia~~-----n~~~~~~---vv~----------~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~--- 156 (296)
T 1xqr_A 98 LRWRAAQLIGTCSQN-----VAAIQEQ---VLG----------LGALRKLLRLLDRDACDTVRVKALFAISCLVREQ--- 156 (296)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHH---HHH----------TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHhC-----CHHHHHH---HHH----------CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC---
Confidence 787777777766641 1111121 111 0112233333322 1233434444444433210
Q ss_pred CCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHH
Q psy16364 144 LSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRL 218 (276)
Q Consensus 144 ~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ 218 (276)
++. .+++.+.++.-.+.+.+.+.+..++.-+..++..++.-++... ......++..|.++|..+|.
T Consensus 157 --------~~~-~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~ 227 (296)
T 1xqr_A 157 --------EAG-LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227 (296)
T ss_dssp --------HHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHH
T ss_pred --------cHH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHH
Confidence 000 0000011222333333344444455555555555554443221 12456677889999999999
Q ss_pred HHHHHHHhcCCc
Q psy16364 219 RALDLLYGMVSK 230 (276)
Q Consensus 219 ralell~~l~~~ 230 (276)
.|+..+..++..
T Consensus 228 ~al~aL~~l~~~ 239 (296)
T 1xqr_A 228 HVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999777654
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.99 E-value=1 Score=41.96 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=121.7
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCC-cHHH------HHHHHHHhhhhcCCc----hhHHHHHHHHHHHhhhcCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK-TLME------IVKKLMVHMDKAEGT----MYRDELLSKVIDICSQNNY 83 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~------iv~~L~~~L~~~~~~----~~r~~li~~I~~~~~~~~y 83 (276)
-++.++.+|.++|+.++..|+..|..|+..+ ..+. .++.|+..|...+.. .+....+..+..+|..
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~--- 239 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN--- 239 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc---
Confidence 4788899999999999999999999998643 2222 356777777654322 2233344444455532
Q ss_pred ccCCChhhH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhcCCCCCCCCCCchhhh
Q psy16364 84 QYITNFEWY-----MTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA-----FAVAQMSSLLASPSPPLSQPSSRMAE 153 (276)
Q Consensus 84 ~~~~~~~W~-----v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~ 153 (276)
-.+..++. +..+.+++......+......-+..+....++... -++..+..++.... ..
T Consensus 240 -~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------~~ 308 (529)
T 3tpo_A 240 -KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE----------LP 308 (529)
T ss_dssp -CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC----------HH
T ss_pred -ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC----------hh
Confidence 11112221 22333433322111111111112111111111000 01122223332211 11
Q ss_pred hhHHhh-----------------hccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchH-----HHHHHHHHHhcC
Q psy16364 154 MMFDEY-----------------SDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQ-----SHRDLIMQCLDD 211 (276)
Q Consensus 154 ~L~~~~-----------------~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~-----~~~~~i~~~l~~ 211 (276)
+...++ .+.++.-.+..++.+.+..++.-+..++..++.-++.... .....++..|.+
T Consensus 309 v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 111111 1223344555666666677888888888888765543222 235667888999
Q ss_pred CCHHHHHHHHHHHHhcCC---cchHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHH
Q psy16364 212 KDESIRLRALDLLYGMVS---KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDI 263 (276)
Q Consensus 212 ~D~~iq~ralell~~l~~---~~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~ 263 (276)
.+..+|+.|.-.+..++. .+++..+ ++.|.+-|...| ...+.-.+..+..+
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNI 447 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 999999999988877764 3444443 455666665555 46666554444433
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.92 E-value=0.74 Score=39.89 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=49.5
Q ss_pred hHHHHHh-hhcCCChhHHhhHHHHHHhhcCCCc-HH------HHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 15 HRDLIMQ-CLDDKDESIRLRALDLLYGMVSKKT-LM------EIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 15 ~~~~I~~-~L~d~D~sIr~~aL~Ll~~l~~~~n-~~------~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
-.+.++. +|.++++.||..|+..+-.++..+. ++ ..++.|++.|....+..+|...+..+..+|.
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 3566788 9999999999999999999986432 21 3678888888754345788888888887774
No 57
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.91 E-value=0.21 Score=46.27 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=101.4
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC---CcHHH-----HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhc-CCc
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK---KTLME-----IVKKLMVHMDKAEGTMYRDELLSKVIDICSQN-NYQ 84 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~---~n~~~-----iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~-~y~ 84 (276)
..++.++++|.++|+.++..|...|..++.. +|-.. .++.|++.|....+...+...+..+..++..+ +.+
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 4488999999999999999999999998763 22222 46788887655444466666666666555410 111
Q ss_pred c-CCChhhHHHHHHHHHHhcCCc----chHHHHHHHHHHHH---HhhhhHHH-----HHHHHHHhhcCCCCCCCCCCchh
Q psy16364 85 Y-ITNFEWYMTVLVELTRMEGTR----HGALVAAQMMDVAI---RVSAVRAF-----AVAQMSSLLASPSPPLSQPSSRM 151 (276)
Q Consensus 85 ~-~~~~~W~v~~ll~ll~~~~~~----~~~~i~~~l~~vi~---~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~ 151 (276)
- +....--+..+.+++...... ...+...-+..+.. ..++.+.. ++..+..++....
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~---------- 392 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS---------- 392 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC----------
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC----------
Confidence 0 000112344555666543221 11222223333322 22222221 2333444443221
Q ss_pred hhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 152 AEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 152 ~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
.++...|+ |.++......+.+..++. . ......+.+.|++.|..+|+.|..-|..|+..
T Consensus 393 ~~v~~~A~------~aL~nLa~~~~~~~~~i~--------~------~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 393 LTIVSNAC------GTLWNLSARNPKDQEALW--------D------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHH------HHHHHHHSSCHHHHHHHH--------H------HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHH------HHHHHHHcCCHHHHHHHH--------H------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 34555566 666665432222222221 1 12345567788999999999999999777654
No 58
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.21 E-value=0.16 Score=42.11 Aligned_cols=93 Identities=4% Similarity=0.038 Sum_probs=75.1
Q ss_pred CCCchHHHHHHHHHHHHhhhCc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCC
Q psy16364 174 RMPNHMKYLGLLAMSKILKTHP----KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEG 249 (276)
Q Consensus 174 ~~~~n~ryl~L~~l~~l~~~~~----~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~ 249 (276)
..+.+.+..++.++..++..-. ...+.....++.++.|+...+|+.|.+.+..++...++..+++.+...|...+
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~- 146 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKN- 146 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-
Confidence 4555678888888888886533 23445567778888999999999999999999988889999999999988765
Q ss_pred chHHHHHHHHHHHHhccC
Q psy16364 250 TMYRDELLSKVIDICSQN 267 (276)
Q Consensus 250 ~~~~~~l~~~i~~~~~~~ 267 (276)
+..|.+.+.-|..+++..
T Consensus 147 ~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 147 PSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 599999999999976653
No 59
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.71 E-value=2.1 Score=37.91 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHHH-----HHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 202 RDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIV-----KKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 202 ~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~iv-----~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
...++..|++++.++|+.|.-.+..++ ++++.+.++ +.|.+-|... ++..|+.-+..+..++..+
T Consensus 265 i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 466778899999999999999998888 466666664 3344433333 4588999888888888763
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.50 E-value=2.9 Score=38.51 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchHHHHHHH-----HHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 202 RDLIMQCLDDKDESIRLRALDLLYGMV--SKKTLMEIVKK-----LMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 202 ~~~i~~~l~~~D~~iq~ralell~~l~--~~~n~~~iv~~-----l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
...++..|++.+.++|+.|.-.+..++ ++++.+.+++. |.+-|. +.++..|+.-+..+..++..+
T Consensus 381 i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~-s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCC
Confidence 456778899999999999999998887 56777766543 333333 344588999999999998764
No 61
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.47 E-value=0.36 Score=43.13 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=42.5
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDI 77 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~ 77 (276)
--...+.+=++|+++-||.-||..+..+..++-++.+.+.+.+-+....+ ..|...+-.+.++
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~p-yVRk~A~l~~~kL 166 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVP-SVSSSALVSSLHL 166 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHH
Confidence 34555666677888888888888888888888777777777666655544 5555444433333
No 62
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.64 E-value=3.5 Score=37.13 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=53.6
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC 78 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~ 78 (276)
+.++|+++.++.+.|+++-.|++..||+-..+++.+.+.+ +.+...++.|...|...++ .++.+++..+
T Consensus 54 l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~-----~V~K~~I~~~ 124 (386)
T 3o2t_A 54 INKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENV-----NVVKKAILTM 124 (386)
T ss_dssp HTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSH-----HHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHH
Confidence 5689999999999999999999999999999999998853 5567777777777663332 3455555444
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.61 E-value=4.2 Score=37.07 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=35.9
Q ss_pred HhHHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHH-----HHHHHHHHhh
Q psy16364 14 SHRDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLM-----EIVKKLMVHM 58 (276)
Q Consensus 14 ~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~-----~iv~~L~~~L 58 (276)
.-++.++++|. ++|+.++..|...|..++.....+ ..++.|++.|
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 34788899999 889999999999999998653322 4678888887
No 64
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.94 E-value=5.8 Score=36.77 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=54.0
Q ss_pred cccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcC
Q psy16364 3 KILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAE 62 (276)
Q Consensus 3 ~i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~ 62 (276)
|.++..|++-++-++..+++.+|.|..||..|+.=+-.+|..+++..++.-|.+.|..-+
T Consensus 54 kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 54 KFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDD 113 (507)
T ss_dssp HHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCC
T ss_pred HHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccc
Confidence 568899999999999999999999999999999999999988999999988887776433
No 65
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.36 E-value=3 Score=40.99 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhCc----c----chH--HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-H-HHH-----------
Q psy16364 180 KYLGLLAMSKILKTHP----K----SVQ--SHRDLIMQCLDDKDESIRLRALDLLYGMVSKKT-L-MEI----------- 236 (276)
Q Consensus 180 ryl~L~~l~~l~~~~~----~----~~~--~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n-~-~~i----------- 236 (276)
+|-++.||..|+.... + .+. ...+.+.++|.+.+..||+-|+|++..|+.... + +.+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r 655 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN 655 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc
Confidence 8899999999998751 1 222 357888889999999999999999988875443 2 122
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 237 VKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
++-|+..+.. ++...|+..+-.+..+++
T Consensus 656 L~lLV~Ll~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 656 FNILVKLLQL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence 3445555544 556888888877777653
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.39 E-value=2.2 Score=35.67 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=68.8
Q ss_pred CCchHHHHHHHHHHHHhhhCc--c----chHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc------h-HHHHHHHHH
Q psy16364 175 MPNHMKYLGLLAMSKILKTHP--K----SVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK------T-LMEIVKKLM 241 (276)
Q Consensus 175 ~~~n~ryl~L~~l~~l~~~~~--~----~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~------n-~~~iv~~l~ 241 (276)
.....+..++.++..|+..-. . ........+++.++|...++|..|..-+.+++..- . +..+++.|+
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 334567888888888886432 2 23344567777889999999999887776665433 3 889999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 242 VHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 242 ~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
..|.... +..|.+.+.-|..+++..
T Consensus 153 ~~l~~k~-~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 153 EHMKHKT-PQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHTTCSS-HHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCC-hHHHHHHHHHHHHHHHHc
Confidence 9998776 599999999999888764
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.27 E-value=4.6 Score=33.96 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCc-cchHHHHHH
Q psy16364 126 RAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHP-KSVQSHRDL 204 (276)
Q Consensus 126 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~-~~~~~~~~~ 204 (276)
.-+|.+.+-.+++.+.. .++.+..++ ..+-.-+......++..+...+.++ .+ ...++....
T Consensus 92 al~A~r~L~~LLe~vpL--------~~~~y~Kl~------~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V~~~ 154 (265)
T 3b2a_A 92 TIKALRALGYLVKDVPM--------GSKTFLKAA------KTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLVRTY 154 (265)
T ss_dssp HHHHHHHHHHHHTTCCB--------CHHHHHHHH------HHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC--------CHHHHHHHH------HHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHHHHH
Confidence 34566777777776532 123333333 3333333444444555555666666 33 446788899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccCC
Q psy16364 205 IMQCLDDKDESIRLRALDLLYGMVSK----KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN 268 (276)
Q Consensus 205 i~~~l~~~D~~iq~ralell~~l~~~----~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~~ 268 (276)
+...+.++|..+|--|+-++..|.+. +.+++|++++-..|..-| +..++--...+..+..+.-
T Consensus 155 l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 155 INELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDN-EFIVELALDVLEKALSFPL 221 (265)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999888765 459999999887776664 5777777777766666543
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.57 E-value=0.93 Score=33.62 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=48.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchH
Q psy16364 173 SRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMY 252 (276)
Q Consensus 173 ~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~ 252 (276)
.+.+...|..+..+|.++.. +.....+..+|+|+|..+|..|.+-+-.+.++ ..++.|.+.+...+ +..
T Consensus 52 ~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~----~a~~~L~~~l~d~~-~~v 120 (131)
T 1te4_A 52 SNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE----RVRAAMEKLAETGT-GFA 120 (131)
T ss_dssp GCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH----HHHHHHHHHTTSCC-THH
T ss_pred cCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HHHHHHHHHHhCCC-HHH
Confidence 33344455555555554432 23456677788899999999999999776643 34556666665444 477
Q ss_pred HHHHHHHH
Q psy16364 253 RDELLSKV 260 (276)
Q Consensus 253 ~~~l~~~i 260 (276)
|...+..+
T Consensus 121 r~~A~~aL 128 (131)
T 1te4_A 121 RKVAVNYL 128 (131)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 76655443
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.15 E-value=13 Score=35.30 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=49.6
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cHH-----HHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLM-----EIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~~-----~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
.-++.++++|..+|+.++..|...+..++..+ |-. ..||.|++.|...+ ...+...+..+..++.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISF 119 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHc
Confidence 44788999999999999999999999888532 222 24788998887654 4778777777777764
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.77 E-value=18 Score=36.41 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=126.3
Q ss_pred hHHHHHhhhcCCChhHH-hhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChhhHH
Q psy16364 15 HRDLIMQCLDDKDESIR-LRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYM 93 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr-~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~W~v 93 (276)
-.+.+..+|.|++..++ ..|+.|-.-++-..|- ..+..|+.++.......+|+-+...+.-+.. .-....+=++
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~ai~~LL~~~~e~~~e~vrR~aalgLGll~~----g~~e~~~~li 547 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-EAIHDMFTYSQETQHGNITRGLAVGLALINY----GRQELADDLI 547 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT----TCGGGGHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC----CChHHHHHHH
Confidence 35667778877765444 3333333333344442 4556777766555455666665555553321 0000111111
Q ss_pred HHH--------------HHHHHhcCCcchHHHHHHHHHHHHHh--hhhHHHHHHHHHHhh-cCCCCCCCCCCchhhhhhH
Q psy16364 94 TVL--------------VELTRMEGTRHGALVAAQMMDVAIRV--SAVRAFAVAQMSSLL-ASPSPPLSQPSSRMAEMMF 156 (276)
Q Consensus 94 ~~l--------------l~ll~~~~~~~~~~i~~~l~~vi~~~--~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~L~ 156 (276)
..+ .--+.+.|.. .....+.+...+... +.+|..++..+..+. .+. +...
T Consensus 548 ~~L~~~~dp~vRygaa~alglAyaGTG-n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------e~v~ 614 (963)
T 4ady_A 548 TKMLASDESLLRYGGAFTIALAYAGTG-NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------TTVP 614 (963)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------SSHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------HHHH
Confidence 111 1112223433 245566677776643 457777777777553 221 1111
Q ss_pred HhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----Ccc-
Q psy16364 157 DEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMV----SKK- 231 (276)
Q Consensus 157 ~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~----~~~- 231 (276)
-+++-+.++.++.+||-+-.+|..+..-+| .++..+++...+.|+|..+||-|..-+ +++ +..
T Consensus 615 ---------rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~aid~L~~L~~D~d~~Vrq~Ai~AL-G~Ig~gtnna~ 682 (963)
T 4ady_A 615 ---------RIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAIDVLDPLTKDPVDFVRQAAMIAL-SMILIQQTEKL 682 (963)
T ss_dssp ---------HHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHTCSSHHHHHHHHHHH-HHHSTTCCTTT
T ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHHHHHHHHccCCCHHHHHHHHHHH-HHHhcCCcccc
Confidence 223444455677899988887777665444 356677888889999999999999887 332 222
Q ss_pred --hHHHHHHHHHHHhhhc-CC--chHHHHHHHHHHHHhccC
Q psy16364 232 --TLMEIVKKLMVHMDKA-EG--TMYRDELLSKVIDICSQN 267 (276)
Q Consensus 232 --n~~~iv~~l~~~l~~~-~~--~~~~~~l~~~i~~~~~~~ 267 (276)
.+..+.+.|.++.... ++ .-|---++..|..+...+
T Consensus 683 ~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 683 NPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp CTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred chHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 5778888888887532 12 367778888888766553
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.00 E-value=2.1 Score=39.10 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH-----HHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 202 RDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI-----VKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 202 ~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i-----v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
.+.++.+|++++.++|..|.--|..|+. ++|-..| ++.|++.|..+.+++.++..+..+..++..+
T Consensus 46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~ 118 (457)
T 1xm9_A 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH
Confidence 5667789999999999999999988873 5776666 5678888874444699999999998888764
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.44 E-value=20 Score=35.20 Aligned_cols=65 Identities=8% Similarity=0.140 Sum_probs=45.5
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHH------HHHHHHHHhhhhcCCc--hhHHHHHHHHHHHhh
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLM------EIVKKLMVHMDKAEGT--MYRDELLSKVIDICS 79 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~------~iv~~L~~~L~~~~~~--~~r~~li~~I~~~~~ 79 (276)
-++.+..++..++++++..|+..+..++.....+ ..++.|+..|....+. ..|......+.++..
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999998654322 2467788887654331 256666666766654
No 73
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.20 E-value=2.7 Score=32.98 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=29.8
Q ss_pred ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+..|+-..+-...|.+-|.++++.+...||.|+-.++.
T Consensus 44 ~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vk 81 (163)
T 1x5b_A 44 GSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVA 81 (163)
T ss_dssp HHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33444445666677788899999999999999999985
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.67 E-value=20 Score=36.23 Aligned_cols=67 Identities=12% Similarity=0.262 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHH---HhcC-CcchHHHHHHHHHHHhhhc----CCchHHHHHHHHHHHH
Q psy16364 197 SVQSHRDLIMQCLDDKDESIRLRALDLL---YGMV-SKKTLMEIVKKLMVHMDKA----EGTMYRDELLSKVIDI 263 (276)
Q Consensus 197 ~~~~~~~~i~~~l~~~D~~iq~ralell---~~l~-~~~n~~~iv~~l~~~l~~~----~~~~~~~~l~~~i~~~ 263 (276)
.+.-....+...|+++..+++|++.=.+ ++|+ |+..+++.++.|++-+.+. .+++-|+--...+..+
T Consensus 248 ~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 248 TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 3445667788899999999999997665 4555 5788999999999999762 2357776655554444
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=85.70 E-value=3.4 Score=30.42 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhh
Q psy16364 16 RDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMD 59 (276)
Q Consensus 16 ~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~ 59 (276)
.+.+.++|+|+|+.||..|+..+-.+.++ ..++.|.+.|.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~----~a~~~L~~~L~ 83 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE----RAVEPLIKLLE 83 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHc
Confidence 35566677777777777777766665542 33444554443
No 76
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.41 E-value=7.8 Score=35.88 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q psy16364 177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 246 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~ 246 (276)
...|-++=.-+.+..+.+|+...+..+..++...|.|+.||.-|..-|..+|..+++..+++-|.+-|..
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQT 111 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhc
Confidence 4577777777888888899988888999999999999999999999999999888888888877666553
No 77
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.09 E-value=3.5 Score=31.47 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=45.8
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC--cH------HHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TL------MEIVKKLMVHMDKAEGTMYRDELLSKVID 76 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~--n~------~~iv~~L~~~L~~~~~~~~r~~li~~I~~ 76 (276)
++..|+--.+-...|.+-|.++++.+...||.|+-.++..- .+ ++++.+|.+.+.+.. ...+..++.-|..
T Consensus 33 I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~ 111 (140)
T 3ldz_A 33 VGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVE 111 (140)
T ss_dssp HTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred HHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHH
Confidence 34555555666777888899999999999999999987431 11 445556555554332 2444444444443
Q ss_pred Hh
Q psy16364 77 IC 78 (276)
Q Consensus 77 ~~ 78 (276)
-.
T Consensus 112 W~ 113 (140)
T 3ldz_A 112 WT 113 (140)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 78
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=85.05 E-value=33 Score=34.19 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhhh-CccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-----------------chHHHHHHH
Q psy16364 178 HMKYLGLLAMSKILKT-HPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-----------------KTLMEIVKK 239 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~-~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~-----------------~n~~~iv~~ 239 (276)
-+|+-++.++.+++.. .++..+.....++.+|.|++.-+|..|.--+..++.. +-+..+++.
T Consensus 473 ~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~ 552 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKN 552 (960)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHH
T ss_pred eehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHH
Confidence 4566666666666554 2344556667788899999999999999988776642 235666666
Q ss_pred HHHHhhhc
Q psy16364 240 LMVHMDKA 247 (276)
Q Consensus 240 l~~~l~~~ 247 (276)
|+.-+...
T Consensus 553 L~~ll~~~ 560 (960)
T 1wa5_C 553 LIALILKH 560 (960)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 66665553
No 79
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=84.76 E-value=11 Score=31.35 Aligned_cols=97 Identities=9% Similarity=0.078 Sum_probs=63.0
Q ss_pred cccCCCc--hHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchHHHH-----
Q psy16364 171 FSSRMPN--HMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS--KKTLMEI----- 236 (276)
Q Consensus 171 f~~~~~~--n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~--~~n~~~i----- 236 (276)
++.+.+. ..+..+..++..++..++... ..-...+++.|++++.++|+.|..-|..++. ++|-..|
T Consensus 16 lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~Ga 95 (233)
T 3tt9_A 16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNG 95 (233)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 3444444 445555555656555443221 1235678889999999999999999988874 4565554
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 237 VKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
++.|++-|..+.+.+.++..+..+..++..+
T Consensus 96 I~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 96 VPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 5567777765433578888877777776543
No 80
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.83 E-value=22 Score=31.26 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=83.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhhhhHHHHH--------HHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchh
Q psy16364 96 LVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAV--------AQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIF 167 (276)
Q Consensus 96 ll~ll~~~~~~~~~~i~~~l~~vi~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~i 167 (276)
+++....++-++..+.-..+.+++.+++++-.+.. ..+-.+++..+. =+-+++. -.
T Consensus 169 fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY----------VTkRQSl------KL 232 (341)
T 1upk_A 169 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY----------VTKRQSL------KL 232 (341)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH----------HHHHHHH------HH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc----------hhHHHHH------HH
Confidence 44444444444556667788888888765432211 222233333211 1234444 67
Q ss_pred hhccccCCCch---HHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH-HhcCCcchHHHHHH-----
Q psy16364 168 NIKFSSRMPNH---MKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL-YGMVSKKTLMEIVK----- 238 (276)
Q Consensus 168 lGef~~~~~~n---~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell-~~l~~~~n~~~iv~----- 238 (276)
+||++....|. .||++ -+++...++..|+|+.-.||-.|.... .-.+|++.-.+|++
T Consensus 233 LgelLldr~N~~vM~~Yis--------------~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~N 298 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYIS--------------KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN 298 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTT--------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred HHHHHhCchHHHHHHHHhC--------------CHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHH
Confidence 78877666552 34433 357888899999999999999999986 23357655555554
Q ss_pred --HHHHHhhh-----cCCchHHHH---HHHHHHHHh
Q psy16364 239 --KLMVHMDK-----AEGTMYRDE---LLSKVIDIC 264 (276)
Q Consensus 239 --~l~~~l~~-----~~~~~~~~~---l~~~i~~~~ 264 (276)
+|+.||.. .+|+.|.+| ++..|..+-
T Consensus 299 r~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 299 QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp HHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 34555533 356688888 666665553
No 81
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=83.55 E-value=20 Score=37.45 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhcCCCCCCCCCCchhhhhhHHhhhccccchhhhccccCCCchHHHHHHHH
Q psy16364 108 GALVAAQMMDVAIRVS-AVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLA 186 (276)
Q Consensus 108 ~~~i~~~l~~vi~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~ 186 (276)
++++.+.+.+++...| .++..++..+-+++.+.+ .+.+. ..+.+.+.. ++.+.--.|++
T Consensus 155 ~~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~---------H~~v~----------~~L~~lL~~-~~~L~~~iLda 214 (1323)
T 3s4w_B 155 GKDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQ---------HANVG----------KELGELLVQ-NTSLTVPILDV 214 (1323)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGG---------HHHHH----------HHHHHHHHH-CSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchh---------hHHHH----------HHHHHHHhc-CcchHHHHHHH
Confidence 4678888888887766 566666666666654321 12222 223333332 34466667777
Q ss_pred HHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q psy16364 187 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 246 (276)
Q Consensus 187 l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~ 246 (276)
|..| ..+++...+.++.+++.|.+.+.+.==-...++..-++.+|+.++|.+|-+.|.-
T Consensus 215 Ls~L-~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~ 273 (1323)
T 3s4w_B 215 FSSL-RLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNV 273 (1323)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHC
T ss_pred HHcC-CCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCc
Confidence 7776 5578888899999999999877766666677777778899999999999987743
No 82
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.30 E-value=32 Score=34.66 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHh---hhCccchHHHHHHHHH--HhcCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHhh
Q psy16364 177 NHMKYLGLLAMSKIL---KTHPKSVQSHRDLIMQ--CLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMD 245 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~---~~~~~~~~~~~~~i~~--~l~~~D~~iq~ralell~~l~~~------~n~~~iv~~l~~~l~ 245 (276)
+-+|+....++.+.. ..+|...+.....++. .+.+++..+|.||.-.+..+|.. +-+..|+..+-+.|.
T Consensus 509 p~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 509 PLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 345665555554433 3467777888888888 88889999999999998777532 334555555544444
No 83
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.86 E-value=9.5 Score=31.48 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=28.9
Q ss_pred cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
..|+--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus 38 ~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vk 74 (226)
T 3zyq_A 38 QGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVK 74 (226)
T ss_dssp TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3344445666677788899999999999999999884
No 84
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=80.81 E-value=11 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=30.9
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
++..|+--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus 39 I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvk 77 (149)
T 3g2s_A 39 LNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMK 77 (149)
T ss_dssp GGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344555555666777888999999999999999999884
No 85
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.88 E-value=10 Score=29.13 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=30.3
Q ss_pred ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+..|+--.+-...|.+-|.++++.+...||.|+-.++.
T Consensus 30 ~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vk 67 (148)
T 1mhq_A 30 NTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMN 67 (148)
T ss_dssp HHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34454445666777888999999999999999999985
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=78.38 E-value=7.3 Score=33.15 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=46.9
Q ss_pred ccChhhHHHhHHHHHh----hhcCCChhHHhhHHHHHHhhcCC---C-------cHHHHHHHHHHhhhhcCCchhHHHHH
Q psy16364 6 KTHPKSVQSHRDLIMQ----CLDDKDESIRLRALDLLYGMVSK---K-------TLMEIVKKLMVHMDKAEGTMYRDELL 71 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~----~L~d~D~sIr~~aL~Ll~~l~~~---~-------n~~~iv~~L~~~L~~~~~~~~r~~li 71 (276)
..+|+.+....+.+++ -+.|.++.|..++|+++..+++. . -+..++|.|+..+..+.+ .+|..+-
T Consensus 75 ~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~-~vR~~~r 153 (266)
T 2of3_A 75 DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKD-NMRTSVR 153 (266)
T ss_dssp HHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSH-HHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChH-HHHHHHH
Confidence 3456555555555544 24589999999999999987531 1 145788999888876654 5666544
Q ss_pred HHHHHHhh
Q psy16364 72 SKVIDICS 79 (276)
Q Consensus 72 ~~I~~~~~ 79 (276)
.-+..++.
T Consensus 154 ~il~~l~~ 161 (266)
T 2of3_A 154 DIVNVLSD 161 (266)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43334443
No 87
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=77.78 E-value=5 Score=34.00 Aligned_cols=70 Identities=10% Similarity=0.300 Sum_probs=53.3
Q ss_pred ccccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC--CcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHh
Q psy16364 4 ILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDIC 78 (276)
Q Consensus 4 i~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~--~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~ 78 (276)
++.++|+++.++.+.++..-.|++..||+-..+++.+.+.+ +-+...++.|...+...++ .++.+++..+
T Consensus 43 ~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~-----~V~K~~I~~~ 114 (257)
T 3gs3_A 43 VLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSA-----QVIKRVIQAC 114 (257)
T ss_dssp HTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCH-----HHHHHHHHHH
T ss_pred HHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHH
Confidence 45679999999999999998999999999999999998854 3466677777776664332 3455555443
No 88
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=76.23 E-value=14 Score=29.11 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=29.9
Q ss_pred ccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 6 ~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+..|+-..+-...|.+-|.++++.+...||.|+-.++.
T Consensus 42 ~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vk 79 (171)
T 1juq_A 42 NKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMK 79 (171)
T ss_dssp HHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33444445666777888999999999999999999984
No 89
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=74.57 E-value=23 Score=33.63 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=66.3
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhCccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---cchHHHH-----
Q psy16364 170 KFSSRMPNHMKYLGLLAMSKILKTHPKSV-----QSHRDLIMQCLDDKDESIRLRALDLLYGMVS---KKTLMEI----- 236 (276)
Q Consensus 170 ef~~~~~~n~ryl~L~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~D~~iq~ralell~~l~~---~~n~~~i----- 236 (276)
+++.+.+...+.-+..++..++..+.... ..-...++.+|++++.++|+.|.--|..|+. .+|-..|
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga 134 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG 134 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence 34444555666667777777765443221 1235778889999999999999999988885 4565555
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 237 VKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 237 v~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
++.|+..|....+.+.++..+..+..++.
T Consensus 135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 135 VPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 56788888765445778887777777765
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=72.86 E-value=7.7 Score=37.26 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=71.7
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCCC---cHHH------HHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcC-C
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSKK---TLME------IVKKLMVHMDKAEGTMYRDELLSKVIDICSQNN-Y 83 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~---n~~~------iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~-y 83 (276)
+.+..++++|++.|..+|.-|+.++..++..+ +.+. -++.|+..|.... +-.|.+.+.-+..++..+. .
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHH
Confidence 67888999999999999999999999998532 2222 3577887776543 3788888877777765210 0
Q ss_pred ccCCChhhHHHHHHHHHHhcCCcchHHH----HHHHHHHHHHhhhhHH
Q psy16364 84 QYITNFEWYMTVLVELTRMEGTRHGALV----AAQMMDVAIRVSAVRA 127 (276)
Q Consensus 84 ~~~~~~~W~v~~ll~ll~~~~~~~~~~i----~~~l~~vi~~~~~~~~ 127 (276)
.-..-|+=-.+.+++++...|.-.|..+ ..-+.+++..+++.|.
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~ 248 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence 0011122235677788887765333333 3445555555544443
No 91
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=68.61 E-value=16 Score=27.82 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=35.6
Q ss_pred hhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHH
Q psy16364 10 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLM 55 (276)
Q Consensus 10 ~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~ 55 (276)
+..++-.+.+.+-|+++++.+..+||.||--+|.+.+ ..++..+.
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r 89 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQ 89 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHH
Confidence 5567888889999999999999999999999997665 33444443
No 92
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=67.77 E-value=6.3 Score=28.62 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 211 DKDESIRLRALDLL--YGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 211 ~~D~~iq~ralell--~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
.....+++||+||+ |+=+++++.+.++.+|++. .+++..+.+|..+|-.+
T Consensus 28 ~e~s~~~~ktl~y~~kFsk~~~e~a~~l~e~L~~~-------~l~e~~a~~I~nl~P~t 79 (107)
T 1go3_F 28 GELSYEQGCALDYLQKFAKLDKEEAKKLVEELISL-------GIDEKTAVKIADILPED 79 (107)
T ss_dssp SCCCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHT-------TCCHHHHHHHHHHCCCS
T ss_pred ccccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCHHHHHHHHHhCCCC
Confidence 56678999999999 4445788999999888742 26777788888888653
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=67.38 E-value=1e+02 Score=30.48 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhh---hCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHh----hhc-
Q psy16364 178 HMKYLGLLAMSKILK---THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--KTLMEIVKKLMVHM----DKA- 247 (276)
Q Consensus 178 n~ryl~L~~l~~l~~---~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~--~n~~~iv~~l~~~l----~~~- 247 (276)
-+|+-++.++.++.. .++...+.....++.+| + ..++..|...+..++.. ..+.+.++.+++.+ ...
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~ 597 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR 597 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 355555555554443 23556666677777777 3 66788888888777642 33444444444444 331
Q ss_pred CCchHHHHHHHHHHHHhcc
Q psy16364 248 EGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 248 ~~~~~~~~l~~~i~~~~~~ 266 (276)
-+..-+..+...|..++..
T Consensus 598 ~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 598 MKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHh
Confidence 1246777788888777653
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=66.61 E-value=51 Score=26.81 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=64.2
Q ss_pred CchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHH---HHHhhhcCCchH
Q psy16364 176 PNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKL---MVHMDKAEGTMY 252 (276)
Q Consensus 176 ~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l---~~~l~~~~~~~~ 252 (276)
++..|.=--.+|..++..+|...+.....|...+.|+|..=|--|+.++-+|-. +..+.++++| ..-|.-. ++-.
T Consensus 120 d~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe-n~~~yv~PfLprL~aLL~D~-deiV 197 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE-NSFKYVNPFLPRIINLLHDG-DEIV 197 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-TTHHHHGGGHHHHHGGGGCS-SHHH
T ss_pred CccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-cCccccCcchHHHHHHHcCc-chhh
Confidence 455554444667799999999999999999999999999999999999977743 3344444444 3333333 3577
Q ss_pred HHHHHHHHHHHhccC
Q psy16364 253 RDELLSKVIDICSQN 267 (276)
Q Consensus 253 ~~~l~~~i~~~~~~~ 267 (276)
|..-+.....+|+.+
T Consensus 198 RaSaVEtL~~lA~~n 212 (253)
T 2db0_A 198 RASAVEALVHLATLN 212 (253)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHcC
Confidence 777777777777654
No 95
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.75 E-value=24 Score=28.71 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=29.0
Q ss_pred cChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 7 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 7 ~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
..|+-..+-...|.+-|.++++.+...||.|+-.++.
T Consensus 35 ~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vk 71 (220)
T 1dvp_A 35 QKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (220)
T ss_dssp TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 3444445556667788899999999999999999884
No 96
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=63.56 E-value=50 Score=27.72 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=44.0
Q ss_pred cccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 171 FSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 171 f~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
|....+..+|..+..-+......++....+..+.+...|+|.|+.+.+||..-.
T Consensus 61 ~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 61 LAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQAC 114 (257)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 444455667777777777777888999999999999999999999999988753
No 97
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=63.18 E-value=19 Score=36.42 Aligned_cols=110 Identities=13% Similarity=0.213 Sum_probs=61.5
Q ss_pred ChhhHHHhHHHHHhhhcCCC-hhHHhhHHHHHHhhcCCC----cHHHHHHHHHHhhhh--cCC---c------hhHHHHH
Q psy16364 8 HPKSVQSHRDLIMQCLDDKD-ESIRLRALDLLYGMVSKK----TLMEIVKKLMVHMDK--AEG---T------MYRDELL 71 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d~D-~sIr~~aL~Ll~~l~~~~----n~~~iv~~L~~~L~~--~~~---~------~~r~~li 71 (276)
.++-...-.+.+..+|.|+. ..||..|-..|.+++.-. ...+++..+.+.+.+ ... . .-|.--+
T Consensus 837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV 916 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV 916 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence 34444567788999999999 999999999999995332 334455544444311 000 0 0111111
Q ss_pred HHHHHHhhhcCCcc-CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy16364 72 SKVIDICSQNNYQY-ITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIR 121 (276)
Q Consensus 72 ~~I~~~~~~~~y~~-~~~~~W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~ 121 (276)
.-+..+. ..+=| +|+++|.-..+..|.....+. .-|...+.+.+..
T Consensus 917 LgL~AlV--~a~Py~vP~P~w~P~~l~~La~~~~~~--~~i~~tvk~tlse 963 (997)
T 1vsy_5 917 LGLGAII--SAFPYVFPLPPWIPKNLSNLSSWARTS--GMTGNAAKNTISE 963 (997)
T ss_dssp HHHHHHH--TTCSCCSSCCTHHHHHHHHHHTTSSSC--SSHHHHTHHHHHH
T ss_pred HHHHHHH--hhCCCCCCCCcccHHHHHHHHHHhCCC--CchHHHHHHHHHH
Confidence 1122222 23334 334789998888877665442 2244555555443
No 98
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=61.53 E-value=56 Score=28.65 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=47.6
Q ss_pred hhhhccccCCCchHHHHHHHHHHHHhhhCc---cch--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc--hHHH
Q psy16364 166 IFNIKFSSRMPNHMKYLGLLAMSKILKTHP---KSV--QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK--TLME 235 (276)
Q Consensus 166 ~ilGef~~~~~~n~ryl~L~~l~~l~~~~~---~~~--~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~--n~~~ 235 (276)
.++..-+...+.|..-.+|.|+..+..... +.+ +.-.+.+...+.+.+..+.|+|+++|..+|..+ |...
T Consensus 163 ~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~l 239 (339)
T 3dad_A 163 SCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPL 239 (339)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchH
Confidence 333333444577888888999888876521 222 234556667778999999999999998887544 4443
No 99
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=59.76 E-value=40 Score=28.24 Aligned_cols=88 Identities=14% Similarity=0.257 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHhhhCccchHHHHHHHHH----HhcCCCHHHHHHHHHHH--------HhcCCcchHHHHHHHHHHHh
Q psy16364 177 NHMKYLGLLAMSKILKTHPKSVQSHRDLIMQ----CLDDKDESIRLRALDLL--------YGMVSKKTLMEIVKKLMVHM 244 (276)
Q Consensus 177 ~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~----~l~~~D~~iq~ralell--------~~l~~~~n~~~iv~~l~~~l 244 (276)
+|+..++ ..+..|.+.++..+-...+.+++ .|...|...+||.+-.. ++|++.+.+-..+-.++.|=
T Consensus 55 ~nI~~lA-~ll~~L~~~~~~~~i~vVD~vlE~Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg 133 (248)
T 1uw4_B 55 NSIHCVA-NLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 133 (248)
T ss_dssp GGHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTT
T ss_pred chHHHHH-HHHHHHHhhChHHhhhhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCC
Confidence 3455555 23445556666665555555544 66778887777766442 67899999988888888862
Q ss_pred hh----------cCCchHHHHHHHHHHHHhcc
Q psy16364 245 DK----------AEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 245 ~~----------~~~~~~~~~l~~~i~~~~~~ 266 (276)
.. .++ .||-.++-++...|..
T Consensus 134 ~~~~~~~~~~D~p~d-~FRIrLvCtLL~tcg~ 164 (248)
T 1uw4_B 134 VNPDGSPSSLDPPEH-LFRIRLVCTILDTCGQ 164 (248)
T ss_dssp CCTTSCCCSSSCTTC-CHHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCCcc-chhHHHHHHHHHHHHH
Confidence 21 233 8999999999999986
No 100
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=59.06 E-value=1.5e+02 Score=29.68 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=30.4
Q ss_pred hCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 193 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 193 ~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
.++...+.....++.++.+++..+|.+|...+..++..
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 35566667777788899999999999999998777753
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=58.67 E-value=73 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHh
Q psy16364 202 RDLIMQCLD-DKDESIRLRALDLLYGMVS-KKTLMEIVKKLMVHM 244 (276)
Q Consensus 202 ~~~i~~~l~-~~D~~iq~ralell~~l~~-~~n~~~iv~~l~~~l 244 (276)
...++..|. ++|.++|..|.-.|..|.. .+|-..|+++-++.|
T Consensus 96 I~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~L 140 (233)
T 3tt9_A 96 VPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTL 140 (233)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHH
Confidence 344555665 4678888887777766654 344555555544444
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=58.55 E-value=1.3e+02 Score=28.82 Aligned_cols=204 Identities=15% Similarity=0.209 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhhcCCccCCChh-hHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh
Q psy16364 44 KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE-WYMTVLVELTRMEGTRHGALVAAQMMDVAIRV 122 (276)
Q Consensus 44 ~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~~~~y~~~~~~~-W~v~~ll~ll~~~~~~~~~~i~~~l~~vi~~~ 122 (276)
+.++.+.|+.|...+..+.-.+=|+..+..+..... +|..... -=...++..++-.+. +.++.....+.+..
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~- 88 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK----KYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYN- 88 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----TTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHH-
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH----HhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHH-
Confidence 357888999999999887766778777777776554 3322111 112344444444322 33443333333321
Q ss_pred hhhHHHHHHHHHHhhcCCCCC-----CCCCCchhh-hhhHHhhhccccchhhhccccCCCchHHHHHHHHHHHHhhhCcc
Q psy16364 123 SAVRAFAVAQMSSLLASPSPP-----LSQPSSRMA-EMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK 196 (276)
Q Consensus 123 ~~~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~-~~L~~~~~~~~~~~ilGef~~~~~~n~ryl~L~~l~~l~~~~~~ 196 (276)
++.....- ...+..... ..-.....+..++..+=++++..+-..|+.++..|..++..+|.
T Consensus 89 -------------l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 89 -------------IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp -------------HHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred -------------HhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH
Confidence 11100000 000000000 00000001122334455566777778999999999999988876
Q ss_pred chH-------HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-cchHHHHHHH------HHHHhhh---cCCchHHHHHHHH
Q psy16364 197 SVQ-------SHRDLIMQCLDDKDESIRLRALDLLYGMVS-KKTLMEIVKK------LMVHMDK---AEGTMYRDELLSK 259 (276)
Q Consensus 197 ~~~-------~~~~~i~~~l~~~D~~iq~ralell~~l~~-~~n~~~iv~~------l~~~l~~---~~~~~~~~~l~~~ 259 (276)
..+ .-...+++.|+|...-||--|+-++..++. ..+++.+|-. |++=+.. .+++..-++...-
T Consensus 156 ~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 156 QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 332 345678889999999999999999999986 4566655544 3332222 2444666777777
Q ss_pred HHHHhccC
Q psy16364 260 VIDICSQN 267 (276)
Q Consensus 260 i~~~~~~~ 267 (276)
+..+...|
T Consensus 236 l~nLLr~N 243 (651)
T 3grl_A 236 LQNLLKNN 243 (651)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 88887776
No 103
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=56.68 E-value=69 Score=31.67 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCChhHHhhHHHHHHhhcC-----CCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 25 DKDESIRLRALDLLYGMVS-----KKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 25 d~D~sIr~~aL~Ll~~l~~-----~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
|+++.||..|+..+..+++ ++....+++.|++.|. ...+......+..+|+
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~----~~v~~~A~~al~~l~~ 572 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN----SSMSAQATLGLKELCR 572 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH----SSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHH
Confidence 6799999999999998763 4567888888888772 2556655555555554
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=56.35 E-value=38 Score=28.63 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=43.2
Q ss_pred HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy16364 12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 79 (276)
Q Consensus 12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I~~~~~ 79 (276)
+....+.+++-|.|+...||.++-.++..++.--+...+++.++.-++.- ..--|.+.+.-+..+.+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSK-NARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888777664344555666666655332 23455555555555554
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=55.92 E-value=84 Score=25.88 Aligned_cols=48 Identities=8% Similarity=0.277 Sum_probs=31.8
Q ss_pred HHhHHHHH-hhhcCCChhHHhhHHHHHHhhcCCC-cHHHHHHHHHHhhhh
Q psy16364 13 QSHRDLIM-QCLDDKDESIRLRALDLLYGMVSKK-TLMEIVKKLMVHMDK 60 (276)
Q Consensus 13 ~~~~~~I~-~~L~d~D~sIr~~aL~Ll~~l~~~~-n~~~iv~~L~~~L~~ 60 (276)
....+.++ +||.|+...+|..|++.+..++... ....++..+...+..
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~ 150 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEK 150 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGC
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34555555 4689999999999999988887543 334455555544443
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=55.51 E-value=22 Score=33.99 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=46.3
Q ss_pred HHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCC
Q psy16364 12 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEG 63 (276)
Q Consensus 12 v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~ 63 (276)
+....+.++.+|.|+|..||..|.+.+.-++.++.+..++..+|..|...++
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDD 348 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEEL 348 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcc
Confidence 4566888899999999999999999999999888899999999999987654
No 107
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=55.31 E-value=1.6e+02 Score=28.85 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhh---hCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHhhhcC-
Q psy16364 179 MKYLGLLAMSKILK---THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK------KTLMEIVKKLMVHMDKAE- 248 (276)
Q Consensus 179 ~ryl~L~~l~~l~~---~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~------~n~~~iv~~l~~~l~~~~- 248 (276)
+|.-++.++.++.. .++...+.....++..|++ ..+|..|...+..++.. +-+..+++.|.+-+...+
T Consensus 505 vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~ 582 (963)
T 2x19_B 505 LADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIH 582 (963)
T ss_dssp HHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 45444444444433 3455566666777788866 78889998888777642 334555555555554322
Q ss_pred CchHHHHHHHHHHHHhcc
Q psy16364 249 GTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 249 ~~~~~~~l~~~i~~~~~~ 266 (276)
+..-|..+...|..++..
T Consensus 583 ~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 246777777777777653
No 108
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=53.23 E-value=43 Score=23.62 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q psy16364 215 SIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICS 265 (276)
Q Consensus 215 ~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~ 265 (276)
++|+.|-+.+-.- +.-++..++.++.+.-...-|...|.|+..+|-...+
T Consensus 41 evr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 90 (96)
T 3mhs_B 41 KVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLE 90 (96)
T ss_dssp HHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 5677777776443 7889999999999998887788999999999987653
No 109
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=53.00 E-value=95 Score=25.54 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=40.3
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCc-cc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHP-KS------VQSHRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~-~~------~~~~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
+..++....+..+--.+..+..++..++ .. ++.....+..+|.|.|.++|.-|.+++..|
T Consensus 144 l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 144 VIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3455566666677667777777665432 21 223445566789999999999999998444
No 110
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=49.46 E-value=8.3 Score=28.27 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q psy16364 213 DESIRLRALDLLYGM--VSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQN 267 (276)
Q Consensus 213 D~~iq~ralell~~l--~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~~ 267 (276)
...+++||+||+-.+ ++++..+.++.+|++. ...++.+.+|..+|-.+
T Consensus 30 ~s~~~~ktl~y~~~Fsk~~~e~a~~l~e~L~~~-------~l~~~~~a~IanL~P~~ 79 (113)
T 4ayb_F 30 SSNLLQRTYDYLNSVEKCDAESAQKVVEELSSI-------ISREDVRAVLASICPIT 79 (113)
T ss_dssp CCTTHHHHHHHTTTTCSSCHHHHHHHHHHHHTT-------CCCHHHHHHHHHHCCCS
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHcCCCC
Confidence 346899999999433 5777888888777643 12334555798888765
No 111
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=45.74 E-value=1.1e+02 Score=27.07 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhhhCccc--h---HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---h-HHHHHHHHHH
Q psy16364 178 HMKYLGLLAMSKILKTHPKS--V---QSHRDLIMQCLDDKDESIRLRALDLLYGMVSKK---T-LMEIVKKLMV 242 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~--~---~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~---n-~~~iv~~l~~ 242 (276)
...+..+.|+-.+.+...+. + +.....+..+|.++.+.++..|+|+|.++|.-+ . .+.+++.+-.
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~ 146 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 146 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 34455566666655543321 1 223567788899999999999999998887633 2 5555554443
No 112
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.96 E-value=64 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=25.9
Q ss_pred ChhhHHHhHHHHHhhhc-CCChhHHhhHHHHHHhhcC
Q psy16364 8 HPKSVQSHRDLIMQCLD-DKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~ 43 (276)
.|.-..+-...|.+-|. .+++.+...||.|+-.++.
T Consensus 47 ~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vk 83 (157)
T 1elk_A 47 TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVK 83 (157)
T ss_dssp SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 34444455666777776 5788899999999988874
No 113
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.49 E-value=1.1e+02 Score=23.63 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--c-hH-----HHHHHHHHHHhhhcCCchHHHHHHH
Q psy16364 187 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK--K-TL-----MEIVKKLMVHMDKAEGTMYRDELLS 258 (276)
Q Consensus 187 l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~--~-n~-----~~iv~~l~~~l~~~~~~~~~~~l~~ 258 (276)
+..+++..+.........|..-|++.++.+|.+|+.++-.++.. . =. +..+++|.+-+....++..|+.+..
T Consensus 39 icD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~ 118 (163)
T 1x5b_A 39 ICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKS 118 (163)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 33444445544444555666677778888888888887433221 0 01 3344444443333223455555555
Q ss_pred HHHHHhc
Q psy16364 259 KVIDICS 265 (276)
Q Consensus 259 ~i~~~~~ 265 (276)
-|-..++
T Consensus 119 li~~W~~ 125 (163)
T 1x5b_A 119 LMVEWSE 125 (163)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 114
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=42.91 E-value=2.8e+02 Score=28.01 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhhCccc----hHHHHHHHHHHhcCCCHHHHHHHHHHH---HhcCCcchHHHHHHHHHHHhhhc
Q psy16364 179 MKYLGLLAMSKILKTHPKS----VQSHRDLIMQCLDDKDESIRLRALDLL---YGMVSKKTLMEIVKKLMVHMDKA 247 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~~----~~~~~~~i~~~l~~~D~~iq~ralell---~~l~~~~n~~~iv~~l~~~l~~~ 247 (276)
.|.-+|.++.+|+...|.. .++....+.+|+.|.-.++++.|.+-+ +.+.+...+++.++.|++-+...
T Consensus 150 ~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 150 EKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP 225 (986)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh
Confidence 4555666666777655533 455566666777777777777666655 44445677777777777776543
No 115
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=36.70 E-value=97 Score=21.99 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhc-CCcchHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q psy16364 215 SIRLRALDLLYGM-VSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQ 266 (276)
Q Consensus 215 ~iq~ralell~~l-~~~~n~~~iv~~l~~~l~~~~~~~~~~~l~~~i~~~~~~ 266 (276)
++|+.|-+.+-.= .+.-|+..++.++.+.-...-|...|.|+..+|-...+.
T Consensus 45 evr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL~~ 97 (101)
T 4dhx_B 45 QLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 5666666665322 356789999999999888777889999999999877653
No 116
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=35.56 E-value=42 Score=33.83 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.6
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcC
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 43 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~ 43 (276)
+..+|+.+....+.++++|.|+++.|+..|...+..++.
T Consensus 531 ~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 531 LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 456788888888999999999999999999999999885
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=35.06 E-value=1.8e+02 Score=27.95 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCC
Q psy16364 198 VQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEG 249 (276)
Q Consensus 198 ~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~~~l~~~~~ 249 (276)
.+...+.++..|+|+|.++|--|-+.+.-++.++.+..++.-++.-|..-||
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDD 348 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEEL 348 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcc
Confidence 5777888899999999999999999998899888999999999999977543
No 118
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=33.97 E-value=3.7e+02 Score=26.87 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhhhC-ccch--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Q psy16364 178 HMKYLGLLAMSKILKTH-PKSV--QSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 230 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~-~~~~--~~~~~~i~~~l~~~D~~iq~ralell~~l~~~ 230 (276)
.++-.+|.++...+.-- .+.+ ....+.++.+|.+ .++|.-|+|-+..++++
T Consensus 208 ~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHc
Confidence 34445666666655532 2222 3556667777765 67888888887666544
No 119
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=32.42 E-value=1.3e+02 Score=22.97 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=24.9
Q ss_pred ChhhHHHhHHHHHhhhcC-CChhHHhhHHHHHHhhcC
Q psy16364 8 HPKSVQSHRDLIMQCLDD-KDESIRLRALDLLYGMVS 43 (276)
Q Consensus 8 ~P~~v~~~~~~I~~~L~d-~D~sIr~~aL~Ll~~l~~ 43 (276)
.|.--.+-...|.+-|.. +++.+...||.|+-.++.
T Consensus 47 ~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvk 83 (152)
T 3rru_A 47 TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQ 83 (152)
T ss_dssp STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 344444555666667764 688888889999888874
No 120
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=32.34 E-value=94 Score=26.88 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHhhhc-CCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhh
Q psy16364 16 RDLIMQCLD-DKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMD 59 (276)
Q Consensus 16 ~~~I~~~L~-d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~ 59 (276)
.+...++|+ |+|.++-.+|+..|..++..+.+..+ .+|.+.|+
T Consensus 7 v~~f~~~l~~d~~~s~aiAAi~aL~~~l~~s~~~T~-~el~~~l~ 50 (315)
T 3ecs_A 7 IEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETI-QGLRANLT 50 (315)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC-----CHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHH
Confidence 444455665 89999999999999999987654322 44444443
No 121
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.02 E-value=1.6e+02 Score=22.12 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy16364 196 KSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLM 241 (276)
Q Consensus 196 ~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~~n~~~iv~~l~ 241 (276)
....+..+.+..-|++.+..+..+||.+|--+|...+ +.++.++.
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r 89 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQ 89 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHH
Confidence 4456778888889999999999999999866665443 33333333
No 122
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=31.43 E-value=1.7e+02 Score=22.08 Aligned_cols=52 Identities=8% Similarity=0.160 Sum_probs=28.5
Q ss_pred CCCchHHHHHHHHHHHHhhhCcc-c-----hHHHHHHHHHHhcC------CCHHHHHHHHHHHH
Q psy16364 174 RMPNHMKYLGLLAMSKILKTHPK-S-----VQSHRDLIMQCLDD------KDESIRLRALDLLY 225 (276)
Q Consensus 174 ~~~~n~ryl~L~~l~~l~~~~~~-~-----~~~~~~~i~~~l~~------~D~~iq~ralell~ 225 (276)
+..++.-+.+|..|-.+++.-+. + -.+..+.+...+.. .+..+|+|+++++.
T Consensus 49 ~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 49 SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 34445555555555555554221 1 11223334444432 58899999999984
No 123
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=30.58 E-value=55 Score=21.31 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy16364 213 DESIRLRALDLLYGMVSKKTLMEIVKKLM 241 (276)
Q Consensus 213 D~~iq~ralell~~l~~~~n~~~iv~~l~ 241 (276)
-.+++.||++|+ .-.....++.=+.||-
T Consensus 34 K~eL~~RaL~LL-~~~~s~~v~~KIrELy 61 (65)
T 1v66_A 34 KHELLTKALHLL-KAGCSPAVQMKIKELY 61 (65)
T ss_dssp HHHHHHHHHHHH-HTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHHHH
Confidence 347888898888 4433445655555553
No 124
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=30.21 E-value=90 Score=31.56 Aligned_cols=49 Identities=12% Similarity=0.294 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc--CC-c-chHHHHHHHHHHH
Q psy16364 195 PKSVQSHRDLIMQCLDDKD-ESIRLRALDLLYGM--VS-K-KTLMEIVKKLMVH 243 (276)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~D-~~iq~ralell~~l--~~-~-~n~~~iv~~l~~~ 243 (276)
.....+..+.+..+|.|+. +|+|..|-+-|.+| |. . ..+.+++..+.+-
T Consensus 838 ~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~ 891 (997)
T 1vsy_5 838 EEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG 891 (997)
T ss_dssp TTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 3455677888999999999 99999999999888 44 3 4444555544433
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.36 E-value=1.8e+02 Score=21.66 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c-----hH--HHHHHHHHHHhhhcCCchHHHHHHHH
Q psy16364 188 SKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-K-----TL--MEIVKKLMVHMDKAEGTMYRDELLSK 259 (276)
Q Consensus 188 ~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~-~-----n~--~~iv~~l~~~l~~~~~~~~~~~l~~~ 259 (276)
..+++..+.........|..-|++.++..|.+|+.++-.++.. + .+ +..+++|.+-+...+ +..|+.+..-
T Consensus 30 cD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~l 108 (140)
T 3ldz_A 30 CDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKAL 108 (140)
T ss_dssp HHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred HHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHH
Confidence 3444444443344455566667777777788887777333211 0 11 344555544443333 4666666665
Q ss_pred HHHHhc
Q psy16364 260 VIDICS 265 (276)
Q Consensus 260 i~~~~~ 265 (276)
|-..++
T Consensus 109 i~~W~~ 114 (140)
T 3ldz_A 109 MVEWTD 114 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 126
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.97 E-value=2.4e+02 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 200 SHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 200 ~~~~~i~~~l~~~D~~iq~ralell 224 (276)
.....|..-|+++++.+|.+|+.+|
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LL 69 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVM 69 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444455555666666666666665
No 127
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.73 E-value=2.1e+02 Score=22.08 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHHHhhhCcc-c----h-HHHHHHHHHHhc------CCCHHHHHHHHHHHH----hcCCcchHHHHH
Q psy16364 174 RMPNHMKYLGLLAMSKILKTHPK-S----V-QSHRDLIMQCLD------DKDESIRLRALDLLY----GMVSKKTLMEIV 237 (276)
Q Consensus 174 ~~~~n~ryl~L~~l~~l~~~~~~-~----~-~~~~~~i~~~l~------~~D~~iq~ralell~----~l~~~~n~~~iv 237 (276)
+...+..+.+|..|-.+++.-.. + . .+..+.+...+. ..+..+|+|+++++. .+.+...++...
T Consensus 61 ~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y 140 (171)
T 1juq_A 61 SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAY 140 (171)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 34445556666555555554221 1 1 122334444443 357899999999984 344444444444
Q ss_pred HHHH
Q psy16364 238 KKLM 241 (276)
Q Consensus 238 ~~l~ 241 (276)
+.|.
T Consensus 141 ~~Lk 144 (171)
T 1juq_A 141 HMLK 144 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 128
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.25 E-value=4.9e+02 Score=26.16 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHhhhcCCchHHHHH
Q psy16364 178 HMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK-KTLMEIVKKLMVHMDKAEGTMYRDEL 256 (276)
Q Consensus 178 n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~~-~n~~~iv~~l~~~l~~~~~~~~~~~l 256 (276)
..|-.+..++..+...+++.+++... ..+++.|..+|+.|..-+ ++... +.-..+++-|.+...-.+ ...|..-
T Consensus 593 ~VRraAViaLGlI~~g~~e~v~rlv~---~L~~~~d~~VR~gAalAL-Gli~aGn~~~~aid~L~~L~~D~d-~~Vrq~A 667 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYTTVPRIVQ---LLSKSHNAHVRCGTAFAL-GIACAGKGLQSAIDVLDPLTKDPV-DFVRQAA 667 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCSSHHHHTT---TGGGCSCHHHHHHHHHHH-HHHTSSSCCHHHHHHHHHHHTCSS-HHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHH---HHHhcCCHHHHHHHHHHH-HHhccCCCcHHHHHHHHHHccCCC-HHHHHHH
Confidence 34444455555444444444333222 234566777776666655 44333 223455553333332233 3666655
Q ss_pred HHHHHHHhcc
Q psy16364 257 LSKVIDICSQ 266 (276)
Q Consensus 257 ~~~i~~~~~~ 266 (276)
+.....+.-.
T Consensus 668 i~ALG~Ig~g 677 (963)
T 4ady_A 668 MIALSMILIQ 677 (963)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHhcC
Confidence 5555544443
No 129
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=25.74 E-value=3.4e+02 Score=27.38 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=35.2
Q ss_pred cccChhhHHHhHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364 5 LKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 5 ~~~~P~~v~~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
+..||+.++.-...+++.|.|++++|...|..-+..+|.+
T Consensus 531 l~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 531 LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 4568888899999999999999999999999999988863
No 130
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=25.63 E-value=38 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=23.6
Q ss_pred HhHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364 14 SHRDLIMQCLDDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 14 ~~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
+....+--.|.|..|||..+++.|+.-++.+
T Consensus 76 nvkn~l~~~l~D~rPSVkLAtisLLSiIIkK 106 (145)
T 2jby_A 76 NIKNTLTFALRDASPSVKLATLTLLASVIKK 106 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3344455568899999999999999866543
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=24.99 E-value=2.2e+02 Score=21.44 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHHHHhhhCccc------hHHHHHHHHHHhc------CCCHHHHHHHHHHHHh----cCCcchHHHHH
Q psy16364 174 RMPNHMKYLGLLAMSKILKTHPKS------VQSHRDLIMQCLD------DKDESIRLRALDLLYG----MVSKKTLMEIV 237 (276)
Q Consensus 174 ~~~~n~ryl~L~~l~~l~~~~~~~------~~~~~~~i~~~l~------~~D~~iq~ralell~~----l~~~~n~~~iv 237 (276)
+..++.-+.+|..|-.+++.-+.- -.+..+.+...+. ..+..+|+|.++++.. +.+...+..+.
T Consensus 59 ~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~Y 138 (149)
T 3g2s_A 59 SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAY 138 (149)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 344555555555555555432211 1123344444443 3688999999999843 34444444443
Q ss_pred HHH
Q psy16364 238 KKL 240 (276)
Q Consensus 238 ~~l 240 (276)
++|
T Consensus 139 ~~L 141 (149)
T 3g2s_A 139 QML 141 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 132
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=23.96 E-value=1.2e+02 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=26.0
Q ss_pred hHHHHHhhhcCCChhHHhhHHHHHHhhcCC
Q psy16364 15 HRDLIMQCLDDKDESIRLRALDLLYGMVSK 44 (276)
Q Consensus 15 ~~~~I~~~L~d~D~sIr~~aL~Ll~~l~~~ 44 (276)
.+..+..+|+.+++.+|..|++++.++|.-
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~ 126 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 357888999999999999999999998853
No 133
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.31 E-value=1.9e+02 Score=20.00 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=39.1
Q ss_pred ChhhHHHhHHH-HHhhhcCCChhHHhhHHHHHHhhcCCCcHHHHHHHHHHhhhhcCCchhHHHHHHHH
Q psy16364 8 HPKSVQSHRDL-IMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKV 74 (276)
Q Consensus 8 ~P~~v~~~~~~-I~~~L~d~D~sIr~~aL~Ll~~l~~~~n~~~iv~~L~~~L~~~~~~~~r~~li~~I 74 (276)
+-+.+..|+.. |.+.|...|..+..-.++++. +....+.++.+|..+|... ...|-.++-..+
T Consensus 14 ~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~---~~~dpk~l~~~L~~fLd~~-a~~Fv~eLW~lL 77 (92)
T 1x4q_A 14 ELDELKPWIEKTVKRVLGFSEPTVVTAALNCVG---KGMDKKKAADHLKPFLDDS-TLRFVDKLFEAV 77 (92)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---TTCCHHHHHHHHTTTTGGG-THHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---cCCCHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Confidence 33556666665 788899999988877777776 3345566666666665542 223444444333
No 134
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=22.73 E-value=1.8e+02 Score=29.39 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=27.0
Q ss_pred hCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy16364 193 THPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVS 229 (276)
Q Consensus 193 ~~~~~~~~~~~~i~~~l~~~D~~iq~ralell~~l~~ 229 (276)
.+++..+.....++..+.+..+.+|.-|+.-+..+|.
T Consensus 533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 4566666777777778877777888888877766665
No 135
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=22.04 E-value=1.2e+02 Score=24.62 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---h-HHHHHHHHHH
Q psy16364 201 HRDLIMQCLDDKDESIRLRALDLLYGMVSKK---T-LMEIVKKLMV 242 (276)
Q Consensus 201 ~~~~i~~~l~~~D~~iq~ralell~~l~~~~---n-~~~iv~~l~~ 242 (276)
....+..+|.++.+.+|.-|+|+|.++|.-+ . .+.+++.+-.
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~ 142 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 142 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 3577778899999999999999997777533 3 5555555443
No 136
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.19 E-value=4.3e+02 Score=23.36 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=44.7
Q ss_pred hhccccCCCchHHHHHHHHHHHHhhhCccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy16364 168 NIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLL 224 (276)
Q Consensus 168 lGef~~~~~~n~ryl~L~~l~~l~~~~~~~~~~~~~~i~~~l~~~D~~iq~ralell 224 (276)
+.+|....+..+|..+...+......+.+......+.+...|+|.|+.+.+|+..-.
T Consensus 68 il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~ 124 (386)
T 3o2t_A 68 IIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTM 124 (386)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345655555667777777777777788888889999999999999999999987643
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=20.16 E-value=1.1e+02 Score=28.22 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhCccch---HH--HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy16364 179 MKYLGLLAMSKILKTHPKSV---QS--HRDLIMQCLDDKDESIRLRALDLLYGM 227 (276)
Q Consensus 179 ~ryl~L~~l~~l~~~~~~~~---~~--~~~~i~~~l~~~D~~iq~ralell~~l 227 (276)
.--++..=+..+++.+|..+ .+ .+..|++.+.++|.++|..|+-=+..+
T Consensus 421 ~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 421 IIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34456666677777777543 22 478899999999999999998766443
Done!