RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16364
(276 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 89.5 bits (221), Expect = 9e-21
Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 1 MSKILKTH--PKSVQSHRDLIM-QCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVH 57
M + + ++V++H + ++ ++D S+R RA+DLLY M + +IV +++ +
Sbjct: 345 MCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSY 404
Query: 58 MDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMD 117
++ A+ R+E++ KV + + Y ++ WY+ ++ L R+ G V +++
Sbjct: 405 LETAD-YSIREEIVLKVAILAEK----YAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ 459
Query: 118 VAIRVSAVRAFAVAQMSSLLASPSPP 143
+ I V+ +A + L +P+
Sbjct: 460 IVINRDDVQGYAAKTVFEALQAPACH 485
Score = 73.3 bits (179), Expect = 2e-15
Identities = 46/286 (16%), Positives = 105/286 (36%), Gaps = 27/286 (9%)
Query: 1 MSKILKTHPKSVQSHR--DLIMQCLDDKDESIRLRALDLLYGMVSK-----KTLMEIVKK 53
+ ++ +T P V ++ L+D+ + A L+ + K KT + +
Sbjct: 164 LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVS 223
Query: 54 LMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAA 113
+ + + T +D V + +L E +
Sbjct: 224 RLSRIVTSASTDLQDYTYYFVPAPWLSVKL---------LRLLQCYPPPEDPAVRGRLTE 274
Query: 114 QMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSS 173
+ + + Q S+ A + S + R+
Sbjct: 275 CLETILNKAQEPPKSKKVQHSN--AKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH 332
Query: 174 RMPNHMKYLGLLAMSKILKTH--PKSVQSHRDLIM-QCLDDKDESIRLRALDLLYGMVSK 230
R N ++YL L +M + + ++V++H + ++ ++D S+R RA+DLLY M +
Sbjct: 333 RETN-LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR 391
Query: 231 KTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
+IV +++ +++ A+ R+E++ KV + +Y ++
Sbjct: 392 SNAQQIVAEMLSYLETAD-YSIREEIVLKVAILAE----KYAVDYT 432
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 79.1 bits (194), Expect = 3e-17
Identities = 28/205 (13%), Positives = 75/205 (36%), Gaps = 16/205 (7%)
Query: 1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDK 60
++ I++ P+ ++ + +D ++L LD++ + S+ + +++ +L + +
Sbjct: 303 INLIVQKRPEILKQEIKVFFVKYND-PIYVKLEKLDIMIRLASQANIAQVLAELKEYATE 361
Query: 61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
+ R K + + + + E ++ L++L + + + D+
Sbjct: 362 VDVDFVR-----KAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 416
Query: 121 RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSS------KIFNIKFSSR 174
+ +A + L S P + + EY++R + F F
Sbjct: 417 KYPNKYESIIATLCENLDSLDEP---DARAAMIWIVGEYAERIDNADELLESFLEGFHDE 473
Query: 175 MPNHMKYLGLLAMSKILKTHPKSVQ 199
++ L A+ K+ P Q
Sbjct: 474 STQ-VQLTLLTAIVKLFLKKPSETQ 497
Score = 66.3 bits (161), Expect = 5e-13
Identities = 39/295 (13%), Positives = 101/295 (34%), Gaps = 34/295 (11%)
Query: 1 MSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLY-------GMVSKKTLMEIVKK 53
M I K + + + +CL D+D +R A + MV + ++ ++
Sbjct: 107 MGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRD 164
Query: 54 LMVHMD--------KAEGTMYRDELLSKVIDICSQNNYQYITNF----EWYMTVLVELTR 101
L+ + A + S ++D+ QN + +T EW +++
Sbjct: 165 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLS 224
Query: 102 MEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSD 161
A + + + AV + + L S M+ + +
Sbjct: 225 -NYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP 283
Query: 162 RSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRAL 221
+ ++Y+ L ++ I++ P+ ++ + +D ++L L
Sbjct: 284 ------PLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYND-PIYVKLEKL 336
Query: 222 DLLYGMVSKKTLMEIVKKLMVHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
D++ + S+ + +++ +L + + + R K + + + + E
Sbjct: 337 DIMIRLASQANIAQVLAELKEYATEVDVDFVR-----KAVRAIGRCAIKVEQSAE 386
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 29.4 bits (64), Expect = 0.39
Identities = 27/248 (10%), Positives = 72/248 (29%), Gaps = 21/248 (8%)
Query: 17 DLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKL----------------MVHMDK 60
D + + LDD + R+ + +L + + ++ + + K
Sbjct: 22 DELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK 81
Query: 61 AEGTMYRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAI 120
+ L + ++ S + + + A +
Sbjct: 82 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-SPKIVEQSQITAFDKSTNV 140
Query: 121 RVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMK 180
R + A +V + + L P+ + + +I+ K
Sbjct: 141 RRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK 200
Query: 181 YLGLLAMSKILKTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKL 240
+ + I ++ K + L + K ++ ++ G + KTL+ ++ +
Sbjct: 201 NEEVRIEAIIGLSYRKDKRVLSVLCDE---LKKNTVYDDIIEAA-GELGDKTLLPVLDTM 256
Query: 241 MVHMDKAE 248
+ D E
Sbjct: 257 LYKFDDNE 264
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 28.9 bits (63), Expect = 0.86
Identities = 19/266 (7%), Positives = 75/266 (28%), Gaps = 17/266 (6%)
Query: 1 MSKILKTHPKSVQSHRDLIMQ----CLDDKDESIRLRALDLLYGMV---SKKTLMEIVKK 53
M+ +L + + I+ L ++R R + L +V +++++
Sbjct: 155 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 214
Query: 54 LMVHMDKAEGTMYRD---ELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGAL 110
L+ + K + + ++ + +Y+ + + E +
Sbjct: 215 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 274
Query: 111 VAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMA----EMMFDEYSDRSSKI 166
+ + + + + P + + + D+ S
Sbjct: 275 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 334
Query: 167 FNIKFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLI---MQCLDDKDESIRLRALDL 223
+ + + H + ++ + + +++E+++
Sbjct: 335 EYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHA 394
Query: 224 LYGMVSKKTLMEIVKKLMVHMDKAEG 249
++ + ++ M++ E
Sbjct: 395 YLSLLKQTRPVQSWLCDPDAMEQGET 420
Score = 27.8 bits (60), Expect = 1.8
Identities = 30/275 (10%), Positives = 89/275 (32%), Gaps = 48/275 (17%)
Query: 19 IMQCLDDKDESIRLRALDLLYGMVSK-------KTLMEIVKKLMVHMDKAEGTMYR--DE 69
+++ + D+ R A + L + K + ++VK ++ ++ G + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 70 LLSKVIDICSQNNYQYITNFEWYMTVLVELT-RMEGTRHGALVAAQMMDVAIRVSAVRAF 128
L ++ + + I + T+ + E R + + + I +
Sbjct: 68 CLGPLVSKVKEYQVETIVD-----TLCTNMLSDKEQLRDISSIG---LKTVIGELPPASS 119
Query: 129 AVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMS 188
A +++ + L+ ++ ++ ++ L M+
Sbjct: 120 GSALAANVCKKITGRLTSAIAKQEDV-----------------------SVQLEALDIMA 156
Query: 189 KILKTHPKSVQSHRDLIMQ----CLDDKDESIRLRALDLLYGMV---SKKTLMEIVKKLM 241
+L + + I+ L ++R R + L +V +++++ L+
Sbjct: 157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 216
Query: 242 VHMDKAEGTMYRDELLSKVIDICSQNNYQYITNFE 276
+ K + + + I Q ++ E
Sbjct: 217 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Score = 25.5 bits (54), Expect = 8.7
Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)
Query: 95 VLVELTRMEGTRHGALVAAQMMDVAIRVSAVRAFAVAQMSSLLASPSPPLSQPSSRMAEM 154
VL E+T ++ L + + + + V ++ + + LL + +AE
Sbjct: 892 VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 951
Query: 155 MFDEYSDRSSKIFNI--KFSSRMPNHMKYLGLLAMSKILKTHPKSVQSHRDLIM----QC 208
+ + + ++ + + A+ + HP+ + + +
Sbjct: 952 LGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT 1011
Query: 209 LDDKDESIRLRALDLLYGMVSKK 231
L+D D ++R AL K
Sbjct: 1012 LEDPDLNVRRVALVTFNSAAHNK 1034
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 27.4 bits (59), Expect = 2.1
Identities = 25/248 (10%), Positives = 80/248 (32%), Gaps = 9/248 (3%)
Query: 6 KTHPKSVQSHRDLIMQCLDDKDESIRLRALDLLYGMVSKKTLMEIVKKLMVHMDKAEGTM 65
+ ++ + +S + L ++ K +E + L + K E
Sbjct: 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPE 378
Query: 66 YRDELLSKVIDICSQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAV 125
R ++S + + + ++ V + R + ++ + V
Sbjct: 379 VRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF 438
Query: 126 RAFAVAQMSSLLASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYL--- 182
+ + L + + ++ + + +++ + I M YL
Sbjct: 439 DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRM 498
Query: 183 -GLLAMSKILKTHPKSVQSHR--DLIMQCLDDKDESIRL---RALDLLYGMVSKKTLMEI 236
L ++ + + + + + +++ D ++R ++L + ++ TL
Sbjct: 499 TTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE 558
Query: 237 VKKLMVHM 244
VK ++ +
Sbjct: 559 VKPILEKL 566
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 26.1 bits (56), Expect = 4.4
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 137 LASPSPPLSQPSSRMAEMMFDEYSDRSSKIFNIKFSSRMPNHMKYLGLLAMSKILKTHPK 196
LA+ PL + ++ + +++P++ Y A + ++ PK
Sbjct: 195 LANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPK 254
Query: 197 SVQSHRDLIMQCLDDKDESIRLRALDLL 224
+ RDL+ L + R+ A + L
Sbjct: 255 LNATGRDLLQNLL-KCNPVQRISAEEAL 281
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 25.3 bits (54), Expect = 4.9
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 23 LDDKDESIRLRALDLLYGMVSKKTLMEIVKKL----MVHMDKAEGTMYRDELLSKVIDIC 78
+ D+++ +R L + + +++ L A + + V +
Sbjct: 1 MADENKWVRRDVSTAL-SRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLI 59
Query: 79 SQNNYQYITNFEWYMTVLVELTRMEGTRHGALVAAQMMDVAIRVSAVRA 127
L ++ E R A+ R AV
Sbjct: 60 KLLEDDSGFVRSGAARSLEQI-GGERVRAAMEKLAETGTGFARKVAVNY 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.132 0.368
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 957,795
Number of extensions: 41748
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 29
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)