BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16366
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 162/387 (41%), Gaps = 87/387 (22%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDL--LYC 121
FSL+ L + L++ RRYG+ GPNG GK+TL+R IA + P+ + +Y
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV 500
Query: 122 EQEVEA--SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
E +++ SD S ++ V S + E+ ++L DE+ ++ A
Sbjct: 501 EHDIDGTHSDTSVLDFVFE------------SGVGTKEAIKDKLIEFGFTDEMIAMPISA 548
Query: 180 AE-------PRARRILAGLGFTTIYIPSSRVHEIMRTW--------KKTLLVVSHDQSFL 224
AR +L + P++ + + W T + +SHD FL
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 608
Query: 225 NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 282
+N+C II+ + KL YKGNFT F KK K E +L+ K +G+ +K+
Sbjct: 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 668
Query: 283 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 342
KA ++ + ++
Sbjct: 669 KA--------------------------------------------------IVKVTNME 678
Query: 343 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI 401
F YPG K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI 738
Query: 402 GKFDQHSGEHL--FPDDTPCEYLMKLF 426
QH+ H+ D TP EY+ F
Sbjct: 739 AYIKQHAFAHIESHLDKTPSEYIQWRF 765
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-KGELT--PNKGELRKSPRLRIGK 403
G K+LL K L R + GPNG GKST + + G++ P + E R
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV------- 498
Query: 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+ +H + D + +++ + E + +L FG +PI LSGG K ++A
Sbjct: 499 YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLA 558
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCE-LWA 522
LA L N DIL+LDEPTN+LD ++ L + I +SHD + + CE +
Sbjct: 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL-DNVCEYIIN 617
Query: 523 LEKKNIRKFNGDFDDYREK 541
E +RK+ G+F ++ +K
Sbjct: 618 YEGLKLRKYKGNFTEFVKK 636
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 436 QLGMFGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
M GL P IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++
Sbjct: 883 HCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK 942
Query: 495 AIKNYQGGVILVSHDERLIRETDCELWALE 524
A+K ++GGVI+++H + E+WA++
Sbjct: 943 ALKEFEGGVIIITHSAEFTKNLTEEVWAVK 972
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 60 IKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+KV N G + N Q + R ++GPNG GK+TL+
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 157/380 (41%), Gaps = 73/380 (19%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDL--LYC 121
FSL+ L + L++ RRYG+ GPNG GK+TL R IA + P+ + +Y
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 500
Query: 122 EQEVEA--SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
E +++ SD S ++ V + KE K + E G + L S
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGVGT----KEAIKDKLIEFGFTDEXIAXPISAL-SGGWKX 555
Query: 180 AEPRARRILAGLGFTTIYIPSSRVHEIMRTW--------KKTLLVVSHDQSFLNNICTDI 231
AR +L + P++ + + W T + +SHD FL+N+C I
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYI 615
Query: 232 IHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKEKAERQHS 289
I+ + KL YKGNFT F KK K E +L+ K +G+ +K+KA
Sbjct: 616 INYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKA----- 670
Query: 290 HKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVTFGYPG-G 348
++ + + F YPG
Sbjct: 671 ---------------------------------------------IVKVTNXEFQYPGTS 685
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408
K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI QH+
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 745
Query: 409 GEHLFP--DDTPCEYLMKLF 426
H+ D TP EY+ F
Sbjct: 746 FAHIESHLDKTPSEYIQWRF 765
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 12/199 (6%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-KGELT--PNKGELRKSPRLRIGK 403
G K+LL K L R + GPNG GKST + G++ P + E R
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTV------- 498
Query: 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+ +H + D + +++ + E + +L FG PI LSGG K ++A
Sbjct: 499 YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLA 558
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCE-LWA 522
LA L N DIL+LDEPTN+LD ++ L + I +SHD + + CE +
Sbjct: 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL-DNVCEYIIN 617
Query: 523 LEKKNIRKFNGDFDDYREK 541
E +RK+ G+F ++ +K
Sbjct: 618 YEGLKLRKYKGNFTEFVKK 636
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 510
IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++GGVI+++H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 511 RLIRETDCELWALE 524
+ E+WA++
Sbjct: 959 EFTKNLTEEVWAVK 972
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 60 IKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+KV N G + N Q + R ++GPNG GK+TL+
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 157/380 (41%), Gaps = 73/380 (19%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDL--LYC 121
FSL+ L + L++ RRYG+ GPNG GK+TL R IA + P+ + +Y
Sbjct: 435 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 494
Query: 122 EQEVEA--SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
E +++ SD S ++ V + KE K + E G + L S
Sbjct: 495 EHDIDGTHSDTSVLDFVFESGVGT----KEAIKDKLIEFGFTDEXIAXPISAL-SGGWKX 549
Query: 180 AEPRARRILAGLGFTTIYIPSSRVHEIMRTW--------KKTLLVVSHDQSFLNNICTDI 231
AR +L + P++ + + W T + +SHD FL+N+C I
Sbjct: 550 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYI 609
Query: 232 IHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKEKAERQHS 289
I+ + KL YKGNFT F KK K E +L+ K +G+ +K+KA
Sbjct: 610 INYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKA----- 664
Query: 290 HKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVTFGYPG-G 348
++ + + F YPG
Sbjct: 665 ---------------------------------------------IVKVTNXEFQYPGTS 679
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408
K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI QH+
Sbjct: 680 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 739
Query: 409 GEHL--FPDDTPCEYLMKLF 426
H+ D TP EY+ F
Sbjct: 740 FAHIESHLDKTPSEYIQWRF 759
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 12/199 (6%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-KGELT--PNKGELRKSPRLRIGK 403
G K+LL K L R + GPNG GKST + G++ P + E R
Sbjct: 440 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTV------- 492
Query: 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+ +H + D + +++ + E + +L FG PI LSGG K ++A
Sbjct: 493 YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLA 552
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCE-LWA 522
LA L N DIL+LDEPTN+LD ++ L + I +SHD + + CE +
Sbjct: 553 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL-DNVCEYIIN 611
Query: 523 LEKKNIRKFNGDFDDYREK 541
E +RK+ G+F ++ +K
Sbjct: 612 YEGLKLRKYKGNFTEFVKK 630
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 510
IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++GGVI+++H
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 511 RLIRETDCELWALE 524
+ E+WA++
Sbjct: 953 EFTKNLTEEVWAVK 966
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 60 IKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+KV N G + N Q + R ++GPNG GK+TL+
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 710
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 28/188 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------- 399
G V L+ VN ++ R ++GP+G GK+TF+ ++ G P+ GEL RL
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 400 -------RIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQL----GMFGLPSY 445
+IG Q L+P+ T E + + + E+ R+++ + +
Sbjct: 76 IVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GV 503
+ P R+LSGGQ+ RVALA + +P +L+LDEP +NLD D+ +K Q GV
Sbjct: 134 LNHFP-RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 504 IL--VSHD 509
L VSHD
Sbjct: 193 TLLVVSHD 200
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 58 VDIKVENFS-LSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
V I V+N S + KG V N N+ I +G R+G++GP+G GKTT +R IA L +PS+
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA--GLDVPST 59
Query: 116 IDLLYCEQEVEAS 128
+L + ++ V ++
Sbjct: 60 GELYFDDRLVASN 72
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 28/188 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------- 399
G V L+ VN ++ R ++GP+G GK+TF+ ++ G P+ GEL RL
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 400 -------RIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQL----GMFGLPSY 445
+IG Q L+P+ T E + + + E+ R+++ + +
Sbjct: 76 IVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GV 503
+ P R+LSG Q+ RVALA + +P +L+LDEP +NLD D+ +K Q GV
Sbjct: 134 LNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 504 IL--VSHD 509
L VSHD
Sbjct: 193 TLLVVSHD 200
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 58 VDIKVENFS-LSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
V I V+N S + KG V N N+ I +G R+G++GP+G GKTT +R IA L +PS+
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA--GLDVPST 59
Query: 116 IDLLYCEQEVEAS 128
+L + ++ V ++
Sbjct: 60 GELYFDDRLVASN 72
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------RKSP 397
G P K LE V+ ++ + + G G GKST L ++ G + P G++ +K
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
Query: 398 RLR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP--SYAHT 448
+R IG Q+ + F + E + N P ++ + GL S+
Sbjct: 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVIL 505
+P LSGG+K RVA+A + ++ PDILILDEP LD E L ++ ++ VIL
Sbjct: 135 VPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193
Query: 506 VSHD-ERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
+SHD E +I D + LEK + F+G ++ EK
Sbjct: 194 ISHDIETVINHVD-RVVVLEKGK-KVFDGTRMEFLEK 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 25/235 (10%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-------- 396
YPGG + V+F + V L+GP+G GK+T L L+ G P KG++
Sbjct: 24 YPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP 83
Query: 397 PRLR-IGKFDQHSG--EHLFPDDTPCEYLMKLFNLPYE----KSRRQLGMFGLPSYAHTI 449
P+ R +G Q+ +H+ D + ++ +P + + R L L SYA+
Sbjct: 84 PQKRNVGLVFQNYALFQHMTVYDN-VSFGLREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGV--IL 505
P +LSGGQ+ RVALA P +L+ DEP +D + L ++ + GV +
Sbjct: 143 P-HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 506 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK----LLTSLGEAMVYNPSV 556
V+HD+ E + L + N+ +F + Y + + + +GE+ V+ +V
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGESNVWTRAV 256
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
G + QI G GL+GP+G GKTT+LR IA
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------RKSP 397
G P K LE V+ ++ + + G G GKST L ++ G + P G++ +K
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 76
Query: 398 RLR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP--SYAHT 448
+R IG Q+ + F + E + N P ++ + GL S+
Sbjct: 77 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVIL 505
+P LSGG+K RVA+A + ++ PDILILDEP LD E L ++ ++ VIL
Sbjct: 137 VPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 195
Query: 506 VSHD-ERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
+SHD E +I D + LEK + F+G ++ EK
Sbjct: 196 ISHDIETVINHVD-RVVVLEKGK-KVFDGTRMEFLEK 230
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 31/220 (14%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+L V F Y + +L ++F S +A GP+G GKST +LL+ P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 395 -----------KSPRLRIGKFDQHSG-------EHL---FPDDTPCEYLMKLFNLPYEKS 433
++ R +IG Q S E+L D E L ++ +L + +S
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 434 RRQLGMFGLPSYAHT-IPIRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
+ +P +T + R +SGGQ+ R+A+A L NP IL+LDE T +LD ES
Sbjct: 121 FVE----NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 491 ALAEAIKNYQGG--VILVSHDERLIRETDCELWALEKKNI 528
+ +A+ + G ++++H I + D +++ +EK I
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDAD-KIYFIEKGQI 215
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRK 395
L+ V+F Y G VL + VN + +VG NG GK+T L +L G L GE L
Sbjct: 14 LNSVSFRYNGDYVL-KDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDG 71
Query: 396 SP------RLRIGKFDQHSGEHLFPD--DTPCEYLMKLFNLPYEKSRRQ----LGMFGLP 443
SP R +G Q+ + + + +++ L + R++ L + GL
Sbjct: 72 SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLS 131
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQ 500
A P+ +LSGGQK R+A+A + + L LDEP + LD S I + E++KN
Sbjct: 132 GLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG 190
Query: 501 GGVILVSHDERLIRETD 517
G+ILV+H+ + + D
Sbjct: 191 KGIILVTHELEYLDDMD 207
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ + S G + + N + +G+ Y +VG NG GKTTLL+ +A
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILA 58
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E L K
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEY--EGTVYELLSK 426
Query: 425 L----FNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
+ N + K+ + LG+ L + + DLSGG+ RVA+A L + DI +LD
Sbjct: 427 IDSSKLNSNFYKTELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
Query: 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 513
EP+ LD+E A++ AI++ + ++V HD +I
Sbjct: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF---------PD 415
V +VGPNG GK+T + +L G+L PN E S I F + ++ F P
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 165
Query: 416 DTPCEYLMKLFNLPYEKSRR------QLGMFGLPSYAHTI------PIRDLSGGQKARVA 463
P +Y+ L K R ++G F + + LSGG+ RVA
Sbjct: 166 VKP-QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 224
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHD 509
+A L DEP++ LDI +A I+ N V++V HD
Sbjct: 225 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIA 106
+I G G+VGPNG GKTT ++ +A
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLA 389
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 71 GVELFHNANLQIA-SGRRYGLVGPNGHGKTTLLRHIA 106
GV F L I G G+VGPNG GKTT ++ +A
Sbjct: 88 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 124
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E L K
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEY--EGTVYELLSK 440
Query: 425 L----FNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
+ N + K+ + LG+ L + + DLSGG+ RVA+A L + DI +LD
Sbjct: 441 IDSSKLNSNFYKTELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 513
EP+ LD+E A++ AI++ + ++V HD +I
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF---------PD 415
V +VGPNG GK+T + +L G+L PN E S I F + ++ F P
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 416 DTPCEYLMKLFNLPYEKSRR------QLGMFGLPSYAHTI------PIRDLSGGQKARVA 463
P +Y+ L K R ++G F + + LSGG+ RVA
Sbjct: 180 VKP-QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 238
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHD 509
+A L DEP++ LDI +A I+ N V++V HD
Sbjct: 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIA 106
+I G G+VGPNG GKTT ++ +A
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLA 403
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 71 GVELFHNANLQIA-SGRRYGLVGPNGHGKTTLLRHIA 106
GV F L I G G+VGPNG GKTT ++ +A
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 138
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 45/238 (18%)
Query: 335 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
++ L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ P +G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 392 E---------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------ 430
E L K R +IG Q +L P T E + Y
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSG 118
Query: 431 -EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
E+ +R L + +A+ P LSGGQ+ RVA+A NNP I++ D+PT LD
Sbjct: 119 EERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 486 IESIDALAEAIK--NYQGG--VILVSHD-------ERLIRETDCELWALEKKNIRKFN 532
++ + + + +K N + G V++V+HD ER+I D E+ EK +R F+
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK--LRGFD 233
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 60 IKVENFSLSAK-GVELFH---NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
IK++N + + K G E+ + N NL I G ++GP+G GK+T+L I
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 39/213 (18%)
Query: 338 LHDVTFGYPGGKVL--LEKVNFGLDMESRVALVGPNGIGKST-------FLNLLKGELTP 388
+V F YP + L+ ++F ++ +ALVGP+G GKST F + L GE+
Sbjct: 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138
Query: 389 NKGELR----KSPRLRIGK-------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437
+ E++ + R +I FD E++ P M E++ R
Sbjct: 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA----QVEEAAR-- 1192
Query: 438 GMFGLPSYAHTIP------IRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+ + ++ +P + D LSGGQK R+A+A + NP IL+LDE T+ LD E
Sbjct: 1193 -LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 488 SIDALAEAIKNYQGG--VILVSHDERLIRETDC 518
S + EA+ + G I+++H + DC
Sbjct: 1252 SEKVVQEALDRAREGRTCIVIAHRLNTVMNADC 1284
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 27/207 (13%)
Query: 336 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGEL 386
+ + +V F YP +L +N ++ VALVG +G GKST ++LL KG++
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 387 TPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442
T + ++R + R + Q LF + + E+ M
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPA--LFNCTIEENISLGKEGITREEMVAACKMANA 533
Query: 443 PSYAHTIP------IRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
+ T+P + D LSGGQK R+A+A + NP IL+LDE T+ LD ES +
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593
Query: 493 AEAIKNYQGG--VILVSHDERLIRETD 517
+A+ G I+++H IR D
Sbjct: 594 QQALDKAAKGRTTIIIAHRLSTIRNAD 620
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 59 DIKVENFSL---SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
DI VEN S V + NL++ +G+ LVG +G GK+T++
Sbjct: 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII 461
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 25/189 (13%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLK----GELTPNKGELRKSPRLRIGK 403
+L+ +N + V ++GP+G GKSTFL NLL+ GE+ + L K+ + K
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL-KAKDTNLNK 76
Query: 404 FDQHSGE-----HLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 450
+ G +LFP T + MK+ P EK+ + L GL AH P
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 136
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVS 507
LSGGQ RVA+A P I++ DEPT+ LD E + + +K N +++V+
Sbjct: 137 -DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 195
Query: 508 HDERLIRET 516
H+ RE
Sbjct: 196 HEMGFAREV 204
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I V S +E+ N+ I G ++GP+G GK+T LR
Sbjct: 4 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLR 47
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 41/214 (19%)
Query: 336 LGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELT 387
L +VTF YPG +V L +N + VALVG +G GKST +L+ +G +
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 388 PNKGELRK----SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGM 439
+ +LR+ S R ++ Q+ HLF D N+ Y E SR Q+
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNV--HLFNDTVAN-------NIAYARTEEYSREQIEE 452
Query: 440 FGLPSYAH-----------TIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+YA TI + LSGGQ+ R+A+A L + ILILDE T+ LD
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 486 IESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
ES A+ A+ Q ++++H I + D
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTIEQAD 546
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 TVDDNSVDIKVENFSLSAKGVEL--FHNANLQIASGRRYGLVGPNGHGKTTL 101
+D + D++ N + + G E+ N NL+I +G+ LVG +G GK+T+
Sbjct: 334 VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTI 385
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 39/193 (20%)
Query: 338 LHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPN 389
+VTF YPG V L +N + VALVG +G GKST +L+ +GE+ +
Sbjct: 344 FRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMD 403
Query: 390 KGELRK----SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK----SRRQLGMFG 441
+LR+ S R ++ Q+ HLF D N+ Y + SR Q+
Sbjct: 404 GHDLREYTLASLRNQVALVSQNV--HLFNDTVAN-------NIAYARTEQYSREQIEEAA 454
Query: 442 LPSYAH-----------TIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+YA T+ + LSGGQ+ R+A+A L + ILILDE T+ LD E
Sbjct: 455 RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 488 SIDALAEAIKNYQ 500
S A+ A+ Q
Sbjct: 515 SERAIQAALDELQ 527
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
V+ + F+ + V N NL+I +G+ LVG +G GK+T+
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTI 385
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 25/189 (13%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLK----GELTPNKGELRKSPRLRIGK 403
+L+ +N + V ++GP+G GKSTFL NLL+ GE+ + L K+ + K
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL-KAKDTNLNK 97
Query: 404 FDQHSGE-----HLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 450
+ G +LFP T + MK+ P EK+ + L GL AH P
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVS 507
LSGGQ RVA+A P I++ DEPT+ LD E + + +K N +++V+
Sbjct: 158 -DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
Query: 508 HDERLIRET 516
H+ RE
Sbjct: 217 HEMGFAREV 225
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I V S +E+ N+ I G ++GP+G GK+T LR
Sbjct: 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLR 68
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 45/238 (18%)
Query: 335 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
++ L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ P +G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 392 E---------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------ 430
E L K R +IG Q +L P T E + Y
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSG 118
Query: 431 -EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
E+ +R L + +A+ P LSGGQ+ RVA+A NNP I++ D+PT LD
Sbjct: 119 EERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 486 IESIDALAEAIK--NYQGG--VILVSHD-------ERLIRETDCELWALEKKNIRKFN 532
++ + + + +K N + G V++V+HD ER+I D E+ EK +R F+
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK--LRGFD 233
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 60 IKVENFSLSAK-GVELFH---NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+K++N + + K G E+ + N NL I G ++GP+G GK+T+L I
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 45/235 (19%)
Query: 338 LHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
L +VT Y G+ + L+ VN + V++ GP+G GKST LN++ P +GE
Sbjct: 4 LKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVY 63
Query: 393 -------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-------EK 432
L K R +IG Q +L P T E + Y E+
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 433 SRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+R L +A+ P LSGGQ+ RVA+A NNP I++ DEPT LD ++
Sbjct: 122 RKRALECLKXAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKT 180
Query: 489 IDALAEAIK--NYQGG--VILVSHD-------ERLIRETDCELWALEKKNIRKFN 532
+ + + +K N + G V++V+HD ER+I D E+ EK +R F+
Sbjct: 181 GEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK--LRGFD 233
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 60 IKVENFSLSAK-GVELFH---NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
IK++N + + K G E+ + N NL I G + GP+G GK+T L I
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIG 52
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 90/208 (43%), Gaps = 37/208 (17%)
Query: 340 DVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKG 391
DVTF Y G K L V+F + VALVG +G GKST NL G + +
Sbjct: 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405
Query: 392 ELR--KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSY 445
++R K LR HLF D N+ Y E +R Q+ ++
Sbjct: 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIAN-------NIAYAAEGEYTREQIEQAARQAH 458
Query: 446 A----HTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
A +P LSGGQ+ RVA+A L + +LILDE T+ LD ES A
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 492 LAEAIKNYQGG--VILVSHDERLIRETD 517
+ A+ Q V++++H I + D
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQAD 546
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
+ VD+K F+ K + + I G+ LVG +G GK+T+
Sbjct: 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTI 385
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 18/142 (12%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP--DDTPCEYL 422
+ ++GPNGIGK+TF +L GE+T ++G + +P +I + + +FP D T +YL
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSV--TPEKQILSYKP---QRIFPNYDGTVQQYL 351
Query: 423 -------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475
+ + +E+ ++L + L + DLSGG+ ++ +A D+
Sbjct: 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESN----VNDLSGGELQKLYIAATLAKEADLY 407
Query: 476 ILDEPTNNLDIESIDALAEAIK 497
+LD+P++ LD+E +A+AIK
Sbjct: 408 VLDQPSSYLDVEERYIVAKAIK 429
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 40/177 (22%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---FDQHSGEHL--------- 412
+ ++G NG+GK+T L +L GE+ PN G+ P ++GK + G+ +
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGD----PNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 413 -----------------FPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDL 454
F T E L K+ ++ + L M L + I L
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI----L 139
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 509
SGG R+ +A L D+ I D+P++ LD+ +A+AI+ VI+V HD
Sbjct: 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID-----LLYCEQEVEASDDSAV 133
N + G G++GPNG GKTT R + A S+ L Y Q + + D V
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 134 NIVL-SADKNRVK----LLKECSK---LER-DESGDNQL---RLTEVYDELKSIEADAAE 181
L +A K+ + +E +K L R ES N L L ++Y I A A+
Sbjct: 348 QQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY-----IAATLAK 402
Query: 182 PRARRIL----AGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDII 232
+L + L YI + + + R K ++ HD S + I II
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII 457
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGPNGIGK+TF+ L G P +G++ L + Q+ + T E L K
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD--LTVAYKPQYIKADY--EGTVYELLSK 370
Query: 425 L----FNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
+ N + K+ + LG+ L + + +LSGG+ RVA+A L + DI +LD
Sbjct: 371 IDASKLNSNFYKTELLKPLGIIDL----YDREVNELSGGELQRVAIAATLLRDADIYLLD 426
Query: 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
EP+ LD+E A++ AI++ + ++V HD
Sbjct: 427 EPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 57/185 (30%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE-HLFPDDTPCEYLM 423
V +VGPNG GKST + +L G+L PN G D G F + Y
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPN----------LCGDNDSWDGVIRAFRGNELQNYFE 99
Query: 424 KLFNLPYEKSRRQLGMFGLPSYAHTIP--------------------------------- 450
KL N ++ P Y IP
Sbjct: 100 KLKN-------GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL 152
Query: 451 ---IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVI 504
I+ LSGG+ RVA+A L N DEP++ LDI A AI+ V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 505 LVSHD 509
+V HD
Sbjct: 213 VVEHD 217
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIA 106
+I G G+VGPNG GKTT ++ +A
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLA 333
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL- 393
+L + ++ + Y G L+ +N + A++G NG+GKST G L P+ G +
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 394 ---------RKSP---RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQ--- 436
RK R IG Q LF + N LP ++ R++
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 437 -LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDA 491
L G+ + P LS GQK RVA+A + + P +LILDEPT LD E +
Sbjct: 127 ALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 492 LAEAIKNYQGGVILVSHD 509
L E K +I+ +HD
Sbjct: 186 LVEMQKELGITIIIATHD 203
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 43/227 (18%)
Query: 338 LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
DV+F YP ++L+ + F L ALVGPNG GKST LL+ P G+L
Sbjct: 17 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 76
Query: 394 --RKSPRLR----------IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 441
+ P+ +G+ Q G L + + L + + ++
Sbjct: 77 DGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA--------YGLTQKPTMEEITAAA 128
Query: 442 LPSYAHT----IPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+ S AH+ +P LSGGQ+ VALA + P +LILD+ T+ LD
Sbjct: 129 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 188
Query: 488 SI----DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530
S L E+ + Y V+L++ L+ + D L+ LE IR+
Sbjct: 189 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILF-LEGGAIRE 234
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 341 VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
V+F Y + +L+ +N ++ VA VG +G GKST +NL+ G+
Sbjct: 345 VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404
Query: 393 ----LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT 448
L S R +IG Q + LF D L+ E+ M +
Sbjct: 405 IKDFLTGSLRNQIGLVQQDN--ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMN 462
Query: 449 IPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
+P LSGGQK R+++A + LNNP ILILDE T+ LD+ES + EA+
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 338 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ +VT F GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S
Sbjct: 21 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 80
Query: 397 PRLRI---------GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFG 441
R+ G ++ + D+ ++K L EK LG G
Sbjct: 81 GRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+ LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 141 IT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 175
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 26/208 (12%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLL-------KGEL 386
L +V F YP + +F L + S ALVGP+G GKST L+LL G +
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 387 TPNKGELRK-SP---RLRIGKFDQHS-------GEHL-FPDDTPCEYLMKLFNLPYEKSR 434
+ + ++R+ +P R +IG Q E++ + D P + E +
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 435 RQLGMFGLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ P +T+ LSGGQK R+A+A L NP IL+LDE T+ LD E+
Sbjct: 462 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 521
Query: 492 LAEAIKNYQGG--VILVSHDERLIRETD 517
+ EA+ G V++++H I+ +
Sbjct: 522 VQEALDRLMDGRTVLVIAHRLSTIKNAN 549
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 55 DNSVDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+++ K +F+ A+ V +F + +L I SG LVGP+G GK+T+L
Sbjct: 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 338 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ +VT F GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68
Query: 397 PRLRI---------GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFG 441
R+ G ++ + D+ ++K L EK LG G
Sbjct: 69 GRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+ LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 129 IT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 26/208 (12%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLL-------KGEL 386
L +V F YP + +F L + S ALVGP+G GKST L+LL G +
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 387 TPNKGELRK-SP---RLRIGKFDQHS-------GEHL-FPDDTPCEYLMKLFNLPYEKSR 434
+ + ++R+ +P R +IG Q E++ + D P + E +
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 435 RQLGMFGLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ P +T+ LSGGQK R+A+A L NP IL+LDE T+ LD E+
Sbjct: 493 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 552
Query: 492 LAEAIKNYQGG--VILVSHDERLIRETD 517
+ EA+ G V++++H I+ +
Sbjct: 553 VQEALDRLMDGRTVLVIAHHLSTIKNAN 580
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 56 NSVDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+++ K +F+ A+ V +F + +L I SG LVGP+G GK+T+L
Sbjct: 371 GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 418
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 47/212 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLK-------- 383
+ L++V+ P G++ +G+ +G +G GKST + NLL+
Sbjct: 18 IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 384 ---GELTP-NKGELRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
ELT ++ EL K+ R +IG QH S +F + ++L N P ++ +R
Sbjct: 64 VDGQELTTLSESELTKARR-QIGMIFQHFNLLSSRTVFGN---VALPLELDNTPKDEVKR 119
Query: 436 Q----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L + GL + P +LSGGQK RVA+A +NP +L+ DE T+ LD + +
Sbjct: 120 RVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 492 LAEAIK--NYQGG--VILVSHDERLI-RETDC 518
+ E +K N + G ++L++H+ ++ R DC
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDC 210
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
IK+ N F + ++ +N +L + +G+ YG++G +G GK+TL+R +
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 51
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 47/212 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLK-------- 383
+ L++V+ P G++ +G+ +G +G GKST + NLL+
Sbjct: 41 IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 384 ---GELTP-NKGELRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
ELT ++ EL K+ R +IG QH S +F + ++L N P ++ +R
Sbjct: 87 VDGQELTTLSESELTKARR-QIGXIFQHFNLLSSRTVFGN---VALPLELDNTPKDEVKR 142
Query: 436 Q----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L + GL + P +LSGGQK RVA+A +NP +L+ D+ T+ LD + +
Sbjct: 143 RVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 492 LAEAIK--NYQGG--VILVSHDERLI-RETDC 518
+ E +K N + G ++L++H+ ++ R DC
Sbjct: 202 ILELLKDINRRLGLTILLITHEXDVVKRICDC 233
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 54 DDNSVDIKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
DD+ IK+ N F + ++ +N +L + +G+ YG++G +G GK+TL+R +
Sbjct: 19 DDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 74
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 33/168 (19%)
Query: 338 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ +VT F GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68
Query: 397 PRLRIGKFDQHSGEHLFP------------DDTPCEYLMKLFNLP------YEKSRRQLG 438
R+ Q S + P D+ ++K L EK LG
Sbjct: 69 GRISF--CSQFS--WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
G+ LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 125 EGGIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 162
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
L + D++ GY K +LE++ ++ + V GPNGIGK+T L + L P KGE+
Sbjct: 11 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68
Query: 394 RKSPRLRI-GKFDQHSGEHLFPDDTPCE-YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
P ++ GK E + P E YL + +L K + M L S + +
Sbjct: 69 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES-VEVLDL 127
Query: 452 R----DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGV 503
+ +LS G RV LA L N +I +LD+P +D +S + ++ E +K + G+
Sbjct: 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK--EKGI 185
Query: 504 ILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536
+++S E L + C++ +N+ K++ D
Sbjct: 186 VIISSREEL---SYCDV----NENLHKYSTKID 211
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107
+ + I G GPNG GKTTLL+ I+T
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL- 399
+ L+ V+ + VA++GPNG GKST L LL G L+P+ GE P+
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 400 -RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI-----RD 453
R + E FP ++++ PY S+ + + + + + + R
Sbjct: 84 ARTRAVMRQYSELAFPFSV--SEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV 141
Query: 454 LSGGQKARVALAELTLN------NPDILILDEPTNNLDI----ESIDALAEAIKNYQGGV 503
LSGG++ RV LA + P L LDEPT+ LD+ ++ L + + V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 504 ILVSHD 509
V HD
Sbjct: 202 CCVLHD 207
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
L ++ +L IASG ++GPNG GK+TLLR
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLR 55
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE------ 420
L+GP+G GK+T L ++ G P++G++ +L D G + P D
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA---DPEKGIFVPPKDRDIAMVFQSY 90
Query: 421 -------------YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+ +KL +P + + R + GL + P R+LSGGQ+ RVA
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVA 149
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GV--ILVSHDE 510
L + P + ++DEP +NLD + + +K Q GV I V+HD+
Sbjct: 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V +L++ G L+GP+G GKTT LR IA
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 47/212 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLK-------- 383
+ L++V+ P G++ +G+ +G +G GKST + NLL+
Sbjct: 41 IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 384 ---GELTP-NKGELRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
ELT ++ EL K+ R +IG QH S +F + ++L N P ++ +R
Sbjct: 87 VDGQELTTLSESELTKARR-QIGMIFQHFNLLSSRTVFGN---VALPLELDNTPKDEVKR 142
Query: 436 Q----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L + GL + P +LSGGQK RVA+A +NP +L+ D+ T+ LD + +
Sbjct: 143 RVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 492 LAEAIK--NYQGG--VILVSHDERLI-RETDC 518
+ E +K N + G ++L++H+ ++ R DC
Sbjct: 202 ILELLKDINRRLGLTILLITHEMDVVKRICDC 233
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 54 DDNSVDIKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
DD+ IK+ N F + ++ +N +L + +G+ YG++G +G GK+TL+R +
Sbjct: 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 74
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKGEL--- 393
V F YP + V GL +E + +ALVG +G GKST + LL+ P G +
Sbjct: 1036 VVFNYPTRPSI--PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 394 -RKSPRLRIGKFDQHSG----EHLFPDDTPCEYLMKLFN---LPYEKSRRQLGMFGLPSY 445
++ +L + G E + D + E + N + YE+ R + +
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 446 AHTIPIR----------DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
++P + LSGGQK R+A+A + P IL+LDE T+ LD ES + EA
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 496 IKNYQGG--VILVSHDERLIRETD 517
+ + G I+++H I+ D
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNAD 1237
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 336 LGLHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-------GEL 386
L ++ F YP K +L+ +N + VALVG +G GKST + L++ G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 387 TPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----------EK 432
+ + ++R + R IG Q E + T E N+ Y EK
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQ---EPVLFATTIAE------NIRYGREDVTMDEIEK 498
Query: 433 SRRQLGMFG----LPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ ++ + LP T+ LSGGQK R+A+A + NP IL+LDE T+ LD
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 486 IESIDALAEAIKNYQGG--VILVSHDERLIRETDC 518
ES + A+ + G I+++H +R D
Sbjct: 559 TESEAVVQAALDKAREGRTTIVIAHRLSTVRNADV 593
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
S K V++ NL++ SG+ LVG +G GK+T ++
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKGEL--- 393
V F YP + V GL +E + +ALVG +G GKST + LL+ P G +
Sbjct: 1036 VVFNYPTRPSI--PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 394 -RKSPRLRIGKFDQHSG----EHLFPDDTPCEYLMKLFN---LPYEKSRRQLGMFGLPSY 445
++ +L + G E + D + E + N + YE+ R + +
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 446 AHTIPIR----------DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
++P + LSGGQK R+A+A + P IL+LDE T+ LD ES + EA
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 496 IKNYQGG--VILVSHDERLIRETD 517
+ + G I+++H I+ D
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNAD 1237
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 336 LGLHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-------GEL 386
L ++ F YP K +L+ +N + VALVG +G GKST + L++ G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 387 TPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----------EK 432
+ + ++R + R IG Q E + T E N+ Y EK
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQ---EPVLFATTIAE------NIRYGREDVTMDEIEK 498
Query: 433 SRRQLGMFG----LPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ ++ + LP T+ LSGGQK R+A+A + NP IL+LDE T+ LD
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 486 IESIDALAEAIKNYQGG--VILVSHDERLIRETDC 518
ES + A+ + G I+++H +R D
Sbjct: 559 TESEAVVQAALDKAREGRTTIVIAHRLSTVRNADV 593
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
S K V++ NL++ SG+ LVG +G GK+T ++
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
+V F Y G+ L+ V+F + +ALVGP+G GKST L LL + G +R
Sbjct: 56 FENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115
Query: 395 --------KSPRLRIGKFDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQLG---- 438
S R IG Q + + +DT + + + N E + + G
Sbjct: 116 QDISQVTQASLRSHIGVVPQDT---VLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172
Query: 439 MFGLP-SYAHTIPIRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
+ P Y + R LSGG+K RVA+A L P I++LDE T+ LD + A+ +
Sbjct: 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232
Query: 496 IKNYQGG--VILVSH 508
+ I+V+H
Sbjct: 233 LAKVCANRTTIVVAH 247
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+ EN S A G E + + + G+ LVGP+G GK+T+LR
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILR 98
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 33/162 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G L +N + +AL+GP+G GKST L + G P G++ FD+
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY---------FDE 64
Query: 407 HSGEHLFPDDT------------PCEYLMKLFNLPYE-----------KSRRQLGMFGLP 443
L P D P + K P E K R M +
Sbjct: 65 KDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID 124
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ P + LSGGQ+ RVA+A + P++L+LDEP +NLD
Sbjct: 125 KLLNRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 117
V+IK+EN +N NL+I G L+GP+G GK+TLL IA + P+S
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA--GIYKPTSGK 59
Query: 118 LLYCEQEV 125
+ + E++V
Sbjct: 60 IYFDEKDV 67
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425
L+GP G GKS FL L+ G + P++GE+R + + G P D + +
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 426 F-NLPY--------EKSRRQLGMFGLPSYAHTI---PIRDLSGGQKARVALAELTLNNPD 473
+ N+ Y E+ RR M AH + P R LSGG++ RVALA + P
Sbjct: 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-LSGGERQRVALARALVIQPR 146
Query: 474 ILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 509
+L+LDEP + +D+++ L E + + + ++ V+HD
Sbjct: 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 25/154 (16%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 401
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 402 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 452
G ++ + D+ ++K L EK LG G+
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 160
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 161 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGE 392
+V F Y K +L+ + F + +VALVGP G GK+T +NLL +G++ + +
Sbjct: 359 NVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 393 LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE---------KSRRQLG----- 438
+RK R + S + DT NL Y K +L
Sbjct: 419 IRKIKRSSL-----RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF 473
Query: 439 MFGLPSYAHTIPI---RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
+ LP T+ DLS GQ+ +A+ L NP ILILDE T+N+D ++ ++ A
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533
Query: 496 IKNYQGG--VILVSHDERLIRETDC 518
+ G I+++H I+ D
Sbjct: 534 MWKLMEGKTSIIIAHRLNTIKNADL 558
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 418
LVGPNG GKST L + G +T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 419 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLN 470
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 471 -----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 509
NP +L+LD+P N+LD+ ++D + A+ +++ SHD
Sbjct: 144 ITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIA 106
++ +G LVGPNG GK+TLL +A
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMA 47
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR 398
G + K+N + + L+GP+G GK+T L ++ G P +G + P+
Sbjct: 23 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 82
Query: 399 LR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIP 450
R I Q ++P T E + +K+ P + + R + + + P
Sbjct: 83 DRNISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP 140
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILV 506
+ LSGGQ+ RVA+A + PD+L++DEP +NLD + A+ IK Q + I V
Sbjct: 141 AQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 199
Query: 507 SHDE 510
+HD+
Sbjct: 200 THDQ 203
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V++K+EN + + NL I G L+GP+G GKTT LR IA
Sbjct: 11 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 59
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR 398
G + K+N + + L+GP+G GK+T L ++ G P +G + P+
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 81
Query: 399 LR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIP 450
R I Q ++P T E + +K+ P + + R + + + P
Sbjct: 82 DRNISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP 139
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILV 506
+ LSGGQ+ RVA+A + PD+L++DEP +NLD + A+ IK Q + I V
Sbjct: 140 AQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 198
Query: 507 SHDE 510
+HD+
Sbjct: 199 THDQ 202
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V++K+EN + + NL I G L+GP+G GKTT LR IA
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 32/157 (20%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+ Q+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF--CSQN 107
Query: 408 SGEHLFP------------DDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTI 449
S + P D+ ++K L EK LG G+
Sbjct: 108 S--WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT------ 159
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 338 LHDVTFGYP--GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
DV F YP L+ +NF + + ALVG G GKST LL +G+++
Sbjct: 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKI 78
Query: 396 SPRLRIGKFDQHSGEHLF---PDDTPCEYLMKLFNLPYEK------------SRRQLGMF 440
+ + K++++S + P DT +N+ Y K QL F
Sbjct: 79 GGK-NVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDF 137
Query: 441 --GLPSYAHTI---PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
LP TI LSGG++ R+A+A L +P I+I DE T++LD ++ +A
Sbjct: 138 IEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197
Query: 496 IKNYQGG--VILVSH 508
+++ + +I+++H
Sbjct: 198 VEDLRKNRTLIIIAH 212
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGE--------LRKSP 397
G+ +L+ VN + AL+GPNG GKST +L G E T +GE L SP
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE-KSRRQLGMFGL------------ 442
R R G F +P + P + L + K R++G+
Sbjct: 75 DERARKGLFLAFQ----YPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 443 --PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
SY SGG+K R + +L + P +LDE + LDI+++ +A + +
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 501 G---GVILVSHDERLI 513
G G ++++H +R++
Sbjct: 191 GPNFGALVITHYQRIL 206
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ + S G + NL + G + L+GPNG GK+TL + +A
Sbjct: 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILA 50
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 32/157 (20%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+ Q+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF--CSQN 107
Query: 408 SGEHLFP------------DDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTI 449
S + P D+ ++K L EK LG G+
Sbjct: 108 S--WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT------ 159
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 348 GKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR 398
GKV ++ V+F + VAL+GP+G GK+T L +L G P GE+ P+
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73
Query: 399 LR-IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR--------------RQLGMFGLP 443
R +G Q+ L+P T E + P R R+L + L
Sbjct: 74 YREVGMVFQNYA--LYPHMTVFENIA----FPLRARRISKDEVEKRVVEIARKLLIDNLL 127
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-- 501
T LSGGQ+ RVALA + P +L+ DEP +NLD + IK+ Q
Sbjct: 128 DRKPT----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183
Query: 502 GV--ILVSHDE 510
G+ + V+HD+
Sbjct: 184 GITSVYVTHDQ 194
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--EL 393
L + ++ F Y L +++NF L+ +A++G NG GKST L+LL G P +G E+
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 394 RKS----PRLRIGKFDQHSGE-HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT 448
+S P+ F + L T K + Y+ + + L L A
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR 124
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQGGVI 504
LSGGQ+ + +A + +++LDEPT+ LD+ + D L + ++ V+
Sbjct: 125 -EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 505 LVSHDERLIRETDCELWALEKKNIR 529
+H + + L K+N +
Sbjct: 184 FTTHQPNQVVAIANKTLLLNKQNFK 208
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 338 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--- 393
L +VT + G+V++ K +N + V VGP+G GKST L ++ G T G+L
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQLGMFG-LPSY 445
+P G L+P + E + +KL E +++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 123
Query: 446 AHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
AH + + LSGGQ+ RVA+ + P + +LDEP +NLD
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N + + V + + NL I G VGP+G GK+TLLR IA L +S DL
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSGDLF 61
Query: 120 YCEQ 123
E+
Sbjct: 62 IGEK 65
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 338 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--- 393
L +VT + G+V++ K +N + V VGP+G GKST L ++ G T G+L
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQLGMFG-LPSY 445
+P G L+P + E + +KL E +++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 123
Query: 446 AHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
AH + + LSGGQ+ RVA+ + P + +LDEP +NLD
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N + + V + + NL I G VGP+G GK+TLLR IA L +S DL
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSGDLF 61
Query: 120 YCEQ 123
E+
Sbjct: 62 IGEK 65
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 356 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
N L +ES ++GP G GK+ FL L+ G P+ G + D L
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL---------LDGKDVTDLS 68
Query: 414 PDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIR-------------------D 453
P+ ++ + ++L P+ ++ L FG+ P R
Sbjct: 69 PEKHDIAFVYQNYSLFPHMNVKKNLE-FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 509
LSGG++ RVALA + NP IL+LDEP + LD + + E + K + V+ ++HD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 510 E 510
+
Sbjct: 188 Q 188
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I++E+ S K L N +L++ SG + ++GP G GKT L IA +P S +L
Sbjct: 2 IEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIA--GFHVPDSGRIL 58
Query: 120 YCEQEV 125
++V
Sbjct: 59 LDGKDV 64
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 338 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--- 393
L +VT + G+V++ K +N + V VGP+G GKST L ++ G T G+L
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQLGMFG-LPSY 445
+P G L+P + E + +KL E +++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 123
Query: 446 AHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
AH + + LSGGQ+ RVA+ + P + +LD+P +NLD
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N + + V + + NL I G VGP+G GK+TLLR IA L +S DL
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSGDLF 61
Query: 120 YCEQ 123
E+
Sbjct: 62 IGEK 65
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 33/169 (19%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 418
LVGPNG GKST L + G +T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 419 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLN 470
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 471 -----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 509
NP +L+LD+P +LD+ ++D + A+ +++ SHD
Sbjct: 144 ITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIA 106
++ +G LVGPNG GK+TLL +A
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMA 47
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 33/169 (19%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 418
LVGPNG GKST L G T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 419 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLN 470
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 471 -----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 509
NP +L+LDEP N+LD+ ++D + A+ ++ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHD 192
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------------KSPRLR--IGKFDQHS 408
+ L+GP+G GK+T L + G P +G++ P+ R F ++
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYA 94
Query: 409 GEHLFPDDTPCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461
L+P T + + +KL +P + + R GL + P R+LSGGQ+ R
Sbjct: 95 ---LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKP-RELSGGQRQR 150
Query: 462 VALAELTLNNPDILILDEPTNNLDIE-SIDALAEAIK-NYQGGV--ILVSHDE 510
VAL + P + + DEP +NLD + + AE K Q GV I V+HD+
Sbjct: 151 VALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQ 203
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++K+ N V + +L+I G L+GP+G GKTT LR IA
Sbjct: 6 EVKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIA 53
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 33/169 (19%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 418
LVGPNG GKST L G T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 419 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLN 470
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 471 -----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 509
NP +L+LDEP N+LD+ ++D + A+ ++ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHD 192
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 363 SRVALVGPNGIGKSTFLNLLKGELTPN----------KG---------ELRKSPRLRIGK 403
S A+VG + GKST + + L PN KG ELRK I
Sbjct: 35 SVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIAL 94
Query: 404 FDQHSGEHLFPDDTPCEYLMKLFNLP---------YEKSRRQLGMFGLPSYA--HTIPIR 452
Q + + L P E+ EK+ +L M L A ++ P++
Sbjct: 95 VPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQ 154
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSH 508
LSGG K RV +A L +P +LILDEPT+ LD+ + I L E K + +I V+H
Sbjct: 155 -LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTH 213
Query: 509 DERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542
D + E ++ + N+ ++N F ++ L
Sbjct: 214 DIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPL 247
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 338 LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--L 393
DV+F YP +L+ + F L ALVGPNG GKST LL+ P G+ L
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPYEKSR----RQLGMFGLP 443
P + ++D H +L LF N+ Y +R ++ +
Sbjct: 79 DGEPLV---QYDHH---YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 444 SYAHTI--------------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
S AH LSGGQ+ VALA + P +LILD+ T+ LD
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR--IGKFD----QHSGEHLFPDDT- 417
+ LVG NGIGKST L +L G+ PN G P + I F Q+ + DD
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 418 -----------------PCEYLMKLFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSG 456
P + + +L L EKS +R + + L + I LSG
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-DIEKLSG 224
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHD 509
G+ R A+ + D+ + DEP++ LD++ A+ I++ VI V HD
Sbjct: 225 GELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 32/162 (19%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ ++G NG GK+T + LL G L P++G+ P+L + Q FP + +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQ--DIPKLNVSMKPQKIAPK-FPGT-----VRQ 432
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTI--PIR----------DLSGGQKARVALAELTLNNP 472
LF ++K R G F P + + P+R LSGG+ RVA+ L L P
Sbjct: 433 LF---FKKIR---GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIV-LALGIP 485
Query: 473 -DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
DI ++DEP+ LD E ++ I+ + + +V HD
Sbjct: 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 401
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 402 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLPY------EKSRRQLGMFGLPSYAHTIPIR 452
G ++ + D+ + ++K L E+ LG G+
Sbjct: 110 IMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 161 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
D+N+V L G + N NL I G + G G GKT+LL I
Sbjct: 37 DENNVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 202 TVKNAD-RIIVMEKGKI 217
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 339 HDVTFG------YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
HD+TF P V+L+ +N + + +VG +G GKST L++ P G+
Sbjct: 2 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 393 L 393
+
Sbjct: 62 V 62
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG +G GK+TL + I
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 51
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 202 TVKNAD-RIIVMEKGKI 217
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 339 HDVTFG------YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
HD+TF P V+L+ +N + + +VG G GKST L++ P G+
Sbjct: 2 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 393 L 393
+
Sbjct: 62 V 62
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG G GK+TL + I
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI 51
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---- 403
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 404 -----------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 452
F E+ + L + E+ LG G+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 161 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
D+N+V L G + N NL I G + G G GKT+LL I
Sbjct: 37 DENNVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 401
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 402 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 452
G ++ + D+ ++K L EK LG G+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 160
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LS GQ+A+++LA + D+ +LD P LD+
Sbjct: 161 -LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 401
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 402 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLPY------EKSRRQLGMFGLPSYAHTIPIR 452
G ++ + D+ + ++K L E+ LG G+
Sbjct: 110 IMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 161 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
D+N+V L G + N NL I G + G G GKT+LL I
Sbjct: 37 DENNVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---- 403
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 404 -----------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 452
F E+ + L + E+ LG G+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 161 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA-- 111
D+N+V L G + N NL I G + G G GKT+LL I A
Sbjct: 37 DENNVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
Query: 112 --IPSSIDLLYCEQE---VEASDDSAVNIVLSADKNRVKLLKECSKLERD 156
I S + +C Q + + + +S D+ R K + + +L++D
Sbjct: 93 GIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD 142
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 200 TVKNAD-RIIVMEKGKI 215
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 340 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
++ F Y P V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG +G GK+TL + I
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 206 TVKNAD-RIIVMEKGKI 221
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 340 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
++ F Y P V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG +G GK+TL + I
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 72/176 (40%), Gaps = 34/176 (19%)
Query: 338 LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--L 393
DV+F YP +L+ + F L ALVGPNG GKST LL+ P G+ L
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPYEKSR----RQLGMFGLP 443
P + ++D H +L LF N+ Y +R ++ +
Sbjct: 79 DGEPLV---QYDHH---YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 444 SYAHTI--------------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
S AH LSGGQ+ VALA + P +LILD T+ LD
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC----- 104
Query: 408 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--LGMFGLPSYAHTIPIRD----------LS 455
F P + + Y++ R + + L +D LS
Sbjct: 105 ---SQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 161
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDI 486
GQ+A+++LA + D+ +LD P LD+
Sbjct: 162 EGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 32/157 (20%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------- 400
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 401 ----------IG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 449
IG +D++ + + C+ + E+ LG G+
Sbjct: 110 IMPGTIKENIIGVSYDEYRYKSVVK---ACQLQQDITKFA-EQDNTVLGEGGVT------ 159
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 54 DDNSVDIKVENFS-LSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
D+N+V +FS L G + N NL I G + G G GKT+LL I
Sbjct: 37 DENNV-----SFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A +NNP ILI D+ T+ LD ES + + G VI+++H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 206 TVKNAD-RIIVMEKGKI 221
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 340 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
++ F Y P V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG +G GK+TL + I
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 30/191 (15%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------RK 395
G +L+ ++ + V+++G +G GKST L +L P +G++ ++
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 396 SPRLRIGK----FDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPS 444
LR K F H +L P+ T E + M P ++++ + L GL
Sbjct: 76 LSLLRNRKLGFVFQFH---YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD 132
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNYQGG- 502
P +LSGG++ RVA+A N P +L DEPT NLD + + + +K +GG
Sbjct: 133 KLSRKPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191
Query: 503 -VILVSHDERL 512
+++V+H+ L
Sbjct: 192 SIVMVTHEREL 202
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
++ EN +G E+ +L + G ++G +G GK+TLL
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLL 47
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL------TPNKGELRKSPRLRIGKFD 405
L + F + + VA+VG G GKS+ L+ L E+ KG + P+ + D
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQND 80
Query: 406 QHSGEHLFPDD----------TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLS 455
LF C L L LP R ++G G+ +LS
Sbjct: 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILP-SGDRTEIGEKGV----------NLS 129
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV-----ILVSHDE 510
GGQK RV+LA +N DI + D+P + +D + E + +G + ILV+H
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189
Query: 511 RLIRETD 517
+ + D
Sbjct: 190 SYLPQVD 196
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 366 ALVGPNGIGKSTFLNLLKG----ELTPNKGELRKSPRLRIGKFDQHSGEHLF-----PDD 416
A++GPNG GKST L G E+T E + L + D+ +GE +F P +
Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR-AGEGIFMAFQYPVE 89
Query: 417 TPC---EYLMKLFNLPYEKSRRQ---------------LGMFGLPSYAHTIPIR-DLSGG 457
P ++ ++ R Q + + +P T + SGG
Sbjct: 90 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 149
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDERLI 513
+K R + ++ + P++ ILDE + LDI+++ +A+ + + + G I+V+H +R++
Sbjct: 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 208
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 AGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248
+GL + + + V+ +R K++ ++V+H Q L+ I D +H+ + G+FTL
Sbjct: 174 SGLDIDALKVVADGVNS-LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232
Query: 249 FKKMYVQKRKELTKE 263
K++ Q LT++
Sbjct: 233 VKQLEEQGYGWLTEQ 247
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108
+ +++ +S + + +L + G + ++GPNG GK+TL +A R
Sbjct: 2 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 336 LGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+ ++ F Y P V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG +G GK+TL + I
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 336 LGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+ ++ F Y P V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ N NL I G G+VG +G GK+TL + I
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 366 ALVGPNGIGKSTFLNLLKG----ELTPNKGELRKSPRLRIGKFDQHSGEHLF-----PDD 416
A++GPNG GKST L G E+T E + L + D+ +GE +F P +
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR-AGEGIFMAFQYPVE 108
Query: 417 TPC---EYLMKLFNLPYEKSRRQ---------------LGMFGLPSYAHTIPIR-DLSGG 457
P ++ ++ R Q + + +P T + SGG
Sbjct: 109 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDERLI 513
+K R + ++ + P++ ILDE + LDI+++ +A+ + + + G I+V+H +R++
Sbjct: 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 227
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 263
+R K++ ++V+H Q L+ I D +H+ + G+FTL K++ Q LT++
Sbjct: 210 LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 266
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108
+ +++ +S + + +L + G + ++GPNG GK+TL +A R
Sbjct: 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKF 404
GK +L+K+++ + + L G NG GK+T LN+L G + K P ++G
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPG-KVGYS 91
Query: 405 DQHSGEHL-FPDDTPCEYLM---KLFNLPYEKSRRQLGMFG-----LPSYAHTI------ 449
+ +H+ F + E ++ ++ + + +G++ + + AH +
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGX 151
Query: 450 ------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
I LS G+K RV +A P +LILDEP LD
Sbjct: 152 SAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I+++ +G + + QIA G ++ L G NG GKTTLL + A +++L
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 34/176 (19%)
Query: 338 LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--L 393
DV+F YP +L+ + F L ALVGPNG GKST LL+ P G+ L
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPYEKSR----RQLGMFGLP 443
P + ++D H +L LF N+ Y +R ++ +
Sbjct: 79 DGEPLV---QYDHH---YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 444 SYAHTI--------------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
S AH L+ GQ+ VALA + P +LILD T+ LD
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------ELRKSP-- 397
G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G + + P
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS-------RRQLGMFGLPSYAHTI 449
R I + +G + + EYL + S R + GL
Sbjct: 86 VRKLISYLPEEAGA--YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD- 142
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVS 507
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K + +G ILVS
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 508 HDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
L E C+ AL G ++ +E+
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS-IDLLYCEQEVEASDDS 131
E+ + +I G +GL+GPNG GKTT LR I+T L PSS I ++ + VE +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVTVFGKNVVEEPHEV 86
Query: 132 AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL 191
+ + L E + R+ G LR + S E + RA I AGL
Sbjct: 87 ---------RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI-AGL 136
Query: 192 G 192
G
Sbjct: 137 G 137
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI- 489
E++ + L G+ A LSGGQ+ RV++A PD+L+ DEPT+ LD E +
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 490 ------DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 528
LAE K +++V+H+ R + L + I
Sbjct: 191 EVLRIMQQLAEEGKT----MVVVTHEMGFARHVSSHVIFLHQGKI 231
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 92/241 (38%), Gaps = 57/241 (23%)
Query: 336 LGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGELTPNK 390
+ + D+T Y GG +LE ++F + RV L+G G GKST FL LL E
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE----- 74
Query: 391 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF---------- 440
GE+ + D S D E K F + +K G F
Sbjct: 75 GEI---------QIDGVSW-----DSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 441 ------------GLPSYAHTIPIR----------DLSGGQKARVALAELTLNNPDILILD 478
GL S P + LS G K + LA L+ IL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 479 EPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDD 537
EP+ +LD + + +K ++ + R+ +C + +E+ +R+++ +
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 538 Y 538
Y
Sbjct: 241 Y 241
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
G + N + I+ G+R GL+G G GK+TLL
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 58 VDIKVENFSLSAKGVELF--HNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ +K +LS KG E F N NL++ +G + ++GPNG GKTTLLR I+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAIS 51
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------ELRKSPRLRIGKF 404
LE +N ++ E +V ++GPNG GK+T L + G L P G E+RK I +
Sbjct: 21 LENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK-----IRNY 73
Query: 405 DQHSGE---------------HLFPD------DTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
++S +L+ + D E ++K L E RR+L
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE-MLKALKLGEEILRRKL------ 126
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 503
LS GQ V + + P+I+ LDEP N+D ++ IK Y
Sbjct: 127 --------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
Query: 504 ILVSHD 509
ILV+H+
Sbjct: 179 ILVTHE 184
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 45/184 (24%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELR----KSPRL 399
+L VNF + S VA++G G GKST +NL+ +G + ++ ++R K R
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 400 RIGKFDQHS-------------GEHLFPDDTPCEYLMK------LFNLP--YEKSRRQLG 438
I Q + G DD E + +LP Y+ + G
Sbjct: 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG 477
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
R+ SGGQK R+++A + P +LILD+ T+++D + + + +K
Sbjct: 478 -------------RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524
Query: 499 YQGG 502
Y G
Sbjct: 525 YTKG 528
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 31/159 (19%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG---------------ELRKS 396
L+ V+ ++ ++GPNG GKST +N++ G L ++G EL
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 397 PRLRIGKFDQHSGE----------HLFPDDTPCEYLMKLFNLP-----YEKSRRQLGMFG 441
+R + Q E + P ++P L +P EK+ + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
L S+ + +LSGGQ V + + NP ++++DEP
Sbjct: 143 L-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL----------- 399
+L ++ LD + ++G +G GK+T L L G P+ GE+ S +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 400 --RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR----RQ-----LGMFGLPSYAHT 448
R+G Q LFP T Y + L K R RQ L + G+ A
Sbjct: 79 ERRLGYLVQEG--VLFPHLT--VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR 134
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE----AIKNYQGGVI 504
P +LSGGQ+ R ALA +P++++LDEP + LD + + E A++ +
Sbjct: 135 YP-HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 505 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK----LLTSLGEAMVYNPSVAA 558
VSHD + + +++ I + + YR+ +GE +V+ ++ A
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNA 251
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKG---------------ELRKSPRLRIGKFDQHSGE- 410
++GPNG GKST +N++ G L ++G EL +R + Q E
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 411 ---------HLFPDDTPCEYLMKLFNLP-----YEKSRRQLGMFGLPSYAHTIPIRDLSG 456
+ P ++P L +P EK+ + L L S+ + +LSG
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-SHLYDRKAGELSG 156
Query: 457 GQKARVALAELTLNNPDILILDEP 480
GQ V + + NP ++++DEP
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 80 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 139
Query: 503 --VILVSHDERL 512
VILVSHDE L
Sbjct: 140 PQVILVSHDEEL 151
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 503 --VILVSHDERL 512
VILVSHDE L
Sbjct: 114 PQVILVSHDEEL 125
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 304
Query: 503 --VILVSHDERL 512
VILVSHDE L
Sbjct: 305 PQVILVSHDEEL 316
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 85 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 144
Query: 503 --VILVSHDERL 512
VILVSHDE L
Sbjct: 145 PQVILVSHDEEL 156
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 265 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 324
Query: 503 --VILVSHDERL 512
VILVSHDE L
Sbjct: 325 PQVILVSHDEEL 336
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 31/159 (19%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG---------------ELRKS 396
L+ V+ ++ ++GPNG GKST +N++ G L ++G EL
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 397 PRLRIGKFDQHSGE----------HLFPDDTPCEYLMKLFNLP-----YEKSRRQLGMFG 441
+R + Q E + P ++P L +P EK+ + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
L S+ + +LSGGQ V + + NP ++++D+P
Sbjct: 143 L-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 454 LSGGQKARVALAELTLNNPD--ILILDEPTNNL---DIESIDALAEAIKNYQGGVILVSH 508
LSGG+ R+ LA + I +LDEPT L D E + + +++ VI+V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 509 DERLIRETD 517
DE +IR D
Sbjct: 525 DEEVIRNAD 533
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 450 PIRDLSGGQKARVALA-ELTLNNP--DILILDEPTNNLDIESIDALAEAIK---NYQGGV 503
P LSGG+ R+ LA EL + + ILDEPT L E + L E + + V
Sbjct: 802 PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861
Query: 504 ILVSHDERLIRETD 517
I++ H+ +I+ D
Sbjct: 862 IVIEHNLDVIKNAD 875
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVA------LAELTLNNPDILILDEPTNNLDIESIDA 491
G F + + P R LSGG++A ++ LAE+ D +DE ++LD E+ +
Sbjct: 264 GGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEK 323
Query: 492 LAEAIKNYQ---GGVILVSHDERLIRETDCEL 520
+A +K + ++ ++HD D +L
Sbjct: 324 IASVLKELERLNKVIVFITHDREFSEAFDRKL 355
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVA------LAELTLNNPDILILDEPTNNLDIESIDA 491
G F + + P R LSGG++A ++ LAE+ D +DE ++LD E+ +
Sbjct: 264 GGFIIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEK 323
Query: 492 LAEAIKNYQ---GGVILVSHDERLIRETDCEL 520
+A +K + ++ ++HD D +L
Sbjct: 324 IASVLKELERLNKVIVFITHDREFSEAFDRKL 355
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 44/179 (24%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRL--RIGKFDQHSGEHLFP 414
V L+G NG GK+T L+ + G + KG++ K + R G G +FP
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFP 94
Query: 415 DDTPCEYLMK-----------------LFNL-PYEKSR-RQLGMFGLPSYAHTIPIRDLS 455
+ T E L +F+L P K R +QLG LS
Sbjct: 95 ELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG-------------GTLS 141
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSHDERL 512
GG++ +A+ + P +L DEP+ L + + E I+ N +G IL+ L
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + ++V++ + + +L++ G+ L+G NG GKTT L IA
Sbjct: 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ L GG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 50 PLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 109
Query: 503 --VILVSHDERL 512
VILVSHDE L
Sbjct: 110 PQVILVSHDEEL 121
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
KVLL+K++F D +RV +VG GKST +N LKG+ + G
Sbjct: 88 KVLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKRASSVG 128
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 450 PIRDLSGGQKARVALA-ELTLNNP--DILILDEPTNNLDIESIDALAEAIK---NYQGGV 503
P LSGG+ RV LA EL + + ILDEPT L + I L I + V
Sbjct: 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTV 919
Query: 504 ILVSHDERLIRETDCELWALE 524
I++ H+ +I+ +D W ++
Sbjct: 920 IVIEHNLDVIKTSD---WIID 937
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 450 PIRDLSGGQKARVALA-EL--TLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGG 502
P LSGG+ RV LA EL N + ILDEPT L ++ I D L + N
Sbjct: 540 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-T 598
Query: 503 VILVSHDERLIRETD 517
V+++ H+ +I+ D
Sbjct: 599 VLVIEHNLDVIKTAD 613
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 450 PIRDLSGGQKARVALA-EL--TLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGG 502
P LSGG+ RV LA EL N + ILDEPT L ++ I D L + N
Sbjct: 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-T 900
Query: 503 VILVSHDERLIRETD 517
V+++ H+ +I+ D
Sbjct: 901 VLVIEHNLDVIKTAD 915
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 450 PIRDLSGGQKARVALA-EL--TLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGG 502
P LSGG+ RV LA EL N + ILDEPT L ++ I D L + N
Sbjct: 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-T 900
Query: 503 VILVSHDERLIRETD 517
V+++ H+ +I+ D
Sbjct: 901 VLVIEHNLDVIKTAD 915
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 448 TIPIRDLSGGQKARVALA-------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
+ I +LSGG++ VAL+ L N + +ILDEPT LD LAE + +
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK 334
Query: 501 G--GVILVSHDERL 512
+I+++H L
Sbjct: 335 SIPQMIIITHHREL 348
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 454 LSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSH 508
LS G+ R+ LA +N + +LDEP+ L +AL A++N + G + +V H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 509 DERLIRETD 517
D +IR D
Sbjct: 440 DLDVIRRAD 448
>pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRV---ALVGPNGIGKSTFLNLLKGELTP----- 388
G++D T G GG+V++ G+ M + V AL +GK L +L+ +
Sbjct: 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDL 290
Query: 389 ----NKGELRKSPRLRI-----GKFDQHSGEHLFPDDT 417
N+ LR+S L+ GKFDQ E LF +DT
Sbjct: 291 IGLHNRVRLRQSDSLKREIIENGKFDQWFDE-LFGNDT 327
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 349 KVLL-----EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 403
KVLL E+ N G + RV L GP G GKSTF+ G++ +G K L +
Sbjct: 56 KVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYF-GKMLTERGH--KLSVLAVDP 112
Query: 404 FDQHSGEHLFPDDTPCEYLMKLFN 427
SG L D T L + N
Sbjct: 113 SSCTSGGSLLGDKTRMTELSRDMN 136
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVA------LAELTLNNPDILILDEPTNNLDIESIDA 491
G F + + P R LSGG++A ++ LAE+ D +DE ++L E+ +
Sbjct: 281 GGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEK 340
Query: 492 LAEAIK 497
+A +K
Sbjct: 341 IASVLK 346
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 73 ELFHNANLQIASGRRYGLV-GPNGHGKTTLLRHIATRALA------IPSS------IDLL 119
E F L ++ RR ++ GPN GK+T +R A AL +P+ ID +
Sbjct: 594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI 653
Query: 120 YCEQEVEASDD-----SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS 174
+ V A+DD S + ++ N + E S + DE G R T YD L S
Sbjct: 654 FT--RVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG----RGTSTYDGL-S 706
Query: 175 IEADAAEPRARRILAGLGFTTIYIPSSRVHEIM 207
+ AE A +I A F T Y +++ E M
Sbjct: 707 LAWACAENLANKIKALTLFATHYFELTQLPEKM 739
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 73 ELFHNANLQIASGRRYGLV-GPNGHGKTTLLRHIATRALA------IPSS------IDLL 119
E F L ++ RR ++ GPN GK+T +R A AL +P+ ID +
Sbjct: 594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI 653
Query: 120 YCEQEVEASDD-----SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS 174
+ V A+DD S + ++ N + E S + DE G R T YD L S
Sbjct: 654 FT--RVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG----RGTSTYDGL-S 706
Query: 175 IEADAAEPRARRILAGLGFTTIYIPSSRVHEIM 207
+ AE A +I A F T Y +++ E M
Sbjct: 707 LAWACAENLANKIKALTLFATHYFELTQLPEKM 739
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 73 ELFHNANLQIASGRRYGLV-GPNGHGKTTLLRHIATRALA------IPSS------IDLL 119
E F L ++ RR ++ GPN GK+T +R A AL +P+ ID +
Sbjct: 594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI 653
Query: 120 YCEQEVEASDD-----SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS 174
+ V A+DD S + ++ N + E S + DE G R T YD L S
Sbjct: 654 FT--RVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG----RGTSTYDGL-S 706
Query: 175 IEADAAEPRARRILAGLGFTTIYIPSSRVHEIM 207
+ AE A +I A F T Y +++ E M
Sbjct: 707 LAWACAENLANKIKALTLFATHYFELTQLPEKM 739
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 73 ELFHNANLQIASGRRYGLV-GPNGHGKTTLLRHIATRALA------IPSS------IDLL 119
E F L ++ RR ++ GPN GK+T +R A AL +P+ ID +
Sbjct: 594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI 653
Query: 120 YCEQEVEASDD-----SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS 174
+ V A+DD S + ++ N + E S + DE G R T YD L S
Sbjct: 654 FT--RVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG----RGTSTYDGL-S 706
Query: 175 IEADAAEPRARRILAGLGFTTIYIPSSRVHEIM 207
+ AE A +I A F T Y +++ E M
Sbjct: 707 LAWACAENLANKIKALTLFATHYFELTQLPEKM 739
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 67 LSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI-------ATRALAIPSSIDLL 119
L KG + F +L S R +VGPNG GK+ ++ I + + L D++
Sbjct: 6 LYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMI 65
Query: 120 YCEQE-VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 175
+ E + + + V +V + + + +E + +G+N L LK I
Sbjct: 66 FAGSENLPPAGSAYVELVFEENGEEITVARELKR-----TGENTYYLNGSPVRLKDI 117
>pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
Length = 296
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRV---ALVGPNGIGKSTFLNLLKGELTP----- 388
G++D T G GG+V++ G+ + V AL +GK L +L+ +
Sbjct: 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDL 83
Query: 389 ----NKGELRKSPRLRI-----GKFDQHSGEHLFPDDT 417
N+ LR+S L+ GKFDQ E LF +DT
Sbjct: 84 IGLHNRVRLRQSDSLKREIIENGKFDQWFDE-LFGNDT 120
>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
Length = 338
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 228 CTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQ 287
C D HL KKLF+Y ++ +++ +Q RK ++ EL I ++ SK ER
Sbjct: 121 CFD--HLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKER- 177
Query: 288 HSHKALKEQARK 299
H+ + E +R+
Sbjct: 178 --HEQIAEISRE 187
>pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
Length = 289
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRV---ALVGPNGIGKSTFLNLLKGELTP----- 388
G++D T G GG+V++ G+ + V AL +GK L +L+ +
Sbjct: 34 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDL 93
Query: 389 ----NKGELRKSPRLRI-----GKFDQHSGEHLFPDDT 417
N+ LR+S L+ GKFDQ E LF +DT
Sbjct: 94 IGLHNRVRLRQSDSLKREIIENGKFDQWFDE-LFGNDT 130
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 141
IA G+ + G G GKTT ++ I I + E+ V + + +
Sbjct: 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNI 227
Query: 142 NRVKLLKECSKLERDESGDNQLRLTEVYD 170
LK C ++ D +LR +E YD
Sbjct: 228 TSADCLKSCLRMRPDRIILGELRSSEAYD 256
>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
pdb|3CQ4|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
Length = 376
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 462 VALAELTLNNPDILILDEPTNNL-DIESIDALAEAIKNYQGGVILV 506
VAL E+ PDI+ + P N D+ S+D + E I N G+++V
Sbjct: 152 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV-ERIINVAPGIVIV 196
>pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|E Chain E, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
Length = 369
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 462 VALAELTLNNPDILILDEPTNNL-DIESIDALAEAIKNYQGGVILV 506
VAL E+ PDI+ + P N D+ S+D + E I N G+++V
Sbjct: 155 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV-ERIINVAPGIVIV 199
>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
Length = 369
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 462 VALAELTLNNPDILILDEPTNNL-DIESIDALAEAIKNYQGGVILV 506
VAL E+ PDI+ + P N D+ S+D + E I N G+++V
Sbjct: 155 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV-ERIINVAPGIVIV 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,030,861
Number of Sequences: 62578
Number of extensions: 619926
Number of successful extensions: 2567
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2201
Number of HSP's gapped (non-prelim): 359
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)