Query psy16366
Match_columns 568
No_of_seqs 490 out of 2583
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:27:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0066|consensus 100.0 3E-120 7E-125 916.0 39.8 542 6-551 214-802 (807)
2 COG0488 Uup ATPase components 100.0 1.6E-88 3.5E-93 735.6 53.0 478 58-542 2-527 (530)
3 KOG0927|consensus 100.0 1.3E-85 2.8E-90 684.0 38.2 492 51-548 67-604 (614)
4 KOG0062|consensus 100.0 1.2E-82 2.7E-87 658.4 32.9 472 57-548 78-577 (582)
5 PLN03073 ABC transporter F fam 100.0 3.1E-79 6.7E-84 690.3 61.0 480 55-542 173-716 (718)
6 PRK10636 putative ABC transpor 100.0 2.2E-76 4.9E-81 664.3 58.3 474 59-541 1-518 (638)
7 PRK11147 ABC transporter ATPas 100.0 1.5E-73 3.2E-78 642.5 57.8 470 59-540 3-528 (635)
8 PRK15064 ABC transporter ATP-b 100.0 8.6E-70 1.9E-74 601.4 58.8 474 59-540 1-525 (530)
9 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.1E-69 6.7E-74 599.2 60.3 478 59-548 4-539 (552)
10 PRK11819 putative ABC transpor 100.0 2.8E-69 6.1E-74 599.7 59.4 473 58-542 5-535 (556)
11 TIGR03269 met_CoM_red_A2 methy 100.0 4.6E-63 9.9E-68 546.7 46.4 414 60-540 1-517 (520)
12 COG1123 ATPase components of v 100.0 7.9E-64 1.7E-68 533.3 38.7 439 59-546 5-533 (539)
13 PRK15134 microcin C ABC transp 100.0 5.5E-63 1.2E-67 546.9 39.3 422 59-538 5-513 (529)
14 PRK13549 xylose transporter AT 100.0 1.3E-62 2.9E-67 541.1 37.1 420 58-538 4-492 (506)
15 PRK10261 glutathione transport 100.0 2.4E-61 5.3E-66 542.0 44.8 446 59-537 12-550 (623)
16 PRK09700 D-allose transporter 100.0 5.9E-62 1.3E-66 536.6 38.7 412 58-531 4-490 (510)
17 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-61 2.6E-66 533.1 36.8 411 60-530 2-483 (500)
18 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-61 6.2E-66 530.6 38.8 421 59-539 11-491 (510)
19 PRK10938 putative molybdenum t 100.0 3.1E-61 6.8E-66 528.5 38.9 418 59-531 3-484 (490)
20 PRK11288 araG L-arabinose tran 100.0 2.6E-60 5.5E-65 522.4 40.2 415 59-539 4-484 (501)
21 PRK10762 D-ribose transporter 100.0 3.3E-60 7.2E-65 521.5 39.3 411 59-538 4-482 (501)
22 PRK10982 galactose/methyl gala 100.0 2.6E-59 5.6E-64 513.3 39.6 412 62-539 1-479 (491)
23 PRK13409 putative ATPase RIL; 100.0 1.2E-57 2.5E-62 506.3 39.3 403 64-529 78-532 (590)
24 COG4172 ABC-type uncharacteriz 100.0 2.1E-57 4.6E-62 458.1 34.8 415 56-531 3-508 (534)
25 COG1126 GlnQ ABC-type polar am 100.0 1E-50 2.2E-55 381.8 23.0 200 334-538 1-223 (240)
26 COG1129 MglA ABC-type sugar tr 100.0 5E-49 1.1E-53 417.4 31.8 410 56-530 5-481 (500)
27 PLN03232 ABC transporter C fam 100.0 1.5E-46 3.3E-51 455.8 46.6 200 335-539 1234-1457(1495)
28 PLN03130 ABC transporter C fam 100.0 4.4E-46 9.5E-51 452.2 48.5 200 335-539 1237-1460(1622)
29 TIGR00957 MRP_assoc_pro multi 100.0 2.5E-45 5.4E-50 445.8 47.6 201 335-540 1284-1508(1522)
30 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.3E-47 1.4E-51 371.2 23.4 202 334-539 3-226 (254)
31 COG1120 FepC ABC-type cobalami 100.0 4.1E-47 9E-52 374.3 21.8 209 335-547 2-236 (258)
32 KOG0055|consensus 100.0 1.3E-45 2.9E-50 419.1 35.5 200 336-540 988-1213(1228)
33 COG1124 DppF ABC-type dipeptid 100.0 1.7E-46 3.6E-51 360.2 23.0 215 334-548 2-247 (252)
34 PTZ00243 ABC transporter; Prov 100.0 6.6E-44 1.4E-48 432.6 49.2 200 335-539 1308-1532(1560)
35 COG1116 TauB ABC-type nitrate/ 100.0 4.4E-46 9.5E-51 360.5 23.7 189 334-526 2-207 (248)
36 COG1127 Ttg2A ABC-type transpo 100.0 4.6E-46 1E-50 355.5 23.5 204 333-540 6-235 (263)
37 PTZ00265 multidrug resistance 100.0 1.9E-43 4.2E-48 425.5 48.1 201 335-539 1165-1451(1466)
38 COG3638 ABC-type phosphate/pho 100.0 7.8E-46 1.7E-50 353.1 20.9 210 334-547 2-244 (258)
39 COG1125 OpuBA ABC-type proline 100.0 2E-45 4.4E-50 352.6 19.3 196 335-533 1-219 (309)
40 COG3845 ABC-type uncharacteriz 100.0 2E-43 4.3E-48 367.4 35.6 408 59-530 4-483 (501)
41 COG1135 AbcC ABC-type metal io 100.0 3E-45 6.4E-50 361.4 20.8 194 335-531 1-223 (339)
42 COG1122 CbiO ABC-type cobalt t 100.0 8E-45 1.7E-49 357.6 23.4 203 334-539 2-227 (235)
43 COG1136 SalX ABC-type antimicr 100.0 2.6E-44 5.7E-49 347.9 24.1 192 335-529 1-221 (226)
44 TIGR01271 CFTR_protein cystic 100.0 7.8E-42 1.7E-46 414.2 49.0 199 335-539 1217-1439(1490)
45 COG2884 FtsE Predicted ATPase 100.0 4.1E-44 9E-49 330.0 19.1 195 335-532 1-219 (223)
46 COG0488 Uup ATPase components 100.0 5.4E-44 1.2E-48 388.0 21.7 204 334-542 2-242 (530)
47 PRK13537 nodulation ABC transp 100.0 5.4E-43 1.2E-47 360.9 26.4 204 333-541 5-228 (306)
48 COG3842 PotA ABC-type spermidi 100.0 1.2E-43 2.6E-48 364.3 21.5 202 333-539 3-226 (352)
49 cd03261 ABC_Org_Solvent_Resist 100.0 5.3E-43 1.1E-47 348.2 25.2 198 336-538 1-224 (235)
50 COG1131 CcmA ABC-type multidru 100.0 5.1E-43 1.1E-47 358.2 25.5 203 334-541 3-227 (293)
51 COG3839 MalK ABC-type sugar tr 100.0 2.7E-43 5.8E-48 359.9 22.5 202 335-540 3-224 (338)
52 TIGR00960 3a0501s02 Type II (G 100.0 3.1E-43 6.8E-48 345.3 22.1 191 335-528 1-216 (216)
53 PRK13536 nodulation factor exp 100.0 1.8E-42 4E-47 361.0 26.9 205 331-540 37-261 (340)
54 TIGR02314 ABC_MetN D-methionin 100.0 1.6E-42 3.5E-47 361.1 25.9 200 335-538 1-228 (343)
55 TIGR01288 nodI ATP-binding ABC 100.0 1.8E-42 3.9E-47 357.0 26.0 202 334-540 3-224 (303)
56 COG1118 CysA ABC-type sulfate/ 100.0 3E-43 6.4E-48 346.4 19.0 199 335-538 2-225 (345)
57 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-42 2.3E-47 340.8 22.8 191 336-530 1-211 (213)
58 cd03226 ABC_cobalt_CbiO_domain 100.0 1.6E-42 3.6E-47 337.6 22.7 189 338-529 2-205 (205)
59 cd03265 ABC_DrrA DrrA is the A 100.0 1.7E-42 3.6E-47 341.2 22.7 197 336-537 1-218 (220)
60 PRK11247 ssuB aliphatic sulfon 100.0 3.6E-42 7.7E-47 346.2 25.6 194 333-530 10-214 (257)
61 PRK11650 ugpC glycerol-3-phosp 100.0 4.1E-42 8.9E-47 360.5 26.3 200 335-538 3-222 (356)
62 cd03296 ABC_CysA_sulfate_impor 100.0 5.6E-42 1.2E-46 341.8 25.5 199 335-538 2-224 (239)
63 PRK11432 fbpC ferric transport 100.0 6.5E-42 1.4E-46 358.1 26.0 200 334-538 5-224 (351)
64 PRK11831 putative ABC transpor 100.0 8E-42 1.7E-46 346.5 25.9 202 333-539 5-232 (269)
65 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-41 2.3E-46 350.9 27.0 201 335-540 2-221 (301)
66 cd03256 ABC_PhnC_transporter A 100.0 6E-42 1.3E-46 341.7 24.3 201 336-540 1-234 (241)
67 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.3E-42 1.4E-46 337.1 24.2 192 336-530 1-214 (220)
68 cd03219 ABC_Mj1267_LivG_branch 100.0 5.6E-42 1.2E-46 340.9 24.0 198 336-538 1-230 (236)
69 cd03268 ABC_BcrA_bacitracin_re 100.0 5.9E-42 1.3E-46 334.4 23.5 191 336-530 1-206 (208)
70 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.3E-42 9.3E-47 337.7 22.4 189 336-528 1-218 (218)
71 TIGR03265 PhnT2 putative 2-ami 100.0 9.3E-42 2E-46 357.5 26.0 201 334-539 3-223 (353)
72 TIGR02315 ABC_phnC phosphonate 100.0 5.8E-42 1.3E-46 342.3 23.4 201 335-539 1-234 (243)
73 PRK11153 metN DL-methionine tr 100.0 1.1E-41 2.4E-46 356.4 26.1 200 335-538 1-228 (343)
74 cd03269 ABC_putative_ATPase Th 100.0 8E-42 1.7E-46 333.9 23.2 191 336-530 1-208 (210)
75 TIGR02673 FtsE cell division A 100.0 4.8E-42 1E-46 336.4 21.7 190 335-527 1-214 (214)
76 PRK13647 cbiO cobalt transport 100.0 9.4E-42 2E-46 346.8 24.2 202 334-538 3-225 (274)
77 PRK09452 potA putrescine/sperm 100.0 1.5E-41 3.4E-46 357.7 26.6 202 332-538 11-232 (375)
78 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-41 2.4E-46 333.6 23.6 192 336-531 1-212 (213)
79 cd03266 ABC_NatA_sodium_export 100.0 8.2E-42 1.8E-46 335.7 22.7 192 335-530 1-216 (218)
80 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-41 3E-46 337.6 24.2 199 335-538 1-228 (233)
81 PRK13651 cobalt transporter AT 100.0 1.5E-41 3.2E-46 349.7 25.2 203 335-539 2-253 (305)
82 PRK11000 maltose/maltodextrin 100.0 1.9E-41 4.2E-46 357.6 26.6 199 335-538 3-221 (369)
83 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-41 3.2E-46 360.0 25.6 201 334-539 2-227 (402)
84 PRK11629 lolD lipoprotein tran 100.0 1.7E-41 3.6E-46 337.0 24.5 194 333-530 3-225 (233)
85 PRK09544 znuC high-affinity zi 100.0 1.9E-41 4.1E-46 340.1 25.0 200 334-539 3-208 (251)
86 cd03235 ABC_Metallic_Cations A 100.0 5.6E-42 1.2E-46 335.7 20.6 188 338-527 2-209 (213)
87 PRK10619 histidine/lysine/argi 100.0 2.3E-41 5.1E-46 340.9 25.6 203 333-539 3-240 (257)
88 PRK09984 phosphonate/organopho 100.0 2.3E-41 5E-46 341.9 25.4 203 333-540 2-242 (262)
89 cd03264 ABC_drug_resistance_li 100.0 1.5E-41 3.2E-46 332.2 23.2 190 336-530 1-209 (211)
90 TIGR03411 urea_trans_UrtD urea 100.0 2.9E-41 6.3E-46 337.1 25.6 201 334-539 1-230 (242)
91 PRK10908 cell division protein 100.0 2.5E-41 5.5E-46 333.2 24.8 193 335-530 1-217 (222)
92 PRK13643 cbiO cobalt transport 100.0 2.2E-41 4.7E-46 346.5 25.0 203 335-539 1-232 (288)
93 PRK11248 tauB taurine transpor 100.0 2.4E-41 5.1E-46 340.3 24.7 192 335-530 1-211 (255)
94 PRK11264 putative amino-acid A 100.0 3.6E-41 7.7E-46 338.1 25.9 200 335-539 3-232 (250)
95 COG0411 LivG ABC-type branched 100.0 3E-42 6.5E-47 331.2 17.2 203 333-540 2-239 (250)
96 PRK11819 putative ABC transpor 100.0 3.7E-41 8E-46 374.6 28.5 204 333-540 4-250 (556)
97 cd03218 ABC_YhbG The ABC trans 100.0 2.3E-41 5E-46 335.7 23.9 198 336-538 1-220 (232)
98 PRK15079 oligopeptide ABC tran 100.0 2.9E-41 6.2E-46 351.0 25.7 205 332-537 5-248 (331)
99 PRK10851 sulfate/thiosulfate t 100.0 3.7E-41 8E-46 352.9 26.4 199 335-538 2-224 (353)
100 cd03224 ABC_TM1139_LivF_branch 100.0 2.2E-41 4.8E-46 333.5 23.2 198 336-538 1-219 (222)
101 PRK13637 cbiO cobalt transport 100.0 3.8E-41 8.2E-46 344.5 25.8 202 335-539 2-233 (287)
102 TIGR03258 PhnT 2-aminoethylpho 100.0 3.5E-41 7.7E-46 353.7 26.0 200 335-539 5-227 (362)
103 PRK13631 cbiO cobalt transport 100.0 4.3E-41 9.4E-46 348.3 26.1 205 332-539 18-264 (320)
104 PRK14250 phosphate ABC transpo 100.0 4.5E-41 9.7E-46 335.7 25.2 199 335-538 3-219 (241)
105 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5E-41 1.1E-45 334.3 25.4 200 335-540 1-221 (236)
106 PRK11701 phnK phosphonate C-P 100.0 5.7E-41 1.2E-45 338.3 26.1 204 333-538 4-239 (258)
107 PRK09493 glnQ glutamine ABC tr 100.0 3.9E-41 8.4E-46 335.8 24.6 200 335-539 1-224 (240)
108 PRK10575 iron-hydroxamate tran 100.0 3.3E-41 7.3E-46 341.3 24.4 204 332-540 8-237 (265)
109 cd03257 ABC_NikE_OppD_transpor 100.0 3.9E-41 8.5E-46 332.9 24.3 196 335-530 1-226 (228)
110 PRK10584 putative ABC transpor 100.0 4.7E-41 1E-45 332.7 24.8 194 333-530 4-226 (228)
111 PRK15112 antimicrobial peptide 100.0 3.8E-41 8.3E-46 341.2 24.7 205 334-539 3-238 (267)
112 cd03263 ABC_subfamily_A The AB 100.0 3.7E-41 8E-46 331.5 23.9 198 336-537 1-218 (220)
113 PRK10895 lipopolysaccharide AB 100.0 4E-41 8.6E-46 336.0 24.4 200 335-539 3-225 (241)
114 TIGR02211 LolD_lipo_ex lipopro 100.0 4.5E-41 9.7E-46 331.1 24.4 191 335-529 1-220 (221)
115 TIGR03740 galliderm_ABC gallid 100.0 5.4E-41 1.2E-45 331.1 25.0 196 336-536 1-209 (223)
116 cd03292 ABC_FtsE_transporter F 100.0 2.2E-41 4.9E-46 331.6 22.1 190 336-528 1-214 (214)
117 PRK13634 cbiO cobalt transport 100.0 4.3E-41 9.3E-46 344.6 25.0 202 336-539 3-234 (290)
118 PRK11300 livG leucine/isoleuci 100.0 5.7E-41 1.2E-45 337.6 25.5 202 333-539 3-242 (255)
119 PRK11308 dppF dipeptide transp 100.0 5.4E-41 1.2E-45 348.6 26.0 214 333-547 3-259 (327)
120 cd03260 ABC_PstB_phosphate_tra 100.0 3.5E-41 7.5E-46 333.4 23.3 192 336-531 1-221 (227)
121 PRK11607 potG putrescine trans 100.0 6.8E-41 1.5E-45 353.4 26.8 203 332-539 16-238 (377)
122 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-39 2.6E-44 392.3 41.1 197 335-535 759-988 (1394)
123 PRK15064 ABC transporter ATP-b 100.0 4.3E-41 9.3E-46 372.5 26.4 203 335-540 1-242 (530)
124 KOG0054|consensus 100.0 2.9E-39 6.3E-44 375.4 42.5 201 333-537 1136-1360(1381)
125 TIGR01188 drrA daunorubicin re 100.0 3E-41 6.6E-46 347.7 23.2 193 343-540 1-213 (302)
126 PRK10636 putative ABC transpor 100.0 7.4E-41 1.6E-45 376.7 28.2 202 335-540 1-236 (638)
127 COG1117 PstB ABC-type phosphat 100.0 5.1E-42 1.1E-46 321.6 15.6 198 333-534 5-232 (253)
128 PRK13636 cbiO cobalt transport 100.0 8.5E-41 1.8E-45 341.3 25.9 204 333-539 3-230 (283)
129 PRK11124 artP arginine transpo 100.0 4.6E-41 1E-45 335.7 23.4 200 335-539 2-229 (242)
130 cd03225 ABC_cobalt_CbiO_domain 100.0 2.9E-41 6.2E-46 330.2 21.3 187 338-527 2-211 (211)
131 PRK13641 cbiO cobalt transport 100.0 6.9E-41 1.5E-45 342.7 25.0 202 335-539 2-233 (287)
132 TIGR03410 urea_trans_UrtE urea 100.0 5.8E-41 1.3E-45 332.4 23.6 199 336-539 1-220 (230)
133 TIGR01978 sufC FeS assembly AT 100.0 7E-41 1.5E-45 334.5 24.1 200 336-539 1-233 (243)
134 TIGR02769 nickel_nikE nickel i 100.0 7.1E-41 1.5E-45 338.9 24.3 203 335-538 2-238 (265)
135 PRK13646 cbiO cobalt transport 100.0 7.1E-41 1.5E-45 342.4 24.3 203 335-539 2-234 (286)
136 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9.4E-41 2E-45 333.5 24.6 198 336-538 1-223 (242)
137 COG4555 NatA ABC-type Na+ tran 100.0 7.6E-42 1.7E-46 317.5 15.4 211 335-550 1-233 (245)
138 cd03262 ABC_HisP_GlnQ_permease 100.0 4E-41 8.7E-46 329.5 21.5 189 336-528 1-213 (213)
139 PRK13548 hmuV hemin importer A 100.0 1.2E-40 2.5E-45 335.9 25.2 201 335-540 2-230 (258)
140 PRK11231 fecE iron-dicitrate t 100.0 9.1E-41 2E-45 336.2 24.3 200 335-539 2-226 (255)
141 PRK14242 phosphate transporter 100.0 1.5E-40 3.3E-45 334.1 25.8 202 332-538 3-235 (253)
142 TIGR02323 CP_lyasePhnK phospho 100.0 1.3E-40 2.9E-45 334.6 25.3 204 334-539 2-237 (253)
143 PRK13652 cbiO cobalt transport 100.0 2E-40 4.3E-45 337.7 26.4 203 334-539 2-226 (277)
144 PRK13638 cbiO cobalt transport 100.0 9.5E-41 2.1E-45 339.0 24.0 201 335-539 1-224 (271)
145 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.3E-41 1.8E-45 327.0 22.7 189 336-530 1-209 (211)
146 PRK15093 antimicrobial peptide 100.0 1.8E-40 4E-45 345.6 25.8 203 334-537 2-245 (330)
147 PRK11614 livF leucine/isoleuci 100.0 1.4E-40 3.1E-45 331.1 23.9 201 334-539 4-225 (237)
148 TIGR00972 3a0107s01c2 phosphat 100.0 2.3E-40 5E-45 331.7 25.4 199 335-539 1-231 (247)
149 TIGR03005 ectoine_ehuA ectoine 100.0 1.3E-40 2.9E-45 334.4 23.6 199 336-539 1-235 (252)
150 PRK10771 thiQ thiamine transpo 100.0 2.5E-40 5.4E-45 328.4 25.1 200 335-541 1-220 (232)
151 PRK13639 cbiO cobalt transport 100.0 1.9E-40 4.2E-45 337.4 24.7 202 335-539 1-225 (275)
152 PRK13543 cytochrome c biogenes 100.0 1.8E-40 3.9E-45 325.4 23.4 192 330-525 6-212 (214)
153 PRK10253 iron-enterobactin tra 100.0 1.9E-40 4.1E-45 335.7 24.2 201 334-539 6-232 (265)
154 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.2E-40 2.6E-45 337.9 22.6 198 337-539 26-249 (269)
155 PRK13649 cbiO cobalt transport 100.0 2.2E-40 4.8E-45 338.0 24.5 203 335-539 2-233 (280)
156 PRK09473 oppD oligopeptide tra 100.0 3.2E-40 6.9E-45 343.3 26.1 215 332-547 9-266 (330)
157 PRK10070 glycine betaine trans 100.0 3.7E-40 8.1E-45 349.1 26.7 198 336-538 29-252 (400)
158 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-40 5.5E-45 333.2 24.0 200 336-540 2-226 (256)
159 COG4152 ABC-type uncharacteriz 100.0 5.1E-41 1.1E-45 320.3 17.6 202 335-541 2-220 (300)
160 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.8E-40 8.3E-45 366.3 27.5 204 334-541 3-249 (552)
161 PRK14247 phosphate ABC transpo 100.0 5.5E-40 1.2E-44 329.5 26.0 202 334-539 2-233 (250)
162 PRK13650 cbiO cobalt transport 100.0 3.3E-40 7.1E-45 336.4 24.5 202 334-539 3-228 (279)
163 PRK13644 cbiO cobalt transport 100.0 3.6E-40 7.7E-45 335.2 24.5 201 335-539 1-223 (274)
164 TIGR01186 proV glycine betaine 100.0 2.1E-40 4.5E-45 347.1 23.5 191 344-539 2-218 (363)
165 PRK14268 phosphate ABC transpo 100.0 5.6E-40 1.2E-44 331.1 25.7 202 332-538 9-240 (258)
166 PRK14273 phosphate ABC transpo 100.0 6E-40 1.3E-44 330.1 25.7 202 333-539 5-237 (254)
167 PRK14248 phosphate ABC transpo 100.0 7E-40 1.5E-44 332.2 26.1 203 332-539 18-251 (268)
168 PRK13635 cbiO cobalt transport 100.0 4.9E-40 1.1E-44 335.0 25.0 203 333-539 3-228 (279)
169 PRK11022 dppD dipeptide transp 100.0 5.5E-40 1.2E-44 341.1 25.6 202 335-537 3-240 (326)
170 PRK13645 cbiO cobalt transport 100.0 5.6E-40 1.2E-44 336.4 25.2 203 334-538 5-238 (289)
171 PRK10744 pstB phosphate transp 100.0 1E-39 2.3E-44 329.5 26.2 202 333-539 11-243 (260)
172 COG1245 Predicted ATPase, RNas 100.0 2.7E-39 5.9E-44 331.2 29.3 323 177-555 213-565 (591)
173 PRK15439 autoinducer 2 ABC tra 100.0 7E-40 1.5E-44 360.9 26.6 202 333-539 9-228 (510)
174 PRK10418 nikD nickel transport 100.0 1.3E-39 2.9E-44 327.6 26.3 203 334-539 3-229 (254)
175 PRK14267 phosphate ABC transpo 100.0 1.1E-39 2.4E-44 327.9 25.2 202 334-539 3-236 (253)
176 PLN03140 ABC transporter G fam 100.0 3.6E-38 7.9E-43 378.5 42.9 197 335-535 867-1105(1470)
177 PRK14235 phosphate transporter 100.0 1.9E-39 4.2E-44 328.7 26.9 202 332-538 16-249 (267)
178 PRK11147 ABC transporter ATPas 100.0 1.5E-39 3.2E-44 366.7 28.9 201 335-541 3-244 (635)
179 PRK11144 modC molybdate transp 100.0 1.2E-39 2.6E-44 342.2 25.8 197 335-539 1-217 (352)
180 PRK10419 nikE nickel transport 100.0 1.1E-39 2.5E-44 330.5 24.7 203 334-537 2-238 (268)
181 PRK10247 putative ABC transpor 100.0 8E-40 1.7E-44 323.3 22.9 187 333-524 5-211 (225)
182 TIGR01277 thiQ thiamine ABC tr 100.0 9.9E-40 2.1E-44 319.9 23.1 189 336-530 1-209 (213)
183 cd03297 ABC_ModC_molybdenum_tr 100.0 8.3E-40 1.8E-44 320.6 22.6 184 340-530 5-212 (214)
184 PRK13633 cobalt transporter AT 100.0 1.2E-39 2.7E-44 332.3 24.6 202 334-539 3-232 (280)
185 PRK15056 manganese/iron transp 100.0 1.1E-39 2.4E-44 331.4 24.0 201 335-538 6-228 (272)
186 PRK13632 cbiO cobalt transport 100.0 1.4E-39 3.1E-44 330.4 24.8 202 333-538 5-229 (271)
187 PRK14254 phosphate ABC transpo 100.0 1.9E-39 4.1E-44 331.5 25.7 203 331-538 35-267 (285)
188 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-39 4.1E-44 322.1 24.8 199 336-539 1-219 (232)
189 PRK13538 cytochrome c biogenes 100.0 8.3E-40 1.8E-44 318.4 21.6 185 335-523 1-202 (204)
190 PRK13648 cbiO cobalt transport 100.0 1.5E-39 3.2E-44 330.0 24.3 203 333-539 5-230 (269)
191 cd03223 ABCD_peroxisomal_ALDP 100.0 1.2E-39 2.7E-44 306.9 21.6 165 336-528 1-165 (166)
192 PRK14241 phosphate transporter 100.0 3E-39 6.4E-44 325.8 25.8 200 335-538 4-240 (258)
193 PRK14270 phosphate ABC transpo 100.0 2.1E-39 4.6E-44 325.5 24.7 201 333-538 2-233 (251)
194 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-39 3.3E-44 322.0 23.2 200 335-540 2-226 (229)
195 PRK09700 D-allose transporter 100.0 9.8E-40 2.1E-44 360.1 24.1 202 333-539 3-233 (510)
196 PRK13640 cbiO cobalt transport 100.0 2.6E-39 5.5E-44 330.3 25.4 203 333-539 3-231 (282)
197 PRK14274 phosphate ABC transpo 100.0 3.8E-39 8.3E-44 325.2 26.2 204 331-539 8-242 (259)
198 cd03245 ABCC_bacteriocin_expor 100.0 1.4E-39 3E-44 320.3 22.3 191 336-530 3-218 (220)
199 PRK14245 phosphate ABC transpo 100.0 3.1E-39 6.7E-44 324.1 25.3 201 334-539 2-233 (250)
200 COG0410 LivF ABC-type branched 100.0 2E-39 4.2E-44 309.5 22.3 203 334-540 2-226 (237)
201 PRK10762 D-ribose transporter 100.0 1.6E-39 3.4E-44 357.6 25.0 200 334-538 3-228 (501)
202 PRK14256 phosphate ABC transpo 100.0 4E-39 8.7E-44 323.7 25.8 201 334-538 3-234 (252)
203 PRK14239 phosphate transporter 100.0 4E-39 8.6E-44 323.6 25.8 201 333-538 3-234 (252)
204 PRK14238 phosphate transporter 100.0 3.1E-39 6.7E-44 327.9 25.1 201 332-538 21-253 (271)
205 PRK14269 phosphate ABC transpo 100.0 2.9E-39 6.3E-44 323.6 24.5 199 335-538 2-228 (246)
206 COG3840 ThiQ ABC-type thiamine 100.0 5.4E-40 1.2E-44 300.5 17.3 197 335-538 1-217 (231)
207 PRK14272 phosphate ABC transpo 100.0 4.5E-39 9.7E-44 323.3 25.8 201 335-539 4-235 (252)
208 COG0444 DppD ABC-type dipeptid 100.0 2.3E-39 5E-44 324.0 23.4 215 335-549 1-260 (316)
209 PRK14262 phosphate ABC transpo 100.0 3.9E-39 8.5E-44 323.4 25.3 201 334-539 2-233 (250)
210 PRK14259 phosphate ABC transpo 100.0 4.6E-39 1E-43 326.3 25.7 190 332-525 10-228 (269)
211 TIGR03415 ABC_choXWV_ATP choli 100.0 3.9E-39 8.4E-44 339.0 25.9 194 340-538 29-252 (382)
212 PRK14251 phosphate ABC transpo 100.0 4E-39 8.7E-44 323.5 24.9 200 334-538 3-233 (251)
213 PRK14275 phosphate ABC transpo 100.0 4.4E-39 9.6E-44 329.1 25.3 203 332-539 36-269 (286)
214 CHL00131 ycf16 sulfate ABC tra 100.0 6.2E-39 1.3E-43 322.3 25.8 199 333-536 5-237 (252)
215 PRK14237 phosphate transporter 100.0 7.9E-39 1.7E-43 324.3 26.7 201 333-538 18-249 (267)
216 PRK14240 phosphate transporter 100.0 7E-39 1.5E-43 321.6 25.8 200 335-539 3-233 (250)
217 PRK13549 xylose transporter AT 100.0 3.5E-39 7.6E-44 355.3 25.8 200 334-538 4-230 (506)
218 TIGR03608 L_ocin_972_ABC putat 100.0 1.8E-39 3.9E-44 316.2 20.8 181 338-523 1-206 (206)
219 TIGR00968 3a0106s01 sulfate AB 100.0 5.1E-39 1.1E-43 320.1 24.4 199 336-539 1-219 (237)
220 cd03299 ABC_ModC_like Archeal 100.0 5.1E-39 1.1E-43 319.6 24.3 198 336-539 1-218 (235)
221 COG1137 YhbG ABC-type (unclass 100.0 1.5E-40 3.2E-45 308.6 12.3 201 334-539 3-227 (243)
222 PRK13547 hmuV hemin importer A 100.0 4.7E-39 1E-43 326.3 24.4 200 335-539 1-243 (272)
223 PRK14271 phosphate ABC transpo 100.0 1.2E-38 2.5E-43 324.3 27.4 203 332-539 18-250 (276)
224 PRK14255 phosphate ABC transpo 100.0 5.7E-39 1.2E-43 322.5 24.7 199 333-536 3-232 (252)
225 PRK13642 cbiO cobalt transport 100.0 5.5E-39 1.2E-43 327.1 24.8 202 334-539 3-228 (277)
226 TIGR02324 CP_lyasePhnL phospho 100.0 4.6E-39 9.9E-44 317.6 23.5 188 335-524 1-223 (224)
227 cd03252 ABCC_Hemolysin The ABC 100.0 5.4E-39 1.2E-43 319.7 23.8 199 336-540 1-225 (237)
228 PRK14265 phosphate ABC transpo 100.0 1E-38 2.2E-43 324.6 26.1 203 332-539 17-257 (274)
229 PRK10261 glutathione transport 100.0 3.7E-39 8E-44 362.5 25.0 206 332-538 9-256 (623)
230 PRK09580 sufC cysteine desulfu 100.0 1E-38 2.2E-43 319.9 25.5 200 335-538 1-233 (248)
231 TIGR02142 modC_ABC molybdenum 100.0 6.8E-39 1.5E-43 336.9 25.4 193 340-539 4-220 (354)
232 PRK14249 phosphate ABC transpo 100.0 1.2E-38 2.7E-43 320.0 25.8 200 334-538 3-233 (251)
233 PRK11288 araG L-arabinose tran 100.0 6.2E-39 1.3E-43 352.9 25.6 193 334-530 3-220 (501)
234 cd03267 ABC_NatA_like Similar 100.0 4.3E-39 9.2E-44 320.4 22.0 185 343-530 29-234 (236)
235 cd03230 ABC_DR_subfamily_A Thi 100.0 5.2E-39 1.1E-43 304.7 21.5 160 336-528 1-173 (173)
236 cd03231 ABC_CcmA_heme_exporter 100.0 5.7E-39 1.2E-43 311.8 22.3 184 336-523 1-198 (201)
237 PRK14236 phosphate transporter 100.0 1.7E-38 3.7E-43 322.6 26.8 203 332-539 22-255 (272)
238 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-38 2.2E-43 317.2 24.5 198 336-539 1-224 (234)
239 PRK14253 phosphate ABC transpo 100.0 1.1E-38 2.4E-43 319.9 25.0 199 335-538 3-231 (249)
240 PRK14243 phosphate transporter 100.0 1.1E-38 2.3E-43 322.7 25.0 201 333-538 8-246 (264)
241 PRK14246 phosphate ABC transpo 100.0 1.4E-38 3E-43 320.6 25.7 203 333-539 8-240 (257)
242 TIGR02982 heterocyst_DevA ABC 100.0 7.2E-39 1.6E-43 315.4 22.3 190 335-528 1-219 (220)
243 TIGR03269 met_CoM_red_A2 methy 100.0 8.2E-39 1.8E-43 353.6 25.4 202 336-541 1-259 (520)
244 cd03244 ABCC_MRP_domain2 Domai 100.0 7.6E-39 1.6E-43 315.3 22.4 191 336-530 3-217 (221)
245 TIGR02633 xylG D-xylose ABC tr 100.0 9.2E-39 2E-43 351.6 25.3 194 335-531 1-222 (500)
246 cd03215 ABC_Carb_Monos_II This 100.0 6.9E-39 1.5E-43 306.4 21.0 165 333-528 2-182 (182)
247 PRK14244 phosphate ABC transpo 100.0 1.3E-38 2.7E-43 319.9 23.9 198 336-538 6-235 (251)
248 cd03214 ABC_Iron-Siderophores_ 100.0 3.2E-39 7E-44 308.1 18.4 174 337-530 1-178 (180)
249 COG4181 Predicted ABC-type tra 100.0 3.6E-39 7.7E-44 292.2 17.6 191 335-529 6-225 (228)
250 PRK13539 cytochrome c biogenes 100.0 1.1E-38 2.3E-43 311.3 22.4 185 335-525 2-200 (207)
251 cd03253 ABCC_ATM1_transporter 100.0 1.5E-38 3.2E-43 316.4 23.8 199 336-540 1-224 (236)
252 PRK14258 phosphate ABC transpo 100.0 2.9E-38 6.3E-43 319.1 26.3 201 334-539 6-244 (261)
253 PRK15134 microcin C ABC transp 100.0 1.3E-38 2.8E-43 352.6 25.4 205 333-538 3-244 (529)
254 PRK10938 putative molybdenum t 100.0 6.7E-39 1.5E-43 351.8 22.5 200 335-538 3-222 (490)
255 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.5E-38 7.6E-43 307.5 24.8 185 334-530 5-203 (207)
256 PRK14264 phosphate ABC transpo 100.0 4.3E-38 9.3E-43 324.6 26.8 208 327-539 37-288 (305)
257 cd03229 ABC_Class3 This class 100.0 1.2E-38 2.6E-43 303.6 21.0 161 336-527 1-178 (178)
258 COG4598 HisP ABC-type histidin 100.0 1.4E-39 3E-44 296.8 13.6 200 334-538 5-239 (256)
259 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.8E-38 3.9E-43 316.2 22.9 199 336-540 1-226 (238)
260 PRK14261 phosphate ABC transpo 100.0 3.8E-38 8.2E-43 316.8 25.3 202 333-539 4-236 (253)
261 cd03234 ABCG_White The White s 100.0 1.8E-38 4E-43 313.8 22.4 193 335-530 3-224 (226)
262 PRK14252 phosphate ABC transpo 100.0 4.3E-38 9.4E-43 318.5 25.6 201 333-538 14-247 (265)
263 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.3E-38 4.9E-43 321.1 23.5 197 336-539 3-224 (275)
264 cd03248 ABCC_TAP TAP, the Tran 100.0 1.9E-38 4.1E-43 313.6 22.4 192 332-528 8-226 (226)
265 cd03250 ABCC_MRP_domain1 Domai 100.0 2.1E-38 4.6E-43 308.4 22.2 185 336-527 1-204 (204)
266 cd03246 ABCC_Protease_Secretio 100.0 1.6E-38 3.5E-43 301.3 20.2 158 336-528 1-173 (173)
267 PRK14260 phosphate ABC transpo 100.0 5.5E-38 1.2E-42 316.7 25.3 200 334-538 6-241 (259)
268 cd03247 ABCC_cytochrome_bd The 100.0 2.6E-38 5.5E-43 301.3 21.4 163 336-530 1-176 (178)
269 cd03216 ABC_Carb_Monos_I This 100.0 2.8E-38 6.1E-43 296.7 21.3 158 336-529 1-161 (163)
270 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.5E-38 3.2E-43 314.0 20.2 190 336-530 23-222 (224)
271 COG4175 ProV ABC-type proline/ 100.0 1.6E-38 3.4E-43 313.3 20.0 192 351-546 43-268 (386)
272 TIGR02770 nickel_nikD nickel i 100.0 3.5E-38 7.7E-43 312.6 22.5 188 351-539 1-214 (230)
273 PRK13540 cytochrome c biogenes 100.0 2.9E-38 6.3E-43 306.5 21.2 178 335-516 1-193 (200)
274 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4E-38 8.7E-43 289.6 20.8 144 336-527 1-144 (144)
275 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.1E-38 1.1E-42 314.1 23.0 205 343-551 1-221 (246)
276 TIGR01184 ntrCD nitrate transp 100.0 3.7E-38 8E-43 312.5 21.5 176 352-530 1-195 (230)
277 PRK10982 galactose/methyl gala 100.0 4.3E-38 9.4E-43 345.4 24.4 196 338-538 1-221 (491)
278 cd03290 ABCC_SUR1_N The SUR do 100.0 5E-38 1.1E-42 308.9 22.2 187 337-527 2-218 (218)
279 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.1E-38 1.5E-42 303.8 22.7 168 336-531 1-186 (200)
280 PRK14263 phosphate ABC transpo 100.0 1.6E-37 3.4E-42 313.6 26.0 202 333-539 6-244 (261)
281 TIGR01189 ccmA heme ABC export 100.0 3.4E-38 7.3E-43 305.6 20.2 180 336-521 1-196 (198)
282 PRK13546 teichoic acids export 100.0 2.7E-37 5.8E-42 312.0 27.3 190 347-542 35-234 (264)
283 cd03213 ABCG_EPDR ABCG transpo 100.0 9.5E-38 2.1E-42 301.5 22.5 172 334-530 2-192 (194)
284 COG1123 ATPase components of v 100.0 9.7E-38 2.1E-42 333.4 23.8 214 333-547 3-259 (539)
285 PRK14266 phosphate ABC transpo 100.0 1.7E-37 3.8E-42 311.4 24.3 200 335-539 3-233 (250)
286 COG4559 ABC-type hemin transpo 100.0 6.3E-38 1.4E-42 293.6 19.3 207 335-546 1-237 (259)
287 PRK13545 tagH teichoic acids e 100.0 3.7E-37 8E-42 330.2 28.0 202 332-539 18-231 (549)
288 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.3E-38 2E-42 356.0 24.9 200 335-539 451-672 (686)
289 COG4988 CydD ABC-type transpor 100.0 8.7E-38 1.9E-42 332.5 22.2 199 335-538 320-541 (559)
290 COG1119 ModF ABC-type molybden 100.0 1.6E-38 3.4E-43 305.5 14.9 198 331-530 27-253 (257)
291 cd03228 ABCC_MRP_Like The MRP 100.0 9.4E-38 2E-42 295.5 20.1 157 336-527 1-171 (171)
292 PRK14257 phosphate ABC transpo 100.0 3E-37 6.4E-42 320.7 25.6 203 332-538 77-311 (329)
293 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-37 3.4E-42 299.5 21.8 171 335-530 3-190 (192)
294 cd03288 ABCC_SUR2 The SUR doma 100.0 2.4E-37 5.3E-42 311.7 23.9 202 333-540 17-243 (257)
295 cd03233 ABC_PDR_domain1 The pl 100.0 3.7E-37 7.9E-42 299.3 23.1 177 335-530 3-200 (202)
296 COG2274 SunT ABC-type bacterio 100.0 8.3E-38 1.8E-42 350.1 21.1 202 334-540 470-696 (709)
297 cd03291 ABCC_CFTR1 The CFTR su 100.0 8E-37 1.7E-41 310.9 26.0 199 332-540 36-247 (282)
298 COG4525 TauB ABC-type taurine 100.0 1.5E-37 3.2E-42 287.3 18.3 193 334-530 2-215 (259)
299 PRK11174 cysteine/glutathione 100.0 2.7E-37 5.9E-42 346.5 23.8 200 335-540 349-572 (588)
300 COG4604 CeuD ABC-type enteroch 100.0 1.6E-38 3.5E-43 294.2 11.1 209 335-548 1-234 (252)
301 PRK10790 putative multidrug tr 100.0 3.6E-37 7.9E-42 345.7 24.3 201 334-539 339-562 (592)
302 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.9E-37 6.2E-42 353.4 23.8 201 334-539 476-699 (710)
303 PRK03695 vitamin B12-transport 100.0 6.5E-37 1.4E-41 306.9 22.0 193 337-539 2-221 (248)
304 COG4161 ArtP ABC-type arginine 100.0 2.7E-37 5.9E-42 277.2 16.4 199 336-539 3-229 (242)
305 PRK11176 lipid transporter ATP 100.0 5.2E-37 1.1E-41 343.9 22.6 201 335-540 341-567 (582)
306 TIGR01166 cbiO cobalt transpor 100.0 3.1E-37 6.6E-42 296.9 17.4 164 347-512 3-189 (190)
307 COG1129 MglA ABC-type sugar tr 100.0 1.2E-36 2.5E-41 323.2 23.1 195 332-530 5-225 (500)
308 TIGR01193 bacteriocin_ABC ABC- 100.0 7.3E-37 1.6E-41 349.8 23.2 200 335-539 473-696 (708)
309 KOG0057|consensus 100.0 9.9E-37 2.1E-41 319.8 21.6 201 334-540 350-574 (591)
310 TIGR03771 anch_rpt_ABC anchore 100.0 1.6E-36 3.4E-41 299.4 21.4 181 357-540 1-201 (223)
311 PRK13541 cytochrome c biogenes 100.0 1.2E-36 2.7E-41 293.9 20.2 176 335-515 1-188 (195)
312 TIGR03375 type_I_sec_LssB type 100.0 1.5E-36 3.2E-41 346.5 24.3 202 334-540 462-688 (694)
313 COG4608 AppF ABC-type oligopep 100.0 6.6E-37 1.4E-41 300.3 18.2 194 334-548 3-215 (268)
314 PLN03073 ABC transporter F fam 100.0 3.2E-36 7E-41 340.7 26.5 196 333-540 175-431 (718)
315 PRK11160 cysteine/glutathione 100.0 2.1E-36 4.5E-41 337.9 24.4 201 334-539 337-561 (574)
316 COG4987 CydC ABC-type transpor 100.0 2.9E-37 6.4E-42 323.6 16.3 201 335-540 336-561 (573)
317 TIGR01257 rim_protein retinal- 100.0 4.1E-36 8.9E-41 362.9 28.0 206 333-542 926-1151(2272)
318 COG4619 ABC-type uncharacteriz 100.0 1.2E-37 2.6E-42 281.5 10.9 190 336-529 4-213 (223)
319 PRK13657 cyclic beta-1,2-gluca 100.0 2.7E-36 6E-41 338.3 24.1 201 334-539 333-557 (588)
320 TIGR01842 type_I_sec_PrtD type 100.0 3.2E-36 7E-41 334.7 23.1 201 334-540 315-542 (544)
321 TIGR00958 3a01208 Conjugate Tr 100.0 3.2E-36 7E-41 343.9 23.6 202 334-540 477-702 (711)
322 cd03222 ABC_RNaseL_inhibitor T 100.0 3.9E-36 8.5E-41 284.8 19.4 154 339-539 4-162 (177)
323 TIGR02203 MsbA_lipidA lipid A 100.0 4.2E-36 9E-41 335.9 22.9 199 335-538 330-554 (571)
324 TIGR01192 chvA glucan exporter 100.0 9.4E-36 2E-40 333.2 25.7 201 334-540 333-558 (585)
325 TIGR00954 3a01203 Peroxysomal 100.0 6.2E-36 1.3E-40 337.9 24.2 187 334-525 450-653 (659)
326 TIGR01257 rim_protein retinal- 100.0 8.2E-36 1.8E-40 360.3 26.4 205 334-542 1936-2161(2272)
327 COG3845 ABC-type uncharacteriz 100.0 5.8E-36 1.3E-40 311.7 20.5 194 333-530 2-220 (501)
328 COG1132 MdlB ABC-type multidru 100.0 6.4E-36 1.4E-40 333.9 22.4 201 335-540 328-552 (567)
329 COG4674 Uncharacterized ABC-ty 100.0 3.4E-36 7.3E-41 278.4 15.5 202 333-539 3-234 (249)
330 PRK10789 putative multidrug tr 100.0 1.4E-35 3.1E-40 330.9 23.6 201 334-539 312-537 (569)
331 PRK10522 multidrug transporter 100.0 1.2E-35 2.6E-40 330.1 22.8 196 334-536 321-535 (547)
332 KOG0058|consensus 100.0 6.3E-36 1.4E-40 323.9 19.4 202 334-540 464-691 (716)
333 PRK15177 Vi polysaccharide exp 100.0 3.2E-35 6.9E-40 288.0 22.4 185 350-540 1-192 (213)
334 KOG0055|consensus 100.0 8.1E-36 1.8E-40 339.5 19.3 201 334-539 349-575 (1228)
335 TIGR02204 MsbA_rel ABC transpo 100.0 2.7E-35 5.8E-40 329.7 23.1 201 334-539 336-562 (576)
336 TIGR01846 type_I_sec_HlyB type 100.0 2.2E-35 4.8E-40 336.8 22.6 201 334-539 454-679 (694)
337 COG4107 PhnK ABC-type phosphon 100.0 2.3E-35 5E-40 267.9 16.5 211 333-544 4-253 (258)
338 TIGR02857 CydD thiol reductant 100.0 6.1E-35 1.3E-39 323.6 21.6 185 335-523 320-529 (529)
339 TIGR02868 CydC thiol reductant 100.0 3.8E-35 8.3E-40 325.2 19.8 174 334-510 333-529 (529)
340 PLN03211 ABC transporter G-25; 100.0 1.1E-34 2.3E-39 326.5 22.6 200 337-540 70-296 (659)
341 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.3E-35 1.4E-39 293.1 18.3 182 339-525 4-214 (255)
342 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.3E-35 2E-39 323.4 21.1 191 334-530 336-550 (555)
343 COG4586 ABC-type uncharacteriz 100.0 7.5E-35 1.6E-39 282.3 15.3 190 350-542 38-248 (325)
344 PRK10535 macrolide transporter 100.0 5.5E-34 1.2E-38 321.8 24.8 194 334-531 3-224 (648)
345 cd03238 ABC_UvrA The excision 100.0 3.2E-34 6.9E-39 271.5 18.6 148 349-528 8-166 (176)
346 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.2E-34 9.1E-39 266.7 19.0 142 338-527 2-157 (157)
347 TIGR01187 potA spermidine/putr 100.0 3.3E-34 7.2E-39 298.0 20.3 169 367-539 1-189 (325)
348 COG4148 ModC ABC-type molybdat 100.0 8.6E-35 1.9E-39 282.4 14.8 181 353-537 15-215 (352)
349 COG4172 ABC-type uncharacteriz 100.0 4.5E-34 9.7E-39 289.3 19.7 215 332-546 3-261 (534)
350 PTZ00265 multidrug resistance 100.0 1.4E-33 3E-38 340.4 22.6 188 335-526 382-655 (1466)
351 COG1134 TagH ABC-type polysacc 100.0 8.9E-33 1.9E-37 266.2 22.5 194 348-546 39-242 (249)
352 PRK13409 putative ATPase RIL; 100.0 1.4E-33 3.1E-38 313.7 18.4 182 340-526 78-287 (590)
353 COG4618 ArpD ABC-type protease 100.0 6E-33 1.3E-37 288.7 20.3 204 334-542 333-562 (580)
354 COG4133 CcmA ABC-type transpor 100.0 2E-33 4.3E-38 259.4 13.9 176 335-514 2-194 (209)
355 KOG0062|consensus 100.0 5.4E-34 1.2E-38 296.6 11.4 200 335-541 80-286 (582)
356 COG4167 SapF ABC-type antimicr 100.0 5E-33 1.1E-37 254.6 16.1 201 334-534 3-234 (267)
357 TIGR00957 MRP_assoc_pro multi 100.0 4.1E-32 8.9E-37 330.5 24.7 197 335-539 636-849 (1522)
358 COG1101 PhnK ABC-type uncharac 100.0 1E-32 2.2E-37 259.2 13.9 194 336-530 2-229 (263)
359 PLN03232 ABC transporter C fam 100.0 5E-32 1.1E-36 329.3 23.4 200 334-539 613-827 (1495)
360 TIGR00955 3a01204 The Eye Pigm 100.0 6E-32 1.3E-36 303.8 21.7 190 347-540 36-256 (617)
361 PLN03130 ABC transporter C fam 100.0 9.3E-32 2E-36 327.4 23.7 200 334-540 613-828 (1622)
362 COG0396 sufC Cysteine desulfur 100.0 4.4E-31 9.6E-36 251.2 22.8 202 334-540 2-233 (251)
363 COG4136 ABC-type uncharacteriz 100.0 3.7E-32 8.1E-37 241.5 13.3 184 335-523 2-207 (213)
364 KOG0927|consensus 100.0 4.6E-32 1E-36 283.7 16.1 199 335-543 75-312 (614)
365 TIGR01271 CFTR_protein cystic 100.0 2.2E-31 4.7E-36 323.4 24.0 184 349-539 439-635 (1490)
366 cd03270 ABC_UvrA_I The excisio 100.0 5.1E-31 1.1E-35 260.5 20.5 180 347-530 6-224 (226)
367 PRK00349 uvrA excinuclease ABC 100.0 1.5E-29 3.3E-34 290.8 30.0 105 433-539 810-926 (943)
368 PRK00635 excinuclease ABC subu 100.0 1.2E-29 2.5E-34 302.7 30.0 104 435-540 791-906 (1809)
369 PTZ00243 ABC transporter; Prov 100.0 3.8E-30 8.3E-35 312.9 23.8 185 348-540 672-870 (1560)
370 COG4778 PhnL ABC-type phosphon 100.0 6.2E-31 1.3E-35 238.3 12.3 189 335-525 4-227 (235)
371 TIGR00956 3a01205 Pleiotropic 100.0 4.6E-30 9.9E-35 309.6 23.2 190 348-540 73-300 (1394)
372 KOG0056|consensus 100.0 1.1E-30 2.3E-35 269.2 14.3 200 334-538 536-759 (790)
373 TIGR00630 uvra excinuclease AB 100.0 9.1E-29 2E-33 283.8 30.9 102 434-537 809-922 (924)
374 PLN03140 ABC transporter G fam 100.0 4E-30 8.7E-35 309.3 20.0 190 348-540 177-427 (1470)
375 cd03278 ABC_SMC_barmotin Barmo 100.0 4.4E-29 9.6E-34 241.4 15.8 154 353-525 14-190 (197)
376 COG5265 ATM1 ABC-type transpor 100.0 2.6E-29 5.6E-34 256.4 13.9 200 334-538 261-484 (497)
377 KOG0059|consensus 100.0 7.6E-29 1.6E-33 287.7 18.1 204 334-541 563-788 (885)
378 KOG0054|consensus 100.0 7.5E-28 1.6E-32 280.6 23.1 203 331-540 514-731 (1381)
379 KOG0061|consensus 100.0 2.3E-27 5E-32 264.7 22.5 202 334-539 24-259 (613)
380 PF00005 ABC_tran: ABC transpo 100.0 1.2E-28 2.7E-33 223.9 9.9 123 352-482 1-137 (137)
381 cd03279 ABC_sbcCD SbcCD and ot 100.0 7.5E-28 1.6E-32 235.9 14.9 180 335-528 5-211 (213)
382 cd03271 ABC_UvrA_II The excisi 99.9 1.8E-26 3.9E-31 231.3 15.2 180 350-530 9-257 (261)
383 COG4178 ABC-type uncharacteriz 99.9 7.5E-26 1.6E-30 245.2 18.7 183 333-518 390-582 (604)
384 KOG0066|consensus 99.9 7.6E-27 1.6E-31 237.9 10.3 201 335-545 264-504 (807)
385 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.4E-26 7.5E-31 228.5 14.7 178 336-524 4-234 (243)
386 COG1126 GlnQ ABC-type polar am 99.9 1.1E-25 2.5E-30 212.6 14.8 188 59-252 2-227 (240)
387 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.6E-26 1.4E-30 227.7 13.8 162 362-524 25-242 (251)
388 COG4138 BtuD ABC-type cobalami 99.9 5.8E-27 1.3E-31 213.4 5.4 203 335-547 3-229 (248)
389 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.1E-27 8.8E-32 230.2 4.7 176 336-525 6-204 (212)
390 cd03240 ABC_Rad50 The catalyti 99.9 1.2E-25 2.6E-30 218.6 14.0 157 355-526 16-198 (204)
391 KOG0063|consensus 99.9 4E-24 8.7E-29 218.1 23.8 179 343-526 343-533 (592)
392 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.7E-24 3.8E-29 212.9 17.8 182 58-249 3-225 (254)
393 COG1120 FepC ABC-type cobalami 99.9 9.5E-25 2E-29 215.8 15.9 178 59-247 2-225 (258)
394 COG4615 PvdE ABC-type sideroph 99.9 2.3E-25 4.9E-30 225.5 10.2 194 335-533 322-531 (546)
395 COG1124 DppF ABC-type dipeptid 99.9 1.2E-24 2.7E-29 209.5 14.6 184 58-243 2-224 (252)
396 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.9E-24 4.2E-29 216.5 13.3 162 363-525 23-233 (247)
397 cd03276 ABC_SMC6_euk Eukaryoti 99.9 9.1E-24 2E-28 204.5 14.2 160 352-527 12-192 (198)
398 COG1116 TauB ABC-type nitrate/ 99.9 1.8E-23 4E-28 203.1 14.2 175 59-237 3-207 (248)
399 KOG2355|consensus 99.9 5.9E-23 1.3E-27 191.8 15.5 195 333-530 11-228 (291)
400 COG4170 SapD ABC-type antimicr 99.9 1.6E-23 3.4E-28 196.1 11.0 214 334-548 2-264 (330)
401 COG1118 CysA ABC-type sulfate/ 99.9 4E-23 8.6E-28 204.4 13.7 188 59-250 2-227 (345)
402 COG0178 UvrA Excinuclease ATPa 99.9 4.7E-21 1E-25 209.4 29.3 105 435-540 804-919 (935)
403 COG1125 OpuBA ABC-type proline 99.9 2.5E-22 5.3E-27 193.8 16.9 189 59-249 1-224 (309)
404 COG3842 PotA ABC-type spermidi 99.9 2.2E-22 4.7E-27 207.4 17.1 191 58-251 4-227 (352)
405 COG1122 CbiO ABC-type cobalt t 99.9 1.8E-22 3.9E-27 199.1 15.6 191 58-250 2-228 (235)
406 PRK00635 excinuclease ABC subu 99.9 2.1E-21 4.5E-26 232.5 26.5 104 435-540 1681-1796(1809)
407 KOG0060|consensus 99.9 5.7E-22 1.2E-26 209.6 19.0 190 332-525 430-641 (659)
408 COG3839 MalK ABC-type sugar tr 99.9 4.4E-22 9.5E-27 204.1 17.0 190 59-251 3-224 (338)
409 COG1135 AbcC ABC-type metal io 99.9 1.1E-21 2.4E-26 194.6 17.7 190 59-254 1-235 (339)
410 COG1127 Ttg2A ABC-type transpo 99.9 7E-22 1.5E-26 189.7 15.5 187 57-250 6-234 (263)
411 cd03265 ABC_DrrA DrrA is the A 99.9 1.8E-21 3.9E-26 191.6 18.2 181 60-242 1-213 (220)
412 cd03261 ABC_Org_Solvent_Resist 99.9 2E-21 4.3E-26 193.2 18.2 187 60-249 1-224 (235)
413 PRK11247 ssuB aliphatic sulfon 99.9 2.6E-21 5.6E-26 194.8 18.7 167 57-242 10-215 (257)
414 cd03259 ABC_Carb_Solutes_like 99.9 1.4E-21 3.1E-26 191.3 16.5 179 60-241 1-211 (213)
415 PRK14250 phosphate ABC transpo 99.9 1.5E-21 3.2E-26 195.0 16.8 187 59-249 3-220 (241)
416 cd03301 ABC_MalK_N The N-termi 99.9 2.2E-21 4.8E-26 189.9 17.2 180 60-242 1-212 (213)
417 PRK11432 fbpC ferric transport 99.9 2.6E-21 5.5E-26 202.9 18.6 173 59-244 6-220 (351)
418 COG0411 LivG ABC-type branched 99.9 1.5E-22 3.3E-27 195.3 8.4 185 58-249 3-237 (250)
419 cd03269 ABC_putative_ATPase Th 99.9 3.8E-21 8.2E-26 187.9 18.0 170 60-242 1-209 (210)
420 TIGR03265 PhnT2 putative 2-ami 99.9 2.2E-21 4.7E-26 203.7 17.4 178 59-249 4-223 (353)
421 TIGR01288 nodI ATP-binding ABC 99.9 3.5E-21 7.6E-26 198.7 18.6 176 58-247 3-220 (303)
422 PRK11000 maltose/maltodextrin 99.9 3.1E-21 6.8E-26 203.9 17.5 172 59-243 3-216 (369)
423 PRK13537 nodulation ABC transp 99.9 4.7E-21 1E-25 197.8 18.3 177 58-248 6-224 (306)
424 TIGR00960 3a0501s02 Type II (G 99.9 1.7E-21 3.7E-26 191.2 14.3 178 59-239 1-216 (216)
425 COG3638 ABC-type phosphate/pho 99.9 6.1E-21 1.3E-25 182.8 17.3 184 58-247 2-233 (258)
426 PRK13536 nodulation factor exp 99.9 4E-21 8.7E-26 200.7 17.6 184 57-242 39-253 (340)
427 PRK14269 phosphate ABC transpo 99.9 3.3E-21 7.1E-26 193.1 15.8 188 59-247 2-227 (246)
428 TIGR02314 ABC_MetN D-methionin 99.9 7.6E-21 1.7E-25 198.5 19.2 186 59-248 1-227 (343)
429 cd03296 ABC_CysA_sulfate_impor 99.9 6.1E-21 1.3E-25 190.2 17.6 175 59-247 2-222 (239)
430 cd03266 ABC_NatA_sodium_export 99.9 6.8E-21 1.5E-25 187.1 17.4 181 59-241 1-216 (218)
431 cd03293 ABC_NrtD_SsuB_transpor 99.9 8.7E-21 1.9E-25 186.7 17.9 169 60-241 1-214 (220)
432 cd03226 ABC_cobalt_CbiO_domain 99.9 5.7E-21 1.2E-25 186.0 16.3 177 62-240 2-205 (205)
433 PRK11650 ugpC glycerol-3-phosp 99.9 5.9E-21 1.3E-25 200.6 17.4 172 59-243 3-217 (356)
434 cd03280 ABC_MutS2 MutS2 homolo 99.9 4.9E-22 1.1E-26 192.8 8.4 141 351-529 16-169 (200)
435 TIGR03522 GldA_ABC_ATP gliding 99.9 1.1E-20 2.5E-25 194.7 19.1 188 59-249 2-219 (301)
436 PRK11248 tauB taurine transpor 99.9 9.2E-21 2E-25 190.8 17.8 171 59-242 1-212 (255)
437 PRK11701 phnK phosphonate C-P 99.9 9E-21 1.9E-25 191.2 17.5 188 58-248 5-238 (258)
438 PRK10851 sulfate/thiosulfate t 99.9 1E-20 2.2E-25 198.7 18.4 173 59-244 2-220 (353)
439 cd03256 ABC_PhnC_transporter A 99.9 8.3E-21 1.8E-25 189.3 16.8 187 60-249 1-232 (241)
440 TIGR02673 FtsE cell division A 99.9 9.1E-21 2E-25 185.7 16.8 177 59-238 1-214 (214)
441 PRK11153 metN DL-methionine tr 99.9 1.7E-20 3.6E-25 196.7 19.7 182 59-242 1-222 (343)
442 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.1E-20 2.3E-25 185.7 17.2 176 60-239 1-218 (218)
443 TIGR02315 ABC_phnC phosphonate 99.9 5.6E-21 1.2E-25 190.9 15.3 186 59-248 1-232 (243)
444 KOG0064|consensus 99.9 2.7E-21 5.8E-26 201.9 13.4 185 336-523 482-681 (728)
445 PRK09452 potA putrescine/sperm 99.9 1.1E-20 2.4E-25 199.6 18.3 189 58-249 13-233 (375)
446 cd03219 ABC_Mj1267_LivG_branch 99.9 5.7E-21 1.2E-25 190.0 15.2 184 60-247 1-228 (236)
447 PRK13651 cobalt transporter AT 99.9 1.3E-20 2.8E-25 194.3 18.1 188 59-249 2-253 (305)
448 PRK11831 putative ABC transpor 99.9 1.5E-20 3.3E-25 190.7 18.4 188 59-249 7-231 (269)
449 COG1131 CcmA ABC-type multidru 99.9 2.3E-20 4.9E-25 191.3 19.7 187 59-248 4-223 (293)
450 PRK11022 dppD dipeptide transp 99.9 6.7E-21 1.4E-25 198.2 16.0 186 59-244 3-237 (326)
451 cd03216 ABC_Carb_Monos_I This 99.9 7.7E-21 1.7E-25 178.4 14.7 146 60-241 1-162 (163)
452 PRK13638 cbiO cobalt transport 99.9 7.6E-21 1.6E-25 193.2 15.8 187 59-248 1-222 (271)
453 PRK11264 putative amino-acid A 99.9 1.3E-20 2.8E-25 189.1 17.1 188 59-249 3-231 (250)
454 cd03258 ABC_MetN_methionine_tr 99.9 9.6E-21 2.1E-25 188.0 16.0 185 59-247 1-226 (233)
455 PRK11607 potG putrescine trans 99.9 1.5E-20 3.3E-25 198.8 18.3 180 57-249 17-238 (377)
456 cd03264 ABC_drug_resistance_li 99.9 1.9E-20 4.2E-25 183.0 17.7 179 60-241 1-209 (211)
457 PRK09984 phosphonate/organopho 99.9 1.2E-20 2.7E-25 190.7 16.8 189 59-249 4-240 (262)
458 PRK10619 histidine/lysine/argi 99.9 1.5E-20 3.3E-25 189.4 17.3 188 59-249 5-239 (257)
459 cd03230 ABC_DR_subfamily_A Thi 99.9 1.3E-20 2.9E-25 178.5 15.8 156 60-239 1-173 (173)
460 KOG0065|consensus 99.9 1.3E-21 2.8E-26 223.8 10.4 187 348-537 803-1018(1391)
461 PRK13637 cbiO cobalt transport 99.8 7.2E-21 1.6E-25 194.8 14.6 186 59-248 2-231 (287)
462 cd03268 ABC_BcrA_bacitracin_re 99.8 1.9E-20 4.2E-25 182.6 16.9 179 60-241 1-206 (208)
463 PRK09493 glnQ glutamine ABC tr 99.8 2E-20 4.3E-25 186.7 17.3 187 59-249 1-223 (240)
464 PRK14242 phosphate transporter 99.8 1.5E-20 3.2E-25 189.1 16.3 192 56-248 3-234 (253)
465 COG4604 CeuD ABC-type enteroch 99.8 1.1E-20 2.4E-25 175.9 14.0 179 59-247 1-221 (252)
466 COG4555 NatA ABC-type Na+ tran 99.8 1.6E-20 3.5E-25 175.5 15.1 187 59-248 1-219 (245)
467 TIGR03410 urea_trans_UrtE urea 99.8 2E-20 4.2E-25 185.4 16.8 186 60-248 1-218 (230)
468 PRK13548 hmuV hemin importer A 99.8 1.3E-20 2.8E-25 190.1 15.8 187 59-249 2-228 (258)
469 cd03218 ABC_YhbG The ABC trans 99.8 2.7E-20 5.8E-25 184.7 17.8 186 60-248 1-219 (232)
470 PRK11124 artP arginine transpo 99.8 2.3E-20 4.9E-25 186.5 17.4 187 59-249 2-228 (242)
471 PRK10253 iron-enterobactin tra 99.8 1.1E-20 2.4E-25 191.4 15.1 188 56-247 4-229 (265)
472 PRK13647 cbiO cobalt transport 99.8 1.1E-20 2.4E-25 192.2 15.2 187 59-249 4-225 (274)
473 PRK10584 putative ABC transpor 99.8 4.2E-20 9E-25 182.8 18.8 181 58-241 5-226 (228)
474 COG0444 DppD ABC-type dipeptid 99.8 8.4E-21 1.8E-25 190.7 13.8 192 60-251 2-244 (316)
475 TIGR03258 PhnT 2-aminoethylpho 99.8 2.5E-20 5.5E-25 196.0 18.1 183 59-244 5-222 (362)
476 cd03260 ABC_PstB_phosphate_tra 99.8 1.7E-20 3.7E-25 185.4 15.9 181 60-242 1-221 (227)
477 cd03263 ABC_subfamily_A The AB 99.8 2.8E-20 6E-25 183.0 17.2 181 60-242 1-213 (220)
478 TIGR01978 sufC FeS assembly AT 99.8 2.6E-20 5.7E-25 185.9 17.2 189 60-249 1-232 (243)
479 PRK11614 livF leucine/isoleuci 99.8 6.3E-20 1.4E-24 182.7 19.8 186 58-248 4-223 (237)
480 COG4559 ABC-type hemin transpo 99.8 1.1E-20 2.4E-25 177.8 13.4 189 59-249 1-229 (259)
481 PRK10908 cell division protein 99.8 5.2E-20 1.1E-24 181.4 18.8 183 59-244 1-220 (222)
482 PRK15112 antimicrobial peptide 99.8 4.9E-20 1.1E-24 186.8 19.1 188 59-249 4-237 (267)
483 PRK11231 fecE iron-dicitrate t 99.8 1.7E-20 3.6E-25 188.9 15.4 187 59-249 2-225 (255)
484 PRK13646 cbiO cobalt transport 99.8 3E-20 6.4E-25 190.2 17.4 186 59-248 2-232 (286)
485 PRK14255 phosphate ABC transpo 99.8 8E-20 1.7E-24 183.6 20.2 182 58-250 4-236 (252)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.4E-20 5.1E-25 171.5 15.0 131 60-238 1-144 (144)
487 PRK09544 znuC high-affinity zi 99.8 5.6E-20 1.2E-24 184.6 19.0 172 59-249 4-207 (251)
488 TIGR02769 nickel_nikE nickel i 99.8 2.5E-20 5.5E-25 188.7 16.6 187 59-248 2-237 (265)
489 PRK13547 hmuV hemin importer A 99.8 2.1E-20 4.5E-25 189.9 15.9 186 59-246 1-239 (272)
490 cd03257 ABC_NikE_OppD_transpor 99.8 2.2E-20 4.7E-25 184.7 15.5 181 59-241 1-226 (228)
491 PRK14273 phosphate ABC transpo 99.8 1.6E-20 3.4E-25 189.0 14.8 190 57-247 5-234 (254)
492 PRK14271 phosphate ABC transpo 99.8 2.3E-20 5.1E-25 190.0 16.2 195 54-249 16-249 (276)
493 PRK13645 cbiO cobalt transport 99.8 3.9E-20 8.5E-25 189.7 17.9 185 58-244 5-234 (289)
494 PRK10575 iron-hydroxamate tran 99.8 1.6E-20 3.4E-25 190.3 14.8 188 58-248 10-234 (265)
495 PRK14261 phosphate ABC transpo 99.8 2.1E-20 4.5E-25 188.0 15.5 190 57-247 4-233 (253)
496 PRK13634 cbiO cobalt transport 99.8 1.6E-20 3.5E-25 192.5 15.0 186 59-248 2-232 (290)
497 TIGR03005 ectoine_ehuA ectoine 99.8 3.2E-20 7E-25 186.5 16.8 187 60-249 1-234 (252)
498 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 5.2E-20 1.1E-24 183.2 18.1 186 59-248 1-218 (236)
499 PRK14256 phosphate ABC transpo 99.8 2.8E-20 6.1E-25 187.0 16.2 184 59-242 4-228 (252)
500 cd03224 ABC_TM1139_LivF_branch 99.8 2.8E-20 6E-25 183.3 15.7 184 60-246 1-216 (222)
No 1
>KOG0066|consensus
Probab=100.00 E-value=3.4e-120 Score=916.04 Aligned_cols=542 Identities=60% Similarity=0.979 Sum_probs=512.6
Q ss_pred ChHHHHHHHHhHHHHHHHHhhcCCCCCcccc-cceeeecccccCCcccCCCCccceEEeeeEEEeCCceeeeeeeEEEeC
Q psy16366 6 SHKEKKQLKKQSKYQQELSALSGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIAS 84 (568)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~i~nls~~~~~~~ll~~isl~i~~ 84 (568)
..+|+||.++|++|+++++... ++.+++ +|||||.++ ++++.++++|++||+|+||+++..|+.+|.|+||+|..
T Consensus 214 egqek~kq~~Q~Eyerq~~g~~---~~~~l~n~FtvSQ~~k-s~~q~A~lEna~DIKiEnF~ISA~Gk~LFvnA~L~Iv~ 289 (807)
T KOG0066|consen 214 EGQEKKKQKDQEEYERQMEGIG---SGAELGNHFTVSQLSK-SGTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVY 289 (807)
T ss_pred cchhhhhhhHHHHHHHHhhccc---chhhhcccccHHHhhh-hhhHHHHHhhcccceeeeeeeecccceeeeccceEEEe
Confidence 4678999999999999987443 355777 999999999 87888899999999999999999999999999999999
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhccHHHHHHHHHHHHHhh-ccCCCh--
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLER-DESGDN-- 161 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~-~~~~~~-- 161 (568)
|+|||||||||.||||||++|+.+.+.||+++++++|+|++.++++++++.|+.+|..|..+++++..+.. ++.++.
T Consensus 290 GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~ta 369 (807)
T KOG0066|consen 290 GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTA 369 (807)
T ss_pred cceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888876 555554
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc-----------------------cCCCc--------------h---
Q psy16366 162 QLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-----------------------IYIPS--------------S--- 201 (568)
Q Consensus 162 ~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~-----------------------L~~eP--------------n--- 201 (568)
++++.+++++|+.+|++++++|+|+||+||||+. ||+|| |
T Consensus 370 aErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 370 AERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceee
Confidence 8899999999999999999999999999999975 44444 2
Q ss_pred HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Q psy16366 202 RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSK 281 (568)
Q Consensus 202 ~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (568)
||++||+.|++|+||||||+.||++||+.||||++.+++||+|||..|.+|+.|++++..+.|++|+++++++++.|.+.
T Consensus 450 WLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~ 529 (807)
T KOG0066|consen 450 WLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSA 529 (807)
T ss_pred ehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHhcc-cCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEE
Q psy16366 282 EKAERQHSHKALKEQA--RKRVQ-KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFG 358 (568)
Q Consensus 282 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~ 358 (568)
++++++.+..+++++. ..+.+ ..++..+++++.+|++|.++|.||.|+...||+|.+++|+|.|++.+++|++++|.
T Consensus 530 KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFG 609 (807)
T KOG0066|consen 530 KQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFG 609 (807)
T ss_pred HHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhccccc
Confidence 9999999888887654 33333 34556788999999999999999999999999999999999999999999999999
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 438 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~ 438 (568)
|+..++||||||||.||||||++|.|.+.|+.|+.+.+++.+||++.|+...++..+.|+.+|+.+.|+++++++|..|+
T Consensus 610 iDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG 689 (807)
T KOG0066|consen 610 IDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG 689 (807)
T ss_pred ccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCc
Q psy16366 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 518 (568)
Q Consensus 439 ~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~ 518 (568)
.|||..+.|+..+..||||||.||+||-..+..|+|||||||||+||++|+++|.++|++|.++|||||||.++|.++.|
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDC 769 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCeEEEEcCCHHHHHHHHHHHHhhhhh
Q psy16366 519 ELWALEKKNIRKFNGDFDDYREKLLTSLGEAMV 551 (568)
Q Consensus 519 ~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~ 551 (568)
.+||+++..|.+++|+|++|++++++.+++++.
T Consensus 770 ~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv~v 802 (807)
T KOG0066|consen 770 NLWVVENQGIDEIDGDFEDYKKEVLDALGEVLV 802 (807)
T ss_pred eEEEEccCChhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998
No 2
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.6e-88 Score=735.65 Aligned_cols=478 Identities=34% Similarity=0.547 Sum_probs=397.9
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc------CCCceEEEEeccccCCch-
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI------PSSIDLLYCEQEVEASDD- 130 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i------p~~~~i~~~~qe~~~~~~- 130 (568)
.+|+++|+|++|+++++|+++||+|.+|+||||||+||||||||||+|+|...|. +++..+.|+.|+...++.
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 4789999999999999999999999999999999999999999999999986543 445678999999887754
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc--------------
Q psy16366 131 SAVNIVLSADKNRVKLLKECSKLER-DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-------------- 195 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~-------------- 195 (568)
+....|+........+..+...+.. ...+ ....+.++..++..++.+.++.++..+|.+|||+.
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADP-DDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 6667777776666666666655543 2222 33455556666666777888899999999998864
Q ss_pred ---------------cCCCc-h--------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHH
Q psy16366 196 ---------------IYIPS-S--------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKK 251 (568)
Q Consensus 196 ---------------L~~eP-n--------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~ 251 (568)
|+||| | ||++||++|.+|||||||||+||++|||+|++++.|++..|.|||+.|.+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 88899 2 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC-C
Q psy16366 252 MYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP-Y 330 (568)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 330 (568)
+++++.+.+.++++++++++++++.+..+......+.+....+.+...++.... ....+.....+..+.|+.+. .
T Consensus 241 ~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~----~~~~~~~~~~~~~~~f~~~~~~ 316 (530)
T COG0488 241 QKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARL----AEERPVEEGKPLAFRFPPPGKR 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhh----hhcccccccccceeeccCCccc
Confidence 999999999999999999988888765543333322223333333333332110 00001111233445666665 3
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCC
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~ 410 (568)
.++++++++|++++|++++++++++||.|.+|+++||+||||+|||||||+|+|.+.|.+|.|.+....++||++|+..
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~- 395 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD- 395 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh-
Confidence 6788999999999996557899999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q psy16366 411 HLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~ 489 (568)
.++++.|+.+++.... ......++.+|++|+|++....+++..||||||.||+||++++.+|+||||||||||||++++
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 3457889999998765 334788999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 490 DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 490 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
++|.++|.+|.+|||+||||++|+..+|+++|++++ ++..+.|+|++|.+..
T Consensus 476 ~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 476 EALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 999999999999999999999999999999999999 8889999999998653
No 3
>KOG0927|consensus
Probab=100.00 E-value=1.3e-85 Score=683.97 Aligned_cols=492 Identities=40% Similarity=0.699 Sum_probs=422.3
Q ss_pred ccCCCCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch
Q psy16366 51 STVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD 130 (568)
Q Consensus 51 ~~~~~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~ 130 (568)
....+++.+++++|+|++|.|+++++|++|.+++|++|||+|+|||||||+|++|+|+..|+|.++++..+.+++.....
T Consensus 67 l~s~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 67 LFSHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccCcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHH-hccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc--------------
Q psy16366 131 SAVNIVL-SADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-------------- 195 (568)
Q Consensus 131 ~~~~~v~-~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~-------------- 195 (568)
++++.++ ..+..+..+....+.+.........+.+..+++++..++....+.++..+|.++||..
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 9888887 4555554443333344332122346778889999999999999999999999999875
Q ss_pred -----------------cCCCc-h--------HHHHHHhccCC-eEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 -----------------IYIPS-S--------RVHEIMRTWKK-TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 -----------------L~~eP-n--------~L~~~l~~~~~-tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+||| | ||++||..+.. ++|||||+++||+.|||+||+|+++++.+|.|||+.
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 77888 2 99999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHHHHHHHHhcccCCCCCchhhhcCC-ccceeeeecC
Q psy16366 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEK-AERQHSHKALKEQARKRVQKDDDDEPKELLEKP-REYIVKFRFP 326 (568)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 326 (568)
|..++.+....++++|+++++++.+++....+.-. .....+++.++.+...+++.. .+.+++ .+....|.||
T Consensus 307 y~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~------gL~ek~~~~k~l~~~f~ 380 (614)
T KOG0927|consen 307 YVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEAD------GLTEKVVGEKVLSFRFP 380 (614)
T ss_pred HhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhc------cccccccCCceEEEEcc
Confidence 99999999999999999999999988764221100 000111122222222222211 112222 2345688999
Q ss_pred CCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEec
Q psy16366 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406 (568)
Q Consensus 327 ~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q 406 (568)
.....++|++.+.||+|+|+++..+++++||.|+.++++++|||||||||||||+++|.+.|+.|.|..+...+++++.|
T Consensus 381 ~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q 460 (614)
T KOG0927|consen 381 EVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ 460 (614)
T ss_pred cccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh
Confidence 98888899999999999997666799999999999999999999999999999999999999999999988889999999
Q ss_pred CCCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
|..+++..+.++.++++..+. ...+.++.+|++|||.+.....|+++||+|||+||++|++++.+|++||||||||||
T Consensus 461 h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 998899999999999887654 456789999999999998888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 485 DIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 485 D~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
|+++++++.++|++|.++||+||||..+|.+++.++|+++||.+..++|++..|.+++.+.+..
T Consensus 541 Di~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~~ 604 (614)
T KOG0927|consen 541 DIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAK 604 (614)
T ss_pred CchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999887766543
No 4
>KOG0062|consensus
Probab=100.00 E-value=1.2e-82 Score=658.37 Aligned_cols=472 Identities=39% Similarity=0.605 Sum_probs=396.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHH
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 136 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v 136 (568)
+.||.+.+|+++||++.+|.+.+|++..|+||||||+||+|||||||+|+. .+++++.++||+..++......+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 789999999999999999999999999999999999999999999999996 45677888999999999999999
Q ss_pred HhccHHHHHHHHHHHHHhhccCCChHHHHHHHHH-HH-----------hccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 137 LSADKNRVKLLKECSKLERDESGDNQLRLTEVYD-EL-----------KSIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~-el-----------~~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.+|..+..++.++.++..- ..+.++++ -| ..+...+++-|.|..|+..-|.. |+|||
T Consensus 152 l~~D~~~~dfl~~e~~l~~~------~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAG------LTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred hhccHHHHHHHHhhhhhhcc------chHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 99999999888777655331 12333333 12 22344566667777776665554 88999
Q ss_pred -h--------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16366 201 -S--------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQI 271 (568)
Q Consensus 201 -n--------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (568)
| ||++||+.|+.|+|+||||+.||+.||+.|||+++.+|.+|.|||+.|.+.+.++..+++.+|+.+.+..
T Consensus 226 TNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R 305 (582)
T KOG0062|consen 226 TNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYR 305 (582)
T ss_pred cccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHH
Confidence 2 9999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEEeeEEEeCCCc-
Q psy16366 272 REMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLHDVTFGYPGGK- 349 (568)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~v~~~y~~~~- 349 (568)
++++.+.-+..-..++.....++-++..++ +.+.+...+..+.|.||+ ....++|++++.+|+|.|+.+.
T Consensus 306 ~h~q~fid~FrYna~ra~svqSRIk~L~kl--------~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y 377 (582)
T KOG0062|consen 306 AHLQVFIDKFRYNAARASSVQSRIKMLGKL--------PALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEY 377 (582)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHhccC--------CCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcch
Confidence 887765321110000000111121121111 111111223456788888 4456789999999999996666
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhc-CC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL 428 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-~~ 428 (568)
+++.++++.+...++++++|+||+||||++|++.|.+.|..|.+..+++.+|+|++|+..+++....+.++++...+ +.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999999999999999999999999999998877666666777776654 67
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q psy16366 429 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSH 508 (568)
Q Consensus 429 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 508 (568)
..+++++.|+.|||++....+++..||||||-||+||.+.+.+|++|+|||||||||.+++.+|.++|+.|+|+||+|||
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSH 537 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSH 537 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEEC
Confidence 88999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 509 DERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
|.+|+..+|.++|+++||+++.+.|++++|++....++..
T Consensus 538 d~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e~~~ 577 (582)
T KOG0062|consen 538 DEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAELRA 577 (582)
T ss_pred cHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988777754
No 5
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.1e-79 Score=690.27 Aligned_cols=480 Identities=40% Similarity=0.678 Sum_probs=371.8
Q ss_pred CCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc-ccCCCceEEEEeccccCCchhHH
Q psy16366 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 55 ~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~-~ip~~~~i~~~~qe~~~~~~~~~ 133 (568)
.++.+|+++|++++|+++++|+|+||+|.+|++||||||||||||||||+|+|... .+|.++.+.+++|++...+.+..
T Consensus 173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 56889999999999999999999999999999999999999999999999999643 26888999999998765555555
Q ss_pred HHHHhccHHHHHHHHHHH-------HHhhc--------------cCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcC
Q psy16366 134 NIVLSADKNRVKLLKECS-------KLERD--------------ESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLG 192 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~-------~l~~~--------------~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg 192 (568)
+.++..+..+..++.+.. .+... .......++.++++++..++.+.++.++..+|.++|
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 555544443333322211 11000 001113567788888888888999999999999999
Q ss_pred CCc-------------------------------cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceee
Q psy16366 193 FTT-------------------------------IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDII 232 (568)
Q Consensus 193 ~~~-------------------------------L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii 232 (568)
|.. |+||| .||.++++.++.|||+||||++|++.+||+|+
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 852 88899 29999999999999999999999999999999
Q ss_pred EEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhh
Q psy16366 233 HLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 312 (568)
Q Consensus 233 ~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (568)
+|++|++..|.|+|+.|...+.++++.+.++|+.+++++++++++.........+.+....+.+...++...
T Consensus 413 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~-------- 484 (718)
T PLN03073 413 HLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHV-------- 484 (718)
T ss_pred EEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhh--------
Confidence 999999999999999999988888888899999999888887654322111100000000000000111000
Q ss_pred hcCCccceeeeecCCCC-CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 313 LEKPREYIVKFRFPNPP-YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 313 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
...+.+....+.+|.+. ..++++|+++||++.|++++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G 564 (718)
T PLN03073 485 DAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG 564 (718)
T ss_pred hccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 00000112234444432 23457999999999995456799999999999999999999999999999999999999999
Q ss_pred EEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 392 ~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|.+..+.+|||++|++...+....+....+... .+...+.++.+|+.|+|......+++.+|||||||||+|||+|+.
T Consensus 565 ~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 565 TVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc
Confidence 9998888889999998633322222222222221 234566788999999998544445889999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
+|++|||||||||||+.++..+.+.|.++++|||+||||++++..+|+++|+|++|+++.+.|++++|++.+
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~ 716 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHh
Confidence 999999999999999999999999999988899999999999999999999999999988899999997764
No 6
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-76 Score=664.31 Aligned_cols=474 Identities=30% Similarity=0.483 Sum_probs=351.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+++.+|+|+||+|.+|+++|||||||||||||||+|+|...|..+. ..+.|+.|+......+.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 488999999999999999999999999999999999999999999999964332221 12345566432222334
Q ss_pred HHHHHhccHHHHHHHHHHH------------HHhh-cc---CCChHHHHHHHHHHHhc--------cCCCChHHHHHHHH
Q psy16366 133 VNIVLSADKNRVKLLKECS------------KLER-DE---SGDNQLRLTEVYDELKS--------IEADAAEPRARRIL 188 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~------------~l~~-~~---~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~~L 188 (568)
+..+.+.......+..+.. .+.. +. ......++..+++.+.. ++..+++++.|..|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 4444432211111110000 0000 00 01112233444443321 22346777777777
Q ss_pred HhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHH
Q psy16366 189 AGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ 255 (568)
Q Consensus 189 ~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~ 255 (568)
+..-+.. |+||| .||.++|+++++|||+||||++|++.+||+|++|++|+++.|.|+|+.|...+..
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~ 240 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRAT 240 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHHHHH
Confidence 6654443 88999 2999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCe
Q psy16366 256 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 335 (568)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (568)
....+.+.|+++++.+++++.+.........+.+....+.+...++... .+. .......+.|+.+...+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~ 312 (638)
T PRK10636 241 RLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELI---APA-----HVDNPFHFSFRAPESLPNPL 312 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcc---ccc-----ccCCceeEecCCCccCCCce
Confidence 7777888899999888876655322111111111111111111111110 000 00123456666655556789
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
|+++||++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+....++||++|++...+++.
T Consensus 313 l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 313 LKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCcc
Confidence 9999999999 677899999999999999999999999999999999999999999999876678999999754345566
Q ss_pred CCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 416 DTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 416 ~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
.++.+++.... ......++.+|+.|+|......++++.|||||||||+||++|+.+|+||||||||||||+.++..|.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 392 ESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471 (638)
T ss_pred chHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 67777654322 12345678899999997543445899999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 495 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 495 ~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
+|.++++|||+||||++++..+|+++|+|++|+++.+.|++++|.+.
T Consensus 472 ~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 472 ALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred HHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999999998899999999653
No 7
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-73 Score=642.54 Aligned_cols=470 Identities=25% Similarity=0.402 Sum_probs=344.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE--------EEeccccCCc-
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL--------YCEQEVEASD- 129 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~--------~~~qe~~~~~- 129 (568)
+|+++|++++|+++++|+|+||+|.+|+++|||||||||||||||+|+|...| ..+.+. ++.|......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCCEEEEeccCCCCCCC
Confidence 68999999999999999999999999999999999999999999999997433 333332 3333221111
Q ss_pred hhHHHHHHhccHHHHHHHHHHHHHhh--------------------cc---CCChHHHHHHHHHHHhc-----cCCCChH
Q psy16366 130 DSAVNIVLSADKNRVKLLKECSKLER--------------------DE---SGDNQLRLTEVYDELKS-----IEADAAE 181 (568)
Q Consensus 130 ~~~~~~v~~~~~~~~~l~~~~~~l~~--------------------~~---~~~~~~~l~~v~~el~~-----~~~~~~~ 181 (568)
....+.+................+.. +. ......++.++++.+.. +...+++
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgG 160 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGG 160 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHH
Confidence 11222221111000000000000000 00 00112233444444321 2334667
Q ss_pred HHHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 182 PRARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 182 ~~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
++.|..|+..-+.. |+||| .||.++|+++++|||+||||++|++.+||+|++|++|+++.|.|||+.
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHH
Confidence 77777666554433 88999 299999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCC
Q psy16366 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNP 328 (568)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (568)
|...++.+...+..+++.+++.++++..+......+. +.+. ..+.+...++...... + ........+.|+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~-~~r~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~ 312 (635)
T PRK11147 241 YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRN-EGRVRALKALRRERSE-R-----REVMGTAKMQVEEA 312 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhH-HHHHHHHHHhhhhhcc-c-----cccCCceeEEeCCC
Confidence 9988887777777788887777766554332211110 0011 1111111111100000 0 00012345566655
Q ss_pred CCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 329 PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 329 ~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
...+.++|+++||++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....|||++|++
T Consensus 313 ~~~~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 313 SRSGKIVFEMENVNYQI-DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred CCCCCceEEEeeeEEEE-CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc
Confidence 55567899999999999 56789999999999999999999999999999999999999999999986667899999986
Q ss_pred CCCCCCCCCHHHHHHHhc-CC--C--HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMKLF-NL--P--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~~-~~--~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
..+++..|+.+++.... .. . ...++.+|+.|++......+++.+|||||||||+||++|+.+|+||||||||||
T Consensus 392 -~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 392 -AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred -cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 35788889999875422 11 1 345778899999975444458899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEE-CCeEEEEcCCHHHHHH
Q psy16366 484 LDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALE-KKNIRKFNGDFDDYRE 540 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~-~g~i~~~~g~~~~~~~ 540 (568)
||+.++..|.++|.++++|||+||||++++..+|+++|+|+ +|+++.|.|+|++|.+
T Consensus 471 LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 471 LDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999999999999998 8999999999999964
No 8
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-70 Score=601.37 Aligned_cols=474 Identities=24% Similarity=0.410 Sum_probs=337.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCc-hh
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASD-DS 131 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~-~~ 131 (568)
+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||||+|+|...|..+. ..+.++.|+..... .+
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 488999999999889999999999999999999999999999999999974332221 23556667643322 23
Q ss_pred HHHHHHhccHHHHHHHHHH---------------------HHHhhccCCChHHHHHHHHHHHh--------ccCCCChHH
Q psy16366 132 AVNIVLSADKNRVKLLKEC---------------------SKLERDESGDNQLRLTEVYDELK--------SIEADAAEP 182 (568)
Q Consensus 132 ~~~~v~~~~~~~~~l~~~~---------------------~~l~~~~~~~~~~~l~~v~~el~--------~~~~~~~~~ 182 (568)
..+.+.............. ..+..........++.++++.+. .+...+.++
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 3232221110000000000 00000000011223334444321 123457778
Q ss_pred HHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 183 RARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 183 ~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+.|..|+..-+.. |+||| .||.+++.+++.|||+||||++++..+||+|++|++|+++.|.|+|+.|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 8887776554433 88999 2888999888999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC
Q psy16366 250 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP 329 (568)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (568)
..+++.......+++++++++++++............+.+....+.+...... ...... .......+.++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~ 313 (530)
T PRK15064 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIK---LEEVKP----SSRQNPFIRFEQDK 313 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhcc---ccccCC----ccccCceeeCCCCC
Confidence 87776655556666777776666554322111000000000000000000000 000000 00000112233222
Q ss_pred CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCC
Q psy16366 330 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 330 ~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~ 409 (568)
....++|+++|+++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+..+.++||++|++.
T Consensus 314 ~~~~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~ 392 (530)
T PRK15064 314 KLHRNALEVENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392 (530)
T ss_pred CCCCceEEEEeeEEee-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccc
Confidence 2345789999999999 567899999999999999999999999999999999999999999999988889999999875
Q ss_pred CCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 410 EHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
..++...|+.+++.... ....+.++.+|+.+++......+++.+|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 393 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 44666788888765322 1234567889999999533334588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 488 ~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++..+.+.|.++++|||+||||++++..+|+++++|.+|+++.+.|+++++.+
T Consensus 473 ~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 473 SIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999988999999999999999999999999999878899888754
No 9
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.1e-69 Score=599.24 Aligned_cols=478 Identities=25% Similarity=0.399 Sum_probs=340.4
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCc-h
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASD-D 130 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~-~ 130 (568)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|...|..+. ..+.|+.|+....+ .
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 689999999998 788999999999999999999999999999999999975432222 34678888764432 2
Q ss_pred hHHHHHHhccHHHHHHH---H---------------------HH-HHHhhccCCChHHHHHHHHHHHh------ccCCCC
Q psy16366 131 SAVNIVLSADKNRVKLL---K---------------------EC-SKLERDESGDNQLRLTEVYDELK------SIEADA 179 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~---~---------------------~~-~~l~~~~~~~~~~~l~~v~~el~------~~~~~~ 179 (568)
+..+.+........... . +. +.+......+...++.++++.+. .+...+
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LS 163 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLS 163 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcC
Confidence 33333321100000000 0 00 00000000001122333333321 123356
Q ss_pred hHHHHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCCh
Q psy16366 180 AEPRARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246 (568)
Q Consensus 180 ~~~~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y 246 (568)
.+++.|..++..-+.. |+||| .||.+++++++.|||+||||++++..+||+|++|++|++..|.|+|
T Consensus 164 gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 7777777776654433 89999 2999999998899999999999999999999999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecC
Q psy16366 247 TLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP 326 (568)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (568)
+.|.++.......+..++++.++++++............ ..+. ..+.....+... ..+. .+ +....+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~----~~-~~~~~~~~~ 313 (552)
T TIGR03719 244 SSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAKS-KARLARYEELLS---QEFQ----KR-NETAEIYIP 313 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHhhhh---hccc----cc-CCCceeecC
Confidence 999887665555555566666555544333221100000 0000 000000000000 0000 00 001122333
Q ss_pred CCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEec
Q psy16366 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406 (568)
Q Consensus 327 ~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q 406 (568)
.+.....++++++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....|||++|
T Consensus 314 ~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q 392 (552)
T TIGR03719 314 PGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ 392 (552)
T ss_pred CCCCCCCeEEEEeeEEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeC
Confidence 3322346799999999999 567899999999999999999999999999999999999999999999866668999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC--HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
++. .+++..|+.+++.... +.. ...++.+++.+++......+++.+|||||||||+||++|+.+|++|||||||
T Consensus 393 ~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 393 SRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred Ccc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 862 3677889999875422 111 2345678999999754334578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC-CeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 482 NNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK-KNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~-g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
+|||+.++..|.++|.++++|||+||||++++..+|+++|+|++ |++..+.|++++|.+...+.+++
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 539 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGE 539 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988999999999999999999999997 58888999999998776665554
No 10
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-69 Score=599.74 Aligned_cols=473 Identities=23% Similarity=0.382 Sum_probs=340.2
Q ss_pred cceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCc-
Q psy16366 58 VDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASD- 129 (568)
Q Consensus 58 ~~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~- 129 (568)
.+|+++|++++|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|...|..+. ..+.|+.|+....+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 3799999999998 789999999999999999999999999999999999975443222 34678888764433
Q ss_pred hhHHHHHHhccHHHHH----H-----------------HHHHHHHh----hccCCChHHHHHHHHHHHh------ccCCC
Q psy16366 130 DSAVNIVLSADKNRVK----L-----------------LKECSKLE----RDESGDNQLRLTEVYDELK------SIEAD 178 (568)
Q Consensus 130 ~~~~~~v~~~~~~~~~----l-----------------~~~~~~l~----~~~~~~~~~~l~~v~~el~------~~~~~ 178 (568)
.+..+.+......... + +.....+. .....+...++.++++.+. .++..
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~L 164 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKL 164 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhc
Confidence 2333332211000000 0 00000000 0000011223333433332 12345
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
+++++.+..|+..-+.. |+||| .||.++++.++.|||+||||++++..+||+|++|++|+++.|.|+
T Consensus 165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~ 244 (556)
T PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN 244 (556)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCC
Confidence 77788887776654443 88999 299999999989999999999999999999999999999889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeec
Q psy16366 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 325 (568)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (568)
|+.|.+.+........+.+++++++++++........... ..+ ...+.+...+.... .+.. .+ ....+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~---~~~~---~~--~~~~~~~ 314 (556)
T PRK11819 245 YSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QAK-SKARLARYEELLSE---EYQK---RN--ETNEIFI 314 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHH-HHHHHHHHHHhhcc---cccc---cC--CCceeec
Confidence 9999887766555556666666666554443322110000 000 00000000011000 0000 00 0112223
Q ss_pred CCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEe
Q psy16366 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 326 ~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~ 405 (568)
+......+++|+++||++.| +++++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+....+|||++
T Consensus 315 ~~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~ 393 (556)
T PRK11819 315 PPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVD 393 (556)
T ss_pred CCCCCCCCeEEEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEe
Confidence 33322345799999999999 56789999999999999999999999999999999999999999999986666899999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
|++ ..+++..|+.+++.... +. ....++.+|+.+++......+++.+|||||||||+|||+|+.+|+|||||||
T Consensus 394 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 394 QSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred Cch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 986 24677889999875321 11 2334567899999975333457899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC-CeEEEEcCCHHHHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK-KNIRKFNGDFDDYREKL 542 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~-g~i~~~~g~~~~~~~~~ 542 (568)
|+|||+.++..|.++|.++.+|||+||||++++..+|+++++|++ |++..+.|++++|.+..
T Consensus 473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999999999999988999999999999999999999996 78888899999997654
No 11
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.6e-63 Score=546.70 Aligned_cols=414 Identities=22% Similarity=0.329 Sum_probs=290.5
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEE----------eccccCC-
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC----------EQEVEAS- 128 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~----------~qe~~~~- 128 (568)
|+++|++++|+++++|+|+||+|.+|+++||+|||||||||||++|+|....-|..+.+.+. .|+....
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998889999999999999999999999999999999999963101344444432 1110000
Q ss_pred -------------------chhH-------HHHHHhccHHHH---HHHHHHHH-HhhccCC--ChHHHHHHHHHHHh---
Q psy16366 129 -------------------DDSA-------VNIVLSADKNRV---KLLKECSK-LERDESG--DNQLRLTEVYDELK--- 173 (568)
Q Consensus 129 -------------------~~~~-------~~~v~~~~~~~~---~l~~~~~~-l~~~~~~--~~~~~l~~v~~el~--- 173 (568)
.... +..+.+...... ...+.... +...... ....++.++.+.+.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 0000 000011000000 00000000 0000000 01123333443321
Q ss_pred ----ccCCCChHHHHHHHHHhcCCCc----cCCCch---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceee
Q psy16366 174 ----SIEADAAEPRARRILAGLGFTT----IYIPSS---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDII 232 (568)
Q Consensus 174 ----~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii 232 (568)
.+...++++++|..++..-+.. |+|||. |+ .++.++++.|||+||||++++..+||+|+
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 2344677788887776654433 889991 54 44444557899999999999999999999
Q ss_pred EEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhh
Q psy16366 233 HLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 312 (568)
Q Consensus 233 ~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (568)
+|++|++.. .|+++.+...... .+. . .
T Consensus 241 ~l~~G~i~~-~g~~~~~~~~~~~-----------------~~~---------------~---------~----------- 267 (520)
T TIGR03269 241 WLENGEIKE-EGTPDEVVAVFME-----------------GVS---------------E---------V----------- 267 (520)
T ss_pred EEeCCEEee-ecCHHHHHHHHHh-----------------hch---------------h---------h-----------
Confidence 999999875 5777765321000 000 0 0
Q ss_pred hcCCccceeeeecCCCCCCCCCeEEEEeeEEEeCC----CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 313 LEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~----~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
..+ .+...+.++|+++||+++|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|
T Consensus 268 -~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p 336 (520)
T TIGR03269 268 -EKE----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP 336 (520)
T ss_pred -ccc----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 000 000113468999999999942 25799999999999999999999999999999999999999
Q ss_pred CccEEEEC-C-----------------CeeEEEEecCCCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHHhCCCCC
Q psy16366 389 NKGELRKS-P-----------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGLPS 444 (568)
Q Consensus 389 ~~G~i~~~-~-----------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~--~~~----~~~~~~~L~~~~l~~ 444 (568)
++|+|.++ . +.+++|++|++. +++..|+.+++.... ..+ ...+.++|+.++|..
T Consensus 337 ~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 337 TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999873 1 135899999863 777889998875321 222 134567899999975
Q ss_pred c----cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhh
Q psy16366 445 Y----AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRET 516 (568)
Q Consensus 445 ~----~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~ 516 (568)
. ...+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|.+ ++.|||+||||++++..+
T Consensus 415 ~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 494 (520)
T TIGR03269 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV 494 (520)
T ss_pred ccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence 2 23457899999999999999999999999999999999999999999999854 467999999999999999
Q ss_pred CceEEEEECCeEEEEcCCHHHHHH
Q psy16366 517 DCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 517 ~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+++++|++|+++ ..|+.+++.+
T Consensus 495 ~d~i~~l~~G~i~-~~g~~~~~~~ 517 (520)
T TIGR03269 495 CDRAALMRDGKIV-KIGDPEEIVE 517 (520)
T ss_pred CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999986 4577666543
No 12
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.9e-64 Score=533.27 Aligned_cols=439 Identities=20% Similarity=0.279 Sum_probs=304.8
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC--CCceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP--SSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip--~~~~i~~~~qe~~~~~~~~ 132 (568)
.++|+|++++|... .+++|+||+|.+||.+||||+|||||||++++|.|...+-+ ..+.+.+.++++.......
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 78999999998532 59999999999999999999999999999999999643211 2456666665543322211
Q ss_pred H--------HHHHhccHHH----HHHHHHHHHHhhccC-CCh---HHHHHHHHHHHh---------ccCCCChHHHHHHH
Q psy16366 133 V--------NIVLSADKNR----VKLLKECSKLERDES-GDN---QLRLTEVYDELK---------SIEADAAEPRARRI 187 (568)
Q Consensus 133 ~--------~~v~~~~~~~----~~l~~~~~~l~~~~~-~~~---~~~l~~v~~el~---------~~~~~~~~~~~~~~ 187 (568)
. ..++|..... ..+-.+..+...... ... ..+..++++++. -....++++++|.+
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 1 1111111110 011111111111000 001 222222333221 11123666777776
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
++.--... ++|||. .|.++.++.+.++|+||||++.+.++||||++|++|+++..+..-+.|.
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 65432222 889992 5666777889999999999999999999999999999998755444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCC
Q psy16366 251 KMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPY 330 (568)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (568)
+.... | ++.. .. ..|. +.. .........++ .
T Consensus 245 ~p~hp--------Y----------------------------T~~L----l~----a~p~-~~~-~~~~~~~~~~~---~ 275 (539)
T COG1123 245 NPQHP--------Y----------------------------TRGL----LA----AVPR-LGD-EKIIRLPRRGP---L 275 (539)
T ss_pred ccCCc--------c----------------------------cHHH----Hh----hCCC-ccc-ccccccccccc---c
Confidence 21100 0 0000 00 0000 000 00000000000 1
Q ss_pred CCCCeEEEEeeEEEeCC------C----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---
Q psy16366 331 LPPPVLGLHDVTFGYPG------G----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--- 397 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~------~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--- 397 (568)
...|+++++||++.|.. . ..+++||||+|.+||++||||++|||||||.|+|+|+++|++|.|.+..
T Consensus 276 ~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 276 RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 15789999999999952 1 2589999999999999999999999999999999999999999998643
Q ss_pred ----------CeeEEEEecCCCCCCCCCCCHHHHHHHhcC----CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHH
Q psy16366 398 ----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQK 459 (568)
Q Consensus 398 ----------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 459 (568)
+.++.++||+|...+++.+|+.+.+..... .. .+.+.++|+.+||+.....++|++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 247899999999999999999887754321 11 134667799999997544568899999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEc---
Q psy16366 460 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFN--- 532 (568)
Q Consensus 460 qRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~--- 532 (568)
|||+|||||+.+|++||+||||+.||+..+..+.++|.+ ++.|.||||||+.++..+||+|++|.+|++++..
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999988888865 4789999999999999999999999999998752
Q ss_pred ----CCHHHHHHHHHHHH
Q psy16366 533 ----GDFDDYREKLLTSL 546 (568)
Q Consensus 533 ----g~~~~~~~~~~~~~ 546 (568)
.+.++|.+.++.++
T Consensus 516 ~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 516 KVFENPQHPYTRKLLAAV 533 (539)
T ss_pred HHhcCCCChHHHHHHHhc
Confidence 23455666665554
No 13
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-63 Score=546.94 Aligned_cols=422 Identities=20% Similarity=0.280 Sum_probs=292.2
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCCchh
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDS 131 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~~~~ 131 (568)
+|+++|++++|++ +++|+++||+|.+||++||+||||||||||||+|+|...|. |..+.+.+.++++......
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 6999999999963 57999999999999999999999999999999999975331 1345555544443221110
Q ss_pred H--------HHHHHhccHH-HHHHHHHHHHHh---h----ccCCChHHHHHHHHHHHh----------ccCCCChHHHHH
Q psy16366 132 A--------VNIVLSADKN-RVKLLKECSKLE---R----DESGDNQLRLTEVYDELK----------SIEADAAEPRAR 185 (568)
Q Consensus 132 ~--------~~~v~~~~~~-~~~l~~~~~~l~---~----~~~~~~~~~l~~v~~el~----------~~~~~~~~~~~~ 185 (568)
. +..+.+.... ..........+. . ........++.++.+.+. .+...++++++|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 0 1111111100 000000000000 0 000011233344444332 123457778888
Q ss_pred HHHHhcCCCc----cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 186 RILAGLGFTT----IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 186 ~~L~~lg~~~----L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
..++..-... |+|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++..++++ +.
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~-~~ 243 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA-AT 243 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH-HH
Confidence 7776654433 889992 55555543 478999999999999999999999999999876443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCC
Q psy16366 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNP 328 (568)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (568)
+...... .. .+. ... . .+ .. .+ .+.
T Consensus 244 ~~~~~~~---~~----------~~~------------------~~~-----~-------~~-~~--~~--------~~~- 268 (529)
T PRK15134 244 LFSAPTH---PY----------TQK------------------LLN-----S-------EP-SG--DP--------VPL- 268 (529)
T ss_pred HhhCCCC---HH----------HHH------------------HHH-----h-------Cc-cc--cc--------ccc-
Confidence 2110000 00 000 000 0 00 00 00 000
Q ss_pred CCCCCCeEEEEeeEEEeCC----------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-
Q psy16366 329 PYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP- 397 (568)
Q Consensus 329 ~~~~~~~l~~~~v~~~y~~----------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~- 397 (568)
...++++|+++|+++.|+. ++++|+|+||+|++|++++|+||||||||||+|+|+|++ |++|+|.++.
T Consensus 269 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~ 347 (529)
T PRK15134 269 PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQ 347 (529)
T ss_pred CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCE
Confidence 1124568999999999941 357999999999999999999999999999999999998 4899998643
Q ss_pred -------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC--CC----HHHHHHHHHhCCCCCccccCCCCCCC
Q psy16366 398 -------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN--LP----YEKSRRQLGMFGLPSYAHTIPIRDLS 455 (568)
Q Consensus 398 -------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LS 455 (568)
+.+++|++|++...+++..|+.+++... .. .+ .+.+.++|+.+++......+++.+||
T Consensus 348 ~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 348 PLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred EccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 2358999999744577888998877532 11 22 23467889999997422345789999
Q ss_pred HhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 456 gGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
|||||||+|||||+.+|++|||||||+|||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++ .
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~ 506 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-E 506 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-E
Confidence 99999999999999999999999999999999999999999753 679999999999999999999999999986 4
Q ss_pred cCCHHHH
Q psy16366 532 NGDFDDY 538 (568)
Q Consensus 532 ~g~~~~~ 538 (568)
.|+.+++
T Consensus 507 ~~~~~~~ 513 (529)
T PRK15134 507 QGDCERV 513 (529)
T ss_pred EcCHHHH
Confidence 5666655
No 14
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-62 Score=541.14 Aligned_cols=420 Identities=19% Similarity=0.247 Sum_probs=290.5
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|...|.|..+.+.+.+.++.......
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 369999999999988999999999999999999999999999999999996432123555555444332111000
Q ss_pred HHHHHhccHHHHHHHHHHHHHhh-cc-C--C--C---hHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc-
Q psy16366 133 VNIVLSADKNRVKLLKECSKLER-DE-S--G--D---NQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~-~~-~--~--~---~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~- 195 (568)
+..+.+.. ....-+...+.+.. .. . . . ...++.++++.+.. +...+.++++|..++..-+..
T Consensus 84 i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 84 IAIIHQEL-ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred eEEEEecc-ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 01111110 00000000000000 00 0 0 0 01233444444321 233577788887776554433
Q ss_pred ---cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHH
Q psy16366 196 ---IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~ 260 (568)
|+|||. ++.+++.+ .+.|||+||||++++..+||+|++|++|+++.+ |+.+.+... .
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~~~------~- 234 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT-RPAAGMTED------D- 234 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee-cccccCCHH------H-
Confidence 889992 44444433 378999999999999999999999999998764 333222100 0
Q ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEE
Q psy16366 261 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLH 339 (568)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 339 (568)
.++.+. +. ..... +|. +...+.++|+++
T Consensus 235 ---------~~~~~~--~~----------------------------~~~~~------------~~~~~~~~~~~~l~~~ 263 (506)
T PRK13549 235 ---------IITMMV--GR----------------------------ELTAL------------YPREPHTIGEVILEVR 263 (506)
T ss_pred ---------HHHHhh--Cc----------------------------Ccccc------------ccccccCCCCceEEEe
Confidence 000000 00 00000 000 011235689999
Q ss_pred eeEEEeC--CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECC------------CeeEEEE
Q psy16366 340 DVTFGYP--GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSP------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~--~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~------------~~~i~~~ 404 (568)
|+++.|+ +++++|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++. +..++|+
T Consensus 264 ~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 264 NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred cCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 9999994 24579999999999999999999999999999999999998 5999998643 1348999
Q ss_pred ecCCC-CCCCCCCCHHHHHHHh----c-C---CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 405 DQHSG-EHLFPDDTPCEYLMKL----F-N---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 405 ~q~~~-~~l~~~~~~~e~l~~~----~-~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++. ..+++..|+.+++... + . .. .+.+.++++.+++......+++.+|||||||||+|||||+.+
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 99863 2467778988876421 1 1 12 134678899999963233457899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|.+|+++ ..++.+++
T Consensus 424 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 424 PKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence 9999999999999999999998887654 679999999999999999999999999986 45566655
No 15
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-61 Score=541.98 Aligned_cols=446 Identities=17% Similarity=0.185 Sum_probs=290.4
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc--------
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE-------- 126 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~-------- 126 (568)
+|+++|++++|++ .++|+|+||+|.+||++||||+||||||||+++|+|... |..+.+.+.+..+.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccccccc
Confidence 6999999999962 479999999999999999999999999999999999743 23344433222110
Q ss_pred CC--chh--------HHHHHHhccH-HH---HHHHHHHHH-Hh---hccCCChHHHHHHHHHHHh----------ccCCC
Q psy16366 127 AS--DDS--------AVNIVLSADK-NR---VKLLKECSK-LE---RDESGDNQLRLTEVYDELK----------SIEAD 178 (568)
Q Consensus 127 ~~--~~~--------~~~~v~~~~~-~~---~~l~~~~~~-l~---~~~~~~~~~~l~~v~~el~----------~~~~~ 178 (568)
.. ... .+..+++... .. ....+.... +. .....+...+..++++.+. .+...
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 00 000 0011111100 00 000000000 00 0000001123333333332 12335
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++++|..++..-+.. ++|||. .|.++.++.+.|||+||||++++..+||||++|++|+++.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 77778887776543333 889992 2333333458899999999999999999999999999985
Q ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCcccee
Q psy16366 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 321 (568)
Q Consensus 242 ~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (568)
.|+++.+..... ..|. +.+.......... ... ... ...+.... ..+. ...
T Consensus 250 -~g~~~~~~~~~~-------~~~~------~~l~~~~~~~~~~-----------~~~-~~~--~~~~~~~~-~~~~-~~~ 299 (623)
T PRK10261 250 -TGSVEQIFHAPQ-------HPYT------RALLAAVPQLGAM-----------KGL-DYP--RRFPLISL-EHPA-KQE 299 (623)
T ss_pred -cCCHHHhhcCCC-------Chhh------hhhhhccCccccc-----------ccc-cCC--cccccccc-cccc-ccC
Confidence 577665432100 0000 0000000000000 000 000 00000000 0000 000
Q ss_pred eeecCCCCCCCCCeEEEEeeEEEeCC----------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 322 KFRFPNPPYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~v~~~y~~----------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
...++.......++|+++||++.|+. ...+|+||||+|.+|++++|+||||||||||+++|+|+++|++|
T Consensus 300 ~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G 379 (623)
T PRK10261 300 PPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG 379 (623)
T ss_pred cccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc
Confidence 00011111123579999999999941 24699999999999999999999999999999999999999999
Q ss_pred EEEECC--------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCccccC
Q psy16366 392 ELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSYAHTI 449 (568)
Q Consensus 392 ~i~~~~--------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~~~~~ 449 (568)
+|.++. +.+|+|++|++...+++.+|+.+++... .+. .. +.+.++|+.+||......+
T Consensus 380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 459 (623)
T PRK10261 380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459 (623)
T ss_pred EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC
Confidence 998643 2369999999755688888998876532 222 21 3467889999996333345
Q ss_pred CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEEC
Q psy16366 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 450 ~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.+ ++.|||+||||++++..+||++++|.+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999999999854 467999999999999999999999999
Q ss_pred CeEEEEcCCHHH
Q psy16366 526 KNIRKFNGDFDD 537 (568)
Q Consensus 526 g~i~~~~g~~~~ 537 (568)
|+++. .|+.++
T Consensus 540 G~iv~-~g~~~~ 550 (623)
T PRK10261 540 GQIVE-IGPRRA 550 (623)
T ss_pred CEEEE-ecCHHH
Confidence 99975 455444
No 16
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-62 Score=536.62 Aligned_cols=412 Identities=17% Similarity=0.239 Sum_probs=286.8
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.+.++.......
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCC
Confidence 36999999999998899999999999999999999999999999999999743 33445544443332111100
Q ss_pred HHHHHhccHH--HHHHHHHHHHHhhcc----CC----C---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcC
Q psy16366 133 VNIVLSADKN--RVKLLKECSKLERDE----SG----D---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 133 ~~~v~~~~~~--~~~l~~~~~~l~~~~----~~----~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg 192 (568)
+..+.+.... .....+.. .+.... .+ . ...+..++.+.+. .+...+.++++|..++..-
T Consensus 82 i~~v~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred eEEEeecccccCCCcHHHHh-hhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 0111110000 00000000 000000 00 0 1123333443332 1234577788887776544
Q ss_pred CCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHH
Q psy16366 193 FTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQK 256 (568)
Q Consensus 193 ~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~ 256 (568)
+.. |+|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++. +.|+++.+...
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~---- 235 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVSND---- 235 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCCHH----
Confidence 333 889992 44444433 3789999999999999999999999999996 45666544210
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCe
Q psy16366 257 RKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPV 335 (568)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (568)
+. ...+ .+.. . ....... .+. .....+++
T Consensus 236 --~~----------~~~~--~~~~--------------------~----~~~~~~~------------~~~~~~~~~~~~ 265 (510)
T PRK09700 236 --DI----------VRLM--VGRE--------------------L----QNRFNAM------------KENVSNLAHETV 265 (510)
T ss_pred --HH----------HHHh--cCCC--------------------c----ccccccc------------ccccccCCCCcE
Confidence 00 0000 0000 0 0000000 000 01123568
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++|+++.| + .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.. +..++|
T Consensus 266 l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 266 FEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 9999999987 3 389999999999999999999999999999999999999999998743 135899
Q ss_pred EecCCC-CCCCCCCCHHHHHHHhc-----------CC-C----HHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHH
Q psy16366 404 FDQHSG-EHLFPDDTPCEYLMKLF-----------NL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 404 ~~q~~~-~~l~~~~~~~e~l~~~~-----------~~-~----~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA 465 (568)
++|++. ..+++..|+.+++.... +. . ...+.++|+.+++. ... .+++.+|||||||||+||
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQKVLIS 421 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-cCccccCChHHHHHHHHH
Confidence 999852 35778889998764311 11 1 12356789999996 444 458899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
|+|+.+|+||||||||+|||+.+...+.++|+++ +.|||+||||++++..+||++++|.+|+++..
T Consensus 422 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999998765 67999999999999999999999999998754
No 17
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-61 Score=533.07 Aligned_cols=411 Identities=19% Similarity=0.261 Sum_probs=284.0
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++++|+|+||+|.+|+++||+||||||||||+++|+|...|.|..+.+.+.++++....... +.
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 7899999999888999999999999999999999999999999999996432123555554443332111000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhh-cc-CC---C---hHHHHHHHHHHHhc--------cCCCChHHHHHHHHHhcCCCc-
Q psy16366 135 IVLSADKN--RVKLLKECSKLER-DE-SG---D---NQLRLTEVYDELKS--------IEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~-~~-~~---~---~~~~l~~v~~el~~--------~~~~~~~~~~~~~L~~lg~~~- 195 (568)
.+.+.... .....+.. .+.. .. .. . ...+..++.+.+.. +...++++++|..++..-+..
T Consensus 82 ~v~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 82 IIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEeeccccCCCCcHHHHH-HhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 11111000 00000000 0000 00 00 0 01233334443321 234577888887776543332
Q ss_pred ---cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHH
Q psy16366 196 ---IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~ 260 (568)
|+|||. ++.++++ +.+.|||+||||++++..+||+|++|++|+++.+... +.+... .
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~------~- 232 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDM-STMSED------D- 232 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCc-ccCCHH------H-
Confidence 889992 5555544 3478999999999999999999999999999865332 211100 0
Q ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEE
Q psy16366 261 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLH 339 (568)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 339 (568)
....+. + . ..... ++. +...++++|+++
T Consensus 233 ---------~~~~~~--~------------------------~----~~~~~------------~~~~~~~~~~~~l~~~ 261 (500)
T TIGR02633 233 ---------IITMMV--G------------------------R----EITSL------------YPHEPHEIGDVILEAR 261 (500)
T ss_pred ---------HHHHHh--C------------------------c----ccccc------------ccccccCCCCceEEEe
Confidence 000000 0 0 00000 000 011234689999
Q ss_pred eeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECC------------CeeEEEE
Q psy16366 340 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSP------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~------------~~~i~~~ 404 (568)
|+++.|++ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++| ++|+|.++. +.+++|+
T Consensus 262 ~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 262 NLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred CCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 99999932 35799999999999999999999999999999999999995 899998643 2358999
Q ss_pred ecCCC-CCCCCCCCHHHHHHHh----c----CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 405 DQHSG-EHLFPDDTPCEYLMKL----F----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 405 ~q~~~-~~l~~~~~~~e~l~~~----~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++. ..+++..|+.+++... . ... ...+.++|+.+++......+++.+|||||||||+|||||+.+
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 99863 2467788888876321 1 112 134678899999974333457899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 422 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 422 PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999988877654 6799999999999999999999999999864
No 18
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-61 Score=530.63 Aligned_cols=421 Identities=17% Similarity=0.206 Sum_probs=287.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV----- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~----- 133 (568)
+|+++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|... |..+.+.+.+.++........
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCE
Confidence 6999999999998899999999999999999999999999999999999643 334444443333221110000
Q ss_pred HHHHhccHHHHHHHHHHHHHhh-ccC-CChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 134 NIVLSADKNRVKLLKECSKLER-DES-GDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~-~~~-~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
..+.+.. ....-+...+.+.. ... .....++.++.+.+. .+...+.++++|..++..-... |+|||
T Consensus 89 ~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 89 YLVPQEP-LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred EEEeccC-ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 0000000 00000000000000 000 001122333333322 1234577788887776543332 88999
Q ss_pred h---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy16366 201 S---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQE 268 (568)
Q Consensus 201 n---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~ 268 (568)
. ++.+++++ .+.|||+||||++++..+||+|++|++|+++. .|+++.+..... .
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~~~------~------- 233 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLSTDDI------I------- 233 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcCHHHH------H-------
Confidence 2 55555543 37899999999999999999999999999975 678776542100 0
Q ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC---CCCCCCCeEEEEeeEEEe
Q psy16366 269 KQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN---PPYLPPPVLGLHDVTFGY 345 (568)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~v~~~y 345 (568)
..+...... . ... .. .. ..+.+|. +....+++|+++|+++
T Consensus 234 ---~~~~~~~~~-~-----------------~~~-----~~-------~~--~~~~~~~~~~~~~~~~~~l~~~~l~~-- 276 (510)
T PRK15439 234 ---QAITPAARE-K-----------------SLS-----AS-------QK--LWLELPGNRRQQAAGAPVLTVEDLTG-- 276 (510)
T ss_pred ---HHHhCcccc-c-----------------ccc-----cc-------cc--ccccccccccccCCCCceEEEeCCCC--
Confidence 000000000 0 000 00 00 0001111 1112456899999983
Q ss_pred CCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeEEEEecCCC-CCC
Q psy16366 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRIGKFDQHSG-EHL 412 (568)
Q Consensus 346 ~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i~~~~q~~~-~~l 412 (568)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++.. ..|+|++|++. ..+
T Consensus 277 ----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 277 ----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGL 352 (510)
T ss_pred ----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCc
Confidence 2599999999999999999999999999999999999999999986531 35899999852 346
Q ss_pred CCCCCHHHHHHHh----cC--C-C---HHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 413 FPDDTPCEYLMKL----FN--L-P---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 413 ~~~~~~~e~l~~~----~~--~-~---~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
++..|+.+++... .. . . .+.+.++|+.++|. ...+ +++.+|||||||||+|||||+.+|+||||||||
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCcc-CccccCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 7778887775321 01 1 1 12466789999997 4444 578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||+.++..+.+.|+++ +.|||+||||++++..+||++|+|++|+++. .++.+++.
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~-~~~~~~~~ 491 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG-ALTGAAIN 491 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEccccCC
Confidence 999999999999998764 6799999999999999999999999999974 45555543
No 19
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.1e-61 Score=528.51 Aligned_cols=418 Identities=17% Similarity=0.226 Sum_probs=285.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh----HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS----AVN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~----~~~ 134 (568)
+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.++++...... .+.
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHHhc
Confidence 6999999999988889999999999999999999999999999999999643 3445555444433211111 011
Q ss_pred HHHhccHHHHHHHHH------HHHHhhccCC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----c
Q psy16366 135 IVLSADKNRVKLLKE------CSKLERDESG-DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----I 196 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~------~~~l~~~~~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L 196 (568)
.+.+... ..++.. ......+... ....+..++.+.+. .+...++++++|..++..-+.. |
T Consensus 81 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 81 DEWQRNN--TDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eeccCcc--hhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1221110 000000 0000000000 11223344444331 2345678888887776554432 8
Q ss_pred CCCc---------hHHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHH
Q psy16366 197 YIPS---------SRVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 264 (568)
Q Consensus 197 ~~eP---------n~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~ 264 (568)
+||| .++.++++++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.+....
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~~~~----------- 226 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET-GEREEILQQA----------- 226 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe-CCHHHHhcch-----------
Confidence 8999 2555555544 68999999999999999999999999999764 5554432100
Q ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEeeEEE
Q psy16366 265 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFG 344 (568)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 344 (568)
.+..+.. ...... ...+ . .... ..+.......++|+++|+++.
T Consensus 227 -----~~~~~~~---------------------~~~~~~--~~~~-~----~~~~----~~~~~~~~~~~~l~~~~l~~~ 269 (490)
T PRK10938 227 -----LVAQLAH---------------------SEQLEG--VQLP-E----PDEP----SARHALPANEPRIVLNNGVVS 269 (490)
T ss_pred -----hhhhhhh---------------------hhccCc--cccC-c----cccc----ccccccCCCCceEEEeceEEE
Confidence 0000000 000000 0000 0 0000 000001124578999999999
Q ss_pred eCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECC------------CeeEEEEecCCCCC
Q psy16366 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSP------------RLRIGKFDQHSGEH 411 (568)
Q Consensus 345 y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~------------~~~i~~~~q~~~~~ 411 (568)
| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+.+| ++|+|.++. +..++|++|++...
T Consensus 270 ~-~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 270 Y-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred E-CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 9 567799999999999999999999999999999999998876 699997643 23589999986422
Q ss_pred CCCCCCHHHHHHHh-c---C----CC---HHHHHHHHHhCCCCC-ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 412 LFPDDTPCEYLMKL-F---N----LP---YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 412 l~~~~~~~e~l~~~-~---~----~~---~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.....++.+++... . . .. .+.+.++++.++|.. ..+ +++.+|||||||||+|||||+.+|+||||||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-APFHSLSWGQQRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 22234565554321 1 1 11 235678899999986 444 5889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---C-ceEEEEecchHHHHh-hCceEEEEECCeEEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY---Q-GGVILVSHDERLIRE-TDCELWALEKKNIRKF 531 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~-~~~~i~~l~~g~i~~~ 531 (568)
||+|||+.++..+.++|.++ + .|||+||||++++.. +|+++++|++|+++.+
T Consensus 428 Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 428 PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999875 3 369999999999987 5899999999998765
No 20
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-60 Score=522.39 Aligned_cols=415 Identities=19% Similarity=0.247 Sum_probs=283.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch-hH----H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SA----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~-~~----~ 133 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++..... .. +
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCE
Confidence 6899999999998899999999999999999999999999999999999643 334444443333321110 00 0
Q ss_pred HHHHhccHHHHHHHHHHHHHhh--c-c-CC--C---hHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc--
Q psy16366 134 NIVLSADKNRVKLLKECSKLER--D-E-SG--D---NQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~--~-~-~~--~---~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
..+.+.. ....-+...+.+.. . . .+ . ...++.++.+.+.. +...+++++++..++..-...
T Consensus 82 ~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 82 AIIYQEL-HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEech-hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 0001100 00000000000000 0 0 00 0 11233334443321 233577788887776543332
Q ss_pred --cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHH
Q psy16366 196 --IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~ 261 (568)
|+|||. ++.+++++ .+.|||+||||++++..+||+|++|++|+++.....+.... .. .
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---~~---~-- 232 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---RD---Q-- 232 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC---HH---H--
Confidence 889992 55555543 47899999999999999999999999999874322221100 00 0
Q ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEee
Q psy16366 262 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDV 341 (568)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 341 (568)
..+.+. + . .... .. .. .+...++++++++|+
T Consensus 233 --------~~~~~~--~------------------------~----~~~~----~~------~~-~~~~~~~~~l~~~~~ 263 (501)
T PRK11288 233 --------LVQAMV--G------------------------R----EIGD----IY------GY-RPRPLGEVRLRLDGL 263 (501)
T ss_pred --------HHHHhc--C------------------------C----Cccc----cc------cc-cccCCCCcEEEEecc
Confidence 000000 0 0 0000 00 00 011123467999999
Q ss_pred EEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEecCCC
Q psy16366 342 TFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFDQHSG 409 (568)
Q Consensus 342 ~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~q~~~ 409 (568)
++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++.
T Consensus 264 ~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 338 (501)
T PRK11288 264 KGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRK 338 (501)
T ss_pred ccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHh
Confidence 832 489999999999999999999999999999999999999999998753 135899999863
Q ss_pred -CCCCCCCCHHHHHHHhc-------C--CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 410 -EHLFPDDTPCEYLMKLF-------N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 410 -~~l~~~~~~~e~l~~~~-------~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
..+++..|+.+++.... + .. .+.++++|+.+++......+++.+|||||||||+|||+|+.+|+||
T Consensus 339 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 339 AEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred hCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE
Confidence 34677789888764210 1 01 1346788999999533334588999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.++..+.++|.+ .+.|||+||||++++..+|+++++|.+|+++. .|+.+++.
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG-ELAREQAT 484 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence 99999999999999999998854 46799999999999999999999999999874 55555554
No 21
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.3e-60 Score=521.50 Aligned_cols=411 Identities=19% Similarity=0.254 Sum_probs=284.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~ 133 (568)
+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.+.++....... +
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCE
Confidence 6899999999998899999999999999999999999999999999999743 34455554444332111000 0
Q ss_pred HHHHhccHHHHHHHHHHHHHhh-cc-----C-CCh---HHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc-
Q psy16366 134 NIVLSADKNRVKLLKECSKLER-DE-----S-GDN---QLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~-~~-----~-~~~---~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~- 195 (568)
..+.+.. .....+...+.+.. .. . ... ..+..++.+.+.. +...+.+++++..++..-+..
T Consensus 82 ~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 82 GIIHQEL-NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEcch-hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 0111100 00000000000000 00 0 001 1233344444321 234577788887776544333
Q ss_pred ---cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHH
Q psy16366 196 ---IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~ 260 (568)
|+|||. ++.++++ ..+.|||+||||++++..+||+|++|++|+++.. |..+..... .
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~~------~- 232 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE-REVADLTED------S- 232 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-cCcCcCCHH------H-
Confidence 889992 4443333 3478999999999999999999999999999754 332221100 0
Q ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEe
Q psy16366 261 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHD 340 (568)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (568)
..... .+ . .... ..+ .++. ...+++++++|
T Consensus 233 ---------~~~~~--~~------------------------~----~~~~--~~~-------~~~~--~~~~~~l~~~~ 262 (501)
T PRK10762 233 ---------LIEMM--VG------------------------R----KLED--QYP-------RLDK--APGEVRLKVDN 262 (501)
T ss_pred ---------HHHHh--cC------------------------C----Cccc--ccc-------cccc--CCCCcEEEEeC
Confidence 00000 00 0 0000 000 0011 12346899999
Q ss_pred eEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEecCC
Q psy16366 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFDQHS 408 (568)
Q Consensus 341 v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~q~~ 408 (568)
+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+||++|++
T Consensus 263 l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 263 LSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred ccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 984 369999999999999999999999999999999999999999998753 13599999986
Q ss_pred C-CCCCCCCCHHHHHHHh----c----C-CC----HHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 409 G-EHLFPDDTPCEYLMKL----F----N-LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 409 ~-~~l~~~~~~~e~l~~~----~----~-~~----~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
. ..+++..|+.+++... . + .. .+.++++|+.+++. ... .+++.+|||||||||+|||||+.+|+
T Consensus 337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~~~p~ 415 (501)
T PRK10762 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPK 415 (501)
T ss_pred ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 3 2467788998876421 1 1 11 23467889999995 444 45889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|+++. .++.+++
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 482 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG-EFTREQA 482 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE-EeccccC
Confidence 99999999999999999999999876 4699999999999999999999999999863 4444444
No 22
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-59 Score=513.34 Aligned_cols=412 Identities=19% Similarity=0.242 Sum_probs=278.1
Q ss_pred EeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch-hH----HHHH
Q psy16366 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SA----VNIV 136 (568)
Q Consensus 62 i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~-~~----~~~v 136 (568)
++|++++|+++++|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.++++..... .. +..+
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4689999998899999999999999999999999999999999999643 334455444433321110 00 0001
Q ss_pred HhccHHHHHHHHHHHHHhh----ccC--CCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----c
Q psy16366 137 LSADKNRVKLLKECSKLER----DES--GDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----I 196 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~----~~~--~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L 196 (568)
.+.. ....-+...+.+.. ... ... ..+..++.+.+. .+...+++++++..++..-+.. +
T Consensus 79 ~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 79 HQEL-NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred eccc-ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 1100 00000000000000 000 000 122333333332 1233577788887776543332 8
Q ss_pred CCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHH
Q psy16366 197 YIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 264 (568)
Q Consensus 197 ~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~ 264 (568)
+|||. ++.+++++ .+.|||+||||.+++..+||+|++|++|+++.. |+-+.... .
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~---~--------- 224 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT-QPLAGLTM---D--------- 224 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee-cChhhCCH---H---------
Confidence 89992 55555543 478999999999999999999999999999754 32221100 0
Q ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEEeeEE
Q psy16366 265 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLHDVTF 343 (568)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~v~~ 343 (568)
.....+. + . .... .++. .....+++++++|+++
T Consensus 225 ----~~~~~~~--~------------------------~----~~~~------------~~~~~~~~~~~~~i~~~~l~~ 258 (491)
T PRK10982 225 ----KIIAMMV--G------------------------R----SLTQ------------RFPDKENKPGEVILEVRNLTS 258 (491)
T ss_pred ----HHHHHHh--C------------------------C----Cccc------------ccccccCCCCCcEEEEeCccc
Confidence 0000000 0 0 0000 0000 0112356899999998
Q ss_pred EeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEecCCC-C
Q psy16366 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFDQHSG-E 410 (568)
Q Consensus 344 ~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~q~~~-~ 410 (568)
.| +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++. .
T Consensus 259 ~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~ 335 (491)
T PRK10982 259 LR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRST 335 (491)
T ss_pred cc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhC
Confidence 75 3699999999999999999999999999999999999999999998753 123899999863 2
Q ss_pred CCCCCCCHHHH-----HHHh---cCC-C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 411 HLFPDDTPCEY-----LMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 411 ~l~~~~~~~e~-----l~~~---~~~-~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
.+++..++.++ +... ++. . ...++++++.+++......+++.+|||||||||+|||+++.+|+||||
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illL 415 (491)
T PRK10982 336 GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILML 415 (491)
T ss_pred CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 35666665443 2111 121 1 234677899999963333458899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+|||+.++..+.++|.+ .+.|||+||||++++..+||++|+|.+|+++.+ ++...|.
T Consensus 416 DEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~-~~~~~~~ 479 (491)
T PRK10982 416 DEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI-VDTKTTT 479 (491)
T ss_pred cCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE-EccccCC
Confidence 999999999999999888854 478999999999999999999999999999743 3334443
No 23
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-57 Score=506.33 Aligned_cols=403 Identities=25% Similarity=0.282 Sum_probs=270.8
Q ss_pred eeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------EEeccccCCch-
Q psy16366 64 NFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------YCEQEVEASDD- 130 (568)
Q Consensus 64 nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~-----------~~~qe~~~~~~- 130 (568)
+++.+|++. .+|++++ ++.+|+++||+||||||||||+|+|+|... |..+.+. +.++++.....
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 378889874 6999999 999999999999999999999999999643 3344442 11111100000
Q ss_pred -----h----HHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 131 -----S----AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 131 -----~----~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
. ..+.+...+ .... ....+.+. ..+...++.++.+.+. .+...+.+++++..++..-+.
T Consensus 155 ~~~~~~~~~~~~q~~~~~p-~~~~-~tv~e~l~---~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIP-KVFK-GKVRELLK---KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HhccCcceeecccchhhhh-hhhc-chHHHHHH---hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 0 000000000 0000 00000000 0011123333443331 233457777877777655443
Q ss_pred c----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHH
Q psy16366 195 T----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKE 259 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~ 259 (568)
. ++|||. ++.++++++ +.|||+||||++++..+||+|++|+++ .|.|..+...... +.
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~-----~g~~g~~~~~~~~--~~ 302 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE-----PGAYGVVSKPKGV--RV 302 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC-----ccccceecchhHH--HH
Confidence 3 889992 566666555 899999999999999999999999764 2333222211110 00
Q ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC--CCCCCeEE
Q psy16366 260 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP--YLPPPVLG 337 (568)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 337 (568)
...++. .... .. .... . ......+.++.+. ..+.++++
T Consensus 303 ~i~~~~---------~~~~---------------~~---e~~~---------~----~~~~~~~~~~~~~~~~~~~~~l~ 342 (590)
T PRK13409 303 GINEYL---------KGYL---------------PE---ENMR---------I----RPEPIEFEERPPRDESERETLVE 342 (590)
T ss_pred hHHHHH---------Hhcc---------------hh---hhhh---------c----cccCcceecCCCccccCCceEEE
Confidence 000000 0000 00 0000 0 0000111111111 12457899
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCC
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~ 417 (568)
++|+++.| ++. .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ .+++|++|++. ++...|
T Consensus 343 ~~~ls~~~-~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~t 416 (590)
T PRK13409 343 YPDLTKKL-GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGT 416 (590)
T ss_pred EcceEEEE-CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCc
Confidence 99999999 443 5999999999999999999999999999999999999999999876 57999999864 456789
Q ss_pred HHHHHHHhc-CC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 418 PCEYLMKLF-NL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 418 ~~e~l~~~~-~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
+.+++.... .. ....+.++|+.++|....+ +++.+|||||||||+||++|+.+|+||||||||+|||+.++..+.++
T Consensus 417 v~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~ 495 (590)
T PRK13409 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA 495 (590)
T ss_pred HHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 988875321 11 2334678899999986554 58899999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 496 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 496 l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|+++ ++|||+||||++++..+||++++|++ ++.
T Consensus 496 l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 496 IRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 9876 67999999999999999999999965 554
No 24
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-57 Score=458.09 Aligned_cols=415 Identities=20% Similarity=0.256 Sum_probs=293.3
Q ss_pred CccceEEeeeEEEeC----CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc---cCCCceEEEEeccccCC
Q psy16366 56 NSVDIKVENFSLSAK----GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEAS 128 (568)
Q Consensus 56 ~~~~I~i~nls~~~~----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~---ip~~~~i~~~~qe~~~~ 128 (568)
+...++++|+|+.|. ...+++++||+|++||.++|||+||||||--+..|.|.... .-+++++.|.+.++...
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 345789999999985 46899999999999999999999999999999999885321 12345677766666544
Q ss_pred chhHHHHHHhccHHHHHHHHHHHHHhhccCC-ChHHHHHHHHHHHhccCCC-----------------------------
Q psy16366 129 DDSAVNIVLSADKNRVKLLKECSKLERDESG-DNQLRLTEVYDELKSIEAD----------------------------- 178 (568)
Q Consensus 129 ~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~-~~~~~l~~v~~el~~~~~~----------------------------- 178 (568)
+......+-..+ ..++.++. +..+..- ....++.+++.-.+.+...
T Consensus 83 se~~lr~iRG~~---I~MIFQEP-MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL 158 (534)
T COG4172 83 SERQLRGVRGNK---IGMIFQEP-MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL 158 (534)
T ss_pred CHHHHhhhcccc---eEEEeccc-ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence 433322221100 00000000 0000000 0012222222222222222
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++|+|..++..-... +.||| +.|.++-++++.++|+||||+..+..+||||.+|..|+++.
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 34444444443221111 66788 26677777889999999999999999999999999999987
Q ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCcccee
Q psy16366 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 321 (568)
Q Consensus 242 ~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (568)
.+-.-+.|..... ..++.. . ..+|..
T Consensus 239 ~~~t~~lF~~PqH------------------------------------pYTr~L----l----~aeP~g---------- 264 (534)
T COG4172 239 TGTTETLFAAPQH------------------------------------PYTRKL----L----AAEPSG---------- 264 (534)
T ss_pred cCcHHHHhhCCCC------------------------------------hHHHHH----H----hcCCCC----------
Confidence 5433233321100 000000 0 001100
Q ss_pred eeecCCCCCCCCCeEEEEeeEEEeCCC----------ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 322 KFRFPNPPYLPPPVLGLHDVTFGYPGG----------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~v~~~y~~~----------~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.-+..+...+++++.++|.+.|+-. ..++++|||++++|+.+||||.+|||||||-..|.+++++. |
T Consensus 265 --~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G 341 (534)
T COG4172 265 --DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G 341 (534)
T ss_pred --CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c
Confidence 0011223457899999999999521 24789999999999999999999999999999999999876 9
Q ss_pred EEEECC--------------CeeEEEEecCCCCCCCCCCCHHHHHHHhc-----CCC----HHHHHHHHHhCCCCCcccc
Q psy16366 392 ELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----NLP----YEKSRRQLGMFGLPSYAHT 448 (568)
Q Consensus 392 ~i~~~~--------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-----~~~----~~~~~~~L~~~~l~~~~~~ 448 (568)
+|++.+ +.++..+||+|...+.|.+|+.+.+.... ..+ .+.+.+.|..+||+.....
T Consensus 342 ~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~ 421 (534)
T COG4172 342 EIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN 421 (534)
T ss_pred eEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 998642 45789999999999999999988664321 122 2456788999999987777
Q ss_pred CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
++|+++|||||||++||||++.+|.+++||||||+||..-+..+.++|+++ +-+.+|||||+..+..+|++++||.
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 889999999999999999999999999999999999999988888888754 5699999999999999999999999
Q ss_pred CCeEEEE
Q psy16366 525 KKNIRKF 531 (568)
Q Consensus 525 ~g~i~~~ 531 (568)
+|+|++.
T Consensus 502 ~GkiVE~ 508 (534)
T COG4172 502 DGKIVEQ 508 (534)
T ss_pred CCEEeee
Confidence 9999873
No 25
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-50 Score=381.82 Aligned_cols=200 Identities=28% Similarity=0.456 Sum_probs=178.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++||+++| |+..+|++||++|.+||+++|+||+|||||||||||+|+.+|++|+|.+++ |.++
T Consensus 1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 478999999999 788999999999999999999999999999999999999999999998764 3579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHH----hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMK----LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|++||+++ ||+.+|+.+++.. ..+.+.+ .+.++|+++||.+..+. +|.+|||||||||||||||+++|+
T Consensus 80 GmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-CccccCcHHHHHHHHHHHHcCCCC
Confidence 99999975 9999999998753 2345543 45678999999988775 679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++|+|||||+|||+....+.+.+.++ +.|+|+|||++.|+.+++||+++|++|.+++. |+++++
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~p~~~ 223 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GPPEEF 223 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cCHHHH
Confidence 99999999999999999888887765 67999999999999999999999999998764 466664
No 26
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-49 Score=417.36 Aligned_cols=410 Identities=20% Similarity=0.285 Sum_probs=278.5
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-HHH
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVN 134 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~~~ 134 (568)
....++++|++++|++..+|++|||+|.+||+++|+|.||||||||+|+|+|... |..+.+.+.++.+...+.. +..
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHh
Confidence 3446889999999999999999999999999999999999999999999999753 4556666665555443321 111
Q ss_pred HHHhccHHHHHHHHHHHHHhh-----ccC---C--Ch---HHHHHHHHHHHhc-------cCCCChHHH-HHHHHHhcCC
Q psy16366 135 IVLSADKNRVKLLKECSKLER-----DES---G--DN---QLRLTEVYDELKS-------IEADAAEPR-ARRILAGLGF 193 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~~-----~~~---~--~~---~~~l~~v~~el~~-------~~~~~~~~~-~~~~L~~lg~ 193 (568)
.-...-.+...+.......++ .+. + +. ..+..++++++.. ++..+..++ .-.+...+.+
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence 000000011111111111111 000 0 00 1111222222211 011122222 2223333333
Q ss_pred Cc---cCCCch---------HH---HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHH
Q psy16366 194 TT---IYIPSS---------RV---HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRK 258 (568)
Q Consensus 194 ~~---L~~ePn---------~L---~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~ 258 (568)
.. ++|||. .| -+-|+..|.++|+|||+++.+..+||||.+|.+|+.+.....-..+..
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~------- 235 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE------- 235 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-------
Confidence 32 889992 23 334456689999999999999999999999999998753210011100
Q ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecC--CCCCCCCCeE
Q psy16366 259 ELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP--NPPYLPPPVL 336 (568)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 336 (568)
.++-+ .+.. . ++ .-.|| ......+|++
T Consensus 236 ----------~~lv~-------------~MvG------------r-------~~---------~~~~~~~~~~~~~~~~l 264 (500)
T COG1129 236 ----------DELVR-------------LMVG------------R-------EL---------EDLFPEPPEEGIGEPVL 264 (500)
T ss_pred ----------HHHHH-------------HhhC------------c-------ch---------hhhcccccccCCCCcEE
Confidence 00000 0000 0 00 00011 1112356789
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeEEEE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRIGKF 404 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i~~~ 404 (568)
++++++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|..+.+ ..|+|+
T Consensus 265 ~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v 339 (500)
T COG1129 265 EVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYV 339 (500)
T ss_pred EEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeC
Confidence 99998743 2589999999999999999999999999999999999999999987642 358999
Q ss_pred ecCCC-CCCCCCCCHHHHHHHh-----cC---CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 405 DQHSG-EHLFPDDTPCEYLMKL-----FN---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 405 ~q~~~-~~l~~~~~~~e~l~~~-----~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+-+.. ..++..+++.+++... .+ ++ .+.++++...+++.......++.+||||.||||.|||+|+.+
T Consensus 340 ~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~ 419 (500)
T COG1129 340 PEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATD 419 (500)
T ss_pred CcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcC
Confidence 87753 4678888888875211 10 11 134566788888865555568999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||.|.|..+...+.++|+++ +.+||+||-++.++..+||||+||.+|+++.
T Consensus 420 p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 420 PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999998888876 6799999999999999999999999999975
No 27
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-46 Score=455.76 Aligned_cols=200 Identities=21% Similarity=0.265 Sum_probs=171.2
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.|+++||+|+|+++ +++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++ +.+|+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 58999999999543 5799999999999999999999999999999999999999999998753 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+++|+|. +|.. |+.+++......+.+++.++++..++.+..... ....||||||||++|||||+++|
T Consensus 1314 iVpQdp~--LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1314 IIPQSPV--LFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred EECCCCe--eeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999984 7765 899988543345677788888877765432211 23579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||.++...+.+.|++. +.|||+|+|+++.+.. ||+|++|++|+++++ |+++++.
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~-Gt~~eLl 1457 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY-DSPQELL 1457 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999875 5799999999999986 899999999999875 6666654
No 28
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-46 Score=452.24 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=170.5
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.|+++||+|+|+++ +++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++ |.+|+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999543 4799999999999999999999999999999999999999999998754 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+++|+|. +|.. |+.+++......+.+++.++++..++.+..... ....||||||||++|||||+++|
T Consensus 1317 iVpQdp~--LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1317 IIPQAPV--LFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred EECCCCc--cccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999984 7765 899988543345667788888877664332211 23579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||.++...+.+.|++. ++|||+|+|+++.+.. ||+|++|++|+++++ |+++++.
T Consensus 1394 ~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~-Gt~~eLl 1460 (1622)
T PLN03130 1394 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF-DTPENLL 1460 (1622)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999875 5799999999999976 799999999999875 5666553
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.5e-45 Score=445.80 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=171.2
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+|+|+++ .++|+||||+|++|+++||+|++|||||||+++|.|+++|++|+|..++ |.+|+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999643 4799999999999999999999999999999999999999999998764 56799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+++|+|. +|.. |+.+++......+.+++.++|+..++....... ....||||||||++|||||+++|
T Consensus 1364 iVpQdp~--LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1364 IIPQDPV--LFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred EECCCCc--ccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999984 7765 899988533345677888888877764322111 22579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+||||||||++||.++...+.+.|++. +.|||+|+|+++.+.. ||+|++|++|+|+++ |+++++.+
T Consensus 1441 ~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~-G~~~eLl~ 1508 (1522)
T TIGR00957 1441 KILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF-GAPSNLLQ 1508 (1522)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 999999999999999999999999875 5799999999999986 699999999999875 67766543
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-47 Score=371.16 Aligned_cols=202 Identities=31% Similarity=0.477 Sum_probs=172.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEEEEe
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIGKFD 405 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~~~~ 405 (568)
++++++|+++.| ++.++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.... +.+|||+|
T Consensus 3 ~~i~v~nl~v~y-~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEE-CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999 444799999999999999999999999999999999999999999998643 26899999
Q ss_pred cCCCCCCCCCCCHHHHHHHh-------cC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL-------FN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~-------~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|..........|+.+.+... ++ .+.+.+.++|+++|+.++.+ +++++|||||+|||.|||||+++|++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-CcccccCcHHHHHHHHHHHhccCCCE
Confidence 97643344456888877532 11 12367889999999998776 48999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|+|+.+...+.++|+++ ++|||+||||+..+..++|+++.|+ +++. ..|+.++..
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~-~~G~~~~~~ 226 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLI-ASGPPEEVL 226 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeE-eccChhhcc
Confidence 9999999999999999999998765 6799999999999999999998885 4554 457776654
No 31
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.1e-47 Score=374.34 Aligned_cols=209 Identities=30% Similarity=0.433 Sum_probs=179.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++|++++| +++++++|+||+|++|+++||+||||||||||||+|+|+++|.+|+|..+. ..+++|
T Consensus 2 ~L~~~~ls~~y-~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEE-CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 68999999999 688999999999999999999999999999999999999999999998764 347999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-------cC-CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-------FN-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-------~~-~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+||.+. .....|+.|.+... +. .. .+.+.+.|+.+|+....++ ++.+|||||||||.|||||+++|
T Consensus 81 vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 81 VPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred eccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-cccccChhHHHHHHHHHHHhcCC
Confidence 999874 45567887765421 11 12 2357788999999987765 79999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHh
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLG 547 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~ 547 (568)
++|||||||++||+..+..++++++++ +.|||+|+||++++.++||++++|++|+++....+-+.+.++.++++.
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHh
Confidence 999999999999999999999998765 479999999999999999999999999998644344455666666653
No 32
>KOG0055|consensus
Probab=100.00 E-value=1.3e-45 Score=419.09 Aligned_cols=200 Identities=31% Similarity=0.437 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 336 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++++||+|.||. +.++|+|+||+|++|+.+|||||+||||||.+.+|-..+.|+.|.|..+. |.+||
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 899999999973 34699999999999999999999999999999999999999999998743 56799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCC-------CCCcccc---CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFG-------LPSYAHT---IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~-------l~~~~~~---~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
.|.|+|. ||. .|+.|++... ...+.+++.++++..+ |+.-.++ .+-.+||||||||+|||||++++
T Consensus 1068 lVsQEP~--LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1068 LVSQEPV--LFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred eeccCch--hhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 9999985 665 5899988654 2356777776666543 2222222 12458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+||||||.||+||.+|.+.+.++|.+. +.|.|+|.|.+..++. ||.|.|+++|+|++ .|+.+++..
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 9999999999999999999999999876 6799999999999975 79999999999986 688877654
No 33
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=360.25 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=187.0
Q ss_pred CeEEEEeeEEEeCCCc---eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------C
Q psy16366 334 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~---~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~ 398 (568)
++|+++|+++.|++++ +++++|||+|.+||++||+|++|||||||+++|+|+.+|+.|+|.+++ .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999995433 499999999999999999999999999999999999999999998765 4
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhc---CC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..+.++||||...+.|..|+.+.+.... +. ..+++.++|..+||+.....+.|.+|||||+|||||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 5689999999999999999988775432 22 235588999999999876667889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEc-------CCHHHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFN-------GDFDDYREKL 542 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~-------g~~~~~~~~~ 542 (568)
+||||||||+||...+..++++|.+ ++-|+||||||+..+..+|||+++|++|++++.. .+...|.+.+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 9999999999999999999988864 4679999999999999999999999999998752 2345677777
Q ss_pred HHHHhh
Q psy16366 543 LTSLGE 548 (568)
Q Consensus 543 ~~~~~~ 548 (568)
++++..
T Consensus 242 l~a~~~ 247 (252)
T COG1124 242 LEAVPS 247 (252)
T ss_pred HHhhhc
Confidence 766543
No 34
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.6e-44 Score=432.64 Aligned_cols=200 Identities=21% Similarity=0.291 Sum_probs=171.6
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+|+|+++ +++|+||||+|++|+++||||++|||||||+++|.|+++|++|+|..++ +..|+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 59999999999654 4599999999999999999999999999999999999999999998653 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC-
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN- 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~- 471 (568)
|+||+|. +|.. |+.+++......+.+++.++++..++.+..... .-.+||||||||++|||||+++
T Consensus 1388 iVpQdp~--LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1388 MIPQDPV--LFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred EECCCCc--cccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 9999984 7765 899998543345678888999988876432221 1257999999999999999995
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||.++...+.+.|.+. +.|||+|+|+++.+.. ||+|++|++|+|+++ |+++++.
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~-Gt~~eLl 1532 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM-GSPRELV 1532 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE-CCHHHHH
Confidence 8999999999999999999999999875 5799999999999975 799999999999875 7777764
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-46 Score=360.54 Aligned_cols=189 Identities=29% Similarity=0.445 Sum_probs=167.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQH 407 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~ 407 (568)
.++.+++|++.| ++..+|+||||+|.+||+++|+||+|||||||||+|+|+.+|++|+|.... ...++|+||+
T Consensus 2 ~~l~i~~v~~~f-~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEe-CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 468899999999 568899999999999999999999999999999999999999999998754 4579999999
Q ss_pred CCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 408 SGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+. ++|..|+.+++.... +.+ .+.+.++|+.+||.+..+. +|++|||||||||+|||||+.+|+|||||||
T Consensus 81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 74 999999999874322 222 2457889999999988875 6799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECC
Q psy16366 481 TNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
|++||..++..+.+.| .+.+.|||+||||++.+-..+|||++|.++
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999977666655 455789999999999999999999999984
No 36
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.6e-46 Score=355.55 Aligned_cols=204 Identities=32% Similarity=0.458 Sum_probs=181.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------C
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------R 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 398 (568)
.+++++++|+++| |++.+++||||+|++||+++|+||+|||||||||+|.|+++|++|+|+... +
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5789999999999 889999999999999999999999999999999999999999999998643 4
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCHHHHHH----HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYEKSRR----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~~~~~~----~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
.++|++||+. .||..+|+.|+... ...++...+++ .|+.+||.+......|++|||||++|++||||++.
T Consensus 85 ~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 5799999986 49999999998753 23456655544 58899999884556789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+||++||||+||||.+...+.++|.+ ++.|+|+||||++.+..+||+++++.||+|. +.|+.+++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999999999999998887777765 4679999999999999999999999999996 7899888754
No 37
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-43 Score=425.53 Aligned_cols=201 Identities=25% Similarity=0.363 Sum_probs=170.1
Q ss_pred eEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC------------------------
Q psy16366 335 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP------------------------ 388 (568)
Q Consensus 335 ~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p------------------------ 388 (568)
-|+++||+|+|++ +.++|+|+||+|++|+++|||||+|||||||+++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4899999999964 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CccEEEECC-----------CeeEEEEecCCCCCCCCCCCHHHHHHHh-c
Q psy16366 389 ------------------------------NKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 426 (568)
Q Consensus 389 ------------------------------~~G~i~~~~-----------~~~i~~~~q~~~~~l~~~~~~~e~l~~~-~ 426 (568)
++|+|..++ +..|+|++|+|. +| ..|+.|++... .
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--LF-~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--LF-NMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--cc-cccHHHHHhcCCC
Confidence 589998753 457999999984 66 46899998654 2
Q ss_pred CCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
..+.+++.++++..++....... ....||||||||++|||||+++|+|||||||||+||.++.+.+.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 35677788887777664332211 23579999999999999999999999999999999999999999999
Q ss_pred Hhc----CceEEEEecchHHHHhhCceEEEEEC----CeEEEEcCCHHHHH
Q psy16366 497 KNY----QGGVILVSHDERLIRETDCELWALEK----KNIRKFNGDFDDYR 539 (568)
Q Consensus 497 ~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~----g~i~~~~g~~~~~~ 539 (568)
.+. +.|+|+|||++..+.. ||+|++|++ |+++.-.|+.+++.
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 876 5799999999999865 899999999 88665578887764
No 38
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-46 Score=353.06 Aligned_cols=210 Identities=30% Similarity=0.457 Sum_probs=186.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Ce
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RL 399 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 399 (568)
.+|+++||++.||+++.+|+||||+|++||+++|+||+|||||||||+|+|+..|++|+|..++ +.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4799999999999889999999999999999999999999999999999999999999998654 46
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHH-----------hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMK-----------LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~-----------~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+|||+||++. +.+.+++.++++. .+++. ...+-+.|+++|+.+.... +..+|||||+|||+|
T Consensus 82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-ra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-HhccCCcchhHHHHH
Confidence 7999999985 8889999887642 23332 2335578999999887765 689999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||+++|+|+|.|||+++|||.+...+++.|++. +.|||+..|+++++.++|+|++-|.+|+++ |+|+.++..+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence 99999999999999999999999999999998754 689999999999999999999999999997 8999988887
Q ss_pred HHHHHHh
Q psy16366 541 KLLTSLG 547 (568)
Q Consensus 541 ~~~~~~~ 547 (568)
+.++++.
T Consensus 238 ~~~~~iY 244 (258)
T COG3638 238 EALDEIY 244 (258)
T ss_pred HHHHHHh
Confidence 7666663
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-45 Score=352.61 Aligned_cols=196 Identities=28% Similarity=0.443 Sum_probs=174.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
|++++|||+.| +++.+++|+||+|..||+++++||+||||||+||+|.+++.|++|+|+.+. |.+|||
T Consensus 1 MI~~~nvsk~y-~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred Cceeeeeehhc-CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 57899999999 688999999999999999999999999999999999999999999998753 568999
Q ss_pred EecCCCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCC-ccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+-|.. .|||.+|+.+++.. ..+++.+ ++.++|..+||+. ....++|++|||||+|||-+||||+.+|+||
T Consensus 80 viQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 80 VIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 99986 49999999998754 3456554 4667899999975 3444578999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcC
Q psy16366 476 ILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 533 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g 533 (568)
||||||++|||-++..|.+.+. ++++||||||||++.+..++|+|.+|.+|+++.+..
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 9999999999999888877764 458899999999999999999999999999988754
No 40
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2e-43 Score=367.37 Aligned_cols=408 Identities=22% Similarity=0.297 Sum_probs=287.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-HH----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AV---- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~~---- 133 (568)
.+.+++++++|++..+.++|||+|.+||+.+|+|+||+|||||+++|.|.. -|..+.+.+.++++...++. +.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~--~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY--QPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc--cCCcceEEECCEEeccCCHHHHHHcCC
Confidence 578999999999999999999999999999999999999999999999974 35667777777777655432 11
Q ss_pred HHHHhccHHHHHHHHHHHHHhh----ccCC-----C---hHHHHHHHHHHHh-------ccCCCChHHHHH-HHHHhcCC
Q psy16366 134 NIVLSADKNRVKLLKECSKLER----DESG-----D---NQLRLTEVYDELK-------SIEADAAEPRAR-RILAGLGF 193 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~----~~~~-----~---~~~~l~~v~~el~-------~~~~~~~~~~~~-~~L~~lg~ 193 (568)
.+|.| .+.+.+....+++ .+.. + ...++.++.+++. .++..+.+.++| .+|..|-.
T Consensus 82 GMVhQ----HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 82 GMVHQ----HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred cEEee----ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 11111 1111111111111 1110 1 1233344444331 122223333333 45555433
Q ss_pred Cc---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHH
Q psy16366 194 TT---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKR 257 (568)
Q Consensus 194 ~~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~ 257 (568)
.. +||||. .|. -++..|+|||+|||.+.++.++|||+-+|..|+.+- .++.-....
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~-~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg---t~~~~~~~t---- 229 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILR-RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG---TVDPVAETT---- 229 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHH-HHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe---eecCCCCCC----
Confidence 32 889993 233 334568999999999999999999999999999753 222100000
Q ss_pred HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEE
Q psy16366 258 KELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLG 337 (568)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (568)
.+++.++- .... + ..... ..+..+++++|+
T Consensus 230 ----------~~ela~lM-------------------------vG~~-------v-----~~~~~---~~~~~pg~~vL~ 259 (501)
T COG3845 230 ----------EEELAELM-------------------------VGRE-------V-----VLRVV---KPPSTPGEVVLE 259 (501)
T ss_pred ----------HHHHHHHh-------------------------cCCc-------c-----ccccc---cCCCCCCCeEEE
Confidence 00011100 0000 0 00000 122334578999
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------eeEEEE
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------LRIGKF 404 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i~~~ 404 (568)
+++++..-..+.+.+++|||+|+.||++||.|-.|-|-+.|+.+|+|+.+|.+|.|..+.. ..++|+
T Consensus 260 V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~V 339 (501)
T COG3845 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYV 339 (501)
T ss_pred EeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccC
Confidence 9999987643457899999999999999999999999999999999999999999986542 358899
Q ss_pred ecCC-CCCCCCCCCHHHHHHH-hcC---------CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 405 DQHS-GEHLFPDDTPCEYLMK-LFN---------LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 405 ~q~~-~~~l~~~~~~~e~l~~-~~~---------~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|.+. ...+-+++++.+++.. .+. +.. ..++++++.|++.......|..+||||++||+.+||=|.
T Consensus 340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~ 419 (501)
T COG3845 340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA 419 (501)
T ss_pred ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence 9876 3557788899887642 111 122 335677899998744444578999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.+|++||+.+||-|||..+.+.+.+.|.+. +.+|++||-|++++..+||+|.||.+|+++.
T Consensus 420 ~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999998888654 6789999999999999999999999999964
No 41
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-45 Score=361.44 Aligned_cols=194 Identities=28% Similarity=0.401 Sum_probs=172.1
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
++++++|++.|+.. ..+++||||+|++||++||+|.+|||||||+|||.++..|++|+|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 57899999999531 4699999999999999999999999999999999999999999998653
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|.+||++|||++ |+...|+.+++.. ..+.+. +++.++|+.+||++..+. +|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-YPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-CchhcCcchhhHHHHHHHHh
Confidence 568999999985 8888999988753 334544 345678999999976665 78999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
.+|+|||+|||||+|||++.+.+.++|++ ++.||++|||.|+.+.++|+++.+|++|++++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999999999999998864 477999999999999999999999999999874
No 42
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-45 Score=357.62 Aligned_cols=203 Identities=35% Similarity=0.549 Sum_probs=176.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
+++.+++++|.|+++.++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|.|..+. +.++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 4788999999996556899999999999999999999999999999999999999999996533 4679
Q ss_pred EEEecCCCCCCCCCCCHHHHHH---HhcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~---~~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
||+||+|..+++.. |+.+.+. ...+.+.+ .+.++|..+|+....+ +++..|||||||||+||.+|+++|++
T Consensus 82 G~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCcceeeHHhhHHHHcCCCE
Confidence 99999999888866 5555443 23455543 3567899999998865 48899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||++||+.++..+++.+.++ +.|||++|||++++..+|+++|+|++|+++ ++|++.++.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~ 227 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIF 227 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHh
Confidence 9999999999999999999999876 459999999999999999999999999996 577765543
No 43
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.6e-44 Score=347.87 Aligned_cols=192 Identities=34% Similarity=0.475 Sum_probs=167.2
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+++++||++.|..+ ..+|++|||+|++||+++|+||+||||||||++|.|+.+|++|.|.+..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46799999999433 3699999999999999999999999999999999999999999987653
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..|||+||++. |.+.+|+.|++.. ..+.. ...+..++..+||.+....++|.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 457999999974 8999999998753 22332 2346678899999977765688999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
.+|++||+||||.+||.++.+.+++++.++ +.||||||||.+++. +|||++.|.||++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999998765 569999999999997 78999999999853
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.8e-42 Score=414.22 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=169.6
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+++|++ .+++|+||||+|++|+++||+|++|||||||+++|+|+++ ++|+|..++ +.+|+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5899999999964 4689999999999999999999999999999999999996 799998653 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC------CC----CCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI------PI----RDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~------~~----~~LSgGqkqRv~lA~al~~~p 472 (568)
|+||+|. +|.. |+.+++......+.+++.++|+..++....... ++ ..||||||||++|||||+++|
T Consensus 1296 ~IpQdp~--LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1296 VIPQKVF--IFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred EEeCCCc--cCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 9999984 7765 899998533345678888999988875432221 12 379999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||.++...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+|+++ |+++++.
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999875 5799999999999976 899999999999876 5555543
No 45
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.1e-44 Score=329.99 Aligned_cols=195 Identities=32% Similarity=0.494 Sum_probs=172.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+++++||++.|++++++|+||||+|++||++-|+||+|||||||||+|++..+|+.|+|..+. +.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 578999999998887799999999999999999999999999999999999999999998642 568
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
||++||++ .+.++.|+.|+.... .+.+.. .+.+.|+.+||.+..+. .|.+|||||||||+||||++.+|+
T Consensus 81 IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCCC
Confidence 99999997 488899999987532 344443 45578999999987765 568999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEc
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFN 532 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~ 532 (568)
|||.||||.+|||.....+++++.++ |.||||+|||.+++..+..+++.+++|+++..+
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999988888887655 679999999999999999999999999997543
No 46
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.4e-44 Score=388.03 Aligned_cols=204 Identities=38% Similarity=0.689 Sum_probs=182.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
.+|+++|+++.| +++++|+|+||+|.+|+++||||+||||||||||+|+|.+.|++|+|......+++|++|++. ++
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~ 78 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LD 78 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cC
Confidence 478999999999 789999999999999999999999999999999999999999999999998899999999974 56
Q ss_pred CCCCHHHHHHHhcC------------------------------------C-CHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 414 PDDTPCEYLMKLFN------------------------------------L-PYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 414 ~~~~~~e~l~~~~~------------------------------------~-~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
...|+.+++..... + .+.++..+|..+|++.. ..++++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 66677765432110 0 01345567888999876 458999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
|||.||+||+||+.+|++|||||||||||.+++.+|.+.|.++.+|||+||||++|+..+|++||.++.|++..|.|+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy16366 537 DYREKL 542 (568)
Q Consensus 537 ~~~~~~ 542 (568)
.|.+..
T Consensus 237 ~~~~~r 242 (530)
T COG0488 237 SYLEQK 242 (530)
T ss_pred HHHHHH
Confidence 997654
No 47
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.4e-43 Score=360.89 Aligned_cols=204 Identities=29% Similarity=0.416 Sum_probs=178.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
.++++++||++.| ++..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+.. +.+||
T Consensus 5 ~~~i~i~~l~k~~-~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 5 VAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CceEEEEeEEEEE-CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 4689999999999 567899999999999999999999999999999999999999999998643 35699
Q ss_pred EEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++.+|+.+++.. .++.+. ..+.++++.++|....+ +++..|||||||||+||+||+.+|++|
T Consensus 84 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 84 VVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999874 7788999998753 233332 34557889999987655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
||||||+|||+.++..+.++|+++ +.|||++||+++++..+||++++|++|+++ +.|+.+++.+.
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence 999999999999999999999876 579999999999999999999999999997 56787776543
No 48
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=364.30 Aligned_cols=202 Identities=27% Similarity=0.452 Sum_probs=175.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGK 403 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~ 403 (568)
.+.++++||++.| ++..+++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|..+. ++.||+
T Consensus 3 ~~~l~i~~v~k~y-g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeec-CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 4679999999999 688999999999999999999999999999999999999999999998753 567999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcC----CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFN----LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~----~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+||+. .|||.+|+.+++..... ... +.+.++|+.++|.++..+ ++.+|||||||||||||||+.+|+||
T Consensus 82 VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R-~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhh-ChhhhChHHHHHHHHHHHhhcCcchh
Confidence 99997 49999999998753221 222 357789999999998775 67999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH-HH
Q psy16366 476 ILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~-~~ 539 (568)
|||||.++||..-+..+...| ++.+.|.|+||||.+.+..++|+|.+|++|+|... |++++ |.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~-gtP~eiY~ 226 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV-GTPEEIYE 226 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec-CCHHHHhh
Confidence 999999999998776655554 45688999999999999999999999999999765 55544 43
No 49
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-43 Score=348.22 Aligned_cols=198 Identities=30% Similarity=0.422 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 401 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4689999999 567899999999999999999999999999999999999999999997642 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+|++|++ .+++..|+.+++... . +... +.+.++++.+++....+ +++.+|||||||||+|||||+.+|+
T Consensus 80 ~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999986 377788998887532 1 1222 34567899999987664 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 224 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEEL 224 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHH
Confidence 99999999999999999999998764 579999999999999999999999999996 45666554
No 50
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-43 Score=358.19 Aligned_cols=203 Identities=35% Similarity=0.523 Sum_probs=179.4
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
.+++++||++.| + ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.... +.++|
T Consensus 3 ~~i~~~~l~k~~-~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 3 EVIEVRNLTKKY-GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred ceeeecceEEEe-CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 357889999999 6 68999999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++.+|+.|++.. .++.+ .+.+.++|+.|+|.... .+++++||+||||||+||+||+.+|+||
T Consensus 82 y~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 82 YVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred EEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999985 8999999997743 34433 45688999999999855 4579999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---Q-GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
||||||+|||+.++..+.++|+++ + .|||++||.++.+..+||++++|++|+++. .|+.+++...
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~-~g~~~~l~~~ 227 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA-EGTPEELKEK 227 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHHh
Confidence 999999999999999999999876 3 599999999999999999999999999974 5677776544
No 51
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=359.93 Aligned_cols=202 Identities=28% Similarity=0.410 Sum_probs=175.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
.|+++||++.| |+..+++++||+|..||+++|+||||||||||||+|+|+.+|++|+|.+.. .+.|+++|
T Consensus 3 ~i~l~~v~K~y-g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSF-GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEc-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 58999999999 443399999999999999999999999999999999999999999998753 35799999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +||.+|+.+++... .+.+ .+++++.++.++|++.+++ .|.+|||||||||||||||+.+|+++|||
T Consensus 82 Q~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 82 QNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred CCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 9974 99999999987542 2333 3456788999999998886 57999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+|+||...+..+...|+ +++.|+|+||||...+...+|+|.+|.+|++..+..+.+.|.+
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999988776666554 4678999999999999999999999999999877655555644
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.1e-43 Score=345.35 Aligned_cols=191 Identities=32% Similarity=0.512 Sum_probs=165.9
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Ce
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 399 (568)
+++++|+++.|+++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999533 4799999999999999999999999999999999999999999998653 13
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.++|++|++. +++..|+.+++... .+.. .+.+.++++.+|+....+. ++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-LPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCC
Confidence 5899999863 77778998876432 1222 2456778999999876654 77999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999876 57999999999999999999999999874
No 53
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.8e-42 Score=361.03 Aligned_cols=205 Identities=29% Similarity=0.397 Sum_probs=178.6
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------Cee
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLR 400 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ 400 (568)
.+.++|+++||++.| +++.+|+||||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+ +..
T Consensus 37 ~~~~~i~i~nl~k~y-~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 37 MSTVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred CCceeEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 345689999999999 677899999999999999999999999999999999999999999998643 346
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|||++|++. +++..|+.+++.. .++.+. +.+.++++.++|..... +++.+|||||||||+||+||+.+|+
T Consensus 116 ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 116 IGVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-ARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999864 7788899998753 223332 23557899999987655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||||||+|||+.++..+.++|.++ +.|||++||+++.+..+||++++|++|+++ +.|+.+++.+
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 261 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALID 261 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999875 679999999999999999999999999997 5688877654
No 54
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.6e-42 Score=361.06 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=172.7
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|++ ..++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4789999999952 24799999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+.+|||+||++. +++..|+.+++... .+.+. +.+.++|+.+||.+..+ +++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHh
Confidence 346999999974 78888999887532 23332 34567899999987665 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|++|||||||++||+.+...+.++|+++ +.|||+||||++.+.++||++++|++|+++. .|+.+++
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v 228 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEI 228 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999988764 6799999999999999999999999999975 4666554
No 55
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.8e-42 Score=357.03 Aligned_cols=202 Identities=30% Similarity=0.418 Sum_probs=175.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGK 403 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~ 403 (568)
.+|+++||++.| +++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+ +..+||
T Consensus 3 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEe-CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 579999999999 567899999999999999999999999999999999999999999998643 346999
Q ss_pred EecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++|++. +++..|+.+++.. ..+.+. +.+.++++.+++....+. ++.+|||||||||+||+||+.+|++||
T Consensus 82 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-RVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999864 6778899988742 123332 235568899999876554 789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..|+.+++..
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999876 579999999999999999999999999986 4577776643
No 56
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-43 Score=346.44 Aligned_cols=199 Identities=29% Similarity=0.423 Sum_probs=172.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i~ 402 (568)
++.++++++.| +...+++|||++|+.||.+|++||||||||||||+|+|++.|+.|.|..+.+ .+||
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 47889999999 6788999999999999999999999999999999999999999999986543 5799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-----CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|+||++. +|+.+|+.+++.... ..+ ..++.++|..+.|++..+. +|.+|||||||||||||||+.+|+
T Consensus 81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-yP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-YPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-CchhcChHHHHHHHHHHHhhcCCC
Confidence 9999975 999999999875422 111 2356678999999987765 679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+||||||+++||..-+..|...| .+++.|+|+||||.+++.++|+++++|++|+|... |+.++.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv-g~p~ev 225 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV-GPPDEV 225 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee-CCHHHH
Confidence 99999999999998876666555 45688999999999999999999999999999765 555553
No 57
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=340.84 Aligned_cols=191 Identities=31% Similarity=0.443 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEe-CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 4689999999 567899999999999999999999999999999999999999999997653 236999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++... .+.. .+.+.+++..+++....+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 874 67778998877432 1222 234667899999986655 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999764 5799999999999999999999999999863
No 58
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-42 Score=337.55 Aligned_cols=189 Identities=28% Similarity=0.434 Sum_probs=164.1
Q ss_pred EEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEecCC
Q psy16366 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQHS 408 (568)
Q Consensus 338 ~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q~~ 408 (568)
++|+++.| ++ +++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.. ..++|++|++
T Consensus 2 ~~~l~~~~-~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEe-CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 67999999 45 78999999999999999999999999999999999999999999987542 3699999986
Q ss_pred CCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
...++ ..|+.+++... .......+.++++.+++....+ +++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 81 ~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQLF-TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhhh-hccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 42333 46888887532 1223356788999999987665 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999876 579999999999999999999999999873
No 59
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=341.20 Aligned_cols=197 Identities=26% Similarity=0.377 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +.+++|++
T Consensus 1 i~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEE-CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999998653 23699999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +++..|+.+++.. ..+.. .+.+.++++.+++....+ .++.+|||||||||+||+|++.+|++||||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9874 6777898887643 12332 234678899999986554 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
|||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++. .++.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 218 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPEE 218 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChHH
Confidence 999999999999999988764 6799999999999999999999999999974 355443
No 60
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=346.25 Aligned_cols=194 Identities=30% Similarity=0.361 Sum_probs=170.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEec
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQ 406 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q 406 (568)
.++|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 10 ~~~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 4679999999999 567899999999999999999999999999999999999999999998653 246999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
++. +++..|+.+++.... ......+.++++.++|....+ +++.+|||||||||+|||+|+.+|++|||||||+|||
T Consensus 89 ~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred Ccc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 863 677789999875322 112356778899999987655 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 486 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 486 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999988654 6799999999999999999999999999864
No 61
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=360.53 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=174.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++|+++.|++++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|..+. +..|||++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 689999999995457899999999999999999999999999999999999999999998653 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++.... +.+. ..+.++++.+||....+. ++.+|||||||||+|||||+.+|+|||||
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-KPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 997 4889999999875322 2232 346678999999876654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+.++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++.. .|+++++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~ 222 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEV 222 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHH
Confidence 999999999999888877653 6799999999999999999999999999975 4666664
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-42 Score=341.76 Aligned_cols=199 Identities=29% Similarity=0.392 Sum_probs=170.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 2 ~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEE-CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998653 23599999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CC----C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NL----P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~----~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++. +++..|+.+++.... +. . .+.+.++++.+++....+ +++.+|||||||||+|||||+.+|++
T Consensus 81 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9874 677789988765321 11 1 134567899999986554 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 224 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEV 224 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 9999999999999999999998765 5699999999999999999999999999864 4666554
No 63
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=358.12 Aligned_cols=200 Identities=26% Similarity=0.419 Sum_probs=175.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKF 404 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~ 404 (568)
++|+++||++.| ++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +.+|||+
T Consensus 5 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRF-GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEE-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 579999999999 677899999999999999999999999999999999999999999998753 3579999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++ .+|+.+|+.+++... .+.+ .+.+.++++.+++.+..+ +++.+|||||||||+|||||+.+|++|||
T Consensus 84 fQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 84 FQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-RYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred eCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9997 489999999987642 2232 235677899999987765 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++.. .|+.+++
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~ 224 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQEL 224 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999888888653 6799999999999999999999999999975 4666664
No 64
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8e-42 Score=346.51 Aligned_cols=202 Identities=26% Similarity=0.423 Sum_probs=173.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------C
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------R 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 398 (568)
.++|+++||++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +
T Consensus 5 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 3589999999999 567899999999999999999999999999999999999999999997642 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
..++|++|++ .+++..|+.+++... . ..+. ..+..+|..+++....+ +++.+|||||||||+|||||+.
T Consensus 84 ~~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 84 KRMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-LMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred hcEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence 3589999986 367778998876431 1 1222 24556899999987655 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..|+.+++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999998765 569999999999999999999999999997 457776664
No 65
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-41 Score=350.88 Aligned_cols=201 Identities=28% Similarity=0.468 Sum_probs=177.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
+++++|++++| +++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+ +..+||+
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLY-GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEE-CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 47899999999 677899999999999999999999999999999999999999999998643 2469999
Q ss_pred ecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++. +++.+|+.+++.. .++.+ .+.+.+++..|||....+ +++..|||||||||+||+||+.+|++|||
T Consensus 81 ~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99874 7888899998753 23333 245677899999987665 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||+|||+.++..+.+.|+++ +.|||++||+++++.++|+++++|++|++. +.|+.+++..
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 9999999999999999999887 579999999999999999999999999997 5788888754
No 66
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-42 Score=341.74 Aligned_cols=201 Identities=29% Similarity=0.406 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 401 (568)
++++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 46899999994227899999999999999999999999999999999999999999997643 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-----------~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+|++|++. +++..|+.+++.... +. ..+.+.++++.+++..... +++.+|||||||||+|||
T Consensus 81 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-QRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-CCcccCCHHHHHHHHHHH
Confidence 99999874 677789988764211 11 1234667899999986554 478999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|.+|+++. .++.+++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 234 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAELTD 234 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHhhH
Confidence 999999999999999999999999999998764 5799999999999999999999999999874 577776643
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-42 Score=337.08 Aligned_cols=192 Identities=31% Similarity=0.424 Sum_probs=165.9
Q ss_pred EEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q 406 (568)
|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999421 6899999999999999999999999999999999999999999998754 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++... .+.. .+.+.++++.+++....+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 874 67778998876432 2222 235677899999986655 4679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE--CCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE--KKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~--~g~i~~ 530 (568)
||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|+ +|+++.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999998764 5799999999999999999999999 799864
No 68
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.6e-42 Score=340.94 Aligned_cols=198 Identities=33% Similarity=0.486 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEE-CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 4689999999 567899999999999999999999999999999999999999999997643 135999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CC----------C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NL----------P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~----------~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
++|++. +++..|+.+++.... .. . .+.+.++++.+|+....+ +++.+|||||||||+|||
T Consensus 80 v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-RPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-CChhhCCHHHHHHHHHHH
Confidence 999874 778889988764321 11 1 224567899999986655 478999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++.. .++.+++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEV 230 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHHHh
Confidence 999999999999999999999999999999765 5799999999999999999999999999964 5666554
No 69
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.9e-42 Score=334.37 Aligned_cols=191 Identities=31% Similarity=0.479 Sum_probs=168.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC---------eeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR---------LRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~i~~~~q 406 (568)
|+++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEE-CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 4689999999 5678999999999999999999999999999999999999999999987542 35999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++. +++..|+.+++... .+...+.+..+++.+++....+ +++.+|||||||||+|||+|+.+|++|||||||++
T Consensus 80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 863 77788999887432 2334566788899999987655 47899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 484 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++.
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999998764 5799999999999999999999999999863
No 70
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.3e-42 Score=337.69 Aligned_cols=189 Identities=34% Similarity=0.495 Sum_probs=162.7
Q ss_pred EEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 336 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
|+++||++.|+++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999432 6899999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.+++..+|+....+ +++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-HYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-cChhhcCHHHHHHHHHHHHHcc
Confidence 236999999864 67778998876532 2222 235677899999987655 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999998765 569999999999997 9999999999874
No 71
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.3e-42 Score=357.47 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=175.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKF 404 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~ 404 (568)
++|+++||+++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+||+
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEe-CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 478999999999 567899999999999999999999999999999999999999999998753 3469999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
||++ .+|+.+|+.+++.... +.+ ...+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-YPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9997 4899999999875322 222 2456788999999887664 7899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++... |+.+++.
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~-g~~~~~~ 223 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV-GTPQEIY 223 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 9999999999999888888653 67999999999999999999999999999754 6665543
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=5.8e-42 Score=342.31 Aligned_cols=201 Identities=29% Similarity=0.418 Sum_probs=171.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+++++||++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 478999999994257899999999999999999999999999999999999999999997643 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-----------~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
++|++|++. +++..|+.+++.... +. ..+.+.++++.+++....+ +++.+|||||||||+||
T Consensus 81 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-QRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHH
Confidence 899999864 677789888774211 11 1234667899999986555 47899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++ ..|+.+++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhC
Confidence 9999999999999999999999999999998765 569999999999999999999999999997 457766653
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=356.42 Aligned_cols=200 Identities=24% Similarity=0.379 Sum_probs=172.6
Q ss_pred eEEEEeeEEEeC--C-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYP--G-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~--~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||+++|+ + .+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 478999999994 1 36799999999999999999999999999999999999999999998642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+..|||++|++. +++..|+.+++... .+.+. +.+.++++.+||....+ +++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHc
Confidence 246999999874 77788998877532 23332 34567899999987655 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~ 228 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEV 228 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999765 5799999999999999999999999999974 5666554
No 74
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-42 Score=333.90 Aligned_cols=191 Identities=29% Similarity=0.487 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------CeeEEEEecCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------RLRIGKFDQHS 408 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~i~~~~q~~ 408 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4689999999 567899999999999999999999999999999999999999999998764 34699999987
Q ss_pred CCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
. +++..|+.+++... .+.. .+.+.++++.+++....+ .++.+|||||||||+||+||+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 G--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred c--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 77778998876432 2222 234667899999986555 478999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||+.++..+.+.|+++ +.|||+||||.+++..+|+++++|.+|++..
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999999999999999765 5699999999999999999999999999864
No 75
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.8e-42 Score=336.39 Aligned_cols=190 Identities=33% Similarity=0.507 Sum_probs=164.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 478999999994356899999999999999999999999999999999999999999997643 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +++..|+.+++... .+.. .+.+.++++.+++....+ +++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCC
Confidence 899999873 67778888876432 2222 235677899999986554 4679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999765 6799999999999999999999999874
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-42 Score=346.79 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=172.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++|+++||++.|+++.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 4799999999995456799999999999999999999999999999999999999999998654 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++...++ ..|+.+++... .+... ..+..+++.+||....+ +++.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998743344 46888877531 12222 34667899999986655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||++||+.++..+.++|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 999999999999999999999765 5799999999999999999999999999974 4666554
No 77
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.5e-41 Score=357.71 Aligned_cols=202 Identities=25% Similarity=0.408 Sum_probs=176.3
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEE
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIG 402 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~ 402 (568)
..++|+++|+++.| +++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+|
T Consensus 11 ~~~~L~l~~l~~~~-~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35689999999999 567899999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|+||++ .+|+.+|+.+++.... +.+. +.+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-KPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999997 4899999999875322 2232 346678999999877665 67999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||++||..++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++... |+++++
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~i 232 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD-GTPREI 232 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 999999999999999888888653 67999999999999999999999999999854 566554
No 78
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.1e-41 Score=333.63 Aligned_cols=192 Identities=25% Similarity=0.391 Sum_probs=166.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEE-CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999998643 235999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++... .+... +.+.+++..+|+....+ .++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 874 67778988876432 22222 34567899999986655 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.+
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999998764 57999999999999999999999999998753
No 79
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.2e-42 Score=335.71 Aligned_cols=192 Identities=24% Similarity=0.374 Sum_probs=167.4
Q ss_pred eEEEEeeEEEeCCCc----eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------Cee
Q psy16366 335 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~----~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ 400 (568)
+++++||++.|+ ++ ++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~v~~~~~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFR-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecC-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 478999999994 44 799999999999999999999999999999999999999999998653 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++ .+++..|+.+++... .+.. .+.+.++++.+|+....+ +++.+|||||||||+|||||+.+|+
T Consensus 80 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 80 LGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-RRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred EEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-hhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999987 477778998876421 2222 234677899999986555 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+.+...+.+.|.++ +.|||+||||.+++..+|+++++|++|++..
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 99999999999999999999999875 5799999999999999999999999999864
No 80
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=337.59 Aligned_cols=199 Identities=26% Similarity=0.413 Sum_probs=170.6
Q ss_pred eEEEEeeEEEeCCCc----eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~----~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
+|+++|++++|+ ++ ++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 ~i~~~~l~~~~~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFG-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEcc-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 478999999994 44 899999999999999999999999999999999999999999997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++. +++..|+.+++... .+.. ...+.++++.+++..... +++.+|||||+|||+|||||+
T Consensus 80 ~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 80 ARRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHHHHHHHHHh
Confidence 245999999874 77778998876432 2222 234677899999986655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 999999999999999999999999998764 5699999999999999999999999999974 4565544
No 81
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=349.71 Aligned_cols=203 Identities=27% Similarity=0.377 Sum_probs=170.6
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
+|+++||++.|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 47899999999532 2599999999999999999999999999999999999999999987631
Q ss_pred ----------------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCcccc
Q psy16366 398 ----------------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHT 448 (568)
Q Consensus 398 ----------------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~ 448 (568)
+..|||++|++..+++. .|+.+++... .+.+. +.+.++++.+||......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 23589999987555664 5888877421 23332 346778999999743334
Q ss_pred CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+++.+|||||||||+||++|+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 578999999999999999999999999999999999999999999988764 67999999999999999999999999
Q ss_pred CeEEEEcCCHHHHH
Q psy16366 526 KNIRKFNGDFDDYR 539 (568)
Q Consensus 526 g~i~~~~g~~~~~~ 539 (568)
|+++. .|+.++..
T Consensus 241 G~i~~-~g~~~~~~ 253 (305)
T PRK13651 241 GKIIK-DGDTYDIL 253 (305)
T ss_pred CEEEE-ECCHHHHh
Confidence 99874 56666643
No 82
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=357.55 Aligned_cols=199 Identities=25% Similarity=0.349 Sum_probs=173.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
.|+++|++++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..|+|++
T Consensus 3 ~l~i~~l~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAY-GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 58899999999 567899999999999999999999999999999999999999999998643 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +|+.+|+.+++... .+.+. +.+.++++.++|....+ +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9874 88889999987532 22222 34677899999987665 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~~~i 221 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 221 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 4666664
No 83
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-41 Score=359.95 Aligned_cols=201 Identities=28% Similarity=0.427 Sum_probs=174.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++|+++|++++| +++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.. +.++|
T Consensus 2 ~~L~~~nls~~y-~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 479999999999 578899999999999999999999999999999999999999999998643 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-------cC-CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-------FN-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-------~~-~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. ++..+|+.+++... +. .. .+.+.++++.+++....+ +++.+|||||||||+|||||+++
T Consensus 81 ~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-RPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcC
Confidence 9999873 66778998876431 11 11 245678899999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||+|||+.++..+.++|+++ +.|||++|||++++.++|+++++|++|+++. .|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 9999999999999999999999988765 5699999999999999999999999999974 67887754
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=337.02 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=166.6
Q ss_pred CCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------
Q psy16366 333 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 397 (568)
+|+++++||++.|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4689999999999532 4799999999999999999999999999999999999999999998653
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.++++.+|+....+. ++.+|||||||||+||||
T Consensus 83 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-RPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHH
Confidence 135999999863 67778999887431 2222 2346678999999876554 679999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+.+|+||||||||+|||+.+...+.+.|.++ +.|||+||||++++..+ +++++|++|+++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99999999999999999999999999998764 56999999999999876 5999999999864
No 85
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-41 Score=340.09 Aligned_cols=200 Identities=30% Similarity=0.457 Sum_probs=171.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
++|+++||++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.+..++|++|++. ++
T Consensus 3 ~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~--~~ 79 (251)
T PRK09544 3 SLVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY--LD 79 (251)
T ss_pred cEEEEeceEEEE-CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccc--cc
Confidence 589999999999 567899999999999999999999999999999999999999999999887778999999874 33
Q ss_pred CC--CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHH
Q psy16366 414 PD--DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491 (568)
Q Consensus 414 ~~--~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~ 491 (568)
+. .++.+++....+...+.+..+++.+++....+ .++..|||||+|||+||+||+.+|++|||||||+|||+.++..
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 33 35555543222334566788899999987655 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 492 LAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 492 l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+.|.++ +.|||+||||++++..+|+++|+|++ +++ ..|+.+++.
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 99988654 67999999999999999999999965 665 457776654
No 86
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.6e-42 Score=335.73 Aligned_cols=188 Identities=32% Similarity=0.468 Sum_probs=161.0
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecCCCCC
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQHSGEH 411 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~~~~~ 411 (568)
++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++...
T Consensus 2 ~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEE-CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 67999999 567899999999999999999999999999999999999999999998865 35699999987532
Q ss_pred CCCCCCHHHHHHHhcC--------C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 412 LFPDDTPCEYLMKLFN--------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~--------~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
.+...|+.+++..... . ..+.+.++++.+++....+ +++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2234688888753211 0 1234677899999986554 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 9999999999999999875 4699999999999999999999998763
No 87
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=340.91 Aligned_cols=203 Identities=26% Similarity=0.402 Sum_probs=174.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
...|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 3568999999999 567899999999999999999999999999999999999999999987543
Q ss_pred ---------CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 398 ---------~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
+..++|++|++. +++..++.+++.. ..+.. ...+.++++.+|+.......++.+|||||||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 235899999874 6777899888742 11222 2346778999999865434578999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999988765 5799999999999999999999999999974 577766
Q ss_pred HH
Q psy16366 538 YR 539 (568)
Q Consensus 538 ~~ 539 (568)
+.
T Consensus 239 ~~ 240 (257)
T PRK10619 239 LF 240 (257)
T ss_pred hh
Confidence 53
No 88
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=341.94 Aligned_cols=203 Identities=23% Similarity=0.355 Sum_probs=173.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECC------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP------------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~------------ 397 (568)
+|+|+++||++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 2 ~~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 2 QTIIRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred CcEEEEeeEEEEe-CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3589999999999 5678999999999999999999999999999999999999986 48887543
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHhc-----------CC-C---HHHHHHHHHhCCCCCccccCCCCCCCHhH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 458 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-----------~~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGq 458 (568)
+..++|++|++. +++..|+.+++.... +. . ...+.++++.+|+....+ +++.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~ 157 (262)
T PRK09984 81 IRKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-QRVSTLSGGQ 157 (262)
T ss_pred HHHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-CCccccCHHH
Confidence 125899999863 677889988875311 00 1 234677899999986555 4789999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 459 kqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|++. ..|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~ 236 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGS 236 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCC
Confidence 99999999999999999999999999999999999999765 569999999999999999999999999985 5688
Q ss_pred HHHHHH
Q psy16366 535 FDDYRE 540 (568)
Q Consensus 535 ~~~~~~ 540 (568)
++++.+
T Consensus 237 ~~~~~~ 242 (262)
T PRK09984 237 SQQFDN 242 (262)
T ss_pred HHHhcc
Confidence 888744
No 89
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-41 Score=332.24 Aligned_cols=190 Identities=32% Similarity=0.451 Sum_probs=166.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|+++|+++.| +++++|+|+||+|.+| +++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 i~~~~~~~~~-~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRY-GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEE-CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 4689999999 5678999999999999 9999999999999999999999999999998754 34689999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +++..|+.+++... .+.. .+.+.++++.+++....+ .++.+|||||||||+|||||+.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9874 67778998876431 2222 234667899999986655 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999876 5799999999999999999999999999863
No 90
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-41 Score=337.14 Aligned_cols=201 Identities=26% Similarity=0.422 Sum_probs=173.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+
T Consensus 1 ~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 478999999999 567899999999999999999999999999999999999999999998643 1259
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcC-----------C----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFN-----------L----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~-----------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+|++|++ .+++..|+.+++..... . ....+..+++.+|+....+ .++.+|||||+|||+|||
T Consensus 80 ~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-RLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHH
Confidence 9999986 47788899887653211 1 1234667899999986655 478999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|+++ ..++.+++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 999999999999999999999999999999876 469999999999999999999999999997 457777664
No 91
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.5e-41 Score=333.24 Aligned_cols=193 Identities=28% Similarity=0.400 Sum_probs=166.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 478999999995456899999999999999999999999999999999999999999997643 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +++..|+.+++... .+... ..+.++++.+++....+ +++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCC
Confidence 899999873 66678988877532 22332 23567899999987655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+.+++.+.++|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999988765 5799999999999999999999999999853
No 92
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=346.47 Aligned_cols=203 Identities=29% Similarity=0.398 Sum_probs=171.3
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
+|+++||++.|+++ +++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 47899999999532 2599999999999999999999999999999999999999999997643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..+||++|++..+++. .|+.+++... .+.+. ..+.++++.++|......+++..|||||||||+|||+|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 23589999997545665 5888876432 23332 23567899999964333457899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|.+|+++ ..|+.+++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 232 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVF 232 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999999988754 579999999999999999999999999997 467777754
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=340.31 Aligned_cols=192 Identities=28% Similarity=0.394 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQHS 408 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~~ 408 (568)
+|+++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. ...++|++|++
T Consensus 1 ml~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADY-GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEe-CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 47899999999 567899999999999999999999999999999999999999999998753 23589999986
Q ss_pred CCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
. +++..|+.+++... .+... +.+.++++.+||....+ +++.+|||||||||+|||+|+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 G--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred c--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 67778998876432 22222 34678899999986555 478999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE--CCeEEE
Q psy16366 482 NNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE--KKNIRK 530 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~--~g~i~~ 530 (568)
+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|+ +|+++.
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999999999775 5799999999999999999999998 488864
No 94
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.6e-41 Score=338.12 Aligned_cols=200 Identities=26% Similarity=0.430 Sum_probs=171.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 397 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 68999999999 567899999999999999999999999999999999999999999987532
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..|+.+++... .+... +.+.++++.+|+....+ .++.+|||||||||+||||
T Consensus 82 ~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKET-SYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-CChhhCChHHHHHHHHHHH
Confidence 235899999863 67778888876421 12222 34567899999986554 4789999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999988764 5799999999999999999999999999974 56666653
No 95
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-42 Score=331.20 Aligned_cols=203 Identities=30% Similarity=0.463 Sum_probs=179.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.+++++++++++| |+-.+++||||+|.+|++++|+||||||||||+|+|+|.++|++|+|.... +..
T Consensus 2 ~~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 2 TPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred Cceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 3689999999999 788999999999999999999999999999999999999999999998753 345
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc----------CC-----C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF----------NL-----P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~----------~~-----~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
|+.-||.+ .+|+.+|+.|++.... .. . .+++..+|+.+||.+..+. +.++||+|||+|
T Consensus 81 i~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-~A~~LsyG~qR~ 157 (250)
T COG0411 81 IARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRR 157 (250)
T ss_pred ceeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-hhhcCChhHhHH
Confidence 78889987 5999999999875321 00 1 2456778999999988775 889999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+.|||||+.+|++||||||.+||.+.....+.+.|.+. +.||++|.||+.++..+||||+||+.|+++ .+|++++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~e 236 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEE 236 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHH
Confidence 99999999999999999999999999999999888765 469999999999999999999999999987 6899988
Q ss_pred HHH
Q psy16366 538 YRE 540 (568)
Q Consensus 538 ~~~ 540 (568)
..+
T Consensus 237 V~~ 239 (250)
T COG0411 237 VRN 239 (250)
T ss_pred Hhc
Confidence 654
No 96
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-41 Score=374.56 Aligned_cols=204 Identities=28% Similarity=0.482 Sum_probs=179.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
+++|+++||+++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....+||++|++. +
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--L 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--C
Confidence 56899999999994267899999999999999999999999999999999999999999999877778999999874 6
Q ss_pred CCCCCHHHHHHHhc-----------------CCC--------------------------HHHHHHHHHhCCCCCccccC
Q psy16366 413 FPDDTPCEYLMKLF-----------------NLP--------------------------YEKSRRQLGMFGLPSYAHTI 449 (568)
Q Consensus 413 ~~~~~~~e~l~~~~-----------------~~~--------------------------~~~~~~~L~~~~l~~~~~~~ 449 (568)
++..|+.+++.... ... ...+..++..+|+.. . .+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W-DA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c-cC
Confidence 77788888764210 100 124556788999963 3 45
Q ss_pred CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 450 ~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
++.+|||||||||+|||+|+.+|++|||||||||||+.++..+.+.|+++++|||+||||++++..+|+++|+|++|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 78999999999999999999999999999999999999999999999999899999999999999999999999999998
Q ss_pred EEcCCHHHHHH
Q psy16366 530 KFNGDFDDYRE 540 (568)
Q Consensus 530 ~~~g~~~~~~~ 540 (568)
.+.|++++|.+
T Consensus 240 ~~~g~~~~~~~ 250 (556)
T PRK11819 240 PWEGNYSSWLE 250 (556)
T ss_pred EecCCHHHHHH
Confidence 78999998854
No 97
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.3e-41 Score=335.68 Aligned_cols=198 Identities=26% Similarity=0.417 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
++++||++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEe-CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4689999999 567899999999999999999999999999999999999999999997642 135899
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++|++ .+++..|+.+++... .+.. ...+..++..+++....+ .++.+|||||||||+|||||+.+|++||
T Consensus 80 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99986 377778998876532 2222 134567899999986555 4789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+|||+.+++.+.++|+++ +.|||+||||++.+..+|+++++|++|++. ..++.+++
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHh
Confidence 99999999999999999988764 569999999999999999999999999997 45666654
No 98
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.9e-41 Score=351.03 Aligned_cols=205 Identities=21% Similarity=0.307 Sum_probs=173.5
Q ss_pred CCCeEEEEeeEEEeCC------------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--
Q psy16366 332 PPPVLGLHDVTFGYPG------------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~------------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-- 397 (568)
..++|+++||++.|+. ...+++||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+..
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3578999999999942 24699999999999999999999999999999999999999999997642
Q ss_pred ------------CeeEEEEecCCCCCCCCCCCHHHHHHH---hc--CCCH----HHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 398 ------------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LF--NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 398 ------------~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~--~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
+.+|+|++|++...+++.+|+.+++.. .+ +.+. +.+.++|+.++|......+++.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 246999999985557888899887643 12 2332 34567899999964333457899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEc
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFN 532 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~ 532 (568)
||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+|+++++|.+|++++ .
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-L 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999998888654 6799999999999999999999999999976 3
Q ss_pred CCHHH
Q psy16366 533 GDFDD 537 (568)
Q Consensus 533 g~~~~ 537 (568)
|+.++
T Consensus 244 g~~~~ 248 (331)
T PRK15079 244 GTYDE 248 (331)
T ss_pred cCHHH
Confidence 55444
No 99
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.7e-41 Score=352.94 Aligned_cols=199 Identities=28% Similarity=0.388 Sum_probs=173.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..|+|++
T Consensus 2 ~L~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEe-CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998653 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc-------CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF-------NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~-------~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++ .+|+.+|+.+++.... ..+ .+.+.++|+.++|....+. ++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-YPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 996 4888999999875321 122 2356678999999876654 7899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i 224 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQV 224 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999888888654 5799999999999999999999999999975 4666664
No 100
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.2e-41 Score=333.49 Aligned_cols=198 Identities=28% Similarity=0.435 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeec-CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4689999999 567899999999999999999999999999999999999999999997643 235999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CC--CHHHHHHHHHhC-CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NL--PYEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~--~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
++|++ .+++..|+.+++.... .. ....+..+++.+ ++....+ .++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRK-QLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred ecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhh-CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99987 3777889988775321 11 122345677777 4665444 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|++.. .++.+++
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 9999999999999999999765 5699999999999999999999999999874 4665544
No 101
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-41 Score=344.49 Aligned_cols=202 Identities=31% Similarity=0.436 Sum_probs=170.7
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
.|+++||++.|++. +++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 37899999999532 4699999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCC--CccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~--~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+.+|||++|++...++ ..|+.+++... .+.+. +.+.++++.+||. ... .+++..|||||||||+|||||
T Consensus 82 ~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-cCCcccCCHHHHHHHHHHHHH
Confidence 2469999999754454 46888877531 23333 3456789999997 334 457899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVF 233 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999998754 5799999999999999999999999999974 57777653
No 102
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.5e-41 Score=353.69 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=174.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc--cEEEECC---------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK--GELRKSP---------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~--G~i~~~~---------~~~i~~ 403 (568)
.|+++||++.| ++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|.++. +..|||
T Consensus 5 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEE-CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 47899999999 56789999999999999999999999999999999999999999 9998653 246999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++|++. +|+.+|+.+++... .+.+. ..+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-LPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999974 88999999987532 22332 346778999999877664 789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc-----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY-----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||++||+.++..+.+.|.++ +.|+|+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~ 227 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALY 227 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999988887643 5799999999999999999999999999975 46666653
No 103
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=348.32 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=172.7
Q ss_pred CCCeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------
Q psy16366 332 PPPVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------- 397 (568)
++++|+++|++|.|++. .++|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 45789999999999532 3699999999999999999999999999999999999999999997642
Q ss_pred -----------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCC-CccccCCCC
Q psy16366 398 -----------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIR 452 (568)
Q Consensus 398 -----------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~-~~~~~~~~~ 452 (568)
+..++|++|++..+++. .|+.+++... .+.+. ..+.++++.+||. ...+ +++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~ 175 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE-RSPF 175 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc-CCcc
Confidence 23589999998555665 4888876431 12232 2456789999997 4444 4789
Q ss_pred CCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 453 ~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 579999999999999999999999999997
Q ss_pred EEcCCHHHHH
Q psy16366 530 KFNGDFDDYR 539 (568)
Q Consensus 530 ~~~g~~~~~~ 539 (568)
. .|+.+++.
T Consensus 256 ~-~g~~~~~~ 264 (320)
T PRK13631 256 K-TGTPYEIF 264 (320)
T ss_pred E-eCCHHHHh
Confidence 4 57776653
No 104
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=335.68 Aligned_cols=199 Identities=27% Similarity=0.393 Sum_probs=168.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
.|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSS-FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 47899999999 567899999999999999999999999999999999999999999997653 246999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
++|++. +++ .++.+++... .+.....+..+++.+++......+++.+|||||||||+|||||+.+|++||||||
T Consensus 82 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 82 VFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999874 554 5888876421 1222345678899999973333457899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|++||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++.. ++.+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 219 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY-AKTYDF 219 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe-CCHHHH
Confidence 9999999999999988764 67999999999999999999999999999754 555443
No 105
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5e-41 Score=334.29 Aligned_cols=200 Identities=30% Similarity=0.444 Sum_probs=170.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~ 404 (568)
+|+++|++++| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|+
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAY-GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 47899999999 5678999999999999999999999999999999999999999999976431 368999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++. ++...|+.+++... .+.. ...+.+++..+|+....+. ++.+|||||+|||+|||||+.+|+||||
T Consensus 80 ~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99864 66678888876432 1222 2345678999999876554 7899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||++||+.++..+.+.|.++ +.|||+||||++++.. |+++++|++|+++. .++.+++..
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~~ 221 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELRG 221 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHHH
Confidence 9999999999999999998764 5699999999999975 99999999999874 567666543
No 106
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.7e-41 Score=338.30 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=169.9
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 398 (568)
.++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+...
T Consensus 4 ~~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLY-GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEc-CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3589999999999 5678999999999999999999999999999999999999999999976432
Q ss_pred ------eeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 399 ------LRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 399 ------~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
..++|++|++...++...++.+++... +.. . ...+.++++.+++.......++.+|||||+|||+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 248999999754566666666554321 111 1 23456789999997422234789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||.+++..+|+++++|++|+++. .|+.+++
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 239 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE-SGLTDQV 239 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999988653 6799999999999999999999999999974 4666554
No 107
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.9e-41 Score=335.85 Aligned_cols=200 Identities=27% Similarity=0.401 Sum_probs=171.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i 401 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 ~l~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHF-GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEE-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 47899999999 567899999999999999999999999999999999999999999997643 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+|++|++. +++..|+.+++... .+... +.+.++++.+|+....+ +++.+|||||||||+|||||+.+|+
T Consensus 80 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-HYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-cChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999863 67778888876421 12222 34567899999986655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLI 224 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHh
Confidence 99999999999999999999998765 5799999999999999999999999999974 57776654
No 108
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=341.26 Aligned_cols=204 Identities=26% Similarity=0.333 Sum_probs=174.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 8 ~~~~l~i~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRV-PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEE-CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 45789999999999 567899999999999999999999999999999999999999999998754 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc----C----CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF----N----LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~----~----~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +++..++.+++.... . .. ...+..++..+++....+ +++.+|||||||||+|||||+
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 87 VAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred eEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCHHHHHHHHHHHHHh
Confidence 999999863 566778888775311 0 11 234667899999976554 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..++.+++.+
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELMR 237 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhcC
Confidence 999999999999999999999998888754 579999999999999999999999999996 4567776643
No 109
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.9e-41 Score=332.95 Aligned_cols=196 Identities=27% Similarity=0.378 Sum_probs=163.7
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|++. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999432 2799999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCC--CHH---H-HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNL--PYE---K-SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~--~~~---~-~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..++|++|++...+++..|+.+++.. ..+. ... . +.+++..+++.......++.+|||||||||+|||+|
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 236999999974346667888887642 1211 111 1 236788999963223347899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999999765 5799999999999999999999999999863
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.7e-41 Score=332.66 Aligned_cols=194 Identities=27% Similarity=0.328 Sum_probs=165.5
Q ss_pred CCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------
Q psy16366 333 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 397 (568)
+++|+++|+++.|+++ .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 3589999999999532 3599999999999999999999999999999999999999999997642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.++++.+++....+ +++..|||||||||+||||
T Consensus 84 ~~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHH
Confidence 136999999863 67778888876431 1222 245677899999986655 4689999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+.+|++|||||||+|||+.+...+.+.|.++ +.|||+||||.+++.. |+++++|++|+++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 99999999999999999999999999998654 5799999999999865 99999999999863
No 111
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.8e-41 Score=341.16 Aligned_cols=205 Identities=22% Similarity=0.291 Sum_probs=171.4
Q ss_pred CeEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------
Q psy16366 334 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------- 397 (568)
++|+++||+++|++ .+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999941 24799999999999999999999999999999999999999999997642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh--c--CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL--F--NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+..++|++|++...+++..++.+++... . ... .+.+.++++.+++.......++.+|||||||||+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 2359999998754456667777765321 1 122 2346778999999533334477999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++. ..++.+++.
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 999999999999999999999999999988764 579999999999999999999999999996 467776654
No 112
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.7e-41 Score=331.53 Aligned_cols=198 Identities=30% Similarity=0.409 Sum_probs=168.8
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
|+++||++.|+++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999432 6899999999999999999999999999999999999999999997643 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++. +++..|+.+++... .+.+. +.+.++++.++|....+. ++.+|||||+|||+|||||+.+|++|||
T Consensus 81 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-hhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 67778988876432 22222 345678999999865554 7899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||||++||+.+...+.+.|.++ +.|||++|||++++..+|+++++|++|+++. .++.++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~ 218 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQE 218 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHHH
Confidence 9999999999999999999876 3699999999999999999999999999974 455543
No 113
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=335.99 Aligned_cols=200 Identities=23% Similarity=0.389 Sum_probs=171.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~ 402 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEe-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 68999999999 567899999999999999999999999999999999999999999998653 24599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc----CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++|++. +++..|+.+++.... ... ...+.++++.+++....+ .++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh-cchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999863 677789988765321 112 234667899999986554 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.+ .+.|||++|||++++..+|+++++|++|+++. .++++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 225 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEIL 225 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHh
Confidence 999999999999999988887765 36799999999999999999999999999974 57777764
No 114
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.5e-41 Score=331.13 Aligned_cols=191 Identities=28% Similarity=0.416 Sum_probs=163.4
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|++. +++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999432 4799999999999999999999999999999999999999999997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++ .+++..|+.+++... .... .+.+.++++.+|+....+ +++.+|||||||||+|||+|+
T Consensus 81 ~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-HRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHh
Confidence 14599999986 367778998876431 1222 234667899999986655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++.. +|++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999998754 5799999999999965 7999999999874
No 115
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.4e-41 Score=331.12 Aligned_cols=196 Identities=29% Similarity=0.439 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------CeeEEEEecCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------RLRIGKFDQHS 408 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~i~~~~q~~ 408 (568)
|+++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. ...++|++|++
T Consensus 1 l~l~~v~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRF-GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 4689999999 567899999999999999999999999999999999999999999998654 23689999986
Q ss_pred CCCCCCCCCHHHHHHH---hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMK---LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
. +++..|+.+++.. ..+.....+.++++.+|+....+ .++.+|||||+||++||||++.+|++|||||||+|||
T Consensus 80 ~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 P--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred C--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 3 6777888887642 22445667888999999987665 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
+.+++.+.++|.++ +.|||+||||.+++..+|+++++|.+|++.. .|+..
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 209 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecChh
Confidence 99999999999765 4689999999999999999999999999975 45544
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.2e-41 Score=331.56 Aligned_cols=190 Identities=33% Similarity=0.508 Sum_probs=164.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 401 (568)
++++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 46899999995446899999999999999999999999999999999999999999997643 1358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++. +++..|+.+++... .+.. .+.+.++++.+++....+ .++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 99999874 77778998876532 1222 234667899999986655 46799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999765 57999999999999999999999999864
No 117
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=344.59 Aligned_cols=202 Identities=28% Similarity=0.384 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------
Q psy16366 336 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------- 398 (568)
Q Consensus 336 l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 398 (568)
++++||+++|++. .++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999532 46999999999999999999999999999999999999999999976431
Q ss_pred --eeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 399 --LRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 399 --~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
..|||++|++..+++. .|+.+++... .+.+. ..+.++++.+||......+++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 3599999997545664 5888876421 23332 245678999999743334578999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999988764 579999999999999999999999999997 457766653
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-41 Score=337.60 Aligned_cols=202 Identities=28% Similarity=0.457 Sum_probs=172.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 3 QPLLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred CceEEEeeEEEEE-CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 3589999999999 567899999999999999999999999999999999999999999998643 124
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-------------C---C--C----HHHHHHHHHhCCCCCccccCCCCCCCHhH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-------------N---L--P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 458 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-------------~---~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGq 458 (568)
++|++|++. +++..|+.+++.... + . . ...+.++++.+|+....+ .++.+|||||
T Consensus 82 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~ 158 (255)
T PRK11300 82 VVRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN-RQAGNLAYGQ 158 (255)
T ss_pred eEEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh-CChhhCCHHH
Confidence 888999864 778889988765310 0 0 0 124566788999976555 4789999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 459 kqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||||+||+||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++ ..++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~ 237 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGT 237 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCC
Confidence 99999999999999999999999999999999999988754 579999999999999999999999999997 4567
Q ss_pred HHHHH
Q psy16366 535 FDDYR 539 (568)
Q Consensus 535 ~~~~~ 539 (568)
.+++.
T Consensus 238 ~~~~~ 242 (255)
T PRK11300 238 PEEIR 242 (255)
T ss_pred HHHHh
Confidence 66654
No 119
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-41 Score=348.62 Aligned_cols=214 Identities=27% Similarity=0.337 Sum_probs=178.0
Q ss_pred CCeEEEEeeEEEeCC---------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------
Q psy16366 333 PPVLGLHDVTFGYPG---------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~---------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------ 397 (568)
+++|+++||++.|+. ...+|+||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+..
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999952 24799999999999999999999999999999999999999999997643
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
+.+|+|++|++...+++.+++.+.+... . +.. .+.+.++|+.+||......+++.+|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2469999999866688888887765421 1 222 23567889999997433345789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH-
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD- 536 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~- 536 (568)
|+|||||+.+|+|||+||||++||..++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++. |+.+
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~-g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK-GTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999999988654 67999999999999999999999999999864 4433
Q ss_pred -------HHHHHHHHHHh
Q psy16366 537 -------DYREKLLTSLG 547 (568)
Q Consensus 537 -------~~~~~~~~~~~ 547 (568)
.|.+.++..+.
T Consensus 242 ~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 242 IFNNPRHPYTQALLSATP 259 (327)
T ss_pred HhcCCCCHHHHHHHHhCC
Confidence 34555555543
No 120
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.5e-41 Score=333.37 Aligned_cols=192 Identities=28% Similarity=0.388 Sum_probs=165.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc-----CCCccEEEECC-------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGELRKSP------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~------------- 397 (568)
|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++.
T Consensus 1 i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEc-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4689999999 5678999999999999999999999999999999999999 99999997643
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCccccCC-CCCCCHhHHHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIP-IRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~~~~~~-~~~LSgGqkqRv~lA~al 468 (568)
+..++|++|++. ++ ..|+.+++... .+. . .+.+.++++.+|+.......+ +.+|||||||||+|||||
T Consensus 80 ~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 80 RRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred HhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHH
Confidence 235899999874 56 67988876431 121 1 234667899999987655433 589999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
+.+|++|||||||++||+.++..+.+.|.++. .|||+||||++++..+|+++++|++|+++..
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998763 5899999999999999999999999999753
No 121
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-41 Score=353.37 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=175.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEE
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIG 402 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~ 402 (568)
..++|+++|+++.| ++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|..+. +..||
T Consensus 16 ~~~~l~l~~v~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 16 LTPLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CCceEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35689999999999 567899999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|+||++. +|+.+|+.+++.... +.+. +.+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++|
T Consensus 95 ~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 95 MMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-KPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999974 899999999875321 2232 346678999999877664 78999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||++||..++..+.+.| ++.+.|+|+||||.+++..+||++++|++|++.. .|+.+++.
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~~~ 238 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPEEIY 238 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHHHHH
Confidence 999999999999988777555 4457899999999999999999999999999975 46666543
No 122
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-39 Score=392.34 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=164.7
Q ss_pred eEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC-------CeeE
Q psy16366 335 VLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP-------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~-------~~~i 401 (568)
+++++||++.|+ +.+.+|+|||++|++|++++|+|||||||||||++|+|..+ |++|+|..++ +..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 478999999994 24679999999999999999999999999999999999997 7889998754 3468
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHHhCCCCCccccCCCC----CCCHhHHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLGMFGLPSYAHTIPIR----DLSGGQKARVALAEL 467 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~------~~~~----~~~~~~L~~~~l~~~~~~~~~~----~LSgGqkqRv~lA~a 467 (568)
||++|++. +++..|+.|++.... ..+. +.+.++++.++|.+..+. .++ .|||||||||+||++
T Consensus 839 ~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCC-eeCCCCCCCCHHHhhHHHHHHH
Confidence 99999863 567889999875321 1222 345788999999876654 455 799999999999999
Q ss_pred HccCCC-eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHH-HHhhCceEEEEECC-eEEEEcCCH
Q psy16366 468 TLNNPD-ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERL-IRETDCELWALEKK-NIRKFNGDF 535 (568)
Q Consensus 468 l~~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-i~~~~~~i~~l~~g-~i~~~~g~~ 535 (568)
|+.+|+ ||||||||+|||..+...+.+.|+++ +.|||++|||++. +...+|++++|.+| +++. .|+.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~-~G~~ 988 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY-FGDL 988 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE-ECCc
Confidence 999997 99999999999999999999999765 5799999999986 45679999999997 8764 4543
No 123
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=372.45 Aligned_cols=203 Identities=32% Similarity=0.547 Sum_probs=177.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+|+++|++++| +++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+....+|+|++|++. ++.
T Consensus 1 ml~i~~ls~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~ 77 (530)
T PRK15064 1 MLSTANITMQF-GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFE 77 (530)
T ss_pred CEEEEEEEEEe-CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCC
Confidence 47899999999 567899999999999999999999999999999999999999999999887778999999863 667
Q ss_pred CCCHHHHHHHhc--------------C------------------------C-CHHHHHHHHHhCCCCCccccCCCCCCC
Q psy16366 415 DDTPCEYLMKLF--------------N------------------------L-PYEKSRRQLGMFGLPSYAHTIPIRDLS 455 (568)
Q Consensus 415 ~~~~~e~l~~~~--------------~------------------------~-~~~~~~~~L~~~~l~~~~~~~~~~~LS 455 (568)
..|+.+++.... . . ....+.++|..+|+.......++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 778877653210 0 0 013456789999997644445789999
Q ss_pred HhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH
Q psy16366 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF 535 (568)
Q Consensus 456 gGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~ 535 (568)
|||||||+||++|+.+|+||||||||+|||+.++..|.+.|.+.+.|||+||||++++..+|+++++|++|+++.+.|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999997788999
Q ss_pred HHHHH
Q psy16366 536 DDYRE 540 (568)
Q Consensus 536 ~~~~~ 540 (568)
++|.+
T Consensus 238 ~~~~~ 242 (530)
T PRK15064 238 DEYMT 242 (530)
T ss_pred HHHHH
Confidence 98853
No 124
>KOG0054|consensus
Probab=100.00 E-value=2.9e-39 Score=375.39 Aligned_cols=201 Identities=21% Similarity=0.305 Sum_probs=169.0
Q ss_pred CCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..-++++|++.+|.. ..++|+||||+|++||++||||..|||||||+++|..+..|.+|+|.+++ |.+
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 346999999999943 36799999999999999999999999999999999999999999998753 678
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
++.+||+|. +|.. |++.++--....+.+++.++|+..+|....... --.++|-||||.++|||||++
T Consensus 1216 lsIIPQdPv--LFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1216 LSIIPQDPV--LFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred CeeeCCCCc--eecC-ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 999999985 7765 666665433344667788887776654332221 136899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+++||+|||.|++.|+++-..+.+.|++. .+|||.|.|.++.+.. ||+|+||++|++++|+.+.+-
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHH
Confidence 99999999999999999999999999764 5799999999999987 699999999999998765433
No 125
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3e-41 Score=347.74 Aligned_cols=193 Identities=28% Similarity=0.416 Sum_probs=167.0
Q ss_pred EEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEecCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFDQHSGEHL 412 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~q~~~~~l 412 (568)
++| +++++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.. +..+||++|++. +
T Consensus 1 k~y-~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~ 77 (302)
T TIGR01188 1 KVY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--V 77 (302)
T ss_pred Cee-CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--C
Confidence 357 567899999999999999999999999999999999999999999998753 235999999864 7
Q ss_pred CCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 413 FPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 413 ~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
++.+|+.+++... .+... +.+.++++.++|....+ +++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 8888999887532 23332 34677899999987655 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+.++..+.++|.++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.+
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l~~ 213 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHH
Confidence 99999999999775 5799999999999999999999999999974 677777654
No 126
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=376.67 Aligned_cols=202 Identities=27% Similarity=0.511 Sum_probs=174.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+|.++||+++| +++++|+||||+|.+|+++||+||||||||||||+|+|+++|++|+|.+....+++|++|++.. +
T Consensus 1 ~i~i~nls~~~-g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~--~- 76 (638)
T PRK10636 1 MIVFSSLQIRR-GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA--L- 76 (638)
T ss_pred CEEEEEEEEEe-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC--C-
Confidence 47899999999 6788999999999999999999999999999999999999999999998877789999996421 1
Q ss_pred CCCHHHHHHH--------------------------h---c---C-C-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 415 DDTPCEYLMK--------------------------L---F---N-L-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 415 ~~~~~e~l~~--------------------------~---~---~-~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
..+..+++.. . . + . ....+..+|..+||......+++.+|||||||
T Consensus 77 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 77 PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 1333332210 0 0 0 0 12356778999999743334589999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+||++|+.+|+||||||||||||+.++.+|.+.|.++++|||+||||++++..+|+++|+|++|++..+.|+|+.|..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999864
No 127
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-42 Score=321.64 Aligned_cols=198 Identities=26% Similarity=0.339 Sum_probs=167.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-----cEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-----GELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-----G~i~~~~---------- 397 (568)
.+.++++||++.| |++.+|++||+.|+++.++||+||+|||||||||++..+..... |+|.+.+
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4678999999999 78999999999999999999999999999999999999887765 7776532
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
|.+||++||.|+ .|+ +++.+++.. ..+... +.+++.|....|.+. ....+...||||||||++|
T Consensus 84 ~~lRr~vGMVFQkPn--PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPN--PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCC--CCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 568999999986 566 899998753 334332 235556776666542 2223567899999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||||+.+|+|||||||||+|||.+...+.++|.+++ -|||+|||++.-+.+++|+.+++.+|+++++..+
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 999999999999999999999999999999998874 5999999999999999999999999999998543
No 128
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-41 Score=341.34 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=173.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
+++|+++||++.|++++++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.. +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 46899999999995356799999999999999999999999999999999999999999997653 13
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.+||++|++...++ ..|+.+++... .+.+. ..+..+++.+||....+ +++.+|||||+||++|||||+.+|
T Consensus 83 ~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 83 SVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred hEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCC
Confidence 58999998743344 46888877531 23332 34567889999987655 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..|+.+++.
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 230 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 230 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999998888754 579999999999999999999999999996 467777654
No 129
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-41 Score=335.74 Aligned_cols=200 Identities=28% Similarity=0.424 Sum_probs=172.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 397 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFY-GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEE-CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 47899999999 567899999999999999999999999999999999999999999997643
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++. +++..|+.+++.. ..+.. ...+.+++..+|+....+ +++..|||||||||+|||||+
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHh
Confidence 235899999874 7778899888742 12222 234567899999986655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|++|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|.+|+++ ..++.+++.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 999999999999999999999999998764 579999999999999999999999999997 457776653
No 130
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.9e-41 Score=330.17 Aligned_cols=187 Identities=35% Similarity=0.504 Sum_probs=159.9
Q ss_pred EEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 338 LHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 338 ~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
++|+++.| ++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 2 ~~~l~~~~-~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEec-CCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 68999999 45 6899999999999999999999999999999999999999999998653 2468999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++.. .+...|+.+++... .+.. ...+.++++.+++....+ +++..|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998632 23457888876432 1222 234667899999986554 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999765 4699999999999999999999999884
No 131
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-41 Score=342.66 Aligned_cols=202 Identities=30% Similarity=0.410 Sum_probs=170.1
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------ 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 398 (568)
+|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999422 46999999999999999999999999999999999999999999976431
Q ss_pred ---eeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHH
Q psy16366 399 ---LRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 399 ---~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
..++|++|++...++ ..|+.+++.. ..+... +.+.++++.+||. .... +++.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-CCcccCCHHHHHHHHHHHH
Confidence 358999998743455 4688887642 122222 3457789999997 3444 5789999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF 233 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999998865 469999999999999999999999999987 456666653
No 132
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.8e-41 Score=332.42 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEe-CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4689999999 567899999999999999999999999999999999999999999998642 235999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CCC-HHHHHHHHHhCC-CCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NLP-YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~~-~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
++|++. +++..|+.+++.... +.. .+.+.++++.++ +....+ .++.+|||||+|||+|||||+.+|++||||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 80 VPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLG-RRGGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred eccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999874 677789988775321 222 233466777776 444443 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|.++ +.|||+||||.+++..+|++++++++|+++. .++.++..
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~~ 220 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDELD 220 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHcC
Confidence 999999999999999998764 5799999999999999999999999999974 57776664
No 133
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7e-41 Score=334.46 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~------------~~~i 401 (568)
|+++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEE-CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4689999999 5678999999999999999999999999999999999995 79999998643 1238
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc---C-------CC----HHHHHHHHHhCCCCCccccCCCC-CCCHhHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF---N-------LP----YEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAE 466 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~---~-------~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqRv~lA~ 466 (568)
+|++|++. +++..|+.+++.... . .. .+.+.+++..+++......+++. .|||||||||+|||
T Consensus 80 ~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 89999874 677888888764211 0 11 13466789999997433234565 59999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+ |+++++|++|++. ..|+.+++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAK 233 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhc
Confidence 999999999999999999999999999999876 47999999999999998 8999999999996 457776554
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.1e-41 Score=338.89 Aligned_cols=203 Identities=27% Similarity=0.372 Sum_probs=170.7
Q ss_pred eEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------
Q psy16366 335 VLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------- 397 (568)
+|+++||++.|++ ++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6889999999942 36799999999999999999999999999999999999999999997643
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+..|+|++|++...+++..|+.+++.. ..... .+.+.++++.+|+.......++..|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 235999999874346667888887632 11222 23567789999996333345789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQL 238 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHHH
Confidence 99999999999999999999999999998888764 6799999999999999999999999999974 4666554
No 135
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-41 Score=342.43 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=170.2
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
.++++||++.|+++ +++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999532 3699999999999999999999999999999999999999999997643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..|||++|++...++. .|+.+++... .+.+. +.+.+++..+||.......++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 23689999987545665 4888876431 12332 34567899999973333347899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+|+++++|.+|+++. .|+.+++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS-QTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999998764 5799999999999999999999999999974 56766643
No 136
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-41 Score=333.52 Aligned_cols=198 Identities=29% Similarity=0.458 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++||++.| ++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEe-CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999 45 6799999999999999999999999999999999999999999997643 246899
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCC--ccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
++|++ .+++..|+.+++... .+.. .+.+.++++.+++.. ..+ .++.+|||||+|||+|||||+.+|++
T Consensus 80 ~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 80 VIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFAD-RYPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred EccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh-cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99986 377778998887432 2222 234667899999985 444 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||||++||+.+...+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9999999999999999999998764 5799999999999999999999999999974 4666555
No 137
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-42 Score=317.54 Aligned_cols=211 Identities=28% Similarity=0.412 Sum_probs=178.9
Q ss_pred eEEEEeeEEEeCCCce-eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~-il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~ 403 (568)
||++.+++++|+ ... +++||||++..|+++||+|||||||||+||+|++++.|++|.|...+ +.+||.
T Consensus 1 Ml~v~~l~K~y~-~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYG-SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred Ceeeeehhhhcc-CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 578999999994 454 89999999999999999999999999999999999999999998642 567999
Q ss_pred EecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++-. ..++..+|+.|++.. .+++.. .++.++.+.|+|....++ +...||.|+||||+|||||+++|++||
T Consensus 80 l~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-Rv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 80 LFGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred ecCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-HHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 8833 358999999998753 344443 345677889999988876 689999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH-HHHHHHHhhhh
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR-EKLLTSLGEAM 550 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~-~~~~~~~~~~~ 550 (568)
|||||||||+.+...+.+.+.+. +.+||++||++..++.+||+++++++|+++ +.|+.+.+. +...+.+.+.+
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~~~~~le~~f 233 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDARTVLRNLEEIF 233 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHHhhcCHHHHH
Confidence 99999999999999988888765 579999999999999999999999999997 567776654 33444444433
No 138
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4e-41 Score=329.52 Aligned_cols=189 Identities=26% Similarity=0.420 Sum_probs=163.8
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i~ 402 (568)
++++||++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++
T Consensus 1 l~~~~l~~~~-~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEE-CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4689999999 567899999999999999999999999999999999999999999997643 23589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++|++. +++..++.+++... .+... +.+.+++..+|+....+ +++.+|||||+|||+|||||+.+|++
T Consensus 80 ~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-hCccccCHHHHHHHHHHHHHhcCCCE
Confidence 9999874 67778998876431 12222 34567899999987655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
|||||||+|||+.++..+.+.|.++ +.|||++|||.+++..+|+++++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999865 56999999999999999999999999874
No 139
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=335.94 Aligned_cols=201 Identities=31% Similarity=0.391 Sum_probs=171.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 58899999999 567899999999999999999999999999999999999999999998643 135899
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc------c
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL------N 470 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~------~ 470 (568)
++|++. ++...|+.+++.... .. ....+..+++.++|....+ .++.+|||||||||+|||||+ .
T Consensus 81 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-RDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 999864 556679988875321 11 1234667899999986555 478999999999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..++.+++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHhC
Confidence 99999999999999999999999988754 469999999999999999999999999987 4577777643
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-41 Score=336.24 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=171.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+++++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEE-CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 58899999999 567899999999999999999999999999999999999999999998653 135999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-------cCC-C---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-------FNL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-------~~~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +++..|+.+++... ++. . ...+..++..+++....+ .++.+|||||+|||+||||++.+|
T Consensus 81 ~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence 999864 66677888876431 111 1 234667899999976555 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||+|||+.++..+.++|.++ +.|||++|||++++.++|+++++|++|+++ ..++.+++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhc
Confidence 999999999999999999999998764 579999999999999999999999999987 457777764
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=334.14 Aligned_cols=202 Identities=25% Similarity=0.354 Sum_probs=169.3
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
++|+|+++||+++| +++++|+|+||+|.+|++++|+|||||||||||++|+|++. |++|+|.++.
T Consensus 3 ~~~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 3 SPPKMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CCcEEEEeeeEEEE-CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999999 56789999999999999999999999999999999999864 5899997643
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++ .|+.+++... .+. . .+.+..+++.+++... ...+++.+|||||||||
T Consensus 82 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 82 VVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 236999999873 566 4888876432 122 1 2345677888988531 22346899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999999876 4699999999999999999999999999974 5666655
No 142
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.3e-40 Score=334.56 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=168.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC---------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------------- 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 398 (568)
++|+++||++.| ++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++..
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEe-CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 579999999999 5667999999999999999999999999999999999999999999976421
Q ss_pred -----eeEEEEecCCCCCCCCCCCHHHHHHHh---cC-C----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 399 -----LRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-L----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 399 -----~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
..++|++|++...++...++.+++... .. . ..+.+.++++.+++.......++..|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 248999998743445555665554211 11 1 1245677899999974233347899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++.
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~~ 237 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQVL 237 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999999999998888653 6799999999999999999999999999974 46665553
No 143
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=337.68 Aligned_cols=203 Identities=29% Similarity=0.461 Sum_probs=172.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~ 402 (568)
.+++++||+++|++.+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+... ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 36899999999954557999999999999999999999999999999999999999999986431 3589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++...++ ..|+.+++... .+... +.+.++++.+++....+. ++..|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-VPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999743344 46888877421 12332 235678999999866554 78999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.+...+.++|+++ +.|||++|||++++.++|+++++|++|+++ ..|+.+++.
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 226 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF 226 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence 999999999999999999988754 579999999999999999999999999997 457777764
No 144
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-41 Score=339.05 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=168.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i 401 (568)
||+++||+++| +++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+
T Consensus 1 ml~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEc-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 47899999999 567899999999999999999999999999999999999999999997643 1358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++...++ ..++.+++.. ..+... +.+..+++.+|+.+..+ +++.+|||||||||+|||+|+.+|+|
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-QPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-CCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998742233 3466665432 122222 23567899999987655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999998765 5699999999999999999999999999874 56766653
No 145
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-41 Score=326.98 Aligned_cols=189 Identities=26% Similarity=0.375 Sum_probs=162.6
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
+.++|+++.| +++. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 i~~~~l~~~~-~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSY-GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEe-CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 4689999999 4443 399999999999999999999999999999999999999998653 235999999
Q ss_pred CCCCCCCCCCCHHHHHHHhcC--C-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFN--L-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~--~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++..... . ....+.++++.+++....+. ++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-LPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 874 6777899988753211 1 12356778999999866554 789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 99999999999999998754 5799999999999999999999999999863
No 146
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=345.58 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=169.8
Q ss_pred CeEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC----CCccEEEECC---------
Q psy16366 334 PVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT----PNKGELRKSP--------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~--------- 397 (568)
++|+++||++.|+ +...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 4799999999994 23569999999999999999999999999999999999997 5889998643
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh---c---C---CC----HHHHHHHHHhCCCCCcc--ccCCCCCCCH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F---N---LP----YEKSRRQLGMFGLPSYA--HTIPIRDLSG 456 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~---~---~~----~~~~~~~L~~~~l~~~~--~~~~~~~LSg 456 (568)
+..|+|++|++...+++.+++.+.+... . + .. .+.+.++|+.+||.... ...++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1259999999865677888887765421 1 1 01 23567889999997532 2346899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEc
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFN 532 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~ 532 (568)
||+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++ .
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-T 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999999988763 6799999999999999999999999999975 3
Q ss_pred CCHHH
Q psy16366 533 GDFDD 537 (568)
Q Consensus 533 g~~~~ 537 (568)
|+.++
T Consensus 241 g~~~~ 245 (330)
T PRK15093 241 APSKE 245 (330)
T ss_pred CCHHH
Confidence 44433
No 147
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=331.13 Aligned_cols=201 Identities=22% Similarity=0.289 Sum_probs=169.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 4 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEee-CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 589999999999 567899999999999999999999999999999999999999999997643 2359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCC----HHHHHHHHHhC-CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLP----YEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~----~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+|++|++. +++..|+.+++.... ... ...+.++++.+ ++....+ .++.+|||||||||+|||||+.+|+||
T Consensus 83 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 83 AIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999864 677789988775321 111 12345567777 4654444 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||++||+.++..+.+.|.++ +.|||++|||++++.++||++++|++|+++ ..|+.++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 999999999999999999988754 579999999999999999999999999997 457777664
No 148
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.3e-40 Score=331.73 Aligned_cols=199 Identities=24% Similarity=0.324 Sum_probs=169.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~------------ 397 (568)
+++++||+++| ++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++.
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEE-CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 47899999999 5668999999999999999999999999999999999999998 99997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC-CC----HHHHHHHHHhCCCC----CccccCCCCCCCHhHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LP----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~~----~~~~~~~L~~~~l~----~~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+ .. .+.+..+++.+|+. .... .++.+|||||||||+|
T Consensus 80 ~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 80 LRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLH-DSALGLSGGQQQRLCI 155 (247)
T ss_pred HHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhh-CCcccCCHHHHHHHHH
Confidence 235999999864 666 8888877532 12 12 13456789999997 4443 4789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++.+..+||++++|++|++.. .++.+++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999875 3699999999999999999999999999974 46666553
No 149
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.3e-40 Score=334.43 Aligned_cols=199 Identities=30% Similarity=0.447 Sum_probs=170.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------------ 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------------ 397 (568)
++++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEe-CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4689999999 567899999999999999999999999999999999999999999987542
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++ .+++..|+.+++... .+... ..+.++++.+|+....+ .++.+|||||+|||+
T Consensus 80 ~~~~~~~~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHH
Confidence 23599999986 377778998877531 12222 34667899999986555 467999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999999988754 5799999999999999999999999999974 56766653
No 150
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=328.38 Aligned_cols=200 Identities=29% Similarity=0.380 Sum_probs=170.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+++++||+++|+ +.. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 ~l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 478999999994 433 499999999999999999999999999999999999999998653 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc--CC--C---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF--NL--P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~--~~--~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+++..|+.+++.... .. . ...+.++++.+|+....+ +++..|||||||||+||||++.+|++||||
T Consensus 78 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred ccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 986 3777789988875321 11 1 234677899999986555 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
|||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|.+|++. ..|+.+++.+.
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~~ 220 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLSG 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 999999999999999988754 569999999999999999999999999997 56788777643
No 151
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=337.41 Aligned_cols=202 Identities=30% Similarity=0.487 Sum_probs=171.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i 401 (568)
+|.++||++.|++.+++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++. +..|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999995456799999999999999999999999999999999999999999997643 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++...++ ..|+.+++... .+... +.+.++++.++|.+..+ +++.+|||||+||++|||||+.+|++
T Consensus 81 ~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998743344 35888876421 12222 34667899999987665 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVF 225 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999865 5799999999999999999999999999974 57777764
No 152
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-40 Score=325.43 Aligned_cols=192 Identities=28% Similarity=0.439 Sum_probs=165.7
Q ss_pred CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeE
Q psy16366 330 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRI 401 (568)
Q Consensus 330 ~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i 401 (568)
..++++|.++|++++| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 6 ~~~~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 6 HTAPPLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred CCCcceEEEeeEEEec-CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 3456789999999999 567899999999999999999999999999999999999999999998754 2348
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++|++. +++..|+.+++... .+. ..+.++.++..+++..... .++..|||||||||+|||+++.+|++|||
T Consensus 85 ~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 85 AYLGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-TLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred EEeecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999763 67777888876432 122 2345677899999987654 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
||||++||+.+++.+.+.|.++ +.|||++|||.+++.++|+++|++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999765 68999999999999999999999863
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=335.74 Aligned_cols=201 Identities=28% Similarity=0.346 Sum_probs=172.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..|+++||+++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++
T Consensus 6 ~~l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEE-CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 478999999999 567899999999999999999999999999999999999999999998653 13589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cC-------CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FN-------LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~-------~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. ++...++.+++... .. .. ...+..+++.+++....+ +++.+||||||||++||||++.+
T Consensus 85 ~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 85 LLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred EeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCChHHHHHHHHHHHHhcC
Confidence 9999874 66677888876431 10 11 234667899999986554 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999988764 5699999999999999999999999999874 57776654
No 154
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=337.86 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=169.8
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRI 401 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i 401 (568)
.++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 26 ~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKT-GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhc-CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 467999999 678899999999999999999999999999999999999999999997642 1369
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++. +++..|+.+++... .+.. .+.+.++++.++|....+ +++.+|||||||||+|||||+.+|+|
T Consensus 105 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999863 67778998877532 1222 234667899999986655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 249 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEIL 249 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999988765 5799999999999999999999999999974 46666654
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=337.97 Aligned_cols=203 Identities=30% Similarity=0.416 Sum_probs=169.2
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
.|+++||++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 37899999999532 3699999999999999999999999999999999999999999997643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..|+|++|++...++. .|+.+++... .+... ..+.++++.++|......+++.+|||||||||+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 13589999986334554 5888876421 22332 23567788999974333457899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999998765 5799999999999999999999999999874 46666653
No 156
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.2e-40 Score=343.26 Aligned_cols=215 Identities=25% Similarity=0.360 Sum_probs=177.0
Q ss_pred CCCeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECCC-------
Q psy16366 332 PPPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSPR------- 398 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------- 398 (568)
..++|+++|+++.|+. ...+++||||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 4578999999999942 246999999999999999999999999999999999999996 999986531
Q ss_pred --------eeEEEEecCCCCCCCCCCCHHHHHHH---hc-CCCH----HHHHHHHHhCCCCCcc--ccCCCCCCCHhHHH
Q psy16366 399 --------LRIGKFDQHSGEHLFPDDTPCEYLMK---LF-NLPY----EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKA 460 (568)
Q Consensus 399 --------~~i~~~~q~~~~~l~~~~~~~e~l~~---~~-~~~~----~~~~~~L~~~~l~~~~--~~~~~~~LSgGqkq 460 (568)
..|+|++|++...+++.+++.+++.. .. +... +.+.++|+.++|+... ....+.+|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 36999999986668888888776542 12 2332 3456789999997521 23467999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
||+|||||+.+|+|||+||||++||+.++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++. |+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-GNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHH
Confidence 999999999999999999999999999999998888654 67999999999999999999999999999864 4443
Q ss_pred --------HHHHHHHHHHh
Q psy16366 537 --------DYREKLLTSLG 547 (568)
Q Consensus 537 --------~~~~~~~~~~~ 547 (568)
.|.+.++..+.
T Consensus 248 ~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 248 DVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred HHHhCCCCHHHHHHHHhCC
Confidence 35555655543
No 157
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-40 Score=349.07 Aligned_cols=198 Identities=25% Similarity=0.334 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Cee
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLR 400 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ 400 (568)
++..++...| +...+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3344444444 334589999999999999999999999999999999999999999998643 136
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +|+..|+.+++... .+... +.+.++|+.+||....+. ++.+|||||||||+|||||+.+|+
T Consensus 108 igyv~Q~~~--l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-~~~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 108 IAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-YPDELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred EEEEECCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-CcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999874 78888999987532 23332 346678999999876654 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~~l 252 (400)
T PRK10070 185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPDEI 252 (400)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHHHH
Confidence 99999999999999999999988654 5799999999999999999999999999974 5666554
No 158
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.6e-40 Score=333.17 Aligned_cols=200 Identities=27% Similarity=0.356 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 2 l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSA-GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 5789999999 567899999999999999999999999999999999999999999998753 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh-------cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL-------FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~-------~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+|++. ++...|+.+++... .... .+.+.++++.+++....+ .++..|||||+|||+|||||+.+|+
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99873 55667888877431 1111 134667899999976555 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||||||++||+.++..+.++|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 226 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVLT 226 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhhC
Confidence 99999999999999999999999866 579999999999999999999999999987 4577777643
No 159
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-41 Score=320.31 Aligned_cols=202 Identities=27% Similarity=0.459 Sum_probs=182.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------CeeEEEEecC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------RLRIGKFDQH 407 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~i~~~~q~ 407 (568)
.|++++|+++| +++.+++|+||++++|++.|++|||||||||.+|+|.|++.|++|+|.++. ..+|||+|-.
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 58899999999 889999999999999999999999999999999999999999999999875 3589999987
Q ss_pred CCCCCCCCCCHHHHH---HHhcCCCHHH----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 408 SGEHLFPDDTPCEYL---MKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l---~~~~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
. .+++.+|+.+.+ ....+.+.++ +..||+++++..+... ++.+||-|++|++.+..+++++|+++|||||
T Consensus 81 R--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~-kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 R--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred h--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccc-hHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 6 499999998854 4556777654 4578999999988764 8999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
||||||-+.+.|.+++.++ +.|||++||.++-++++||++++|.+|+.+ +.|+..+.++.
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~ 220 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRS 220 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHh
Confidence 9999999999999988654 789999999999999999999999999987 57998888774
No 160
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.8e-40 Score=366.30 Aligned_cols=204 Identities=29% Similarity=0.485 Sum_probs=177.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
++++++||+++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....|||++|++. ++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LD 80 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--CC
Confidence 4799999999994267899999999999999999999999999999999999999999999877778999999874 67
Q ss_pred CCCCHHHHHHHhc-----------------CCC-H-------------------------HHHHHHHHhCCCCCccccCC
Q psy16366 414 PDDTPCEYLMKLF-----------------NLP-Y-------------------------EKSRRQLGMFGLPSYAHTIP 450 (568)
Q Consensus 414 ~~~~~~e~l~~~~-----------------~~~-~-------------------------~~~~~~L~~~~l~~~~~~~~ 450 (568)
+..|+.+++.... ... . ..+..++..+|+.. . ..+
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~ 158 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-DAD 158 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-cCc
Confidence 7788888764210 000 1 12345677788853 3 357
Q ss_pred CCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 451 ~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.+|||||||||+|||+|+.+|++|||||||||||+.++..|.+.|.++++|||+||||++++..+|+++++|++|+++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 238 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999999998899999999999999999999999999887
Q ss_pred EcCCHHHHHHH
Q psy16366 531 FNGDFDDYREK 541 (568)
Q Consensus 531 ~~g~~~~~~~~ 541 (568)
+.|++++|.+.
T Consensus 239 ~~g~~~~~~~~ 249 (552)
T TIGR03719 239 WEGNYSSWLEQ 249 (552)
T ss_pred ecCCHHHHHHH
Confidence 89999987653
No 161
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=329.55 Aligned_cols=202 Identities=26% Similarity=0.308 Sum_probs=170.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++++++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEE-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 368999999999 567899999999999999999999999999999999999974 699997643
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 465 (568)
+..|+|++|++. +++..|+.+++.... .. . .+.+.++++.+++... ....++.+|||||||||+||
T Consensus 81 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 81 RRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred hccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 246999999874 567789988874321 11 1 1345678999998531 22357899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++. ..|+.+++.
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF 233 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence 9999999999999999999999999999999875 479999999999999999999999999986 457776654
No 162
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-40 Score=336.35 Aligned_cols=202 Identities=28% Similarity=0.391 Sum_probs=170.1
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.. +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 47899999999953 24699999999999999999999999999999999999999999997643 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. .++...|+.+++... .+.+. ..+.++++.+||.+..+ +++.+|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999873 244567888877432 22332 34677899999987655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.++..+.++|.++ +.|||+||||++++. .|+++++|++|+++. .|+.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999988754 579999999999994 799999999999874 57766643
No 163
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=335.22 Aligned_cols=201 Identities=31% Similarity=0.451 Sum_probs=168.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~ 402 (568)
+++++|+++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995456799999999999999999999999999999999999999999997642 13589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++... +...|+.+++... .+.+ .+.+..+++.+|+....+ .++..|||||+|||+|||||+.+|+||
T Consensus 81 ~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhh-cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999987433 3446888876431 1222 234567899999987665 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.++..+.++|.++ +.|||++|||++.+. .|+++++|++|+++ ..|+.+++.
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999998754 579999999999995 69999999999997 457766653
No 164
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.1e-40 Score=347.10 Aligned_cols=191 Identities=27% Similarity=0.385 Sum_probs=165.7
Q ss_pred EeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEEecCC
Q psy16366 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKFDQHS 408 (568)
Q Consensus 344 ~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~~q~~ 408 (568)
.| +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++. +..++|++|++
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46 677899999999999999999999999999999999999999999998643 34799999987
Q ss_pred CCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
.+|+.+|+.+++... .+.+. +.+.++|+.+||..+.+. ++.+|||||||||+|||||+.+|+||||||||
T Consensus 81 --~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 --ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-YPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred --cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 488999999887532 23332 446778999999876654 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 482 NNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++||+.++..+.+.|.++ +.|||+||||++++..+|++|++|++|+++. .|+++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~ 218 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEIL 218 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHH
Confidence 999999999999988654 6799999999999999999999999999975 46666543
No 165
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-40 Score=331.06 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=169.3
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++|+++|+++.| +++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 9 ~~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 9 AQPQIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred cceeEEEeeeEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35689999999999 567899999999999999999999999999999999999985 799987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+... ..+.++++.+++.. .....++.+|||||+|||+
T Consensus 88 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 VVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 235899999874 566 7888877532 23332 23567889898842 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|++.. .|+.+++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 240 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQI 240 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999875 4799999999999999999999999999974 4666654
No 166
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-40 Score=330.10 Aligned_cols=202 Identities=24% Similarity=0.270 Sum_probs=168.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+..
T Consensus 5 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEe-CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 4589999999999 567899999999999999999999999999999999999997 489987632
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. ++. .|+.+++... .+. . .+.+..++..+++.. .....++.+|||||||||+
T Consensus 84 ~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPN--PFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeeccc--ccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 235999999874 453 7888877432 121 1 234566788888731 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999974 46666553
No 167
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-40 Score=332.17 Aligned_cols=203 Identities=24% Similarity=0.318 Sum_probs=168.2
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
+.++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++.
T Consensus 18 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYY-GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEe-CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35689999999999 56789999999999999999999999999999999999864 7899987542
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++. |+.+++... ... . .+.+...+..+++.. .....++.+|||||||||
T Consensus 97 ~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPN--PFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 236999999874 5554 888876532 111 1 123556788888752 122347899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||+.+|++|||||||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|+++. .++.+++.
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 251 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQIF 251 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 4699999999999999999999999999974 46666553
No 168
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-40 Score=334.96 Aligned_cols=203 Identities=29% Similarity=0.418 Sum_probs=171.3
Q ss_pred CCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.++|+++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ +..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 468999999999953 35799999999999999999999999999999999999999999997653 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|+|++|++. .++...|+.+++... .+.+. ..+..++..+||...... ++..|||||||||+|||||+.+|+
T Consensus 83 i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 83 VGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNR-EPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred eEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCC
Confidence 999999873 244557888877432 22232 346778999999876654 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++. .|+++++|.+|+++ ..|+.++..
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999764 569999999999997 49999999999986 456666543
No 169
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-40 Score=341.11 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=168.6
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC----CccEEEECCC---------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGELRKSPR--------- 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~~--------- 398 (568)
+|+++||++.|++. ..+|+||||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999432 4699999999999999999999999999999999999974 8899976431
Q ss_pred ------eeEEEEecCCCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHHhCCCCCc--cccCCCCCCCHhHHHHH
Q psy16366 399 ------LRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARV 462 (568)
Q Consensus 399 ------~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~----~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkqRv 462 (568)
..|+|++|++...+++.+++.+.+... .+.. .+.+.++|+.+||... ...+++.+|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 259999999865678888876654321 1222 2446788999999742 22347899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++. |+.++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~~~~ 240 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GKAHD 240 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 9999999999999999999999999999999988764 57999999999999999999999999999864 44433
No 170
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=336.44 Aligned_cols=203 Identities=24% Similarity=0.308 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------
Q psy16366 334 PVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------ 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 397 (568)
..|+++|+++.|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 458999999999432 2599999999999999999999999999999999999999999987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+..|+|++|++...++. .|+.+++... .+... ..+..+++.++|+.....+++.+|||||||||+|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 23589999987433443 4787776421 12222 235568899999532334578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEI 238 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999888754 5799999999999999999999999999874 4666664
No 171
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=329.46 Aligned_cols=202 Identities=25% Similarity=0.332 Sum_probs=168.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 397 (568)
.++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|..+.
T Consensus 11 ~~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYY-GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEe-CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 4679999999999 56789999999999999999999999999999999999986 5899987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+.+++|++|++. +++ .|+.+++... . +.+. +.+.++++.+++.. .....++.+|||||+|||+
T Consensus 90 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 236999999874 555 6888876432 1 2222 34567888998742 1223467899999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999975 46666653
No 172
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=2.7e-39 Score=331.15 Aligned_cols=323 Identities=23% Similarity=0.306 Sum_probs=214.3
Q ss_pred CCChHHHHHHHHHhcCCCc----cCCCch-H------------HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 177 ADAAEPRARRILAGLGFTT----IYIPSS-R------------VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 177 ~~~~~~~~~~~L~~lg~~~----L~~ePn-~------------L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
..+++.-+|.+++..-... +||||. | +.++.+. +++||||+||+..|+-++|-|-++...
T Consensus 213 ~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG~-- 289 (591)
T COG1245 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYGE-- 289 (591)
T ss_pred hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEecC--
Confidence 3455555555554332222 899993 3 3344444 789999999999999988877666432
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccc
Q psy16366 240 FYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 319 (568)
Q Consensus 240 ~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (568)
.|-|..+...+.- +.....| .+- ..++-.-+.+.+
T Consensus 290 ---pg~YGvvs~p~sv--r~gIN~y----------------------------L~G------------yl~~EN~R~R~~ 324 (591)
T COG1245 290 ---PGVYGVVSKPKSV--RVGINEY----------------------------LKG------------YLPEENVRFRPE 324 (591)
T ss_pred ---CccceEeccchHH--HHHHHHH----------------------------Hhc------------cCchhccccccc
Confidence 3444433221110 0000100 000 000000011222
Q ss_pred eeeeecCCCCCC-C-CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC
Q psy16366 320 IVKFRFPNPPYL-P-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397 (568)
Q Consensus 320 ~~~~~~~~~~~~-~-~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 397 (568)
...|...++... . ..+++..++++.| ++ .-|.-=.=+|..||+++++||||.|||||.++|+|.++|++|. ..
T Consensus 325 ~I~F~~~~~~~~~~~~~lv~y~~~~k~~-g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~ 399 (591)
T COG1245 325 EIEFEEKPPRDDKARDTLVEYPDLKKTY-GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EE 399 (591)
T ss_pred ceeeeccCcccccccceeeecchheeec-Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---Cc
Confidence 344444333221 2 4567777888888 33 3344444567788999999999999999999999999999998 55
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHhcC--C-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~--~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
..+++|-||--.. ..+.|+.+++..... . +..-..+++.-+.|+....+ ++..|||||.|||+||.+|.++++|
T Consensus 400 ~~~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~-~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 400 DLKVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLER-PVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred cceEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhc-ccccCCchhHHHHHHHHHhccccCE
Confidence 6789999986532 245688887764322 1 11223456778888876664 8999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECC--eEEEEcC--CHHHHHHHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKK--NIRKFNG--DFDDYREKLLTSL 546 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g--~i~~~~g--~~~~~~~~~~~~~ 546 (568)
+|||||+++||.+.+-.+.+.|+++ +.|.++|-||+.++..++|++++++.- .--...+ +..+=.+.+++.+
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHc
Confidence 9999999999999988888888765 679999999999999999999998732 1111122 2334457788888
Q ss_pred hhhhhcCCc
Q psy16366 547 GEAMVYNPS 555 (568)
Q Consensus 547 ~~~~~~~~~ 555 (568)
+..+..+|.
T Consensus 557 ~vTFRRD~~ 565 (591)
T COG1245 557 GVTFRRDPE 565 (591)
T ss_pred CcEEecCcc
Confidence 877754443
No 173
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7e-40 Score=360.91 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=176.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++|+++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..
T Consensus 9 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEe-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3589999999999 567899999999999999999999999999999999999999999998653 135
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCC---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
++|++|++. +++..|+.+++...... ..+.+.++++.+++....+ +++.+|||||||||+|||||+.+|+||||
T Consensus 88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-SSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999874 77888999987532211 1345678899999986655 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++ ..|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 228 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS 228 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence 9999999999999999998765 579999999999999999999999999997 468887774
No 174
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-39 Score=327.60 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=169.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC----CccEEEECC---------Cee
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGELRKSP---------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~---------~~~ 400 (568)
.+|+++||+++| + +++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|..+. +..
T Consensus 3 ~~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 3 QQIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred cEEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 368999999999 3 5799999999999999999999999999999999999999 999998643 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHH---hcCC--CHHHHHHHHHhCCCCCc--cccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMK---LFNL--PYEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~---~~~~--~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++...+.+..++.++... ..+. ..+.+.++++.+++... ....++.+|||||+|||+|||||+.+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 999999974334455666655432 1222 23457788999999762 1234789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.+...+.++|.++ +.|||+||||++.+..+|+++|+|++|+++. .++.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 229 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVETLF 229 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999998888764 5799999999999999999999999999974 56666653
No 175
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=327.94 Aligned_cols=202 Identities=24% Similarity=0.277 Sum_probs=169.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYY-GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEe-CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 478999999999 567899999999999999999999999999999999999987 499997642
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++..|+.+++... .+. .. ..+..+++.+++... ....++.+|||||||||+
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 235899999864 67778998877532 121 21 235677888887531 223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999974 56666653
No 176
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.6e-38 Score=378.45 Aligned_cols=197 Identities=24% Similarity=0.318 Sum_probs=163.1
Q ss_pred eEEEEeeEEEeC------------CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECC---
Q psy16366 335 VLGLHDVTFGYP------------GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSP--- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~------------~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~--- 397 (568)
.+.++||++.++ +.+.+|+|||+.|++|++++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 588999998873 124699999999999999999999999999999999999763 689998753
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh--c----CCCH----HHHHHHHHhCCCCCccccCCC-----CCCCHh
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL--F----NLPY----EKSRRQLGMFGLPSYAHTIPI-----RDLSGG 457 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~----~~~~----~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 457 (568)
+..+||++|++. +++..|+.|.+... . ..+. +.+.++++.++|.+..+. .+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~-~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDA-IVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCC-ccCCCCCCCcCHH
Confidence 235899999863 67889999987531 1 1222 236678999999876554 33 589999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEEC-CeEEEEc
Q psy16366 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEK-KNIRKFN 532 (568)
Q Consensus 458 qkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~-g~i~~~~ 532 (568)
|||||+||++|+.+|+||+|||||+|||..+...+++.|+++ +.|||++||+++ .+.+.+|++++|.+ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999999999775 679999999998 47788999999997 7776 45
Q ss_pred CCH
Q psy16366 533 GDF 535 (568)
Q Consensus 533 g~~ 535 (568)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 553
No 177
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=328.73 Aligned_cols=202 Identities=26% Similarity=0.346 Sum_probs=169.0
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|+++| ++|+|.+..
T Consensus 16 ~~~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEE-CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 45689999999999 567899999999999999999999999999999999999975 899997543
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +++. |+.+++... .+. . ...+..+++.+++... ....++.+||||||||
T Consensus 95 ~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 95 VVELRARVGMVFQKPN--PFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred hHHHhhceEEEecCCC--CCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 235899999874 5554 888876431 121 1 2345678999999641 2234689999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKM 249 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999999876 4699999999999999999999999999974 4666655
No 178
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-39 Score=366.68 Aligned_cols=201 Identities=30% Similarity=0.565 Sum_probs=171.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+|+++||+++| +++++|+||||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.....++|++|.+.. ..
T Consensus 3 ~l~i~~ls~~~-~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~--~~ 79 (635)
T PRK11147 3 LISIHGAWLSF-SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR--NV 79 (635)
T ss_pred EEEEeeEEEEe-CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC--CC
Confidence 78999999999 6678999999999999999999999999999999999999999999998876678999886531 11
Q ss_pred CCCHHHHHH------------------------------H---h---c----CC-CHHHHHHHHHhCCCCCccccCCCCC
Q psy16366 415 DDTPCEYLM------------------------------K---L---F----NL-PYEKSRRQLGMFGLPSYAHTIPIRD 453 (568)
Q Consensus 415 ~~~~~e~l~------------------------------~---~---~----~~-~~~~~~~~L~~~~l~~~~~~~~~~~ 453 (568)
..++.+++. . . . +. ....+..+|..+||.. .+++.+
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~ 156 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSS 156 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhh
Confidence 122222210 0 0 0 00 1235677899999963 457899
Q ss_pred CCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcC
Q psy16366 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 533 (568)
Q Consensus 454 LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g 533 (568)
|||||||||+|||+|+.+|+||||||||||||+.++.+|.+.|.++++|||+||||++++..+|+++|+|++|+++.+.|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CHHHHHHH
Q psy16366 534 DFDDYREK 541 (568)
Q Consensus 534 ~~~~~~~~ 541 (568)
+|++|.+.
T Consensus 237 ~~~~~~~~ 244 (635)
T PRK11147 237 NYDQYLLE 244 (635)
T ss_pred CHHHHHHH
Confidence 99988643
No 179
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=342.18 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=168.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
+|++ ||+++| +++. + |+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +.
T Consensus 1 ~l~~-~l~k~~-~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQL-GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEe-CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4677 999999 5543 3 99999999999999999999999999999999999999997532 24
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
.++|++|++ .+|+.+|+.+++.... ....+.+.++++.+||....+ +++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 699999987 4788899999875322 223456778999999987665 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~ 217 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVW 217 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHH
Confidence 999999999999999888754 5799999999999999999999999999975 46666543
No 180
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.1e-39 Score=330.51 Aligned_cols=203 Identities=27% Similarity=0.363 Sum_probs=169.5
Q ss_pred CeEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------
Q psy16366 334 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------- 397 (568)
++|+++||++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47899999999952 46899999999999999999999999999999999999999999997643
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++...+++..++.+++... .+... ..+.+++..+|+.......++..|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 2369999998744466677887765321 12222 246778999999643334578999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .|+.++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~ 238 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE-TQPVGD 238 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee-eCChhh
Confidence 999999999999999999999999999988888654 5799999999999999999999999999874 455444
No 181
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8e-40 Score=323.29 Aligned_cols=187 Identities=30% Similarity=0.430 Sum_probs=160.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
+++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 5 ~~~i~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLA-GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEee-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4689999999999 567899999999999999999999999999999999999999999998653 2468
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
+|++|++. +++ .|+.+++... ... ....+..+++.+++.......++.+|||||+|||+|||+|+.+|++||
T Consensus 84 ~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999864 555 4888876421 121 234566889999996433345789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
|||||++||+.++..+.++|.++ +.|||+||||.+++. .|+++++|+
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 99999999999999999988765 569999999999996 699999996
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.9e-40 Score=319.94 Aligned_cols=189 Identities=28% Similarity=0.404 Sum_probs=163.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++||++.|+ . .+.|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 46899999994 2 57899999999999999999999999999999999999999998643 245999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc--CC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF--NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~--~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++.... .. ....+.++++.+|+....+ +++.+|||||+|||+|||+|+.+|++|||||
T Consensus 78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 974 777789988875321 11 1235667899999986654 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||++||+.+...+.++|.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999988764 5699999999999999999999999999874
No 183
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-40 Score=320.65 Aligned_cols=184 Identities=28% Similarity=0.348 Sum_probs=158.4
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~ 404 (568)
+|+++| +++.+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 5 ~l~~~~-~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRL-PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEec-CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 899999 55555 99999999 99999999999999999999999999999987643 2359999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
+|++ .+++..|+.+++...... ....+.++++.+++..... .++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 81 FQQY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred ecCC--ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9986 367778998876432111 1234677899999986554 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+|||+.+++.+.++|.++ +.|||+||||.+++..+|+++++|++|+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999998764 5799999999999999999999999999864
No 184
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=332.34 Aligned_cols=202 Identities=25% Similarity=0.365 Sum_probs=170.2
Q ss_pred CeEEEEeeEEEeCC-----CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-----~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
++|+++|++++|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999953 25799999999999999999999999999999999999999999997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..+||++|++...++. .++.+++... .+... ..+..+++.+||....+. ++.+|||||||||+|||+|+
T Consensus 83 ~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-APHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence 23589999987544553 5777765421 12232 346678999999876654 78999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.. |+++++|++|+++. .|+.+++.
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999999998764 5699999999999976 99999999999874 57777654
No 185
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=331.40 Aligned_cols=201 Identities=22% Similarity=0.270 Sum_probs=165.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEec
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQ 406 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q 406 (568)
.|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6899999999954578999999999999999999999999999999999999999999986541 35999999
Q ss_pred CCCCCCCCCCCHHHHHHH-------hcCC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 407 HSGEHLFPDDTPCEYLMK-------LFNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~-------~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
++........++.+++.. .... ..+.+..+++.+|+....+ +++.+|||||||||+|||||+.+|+||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-RQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 874222222344444321 0011 1234567889999987655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||++||+.+...+.++|.++ +.|||+||||++++..+|++++++ +|+++. .|+.+++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 999999999999999999999765 569999999999999999999777 899864 5666664
No 186
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=330.37 Aligned_cols=202 Identities=27% Similarity=0.408 Sum_probs=170.3
Q ss_pred CCeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.++++++|+++.|+ +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999995 246799999999999999999999999999999999999999999997642 245
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. ..+...|+.+++... .+.... .+.++++.+++....+. ++.+|||||+||++|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-EPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-CcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863 234567888877432 122322 35678899999876654 679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||+|||+.++..+.++|.++ +.|||+||||++++. .|+++++|.+|++.. .|+.+++
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 229 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEI 229 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999865 369999999999996 799999999999974 4666654
No 187
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=331.54 Aligned_cols=203 Identities=25% Similarity=0.336 Sum_probs=169.1
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC--------
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP-------- 397 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~-------- 397 (568)
.+.++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++.
T Consensus 35 ~~~~~l~i~~l~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 35 SGETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCCceEEEEEEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 356789999999999 56789999999999999999999999999999999999987 6899987642
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC---HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP---YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~---~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++. ++.+++... .+.. .+.+..+++.+++... ....++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 236899999873 5654 888876432 1222 2346778889988531 223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEE-EEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELW-ALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~-~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|++++ +|++|+++. .++.+++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999877 4699999999999999999975 579999975 4666554
No 188
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-39 Score=322.11 Aligned_cols=199 Identities=30% Similarity=0.458 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
|.++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+.|+|.+.. +..++|++|
T Consensus 1 l~~~~l~~~~-~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999997643 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. ++...++.+++.... +.. ...+..+++.+|+....+. .+..||+||+|||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-KPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 864 666778888765321 222 2345678899999876654 679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|++.. .++.+++.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~~ 219 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEIY 219 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHH
Confidence 99999999999999998764 5799999999999999999999999999974 46655543
No 189
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-40 Score=318.35 Aligned_cols=185 Identities=27% Similarity=0.409 Sum_probs=161.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACER-DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEE-CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998653 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc---C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~---~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+|++ .+++..|+.+++.... + .....+.++++.+|+....+ +++.+|||||||||+||+||+.+|++||||||
T Consensus 80 ~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCcc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9876 3677789998874321 2 23456778999999986655 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
|++||+.++..+.++|.++ +.|||+||||.+++..+..+++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999876 579999999999999888888766
No 190
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=329.95 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=169.7
Q ss_pred CCeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
+++|+++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 5689999999999533 4699999999999999999999999999999999999999999998653 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. .++...++.+++... .+... +.+..+++.+++....+. ++.+|||||||||+|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-EPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-CcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999873 245556776655321 12222 345678999999866554 689999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.++..+.+.|.++ +.|||+||||.+++.. ||++++|++|++.. .|+.+++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999988764 5699999999999985 99999999999974 57766654
No 191
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.2e-39 Score=306.87 Aligned_cols=165 Identities=30% Similarity=0.386 Sum_probs=148.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
++++|+++.|++++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.....++|++|++. ++ .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--cc-c
Confidence 46899999995456899999999999999999999999999999999999999999999988788999999874 33 4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
.|+.+++... ++..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 78 ~tv~~nl~~~------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~ 133 (166)
T cd03223 78 GTLREQLIYP------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133 (166)
T ss_pred ccHHHHhhcc------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHH
Confidence 6887776421 3478999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 496 IKNYQGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
|.+++.|||+||||.+++ .+||++++|+++..
T Consensus 134 l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~~ 165 (166)
T cd03223 134 LKELGITVISVGHRPSLW-KFHDRVLDLDGEGG 165 (166)
T ss_pred HHHhCCEEEEEeCChhHH-hhCCEEEEEcCCCC
Confidence 999988999999999876 58999999988753
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=325.80 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=167.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 397 (568)
+++++|++++| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++| ++|+|.++.
T Consensus 4 ~l~i~~v~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYY-GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEE-CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 68999999999 567899999999999999999999999999999999999974 699998643
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++..|+.+++... .+. .. +.+.++++.+++.. .....++.+|||||||||+||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 83 VRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 135999999864 67778998887532 121 22 23556788888842 223357899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE------CCeEEEEcCCHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE------KKNIRKFNGDFDD 537 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~------~g~i~~~~g~~~~ 537 (568)
|||+.+|++|||||||+|||+.+...+.+.|.++ +.|||+||||++++..+|+++++|. +|+++. .|+.++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999997 798874 567666
Q ss_pred H
Q psy16366 538 Y 538 (568)
Q Consensus 538 ~ 538 (568)
+
T Consensus 240 ~ 240 (258)
T PRK14241 240 I 240 (258)
T ss_pred H
Confidence 5
No 193
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=325.54 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=168.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.|+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 2 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEE-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4689999999999 567899999999999999999999999999999999999875 789987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+. .. ..+.++++.+++.. .....++.+|||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 245999999874 565 7888876521 222 11 23556788888742 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||+|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.. ++.++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF-NKTEKI 233 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe-CCHHHH
Confidence 999999999999999999999999999999999876 47999999999999999999999999999754 666554
No 194
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-39 Score=321.98 Aligned_cols=200 Identities=30% Similarity=0.412 Sum_probs=162.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-|+++|+++.|++.+++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 378999999994345799999999999999999999999999999999999999999998653 345999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. ++.. |+.+++.... ......+...+..+++ ..... .++.+|||||||||+|||+|+.+
T Consensus 82 ~~q~~~--~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 82 VLQDTF--LFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred ecCCch--hhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHHHHHHHHHHHHHhcC
Confidence 999863 5554 8888765322 1223344444444443 32222 35789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++.. |+++++|.+|++.. .++++++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~~~~~~~ 226 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIE-EGTHDELLA 226 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEE-eCCHHHHHh
Confidence 9999999999999999999999999876 4699999999999964 99999999999974 577766643
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=360.08 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=174.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.. +..
T Consensus 3 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 3 TPYISMAGIGKSF-GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred CceEEEeeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3689999999999 567899999999999999999999999999999999999999999998643 135
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-------cCC---C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-------FNL---P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-------~~~---~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
++|++|++. +++..|+.+++... .+. . .+.+.++|..+|+....+ +++.+|||||||||+|||
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 82 IGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAK 158 (510)
T ss_pred eEEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHH
Confidence 999999863 67788998876421 111 1 134567899999986654 578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++ +.|+++++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVS 233 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCC
Confidence 999999999999999999999999999998765 579999999999999999999999999996 567777653
No 196
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-39 Score=330.28 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=170.7
Q ss_pred CCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc---cEEEECC-----------
Q psy16366 333 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK---GELRKSP----------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~---G~i~~~~----------- 397 (568)
.++|+++|+++.|++ .+++|+++||+|.+|++++|+||||||||||+++|+|+++|++ |+|.++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 458999999999953 2469999999999999999999999999999999999999987 8987543
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+..+||++|++.. ++...|+.+++.. ..+... +.+.++++.+||....+ +++..|||||+|||+|||||+.
T Consensus 83 ~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHc
Confidence 2468999998742 3456788887752 122333 33667899999987665 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||+|||+.+...+.+.|.++ +.|||+||||++++. .|+++++|.+|+++. .|+.+++.
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 231 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIF 231 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999998764 569999999999995 799999999999975 56666653
No 197
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=325.17 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=169.1
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--C---CccEEEECC--------
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGELRKSP-------- 397 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~-------- 397 (568)
...++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++.
T Consensus 8 ~~~~~l~i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 8 MKQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred cCCceEEEeeEEEEE-CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 345789999999999 56789999999999999999999999999999999999987 3 589987532
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +++. ++.+++... .+. .. ..+..+++.+++... ....++.+||||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 87 DLVELRKNIGMVFQKGN--PFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred CHHHHhhceEEEecCCc--cccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 235899999874 5554 888876421 221 21 235567888888531 2234789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|||+|+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 242 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMF 242 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 99999999999999999999999999999999999876 4699999999999999999999999999974 57766653
No 198
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.4e-39 Score=320.35 Aligned_cols=191 Identities=30% Similarity=0.470 Sum_probs=161.4
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 6799999999432 5799999999999999999999999999999999999999999998754 236999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. ++. .|+.+++..... .....+..++..+++.+..+.. ++.+|||||||||+||||++.+|
T Consensus 83 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 83 VPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred eCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999874 454 588887643221 2344566778888887544432 24699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
++|||||||+|||+.++..+.+.|.++. .|||+||||++++ ++||++++|++|+++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 9999999999999999999999998863 5999999999987 6999999999999863
No 199
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=324.12 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC---cCC--CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE---LTP--NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~---~~p--~~G~i~~~~----------- 397 (568)
++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+ ++| ++|+|.++.
T Consensus 2 ~~l~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEE-CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 689999999999 567899999999999999999999999999999999997 455 589987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+. . ...+.++++.+++... ....++.+|||||||||+|
T Consensus 81 ~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 235999999874 555 5888876432 121 1 1345678888998542 2234788999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++.++||++++|++|+++. .|+.+++.
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~-~~~~~~~~ 233 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE-YDDTKKIF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-ECCHHHHh
Confidence 99999999999999999999999999999999876 4699999999999999999999999999974 46666653
No 200
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-39 Score=309.48 Aligned_cols=203 Identities=27% Similarity=0.408 Sum_probs=173.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++||+..| |..++|++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.+.. +..|
T Consensus 2 ~mL~v~~l~~~Y-G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecc-cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 589999999999 778999999999999999999999999999999999999999999998753 3569
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCC---H--HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLP---Y--EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~---~--~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+|+||-. .+|+.+|+.|++... +... . ....++.+.|---....+++.++|||||||.++|||||+.+|++|
T Consensus 81 ~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 9999975 599999999998642 2111 1 114556666653333444578999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||||.||-|.-.+.+.+.|+++ +.||++|.++..++.+++|+.++|++|+++ +.|+.+++..
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 999999999999999999888765 349999999999999999999999999997 6788877653
No 201
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=357.64 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=171.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++|++++| +++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.++. +..+
T Consensus 3 ~~i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEe-CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 589999999999 567899999999999999999999999999999999999999999998653 2359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc------C-CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF------N-LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~------~-~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++ .+++..|+.+++.... + .+. ..+.++++.+|+....+ +++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHhc
Confidence 9999986 3777889999875311 1 111 34567899999987654 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCcC
Confidence 99999999999999999999998888764 5799999999999999999999999999864 4554443
No 202
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=323.70 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=168.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--C---CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~----------- 397 (568)
..|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++.
T Consensus 3 ~~l~~~nl~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHF-GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEe-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 358999999999 56789999999999999999999999999999999999986 4 689987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHhc---C-CCH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~-~~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++..|+.+++...+ + ... +.+..+++.+++... ....++.+|||||||||+|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 82 SIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred HhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 235999999874 777789988775321 2 111 345677888998531 2234689999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|.+|++.. .|+.+++
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKI 234 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999876 5699999999999999999999999999975 4665554
No 203
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=323.65 Aligned_cols=201 Identities=25% Similarity=0.313 Sum_probs=166.5
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CC---CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TP---NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p---~~G~i~~~~---------- 397 (568)
.++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+. +| ++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 3 EPILQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred CceEEEEeeEEEE-CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 3589999999999 5678999999999999999999999999999999999985 46 489987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+.. ...+..+++.+++... ....++.+|||||||||+
T Consensus 82 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 82 VDLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred HhhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 235999999874 565 6888876522 1221 1234567888887431 223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQM 234 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999975 4665554
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=327.87 Aligned_cols=201 Identities=22% Similarity=0.338 Sum_probs=166.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
..++|+++|+++.| +++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++.
T Consensus 21 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWY-GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 45689999999999 56789999999999999999999999999999999999997 6999997643
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-H----HHHHHHHHhCCC----CCccccCCCCCCCHhHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRRQLGMFGL----PSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-~----~~~~~~L~~~~l----~~~~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. ++. .|+.+++... .+.. . ..+.+.+..+++ .... ..++..||||||||
T Consensus 100 ~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qr 175 (271)
T PRK14238 100 VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQR 175 (271)
T ss_pred HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHH
Confidence 235999999874 555 4888876531 1222 1 223455666653 2223 34789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||+|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++|+|++|++.. .|+.+++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~ 253 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKI 253 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999999876 4799999999999999999999999999975 4666554
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=323.60 Aligned_cols=199 Identities=24% Similarity=0.300 Sum_probs=166.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC-----------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP-----------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~-----------~~~ 400 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++. +..
T Consensus 2 ~~~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFY-GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEE-CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 57899999999 56789999999999999999999999999999999999974 6899998643 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA~al 468 (568)
++|++|++. +++ .|+.+++... .+. . ...+..+++.+++... ....++.+|||||+|||+|||||
T Consensus 81 i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999874 565 5888876422 111 1 1235678999999532 22346789999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 228 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEF 228 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999865 6799999999999999999999999999975 4565554
No 206
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-40 Score=300.47 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=168.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
++.+++|.+.| +..+ =..+++|..||++||+||+||||||||++|+|...|.+|+|..+. .+.++++|
T Consensus 1 ~l~L~~V~~~y-~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSY-GHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEee-Ccce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 35688999999 4332 357889999999999999999999999999999999999998763 34689999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc--C-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF--N-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~--~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|+.+ +|..+|+.+++.... + ...+.+..++.++||.++..+ .|.+|||||||||+|||+|+++-+||+||
T Consensus 78 QEnN--LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~R-LP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QENN--LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR-LPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hccc--cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhh-CccccCchHHHHHHHHHHHhccCCeEEec
Confidence 9864 999999998874211 1 234567889999999998876 56899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||+.|||.-+..+..++.+. +.|++||||..+.+..++++++++++|+|. +.|+.+++
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~ 217 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQEL 217 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHH
Confidence 999999999888887777544 679999999999999999999999999996 56766665
No 207
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=323.29 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=166.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~------------ 397 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEE-CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 68899999999 5678999999999999999999999999999999999999874 79987542
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CHH----HHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PYE----KSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~~----~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++..|+.+++... .+. ..+ .+...+..+++.. .....++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 236999999864 67778998887532 121 222 2334566666532 122357899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||.+++..+|+++++|++|+++. .|+.+++.
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE-HGPTDQLF 235 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 3799999999999999999999999999974 56666653
No 208
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=324.04 Aligned_cols=215 Identities=25% Similarity=0.335 Sum_probs=180.9
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-C----CccEEEECC---------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-P----NKGELRKSP--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p----~~G~i~~~~--------- 397 (568)
+|+++|++..|... ..+++||||+|.+||++||||.+||||||+.+.|+|+++ | .+|+|.++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999532 369999999999999999999999999999999999998 3 467876543
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCC-C----HHHHHHHHHhCCCCCc--cccCCCCCCCHhHHH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNL-P----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKA 460 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~-~----~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkq 460 (568)
...|+|+||+|...|.|-+++-+.+... .+. . .+.+.++|+.+||+.. ....++++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2479999999998899988886654321 222 2 2357788999999864 445578999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEE-----
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKF----- 531 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~----- 531 (568)
||+||.||+.+|+|||.||||++||...+..++++|++ ++.++|+||||+..+.++||+|.||..|++++.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999999999888865 467999999999999999999999999999875
Q ss_pred --cCCHHHHHHHHHHHHhhh
Q psy16366 532 --NGDFDDYREKLLTSLGEA 549 (568)
Q Consensus 532 --~g~~~~~~~~~~~~~~~~ 549 (568)
..+.+.|.+.++.++...
T Consensus 241 i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 241 IFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HhcCCCChHHHHHHHhCccc
Confidence 234567888888888664
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=323.37 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++|+++|+++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYY-GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEe-CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 478999999999 567899999999999999999999999999999999999884 899987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .++.+++... .+. .. +.+..+++.+++... ....++.+|||||+||++|
T Consensus 81 ~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 81 EYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 246999999874 555 7888877532 122 11 234567888888532 2334789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIV 233 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999999999974 46666554
No 210
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=326.26 Aligned_cols=190 Identities=25% Similarity=0.292 Sum_probs=160.0
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
++++|+++||++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++ |++|+|.++.
T Consensus 10 ~~~~l~i~nl~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEE-CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 34689999999999 56789999999999999999999999999999999999987 6899997643
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC---HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP---YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~---~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+.. .+.+.++++.+++.. .....++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 135999999873 565 4888877532 1221 234566788887642 12234779999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
||||+.+|++|||||||+|||+.+...+.++|.++ +.|||+||||++++..+||++++|++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999999999999999999876 36899999999999999999999997
No 211
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.9e-39 Score=339.04 Aligned_cols=194 Identities=25% Similarity=0.307 Sum_probs=167.3
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------------ee
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------------LR 400 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------------~~ 400 (568)
++.+.| +...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++.. ..
T Consensus 29 ~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 455667 6778999999999999999999999999999999999999999999987531 36
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +++..|+.+++... .+.+. ..+.++++.+||..+.+. ++.+|||||||||+|||||+.+|+
T Consensus 108 i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 108 VSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-KPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred EEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999974 78889999987532 23332 346678999999876654 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||++||+.++..+.+.|.++ +.|||+||||++++.++|+++++|++|+++. .|+.+++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei 252 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEI 252 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999888654 6799999999999999999999999999975 4666655
No 212
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=323.47 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=166.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~----------- 397 (568)
++|+++|++++| +.+++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++.
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEE-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 478999999999 56789999999999999999999999999999999999997 4799987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. ++. .|+.+++... .+.. ...+..+++.+++.. .....++.+|||||+||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 235899999863 554 6888876432 1221 134556788888842 12234779999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++... ++.+++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA-GPTEEM 233 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999876 57999999999999999999999999999754 555554
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=329.09 Aligned_cols=203 Identities=23% Similarity=0.289 Sum_probs=168.4
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
+.++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.++.
T Consensus 36 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYY-GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 56789999999999 56789999999999999999999999999999999999864 4999987642
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++. |+.+++... .+.. .+.+..++..+++.. .....++..|||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPN--PFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCC--CCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 236999999974 5554 898887532 1221 123456788888742 122346899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||.+++..+|+++++|++|+++. .|+.+++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~~ 269 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQLF 269 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 3589999999999999999999999999974 56766653
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=6.2e-39 Score=322.27 Aligned_cols=199 Identities=26% Similarity=0.440 Sum_probs=165.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECC----------C--
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSP----------R-- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~----------~-- 398 (568)
+++|+++||++.| +++.+|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+.. +
T Consensus 5 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEe-CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4589999999999 467899999999999999999999999999999999998 579999997642 1
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcC----------CC----HHHHHHHHHhCCCCC-ccccCCCC-CCCHhHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFN----------LP----YEKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARV 462 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----------~~----~~~~~~~L~~~~l~~-~~~~~~~~-~LSgGqkqRv 462 (568)
..++|++|++. +++..+..+++..... .. .+.+.++|..+++.. ... .++. .|||||+|||
T Consensus 84 ~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~LSgG~~qrv 160 (252)
T CHL00131 84 LGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-RNVNEGFSGGEKKRN 160 (252)
T ss_pred eeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhc-cccccCCCHHHHHHH
Confidence 13778899863 6777787776542210 11 133567899999974 344 3565 5999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~ 536 (568)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+ |+++++|++|+++. .|+.+
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 9999999999999999999999999999999999765 57999999999999887 89999999999974 56655
No 215
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=324.26 Aligned_cols=201 Identities=24% Similarity=0.289 Sum_probs=167.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 397 (568)
.++|+++||+++| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++ |++|+|..+.
T Consensus 18 ~~~l~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYY-GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEE-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 4689999999999 56789999999999999999999999999999999999986 5899987542
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++.... +. .. ..+.+++..+++.. .....++.+|||||+|||+
T Consensus 97 ~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 97 YEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred HHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 335999999863 555 58888875321 21 11 23556788888852 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||.+++..+||++++|++|+++. .|+.+++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNI 249 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999876 4689999999999999999999999999975 4666554
No 216
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-39 Score=321.56 Aligned_cols=200 Identities=27% Similarity=0.336 Sum_probs=165.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 397 (568)
.|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFY-GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEE-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 47899999999 567899999999999999999999999999999999999763 689997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++ .|+.+++... .+. . .+.+.+++..+++.. .....++.+|||||+|||+||
T Consensus 82 ~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 235899999863 565 7888876431 222 1 234556778888742 122347899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++.+..+|+++++|++|+++. .++.+++.
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 233 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDLF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999999999975 46666553
No 217
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=355.28 Aligned_cols=200 Identities=23% Similarity=0.322 Sum_probs=172.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECC------------Ce
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSP------------RL 399 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~------------~~ 399 (568)
++|+++|++++| +++++|+||||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.++. +.
T Consensus 4 ~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTF-GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEe-CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 589999999999 567899999999999999999999999999999999999996 899998643 24
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-----~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
.++|++|++. +++..|+.+++.... + .. .+.+.++++.+++....+ +++.+|||||||||+|||||+
T Consensus 83 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 83 GIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA-TPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred CeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence 5999999863 777889999875321 1 12 134677899999976554 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 230 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAAGM 230 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-ecccccC
Confidence 999999999999999999999999998765 5799999999999999999999999999864 4555443
No 218
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.8e-39 Score=316.17 Aligned_cols=181 Identities=29% Similarity=0.438 Sum_probs=155.0
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEE
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIG 402 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~ 402 (568)
++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.. +..++
T Consensus 1 i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKF-GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEE-CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 46899999 567899999999999999999999999999999999999999999987643 13599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++..|+.+++... .+.. .+.+.++++.+|+....+ +++.+|||||+||++|||||+.+|++|
T Consensus 80 ~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999864 67778998876431 1222 234677899999976655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
||||||++||+.++..+.+.|+++ +.|||+||||++++ .+|+++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999875 57999999999987 479999875
No 219
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.1e-39 Score=320.07 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|..+. +..++|++|
T Consensus 1 i~i~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRF-GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEE-CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999987642 246899999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++.... +.. .+.+.++++.+++....+ .++..||+||+||++|||+|+.+|+++||||
T Consensus 80 ~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-RYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 873 777788888775321 222 234567899999976554 4679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|||+.+...+.++|.+. +.|||++||+++++..+|+++++|++|+++. .++.+++.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999764 5799999999999999999999999999975 46666654
No 220
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-39 Score=319.65 Aligned_cols=198 Identities=24% Similarity=0.363 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
|+++|+++.|+ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46899999994 43 89999999999999999999999999999999999999999998653 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++ .+++..++.+++.... +.. .+.+.++++.++|...... ++.+|||||+|||+||||++.+|++|||||
T Consensus 79 ~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-KPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-CcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 86 4677789988775321 222 2345678999999876654 689999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|||+.+.+.+.++|+++ +.|||++|||++++..+|+++++|++|+++. .++.++..
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 218 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVF 218 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999988764 5799999999999999999999999999974 56666554
No 221
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=308.61 Aligned_cols=201 Identities=23% Similarity=0.394 Sum_probs=175.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|.++|+.++| +.++++++|||+|++||++|++|||||||||.+.+++|+.+|++|.|..+. +..|
T Consensus 3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 468899999999 788999999999999999999999999999999999999999999997642 4569
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcC-----CC--HH--HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFN-----LP--YE--KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~-----~~--~~--~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
||++|++. +|-.+|+.++++.... .. .+ ++.++|+.|++.+..+. +..+||||||+|+.|||||+.+|
T Consensus 82 gYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-KAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC-cccccccchHHHHHHHHHHhcCC
Confidence 99999985 8999999998764321 11 12 35588999999987664 78999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHH---HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l---~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+++||||||+|.||-++..+.+++ ++.+.+|+++-|+.+....+|||.|+|.+|++. +.|+++++.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~ 227 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIV 227 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHh
Confidence 999999999999998876665555 555789999999999999999999999999996 688888764
No 222
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-39 Score=326.27 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=168.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC--------ccEEEECC---------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--------KGELRKSP--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~--------~G~i~~~~--------- 397 (568)
+|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 1 ml~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVAR-RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEE-CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 47899999999 5678999999999999999999999999999999999999998 89998643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHhc-------C-C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-------~-~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. ++...|+.+++.... + . ..+.+..+|+.+++....+ +++.+|||||+|||+|
T Consensus 80 ~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHH
Confidence 124799999863 334578888874321 0 0 1134667899999987655 4789999999999999
Q ss_pred HHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 465 AELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 465 A~al~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
||+|+ .+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~- 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA- 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-
Confidence 99999 599999999999999999999999988754 5799999999999999999999999999874
Q ss_pred cCCHHHHH
Q psy16366 532 NGDFDDYR 539 (568)
Q Consensus 532 ~g~~~~~~ 539 (568)
.++.++..
T Consensus 236 ~g~~~~~~ 243 (272)
T PRK13547 236 HGAPADVL 243 (272)
T ss_pred ecCHHHHc
Confidence 56766653
No 223
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=324.32 Aligned_cols=203 Identities=26% Similarity=0.406 Sum_probs=169.9
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++|.++||+++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 18 ~~~~l~i~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEE-CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35789999999999 577899999999999999999999999999999999999986 699987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC-CCHH----HHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPYE----KSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~~~~----~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .. .... .+.+++..+++... ....++.+|||||+|||+
T Consensus 97 ~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 246899999874 566 6888876532 11 1222 23466888888642 123467899999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+|+.+|+||||||||++||+.++..|.+.|.++ ..|||+||||++++..+|+++++|.+|+++. .|+.+++.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 250 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLF 250 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4799999999999999999999999999975 46666654
No 224
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-39 Score=322.54 Aligned_cols=199 Identities=26% Similarity=0.342 Sum_probs=163.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--C---CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~---------- 397 (568)
+++++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFY-GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEE-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4689999999999 56789999999999999999999999999999999999875 4 589987542
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+. .. +.+...++.+++.. .....++.+|||||||||+
T Consensus 82 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 236999999864 555 5888876432 121 11 23455677777632 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
|||+|+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++.. ++..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 232 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF-ADTK 232 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 999999999999999999999999999999999876 47999999999999999999999999999865 4433
No 225
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-39 Score=327.08 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=169.3
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||++.|++. .++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 378999999999532 3599999999999999999999999999999999999999999997643 345
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++.. ++...|+.+++... .+... +.+..+++.+|+..... .++..|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 83 IGMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-REPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred eEEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999998632 34456888877431 12232 23567889999986655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.+...+.++|.++ +.|||+||||++++. .|+++++|++|+++. .|+.+++.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 228 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELF 228 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999988654 679999999999997 599999999999874 56776654
No 226
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.6e-39 Score=317.57 Aligned_cols=188 Identities=27% Similarity=0.401 Sum_probs=160.1
Q ss_pred eEEEEeeEEEeCC------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC--C---------
Q psy16366 335 VLGLHDVTFGYPG------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--P--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--~--------- 397 (568)
+|+++|+++.|++ ..++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++ .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999942 1479999999999999999999999999999999999999999999874 1
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.++++.+++.......++.+||||||||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 135899999873 67788888876431 2222 235667899999976443457899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEE
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
+|||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||.+++..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999999999765 5799999999999999999998763
No 227
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.4e-39 Score=319.75 Aligned_cols=199 Identities=27% Similarity=0.429 Sum_probs=161.1
Q ss_pred EEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999953 35799999999999999999999999999999999999999999998754 245999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHH---------HHhC--CCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQ---------LGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~---------L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +++ .|+.+++.... ......+... +..+ ++..... .++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENV--LFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCch--hcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhh-cCCCcCCHHHHHHHHHHHHHhhC
Confidence 999863 554 58888775321 2222233222 3333 3443333 36799999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .|+++++|.+|+++. .++.+++.+
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~~ 225 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVE-QGSHDELLA 225 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999999999876 469999999999996 599999999999974 567666543
No 228
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=324.56 Aligned_cols=203 Identities=23% Similarity=0.273 Sum_probs=167.0
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
.+++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 17 ~~~~l~~~nl~~~~-~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEe-CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 35689999999999 567899999999999999999999999999999999999863 589987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~---~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. ++. .++.+++.... +.. .+.+...+..+++.. .....++..|||||+|||+|
T Consensus 96 ~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 SVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 246999999874 555 48888764321 111 233456677777632 12234789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE---------CCeEEEEcC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNG 533 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~---------~g~i~~~~g 533 (568)
||||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|+ +|+++. .|
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g 251 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FS 251 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eC
Confidence 99999999999999999999999999999999876 4699999999999999999999998 799874 57
Q ss_pred CHHHHH
Q psy16366 534 DFDDYR 539 (568)
Q Consensus 534 ~~~~~~ 539 (568)
+.+++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 766653
No 229
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=362.50 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=173.4
Q ss_pred CCCeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 332 PPPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
.+++|+++|+++.|+. ..++|+||||+|.+|+++||+||||||||||+++|+|+++|++|.|.+..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 3568999999999942 24799999999999999999999999999999999999999999987532
Q ss_pred --------------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCC--ccccCCCCC
Q psy16366 398 --------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPS--YAHTIPIRD 453 (568)
Q Consensus 398 --------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~--~~~~~~~~~ 453 (568)
+..|||++|++...+++.+|+.+++... .+.+. +.+.++|+.+||.. ....+++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 1359999999754577888999877532 13332 34667899999963 123457899
Q ss_pred CCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 454 LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|||||||||+||+||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 9999999999999999999999999999999999999888888654 679999999999999999999999999997
Q ss_pred EEcCCHHHH
Q psy16366 530 KFNGDFDDY 538 (568)
Q Consensus 530 ~~~g~~~~~ 538 (568)
. .|+.+++
T Consensus 249 ~-~g~~~~~ 256 (623)
T PRK10261 249 E-TGSVEQI 256 (623)
T ss_pred c-cCCHHHh
Confidence 4 5766655
No 230
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1e-38 Score=319.90 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=160.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECCC------------ee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSPR------------LR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~ 400 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++.. ..
T Consensus 1 ~i~~~nl~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSV-EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEe-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 47899999999 4678999999999999999999999999999999999995 699999976531 35
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh------c-C---CC----HHHHHHHHHhCCCCCccccCCCC-CCCHhHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL------F-N---LP----YEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALA 465 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~------~-~---~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqRv~lA 465 (568)
++|++|++. +++..+..+++... . . .. ...+.+.++.++++.....+++. .|||||||||+||
T Consensus 80 i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCch--hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 899999864 44444443332110 0 0 11 12345678889996433334554 7999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+ |+++++|++|+++ ..|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence 9999999999999999999999999999987654 57999999999999987 8999999999996 45777643
No 231
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6.8e-39 Score=336.94 Aligned_cols=193 Identities=24% Similarity=0.332 Sum_probs=164.8
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~ 404 (568)
|++++| +++. + ++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++|+
T Consensus 4 ~l~~~~-~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRL-GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEE-CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 799999 5555 4 99999999999999999999999999999999999999987532 2459999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc-CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
+|++ .+|+.+|+.+++.... ... ...+.++++.++|....+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 9987 4788889999875321 111 234678899999987665 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEVW 220 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHh
Confidence 99999999999999988764 5799999999999999999999999999974 56666543
No 232
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=319.95 Aligned_cols=200 Identities=23% Similarity=0.304 Sum_probs=165.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 397 (568)
++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 3 ~~l~~~~l~~~~-~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEE-CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 578999999999 5678999999999999999999999999999999999999997 59986532
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++. |+.+++... .+.. .+.+...+..+++... ....++.+|||||+|||+|
T Consensus 82 ~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPN--PFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCc--cCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 346999999974 5554 888876432 1221 1234456777776421 2234789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|++.. .++.++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEI 233 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence 99999999999999999999999999999999876 4799999999999999999999999999975 4666554
No 233
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-39 Score=352.87 Aligned_cols=193 Identities=25% Similarity=0.349 Sum_probs=168.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
|+|+++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 3 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTF-PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEE-CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 689999999999 567899999999999999999999999999999999999999999998643 2359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-----~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++|++. +++..|+.+++.... + .. .+.+.++++.+++....+ +++.+|||||||||+|||+|+.+
T Consensus 82 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD-TPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC-CchhhCCHHHHHHHHHHHHHHhC
Confidence 99999863 777889988875321 1 12 234667899999986554 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998765 5799999999999999999999999999864
No 234
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.3e-39 Score=320.40 Aligned_cols=185 Identities=29% Similarity=0.462 Sum_probs=156.5
Q ss_pred EEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEecCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFDQHSGEHL 412 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~q~~~~~l 412 (568)
..| +.+++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.. +..++|++|+. ..+
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 106 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQL 106 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-ccc
Confidence 445 556899999999999999999999999999999999999999999998643 23689987543 246
Q ss_pred CCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 413 FPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 413 ~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
++..|+.+++.. ..+... ..+..+++.+++....+ .++..||||||||++||++|+.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 677888887632 223322 23456788999986555 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 486 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 486 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.+...+.++|.++ +.|||+||||++++..+|+++++|.+|++..
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999876 4699999999999999999999999999863
No 235
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-39 Score=304.68 Aligned_cols=160 Identities=33% Similarity=0.521 Sum_probs=144.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
++++|+++.| ++.++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRY-GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEE-CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4689999999 456899999999999999999999999999999999999999999997643 24689999
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
|++. +++..++.+++. |||||+|||+|||||+.+|++|||||||++||
T Consensus 80 q~~~--~~~~~tv~~~~~------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 80 EEPS--LYENLTVRENLK------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred cCCc--cccCCcHHHHhh------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9864 667778777652 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+.++..+.++|.++ +.|||++|||.+++..+|+++++|++|++
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999876 46899999999999999999999999864
No 236
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.7e-39 Score=311.78 Aligned_cols=184 Identities=29% Similarity=0.420 Sum_probs=160.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|+++||++.| +++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.. +..++|++
T Consensus 1 l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCER-DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEe-CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4689999999 567899999999999999999999999999999999999999999997643 23689999
Q ss_pred cCCCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
|++. +++..|+.+++..... ...+.+.++++.+++.+..+ .++.+||||||||++|||||+.+|++|||||||+||
T Consensus 80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9863 6667899888754321 23456778899999987654 478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE
Q psy16366 485 DIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 485 D~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
|+.++..+.+.|.++ +.|+|+||||...+..+|++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999765 679999999999999999999776
No 237
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=322.62 Aligned_cols=203 Identities=26% Similarity=0.317 Sum_probs=168.9
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 22 ~~~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 22 EQTALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CCcEEEEEEEEEEE-CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 35689999999999 567899999999999999999999999999999999999874 899987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++. |+.+++... .+. . ...+.++++.+++.. .....++.+|||||+|||
T Consensus 101 ~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 101 VAELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 346899999864 5665 888877532 222 1 123566788888853 122346789999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|++|+++. .|+.+++.
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 255 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTLF 255 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHHh
Confidence 9999999999999999999999999999999999876 4799999999999999999999999999874 56666653
No 238
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=317.17 Aligned_cols=198 Identities=30% Similarity=0.420 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999432 2799999999999999999999999999999999999999999998653 235999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHH---------HHHHhC--CCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSR---------RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +++ .|+.+++.... ......+. +++..+ ++..... .++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVF--LFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCe--ecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeec-cCCCcCCHHHHHHHHHHHHHhcC
Confidence 999874 554 58888775321 12222222 334444 4554443 36789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++.. |+++++|++|++. ..++.+++.
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~ 224 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELL 224 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHH
Confidence 9999999999999999999999999876 5699999999999976 9999999999997 457776654
No 239
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=319.92 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=165.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 397 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEE-CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 68899999999 567899999999999999999999999999999999999986 589987642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-H----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+..++|++|++. +++ .|+.+++... .+.. . +.+...++.+++.. .....++.+|||||+|||+|||
T Consensus 82 ~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 82 RIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 235899999874 565 6888877532 1221 1 23445677788743 1223478899999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|.+|++.. .|+.+++
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999876 4699999999999999999999999999974 4666655
No 240
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=322.72 Aligned_cols=201 Identities=22% Similarity=0.269 Sum_probs=165.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 397 (568)
.|+|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++.
T Consensus 8 ~~~l~i~~v~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYY-GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEE-CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4689999999999 56789999999999999999999999999999999999986 4789987643
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~---~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++ .|+.+++.... +.. .+.+..++..+++.. .....++.+|||||+|||+||
T Consensus 87 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 87 VEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred HHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 235999999873 555 48888764321 111 233455677777742 122347889999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE---------CCeEEEEcCC
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNGD 534 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~---------~g~i~~~~g~ 534 (568)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++|+|+ +|+++. .|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCC
Confidence 9999999999999999999999999999999876 3699999999999999999999998 788874 466
Q ss_pred HHHH
Q psy16366 535 FDDY 538 (568)
Q Consensus 535 ~~~~ 538 (568)
.+++
T Consensus 243 ~~~~ 246 (264)
T PRK14243 243 TEKI 246 (264)
T ss_pred HHHH
Confidence 6665
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=320.57 Aligned_cols=203 Identities=22% Similarity=0.345 Sum_probs=170.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
.|++.++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+
T Consensus 8 ~~~i~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYI-NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEec-CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4789999999999 678899999999999999999999999999999999999999997654321
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++..|+.+++... .+. .. ..+..+++.+++.. .....++..||||||||++|
T Consensus 87 ~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 87 KLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 346899999874 67778888877532 122 22 23456788899853 12234678999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|++..+ |+.+++.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~-g~~~~~~ 240 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW-GSSNEIF 240 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 99999999999999999999999999999999876 47999999999999999999999999999754 5666554
No 242
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.2e-39 Score=315.37 Aligned_cols=190 Identities=30% Similarity=0.455 Sum_probs=161.8
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+++++|+++.|+++ +.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 37899999999432 6799999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++. +++..|+.+++... . .... ..+.++++.+|+...... ++.+||+|||||++|||+|+
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-YPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHh
Confidence 246999999874 67778988876422 1 1222 346778999999765554 67999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+++. .+|+++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999988888654 57999999999965 79999999999975
No 243
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.2e-39 Score=353.56 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=171.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC----------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP---------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~---------------- 397 (568)
|+++|++++| +++++|+|+||+|.+|++++|+|||||||||||++|+|++ +|++|+|.+..
T Consensus 1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEE-CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 4689999999 5678999999999999999999999999999999999997 79999987630
Q ss_pred ----------------------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCC
Q psy16366 398 ----------------------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 442 (568)
Q Consensus 398 ----------------------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l 442 (568)
+..++|++|++. .+++..++.+++... .+.+. +.+.++|+.+||
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 235899999742 466778888876432 23322 346678999999
Q ss_pred CCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCc
Q psy16366 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDC 518 (568)
Q Consensus 443 ~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~ 518 (568)
....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+
T Consensus 159 ~~~~~-~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 159 SHRIT-HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hhhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 86654 478999999999999999999999999999999999999999998887654 5799999999999999999
Q ss_pred eEEEEECCeEEEEcCCHHHHHHH
Q psy16366 519 ELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 519 ~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
++++|++|+++. .|+++++...
T Consensus 238 ~i~~l~~G~i~~-~g~~~~~~~~ 259 (520)
T TIGR03269 238 KAIWLENGEIKE-EGTPDEVVAV 259 (520)
T ss_pred EEEEEeCCEEee-ecCHHHHHHH
Confidence 999999999874 6888777554
No 244
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.6e-39 Score=315.28 Aligned_cols=191 Identities=25% Similarity=0.338 Sum_probs=160.7
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 6899999999543 4799999999999999999999999999999999999999999997643 346999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++. +++ .|+.+++........+++.+.+..+++..... ..++..|||||+|||+|||+|+.+|+
T Consensus 83 ~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 83 IPQDPV--LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred ECCCCc--ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999874 554 58888764322234455566666666654322 23678999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+.++..+.++|.++ +.|||++|||.+++.. |+++++|++|++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe
Confidence 99999999999999999999999875 4689999999999976 89999999999864
No 245
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.2e-39 Score=351.59 Aligned_cols=194 Identities=24% Similarity=0.353 Sum_probs=167.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECC------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSP------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~------------~~~ 400 (568)
+|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++. +..
T Consensus 1 ~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEe-CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 47899999999 567899999999999999999999999999999999999987 799998753 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-----C--CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-----N--LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-----~--~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +++..|+.+++.... . ... +.+.++++.+++......+++.+|||||||||+|||||+
T Consensus 80 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 999999873 677889988765321 1 111 345678999999865444578999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 999999999999999999999999988764 57999999999999999999999999998743
No 246
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.9e-39 Score=306.35 Aligned_cols=165 Identities=25% Similarity=0.346 Sum_probs=146.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
+++++++|++++| +|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3589999999998 89999999999999999999999999999999999999999997643 236
Q ss_pred EEEEecCCC-CCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 401 IGKFDQHSG-EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 401 i~~~~q~~~-~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++|++|++. ..+++..|+.+++..... |||||||||+|||||+.+|++|||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL--------------------------LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh--------------------------cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 999999863 246677788887642110 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 480 PTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
||++||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|++
T Consensus 131 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999865 57999999999999999999999999864
No 247
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=319.89 Aligned_cols=198 Identities=24% Similarity=0.361 Sum_probs=164.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC-------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~------------- 397 (568)
-+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.+..
T Consensus 6 ~~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEE-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 4689999999 56789999999999999999999999999999999999986 4799997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++. ++.+++... .+. . ...+..+++.+++... ....++..|||||||||+||
T Consensus 85 ~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 235899999863 5654 787776421 121 1 1235567899998642 12346789999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 235 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEI 235 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999765 4799999999999999999999999999974 4665554
No 248
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.2e-39 Score=308.09 Aligned_cols=174 Identities=32% Similarity=0.545 Sum_probs=143.7
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCC
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~ 416 (568)
+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++... +. ..
T Consensus 1 ~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~-~~------------~~ 66 (180)
T cd03214 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD-LA------------SL 66 (180)
T ss_pred CeeEEEEEE-CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-CC------------cC
Confidence 368999999 45789999999999999999999999999999999999999999999875421 10 00
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 417 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 417 ~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
..... ....+ .+.++++.+|+....+ .++..|||||+||++|||+|+.+|++|||||||++||+.+...+.+.|
T Consensus 67 ~~~~~-~~~i~----~~~q~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 140 (180)
T cd03214 67 SPKEL-ARKIA----YVPQALELLGLAHLAD-RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140 (180)
T ss_pred CHHHH-HHHHh----HHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 11111 00000 0112788889986554 478999999999999999999999999999999999999999999998
Q ss_pred Hhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 497 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 497 ~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 141 ~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 141 RRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 765 5699999999999999999999999999863
No 249
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-39 Score=292.19 Aligned_cols=191 Identities=30% Similarity=0.376 Sum_probs=165.8
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC---------------
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--------------- 396 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--------------- 396 (568)
+|+++++++..+. .-.||++|+|.|++||.++||||+||||||||-+++|+..|++|+|+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 7888999888732 2369999999999999999999999999999999999999999999853
Q ss_pred CCeeEEEEecCCCCCCCCCCCHHHHHHHh---cC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 397 ~~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
...++|++||.+ ++.+.+|..|++... .+ .....++++|+.+||...... +|.+|||||+|||+||||++
T Consensus 86 R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-yP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-YPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-CccccCchHHHHHHHHHHhc
Confidence 235799999986 588999999987532 22 123557889999999987765 67999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
..|+||+.||||-+||..+-+.+.++|- +.+.|+|+||||..++.+ |+|++.|.+|+++
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 9999999999999999999888888874 457799999999999976 7899999999985
No 250
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-38 Score=311.29 Aligned_cols=185 Identities=32% Similarity=0.417 Sum_probs=159.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEec
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQ 406 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q 406 (568)
+++++|+++.| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVR-GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEE-CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 58899999999 5678999999999999999999999999999999999999999999987542 35789987
Q ss_pred CCCCCCCCCCCHHHHHHH---hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMK---LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++. +++..|+.+++.. ..+.....+.++++.+|+.... ..++.+||||||||++||||++.+|++|||||||+|
T Consensus 81 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 653 5667888887643 2233345678899999998654 457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 484 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
||+.++..+.+.|.++ +.|||+||||.+++.. ++++.++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999865 6799999999999986 78877753
No 251
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=316.37 Aligned_cols=199 Identities=29% Similarity=0.383 Sum_probs=161.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
++++|+++.|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 46899999995456799999999999999999999999999999999999999999998754 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+|++. +++ .|+.+++.... ......+...+..+++ ..... .++..|||||||||+|||||+.+|
T Consensus 81 ~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 81 PQDTV--LFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred CCCCh--hhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99973 554 58888775321 2223333333333333 22222 356899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|||||||+|||+.++..+.+.|.++ +.|||+|||+.+++.. |+++++|++|++. ..++.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHhh
Confidence 999999999999999999999999766 5699999999999975 9999999999996 4566666543
No 252
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=319.10 Aligned_cols=201 Identities=22% Similarity=0.291 Sum_probs=167.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 397 (568)
++|+++|+++.| ++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+..
T Consensus 6 ~~l~~~nl~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYY-DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEe-CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 478999999999 5667999999999999999999999999999999999999985 78776432
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+. +. ..+..+++.+++... ....++.+|||||+|||+|
T Consensus 85 ~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 85 RLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 235899999864 666 7888876432 122 21 235667888887532 2345789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC-----CeEEEEcCCH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK-----KNIRKFNGDF 535 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~-----g~i~~~~g~~ 535 (568)
||+|+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++.++|+++++|++ |+++ ..|+.
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~ 240 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLT 240 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCH
Confidence 99999999999999999999999999999988763 67999999999999999999999999 9986 45777
Q ss_pred HHHH
Q psy16366 536 DDYR 539 (568)
Q Consensus 536 ~~~~ 539 (568)
+++.
T Consensus 241 ~~~~ 244 (261)
T PRK14258 241 KKIF 244 (261)
T ss_pred HHHH
Confidence 6653
No 253
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-38 Score=352.57 Aligned_cols=205 Identities=21% Similarity=0.319 Sum_probs=170.1
Q ss_pred CCeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-------
Q psy16366 333 PPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------- 397 (568)
.|+|+++|+++.|++ .+++|+|+||+|.+||++||+||||||||||+|+|+|+++| ++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 358999999999942 25799999999999999999999999999999999999987 799987532
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCc--cccCCCCCCCHhHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSY--AHTIPIRDLSGGQK 459 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~--~~~~~~~~LSgGqk 459 (568)
+..+||++|++...+++..++.+++... .+.+. +.+.++++.+||... ...+++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 1369999999743466667777655321 12222 346678999999752 12347899999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH
Q psy16366 460 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF 535 (568)
Q Consensus 460 qRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~ 535 (568)
|||+|||||+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE-QNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE-eCCH
Confidence 9999999999999999999999999999999999998763 6799999999999999999999999999874 4655
Q ss_pred HHH
Q psy16366 536 DDY 538 (568)
Q Consensus 536 ~~~ 538 (568)
+++
T Consensus 242 ~~~ 244 (529)
T PRK15134 242 ATL 244 (529)
T ss_pred HHH
Confidence 554
No 254
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.7e-39 Score=351.83 Aligned_cols=200 Identities=24% Similarity=0.296 Sum_probs=167.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.... +..++|
T Consensus 3 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRL-SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEc-CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 68999999999 566799999999999999999999999999999999999999999997532 124899
Q ss_pred EecCCCCCCCC------CCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 404 FDQHSGEHLFP------DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 404 ~~q~~~~~l~~------~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
++|++...++. ..++.+++... ....+.+.++++.+|+....+ +++.+|||||||||+||+||+.+|++|||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLD-RRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99986432221 34555544211 012345778899999986554 57899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 222 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGEREEI 222 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999876 5799999999999999999999999999974 5776664
No 255
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-38 Score=307.54 Aligned_cols=185 Identities=22% Similarity=0.332 Sum_probs=157.0
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
+.++++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999532 4799999999999999999999999999999999999999999998753 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+|++|++. +++ .|+.+++..........+.+.++ + . .++..|||||+|||+|||+|+.+|++|||||||
T Consensus 85 ~~v~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~l~---~----~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 153 (207)
T cd03369 85 TIIPQDPT--LFS-GTIRSNLDPFDEYSDEEIYGALR---V----S-EGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred EEEecCCc--ccC-ccHHHHhcccCCCCHHHHHHHhh---c----c-CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 99999973 555 48888874322233344444444 2 2 367899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 482 NNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
++||+.++..+.+.|.++ +.|+|++|||.+++.. |+++++|++|++..
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 154 ASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEe
Confidence 999999999999999876 4699999999999976 89999999999864
No 256
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=324.61 Aligned_cols=208 Identities=25% Similarity=0.304 Sum_probs=170.3
Q ss_pred CCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----
Q psy16366 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---- 397 (568)
Q Consensus 327 ~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---- 397 (568)
.++...+++|.++||++.| +++++|+++||+|.+|++++|+|||||||||||++|+|+++ |++|+|.++.
T Consensus 37 ~~~~~~~~~l~i~nl~~~~-~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 37 DYEFDGDAKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ccccCCCceEEEEEEEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3344456789999999999 56789999999999999999999999999999999999986 6899997642
Q ss_pred ---------CeeEEEEecCCCCCCCCCCCHHHHHHHhc---------------CCC-----HHHHHHHHHhCCCCC---c
Q psy16366 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------------NLP-----YEKSRRQLGMFGLPS---Y 445 (568)
Q Consensus 398 ---------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---------------~~~-----~~~~~~~L~~~~l~~---~ 445 (568)
+..++|++|++. +++ .++.+++.... +.. .+.+..++..+++.. .
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 192 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND 192 (305)
T ss_pred cccccHHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH
Confidence 236999999874 565 48888765311 011 233566788888742 1
Q ss_pred cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceE-EE
Q psy16366 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-WA 522 (568)
Q Consensus 446 ~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i-~~ 522 (568)
....++.+|||||+|||+|||||+++|+||||||||+|||+.+...|.++|+++ +.|||+||||++++..+|+++ ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 223467999999999999999999999999999999999999999999999876 469999999999999999996 57
Q ss_pred EECCeEEEEcCCHHHHH
Q psy16366 523 LEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 523 l~~g~i~~~~g~~~~~~ 539 (568)
|++|+++. .|+.+++.
T Consensus 273 l~~G~i~~-~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVE-YDDTDKIF 288 (305)
T ss_pred ecCCEEEE-eCCHHHHH
Confidence 89999975 57776654
No 257
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=303.55 Aligned_cols=161 Identities=37% Similarity=0.496 Sum_probs=142.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i~ 402 (568)
++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 1 i~~~~l~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEE-CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4689999999 567899999999999999999999999999999999999999999997532 23589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|++|++. ++...|+.+++... |||||+||++|||||+.+|++|||||||+
T Consensus 80 ~~~q~~~--~~~~~t~~~~l~~~----------------------------lS~G~~qr~~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 80 MVFQDFA--LFPHLTVLENIALG----------------------------LSGGQQQRVALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred EEecCCc--cCCCCCHHHheeec----------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 9999864 56667776654311 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 483 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|||+.++..+.++|.++ +.|+|+||||.+++..+|+++++|++|+
T Consensus 130 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999988764 5799999999999999999999999874
No 258
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=296.84 Aligned_cols=200 Identities=26% Similarity=0.446 Sum_probs=174.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------- 397 (568)
+.|.++|+.++| |...+|++||++-+.|+++.|+|.+|||||||||||.=+..|+.|.|..+.
T Consensus 5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468899999999 788899999999999999999999999999999999999999999987532
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
+.+.|++||+++ ++..+|+.++.... .+.+. +.+..+|.++|+....+ .+|..|||||+||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FN--LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR 160 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFN--LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQR 160 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcc--hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHHH
Confidence 246799999975 89999999987642 24443 44667899999987766 4678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++|||||+.+|+++|+|||||+|||+-.-.+.+.++++ +.|+++|||.+.|+..++++++++++|.|.+ .|+++..
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qv 239 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQV 239 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHH
Confidence 99999999999999999999999999988887777654 7899999999999999999999999999854 6776654
No 259
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.8e-38 Score=316.24 Aligned_cols=199 Identities=31% Similarity=0.409 Sum_probs=160.0
Q ss_pred EEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 336 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++++|+++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999953 24699999999999999999999999999999999999999999998654 23599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhC-----------CCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMF-----------GLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~-----------~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +++ .|+.+++.... ......+...+..+ ++..... .++.+|||||+|||+|||+|+.
T Consensus 81 ~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 81 LVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhc
Confidence 9999863 554 58888765321 11222333333333 3332333 3578999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .||++++|.+|+++ ..++.+++..
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA 226 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence 99999999999999999999999999765 468999999999997 89999999999986 4566666543
No 260
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=316.81 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=166.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.++|+++|+++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 4 ~~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEE-CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 3589999999999 567899999999999999999999999999999999999763 489987542
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+. .. ..+.++++.+++... ....++..|||||||||+
T Consensus 83 ~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 235899999874 565 4888876421 121 11 234567788877431 123478899999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+|+.+|++|||||||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE-FDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE-cCCHHHHH
Confidence 999999999999999999999999999999999876 4799999999999999999999999999974 56666553
No 261
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.8e-38 Score=313.77 Aligned_cols=193 Identities=24% Similarity=0.296 Sum_probs=164.1
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC--------Cee
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP--------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--------~~~ 400 (568)
++.++||++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 56799999999764 689999999999999999999999999999999999999 9999998643 356
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cC---CCH----HHHHH-HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FN---LPY----EKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~---~~~----~~~~~-~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++ .+++..|+.+++... .. ... ..+.. .+..+++....+ .++..|||||+|||+|||+|+
T Consensus 83 i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDD--ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCC--ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCcCHHHHHHHHHHHHHH
Confidence 99999986 367788998877521 11 111 12334 788888876554 468999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecch-HHHHhhCceEEEEECCeEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE-RLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~i~~~~~~i~~l~~g~i~~ 530 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|||++||+. ..+..+||++++|++|+++.
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999765 56999999998 68999999999999999864
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=318.54 Aligned_cols=201 Identities=26% Similarity=0.360 Sum_probs=166.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.++|+++|++++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 14 ~~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEE-CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 5689999999999 567899999999999999999999999999999999999975 789987632
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +++. ++.+++... .+.. .+.+..++..+++.. .....++..|||||+||
T Consensus 93 ~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 93 DPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred CHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 235899999864 5654 888876432 1221 234556777777642 12234678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||+|+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++.. |+.+++
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 247 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF-GATDTI 247 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999999876 36999999999999999999999999999754 666554
No 263
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.3e-38 Score=321.14 Aligned_cols=197 Identities=26% Similarity=0.375 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
|+++|++++|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++. +..|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 689999999953 4579999999999999999999999999999999999997 789998754 246999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCC-----------CCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|+ .|+.+++........+++.++++.+||...... .+.. |||||+|||+|||||+.+|
T Consensus 82 v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~-~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 82 IPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ-FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred ECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHh-CcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999874 665 488888743223456678888999999866554 4454 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+.+...+.+.|.+. +.|||+||||++++.. ||++++|++|+++.+ |+++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~-g~~~~l~ 224 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY-DSIQKLL 224 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec-CCHHHHh
Confidence 999999999999999999999999864 5799999999999975 999999999999865 5665543
No 264
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.9e-38 Score=313.56 Aligned_cols=192 Identities=29% Similarity=0.452 Sum_probs=159.7
Q ss_pred CCCeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------C
Q psy16366 332 PPPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------R 398 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~ 398 (568)
..++++++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999532 4699999999999999999999999999999999999999999998753 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHH---------HHHHHHhC--CCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEK---------SRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
..++|++|++. +++ .|+.+++.... ...... +.++++.+ |+..... .++.+|||||+|||+|||
T Consensus 88 ~~i~~~~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 88 SKVSLVGQEPV--LFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred hhEEEEecccH--HHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHH
Confidence 45999999873 554 58888764221 111111 23567777 7766554 368999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+|+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.. |+++++|++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999876 3699999999999964 999999999864
No 265
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-38 Score=308.40 Aligned_cols=185 Identities=26% Similarity=0.371 Sum_probs=151.9
Q ss_pred EEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 336 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 336 l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
++++||++.|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +|+|++|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~-- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW-- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--
Confidence 4689999999543 3799999999999999999999999999999999999999999999876 7999999974
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCC-----------CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~-----------~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
++ ..|+.+++..............+..+++. .... .++..||+|||||++|||+|+.+|++||||||
T Consensus 77 l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 77 IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 55 46888887543222333333444443332 2222 35689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 481 TNNLDIESIDALAE-AIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 481 t~~LD~~~~~~l~~-~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|++||+.+.+.+.+ ++..+ +.|||+|||+.+.+.. |+++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 99999999998887 45433 4799999999999988 99999999884
No 266
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.6e-38 Score=301.32 Aligned_cols=158 Identities=35% Similarity=0.613 Sum_probs=139.9
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999532 4699999999999999999999999999999999999999999998653 346899
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++|++. +++ .|+.+++ |||||+||++|||||+.+|++|||||||++
T Consensus 81 ~~q~~~--~~~-~tv~~~l-------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 81 LPQDDE--LFS-GSIAENI-------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred ECCCCc--ccc-CcHHHHC-------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 999873 555 3766654 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 484 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
||+.++..+.+.|.++ +.|||+||||.+++. .|+++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 9999999999999765 469999999999985 7999999999864
No 267
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-38 Score=316.73 Aligned_cols=200 Identities=24% Similarity=0.284 Sum_probs=166.1
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++|+++||++.| +++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 6 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYY-NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEE-CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 378999999999 567899999999999999999999999999999999999985 489987642
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC-CCH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+ .+. +.+.+++..+++.. .....++.+|||||+|||+|
T Consensus 85 ~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 135999999874 565 7888876432 11 121 23556788888742 12234678999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE-----CCeEEEEcCCHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE-----KKNIRKFNGDFDD 537 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~-----~g~i~~~~g~~~~ 537 (568)
||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|+ +|+++. .|+.++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~ 240 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQ 240 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999998 588874 567666
Q ss_pred H
Q psy16366 538 Y 538 (568)
Q Consensus 538 ~ 538 (568)
+
T Consensus 241 ~ 241 (259)
T PRK14260 241 I 241 (259)
T ss_pred H
Confidence 5
No 268
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.6e-38 Score=301.31 Aligned_cols=163 Identities=33% Similarity=0.503 Sum_probs=144.1
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999533 3799999999999999999999999999999999999999999998764 2458999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
+|++. +++ .++.+++ +..|||||+||++||||++.+|++|||||||++|
T Consensus 81 ~q~~~--~~~-~tv~~~i----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 81 NQRPY--LFD-TTLRNNL----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred ccCCe--eec-ccHHHhh----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 99863 443 4666554 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 485 DIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 485 D~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+.+.+.+.+.|.++ +.|||++|||.+++. .|+++++|++|+++.
T Consensus 130 D~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 130 DPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 999999999999876 579999999999996 699999999999864
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.8e-38 Score=296.72 Aligned_cols=158 Identities=28% Similarity=0.423 Sum_probs=131.8
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
|+++|+++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++... +. .
T Consensus 1 l~~~~l~~~~-~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~-~~------------~ 66 (163)
T cd03216 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE-VS------------F 66 (163)
T ss_pred CEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-CC------------c
Confidence 4689999999 56789999999999999999999999999999999999999999998765321 00 0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
....+.. + ..+++ +.+|||||+||++||||++.+|++|||||||++||+.+++.+.++
T Consensus 67 ~~~~~~~-----------~---~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 67 ASPRDAR-----------R---AGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV 124 (163)
T ss_pred CCHHHHH-----------h---cCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 0111100 0 00110 112999999999999999999999999999999999999999999
Q ss_pred HHhc---CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 496 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 496 l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|+++ +.|||++|||.+++..+|+++++|++|++.
T Consensus 125 l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 125 IRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9876 579999999999999999999999999985
No 270
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.5e-38 Score=314.05 Aligned_cols=190 Identities=31% Similarity=0.383 Sum_probs=159.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
+.+++++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++... +.+..+. ..+++.
T Consensus 23 l~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEV-GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPE 98 (224)
T ss_pred hhhhhhhhhc-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCC
Confidence 7789999999 67889999999999999999999999999999999999999999999886532 2211111 235567
Q ss_pred CCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q psy16366 416 DTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488 (568)
Q Consensus 416 ~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~ 488 (568)
.|+.+++... .+... +.+.++++.+++..... .++.+|||||||||+|||+|+.+|++|||||||+|||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 7888876432 22222 23556788899986655 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 489 IDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 489 ~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+..+.++|.++ +.|||+||||.+++..+|+++++|++|+++.
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999988765 5799999999999999999999999999864
No 271
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=313.29 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=163.5
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEEecCCCCCCCCC
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~~q~~~~~l~~~ 415 (568)
-++|+||+|+.||++.|+|-+|||||||+|+|.++++|+.|+|.+.. +.+++++||++. |+|.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccc
Confidence 46899999999999999999999999999999999999999998653 457999999975 8999
Q ss_pred CCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q psy16366 416 DTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488 (568)
Q Consensus 416 ~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~ 488 (568)
.|+.++.... .+.+. +.+.++|+.+||.++.+. +|.+|||||||||-|||||+.+|+|||||||||+|||--
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 9999986432 34443 456789999999999876 679999999999999999999999999999999999955
Q ss_pred H----HHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH--------HHHHHHHHHHH
Q psy16366 489 I----DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF--------DDYREKLLTSL 546 (568)
Q Consensus 489 ~----~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~--------~~~~~~~~~~~ 546 (568)
+ +.|.++-.++++||||||||++.+.++.+||.+|+||+|+.. |++ ++|...+.+.+
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~-Gtp~eIl~~PAndYV~~Fv~~v 268 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV-GTPEEILLNPANDYVRDFVRNV 268 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe-CCHHHHHcCccHHHHHHHHhcC
Confidence 4 455555566789999999999999999999999999999864 443 45655555444
No 272
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.5e-38 Score=312.59 Aligned_cols=188 Identities=26% Similarity=0.323 Sum_probs=156.4
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC----CccEEEECC---------CeeEEEEecCCCCCCCCCCC
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGELRKSP---------RLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~---------~~~i~~~~q~~~~~l~~~~~ 417 (568)
+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++. +..++|++|++...+++..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899998653 24699999997433556678
Q ss_pred HHHHHHHh---cCCC----HHHHHHHHHhCCCCC--ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q psy16366 418 PCEYLMKL---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488 (568)
Q Consensus 418 ~~e~l~~~---~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~ 488 (568)
+.+++... .+.. .+.+.++++.+++.. .....++.+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 77765321 2221 234677899999973 22234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 489 IDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 489 ~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
...+.+.|.++ +.|||+||||++++..+|+++++|.+|++.. .|+.+++.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 214 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE-RGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999888754 5699999999999999999999999999974 56666553
No 273
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-38 Score=306.55 Aligned_cols=178 Identities=29% Similarity=0.410 Sum_probs=153.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
+|+++|++++| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 ml~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEe-CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998753 2368999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+|++. +++..|+.+++.... ......+.++++.+++....+ +++..|||||+||++||||++.+|++|||||||+
T Consensus 80 ~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSG--INPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred ccccc--cCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99763 667789988865321 112345778899999976554 5789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERLIRET 516 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~ 516 (568)
+||+.++..+.++|.++ +.|||+||||..++...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 99999999999999864 57999999999999764
No 274
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4e-38 Score=289.55 Aligned_cols=144 Identities=48% Similarity=0.830 Sum_probs=137.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
++++|+++.| ++.++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++....++|++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEE-CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 4689999999 456899999999999999999999999999999999999999999999988778899887
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
||+||+||++|||+|+.+|+++||||||++||+.++..+.+.
T Consensus 71 --------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 112 (144)
T cd03221 71 --------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112 (144)
T ss_pred --------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 496 IKNYQGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|++++.|||+|||+.+++..+|+++++|++|+
T Consensus 113 l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 113 LKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99988899999999999999999999999885
No 275
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-38 Score=314.13 Aligned_cols=205 Identities=23% Similarity=0.324 Sum_probs=163.2
Q ss_pred EEeCCCceeeeeeeEEEe-----CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLD-----MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~-----~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~ 417 (568)
|+|++....+.+++|++. +|++++|+||||||||||+++|+|+++|++|+|.+... .|+|++|++. ++...|
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCC
Confidence 356554556777777776 79999999999999999999999999999999988765 7999999864 345678
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 418 PCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 418 ~~e~l~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
+.+++.... ........+++..+++....+ +++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 888764321 112234567889999986555 4789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE-EEcCCHHH---HHHHHHHHHhhhhh
Q psy16366 495 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR-KFNGDFDD---YREKLLTSLGEAMV 551 (568)
Q Consensus 495 ~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~-~~~g~~~~---~~~~~~~~~~~~~~ 551 (568)
+|+++ +.|||+||||++++..+||++|+|+++... ...+.+.+ ..+.+++.++..+.
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFR 221 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEe
Confidence 98775 579999999999999999999999765433 23344444 44555665555443
No 276
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.7e-38 Score=312.47 Aligned_cols=176 Identities=28% Similarity=0.325 Sum_probs=151.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEecCCCCCCCCCCCHHHHHHHh
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKL 425 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q~~~~~l~~~~~~~e~l~~~ 425 (568)
|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ...+|++|++. +++..|+.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999999999999987532 23589999874 77778998886432
Q ss_pred -----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 426 -----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 426 -----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
.+... ..+.++++.+++..... +++.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 12222 23567899999986554 478999999999999999999999999999999999999999999988
Q ss_pred Hhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 497 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 497 ~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 764 5799999999999999999999999999974
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=345.44 Aligned_cols=196 Identities=21% Similarity=0.289 Sum_probs=167.4
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEe
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFD 405 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~ 405 (568)
++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 ~~nl~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSF-PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEe-CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 36899999 567899999999999999999999999999999999999999999998653 23599999
Q ss_pred cCCCCCCCCCCCHHHHHHHh-c---CC--C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL-F---NL--P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~-~---~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++. +++..|+.+++... . +. . .+.+.+++..+++....+ +++.+|||||||||+|||||+.+|+||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-AKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9873 67778998876531 1 11 1 124567899999986554 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .++.+++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecChhhC
Confidence 999999999999999999988764 5799999999999999999999999999974 4555444
No 278
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5e-38 Score=308.91 Aligned_cols=187 Identities=22% Similarity=0.304 Sum_probs=152.7
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRI 401 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i 401 (568)
.+.|+.+.|+++.++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999996567899999999999999999999999999999999999999999987632 1458
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCcc----------ccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++|++. ++ ..++.+++............+.+..+++.... ...++..|||||||||+|||+|+.+
T Consensus 82 ~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 82 AYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred EEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999874 45 56888877543222334445566666654321 1235789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHH--HH---HhcCceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 472 PDILILDEPTNNLDIESIDALAE--AI---KNYQGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~--~l---~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|++|||||||++||+.++..+.+ ++ ++.+.|||++|||.+++. .|+++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 99999999999999999988776 33 344689999999999986 699999998873
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.1e-38 Score=303.83 Aligned_cols=168 Identities=32% Similarity=0.466 Sum_probs=145.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECC------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~------------~~~i 401 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+ ++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSV-GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEe-CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4689999999 467899999999999999999999999999999999999 579999998643 1249
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+|++|++. +++..++.+++ ......|||||+|||+|||+|+.+|++|||||||
T Consensus 80 ~~v~q~~~--~~~~~~~~~~l-------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 80 FLAFQYPP--EIPGVKNADFL-------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred EEeecChh--hccCccHHHHH-------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999863 56666655443 1123589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHh-hCceEEEEECCeEEEE
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRE-TDCELWALEKKNIRKF 531 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~-~~~~i~~l~~g~i~~~ 531 (568)
++||+.+...+.++|.++ +.|||++|||++++.. +|+++++|++|++...
T Consensus 133 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999765 5799999999999988 7999999999999754
No 280
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=313.60 Aligned_cols=202 Identities=20% Similarity=0.226 Sum_probs=169.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
++.+.++++++.| ++.++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFY-GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEe-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5679999999999 677899999999999999999999999999999999999987 799987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHHhCCCCCcc---ccCCCCCCCHhHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGMFGLPSYA---HTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~---~~~~~~~L~~~~l~~~~---~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. ++ ..|+.+++.... ... ...+.++++.+++.... ...++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 235899999874 55 478888775321 111 23567789999985421 1246789999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE--------CCeEEEEcCCH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE--------KKNIRKFNGDF 535 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~--------~g~i~~~~g~~ 535 (568)
|||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++. .|+.
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~ 240 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPT 240 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCH
Confidence 9999999999999999999999999999999876 4699999999999999999999996 789875 4676
Q ss_pred HHHH
Q psy16366 536 DDYR 539 (568)
Q Consensus 536 ~~~~ 539 (568)
+++.
T Consensus 241 ~~~~ 244 (261)
T PRK14263 241 AQIF 244 (261)
T ss_pred HHHH
Confidence 6654
No 281
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.4e-38 Score=305.59 Aligned_cols=180 Identities=31% Similarity=0.470 Sum_probs=152.5
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~~ 405 (568)
++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSR-GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 4689999999 5678999999999999999999999999999999999999999999976542 4689999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|++ .+++..|+.+++... .+.....+.++++.+++..... .++.+|||||||||+||||++.+|++|||||||+
T Consensus 80 q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 80 HLP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cCc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 875 367778998876432 1222345778899999987655 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEE
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~ 521 (568)
+||+.++..+.++|.++ +.|||+||||...+. |++++
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~--~~~~~ 196 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV--EAREL 196 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc--ceEEe
Confidence 99999999999999875 679999999986553 45544
No 282
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=311.97 Aligned_cols=190 Identities=22% Similarity=0.323 Sum_probs=159.1
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh-
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL- 425 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~- 425 (568)
..+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. +++++|.+ .+++..|+.+++...
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~--~~~~~~tv~enl~~~~ 110 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISA--GLSGQLTGIENIEFKM 110 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEeccc--CCCCCCcHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999988753 56677764 356677888876421
Q ss_pred --cCCCHHH----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 426 --FNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 426 --~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
.+..... +..++..+++..... .++.+|||||+|||+||+||+.+|++|||||||+|||+.+...+.+.|.++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 2333322 345677888876654 478999999999999999999999999999999999999999999988765
Q ss_pred ---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 500 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 500 ---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
+.|||+||||.+++..+|+++++|++|++.. .|+.+++....
T Consensus 190 ~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~~~~ 234 (264)
T PRK13546 190 KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD-YGELDDVLPKY 234 (264)
T ss_pred HHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE-eCCHHHHHHHh
Confidence 6799999999999999999999999999974 57777776544
No 283
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.5e-38 Score=301.50 Aligned_cols=172 Identities=33% Similarity=0.380 Sum_probs=149.8
Q ss_pred CeEEEEeeEEEeCC-----CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC--------C
Q psy16366 334 PVLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP--------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-----~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~--------~ 398 (568)
+.++++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++. +
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35789999999954 267999999999999999999999999999999999999 99999998643 3
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
..++|++|++. +++..|+.+++.... .+ ..|||||+|||+|||||+.+|++||||
T Consensus 82 ~~i~~~~q~~~--~~~~~t~~~~i~~~~------------~~-----------~~LS~G~~qrv~laral~~~p~illlD 136 (194)
T cd03213 82 KIIGYVPQDDI--LHPTLTVRETLMFAA------------KL-----------RGLSGGERKRVSIALELVSNPSLLFLD 136 (194)
T ss_pred heEEEccCccc--CCCCCcHHHHHHHHH------------Hh-----------ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 46999999863 677788888764210 00 179999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~ 530 (568)
|||++||+.++..+.+.|.++ +.|||+||||.+ .+..+||++++|++|++..
T Consensus 137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 999999999999999999765 569999999996 7888999999999999864
No 284
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.7e-38 Score=333.43 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=178.7
Q ss_pred CCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC----ccEEEECC--------
Q psy16366 333 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN----KGELRKSP-------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~----~G~i~~~~-------- 397 (568)
.++|+++|+++.|... ..+++||||+|.+||++||||.+||||||+++.|.|++++. +|+|.++.
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 3589999999999432 25999999999999999999999999999999999999987 79997653
Q ss_pred -------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHHhCCCCCcccc-CCCCCCCHhHHHH
Q psy16366 398 -------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSYAHT-IPIRDLSGGQKAR 461 (568)
Q Consensus 398 -------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~----~~~~~~~L~~~~l~~~~~~-~~~~~LSgGqkqR 461 (568)
..+|+|+||+|...+.+-+++.+.+... .+.. ..++.++|+.+||++.... +++++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 2579999999988888888887655432 1222 2345678999999875543 4789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH--
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF-- 535 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~-- 535 (568)
|+||+||+.+|++||+||||++||+..+..+.++|+++ +.++|+||||+..+.++||+++||++|++++. |+.
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~-G~~~~ 241 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET-GPTEE 241 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe-cCHHH
Confidence 99999999999999999999999999999999988754 67999999999999999999999999999874 443
Q ss_pred ------HHHHHHHHHHHh
Q psy16366 536 ------DDYREKLLTSLG 547 (568)
Q Consensus 536 ------~~~~~~~~~~~~ 547 (568)
+.|.+.++....
T Consensus 242 i~~~p~hpYT~~Ll~a~p 259 (539)
T COG1123 242 ILSNPQHPYTRGLLAAVP 259 (539)
T ss_pred HHhccCCcccHHHHhhCC
Confidence 345555555543
No 285
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=311.44 Aligned_cols=200 Identities=22% Similarity=0.310 Sum_probs=165.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~------------ 397 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|++. |++|+|.++.
T Consensus 3 ~l~~~~v~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYF-DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 57899999999 56789999999999999999999999999999999999864 4899987543
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++. ++.+++... .+. .. +.+..+++.+++... ....++..|||||+||++||
T Consensus 82 ~~~~i~~~~q~~~--~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPN--PFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCc--cCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 235999999874 5654 888876432 111 11 235567888887431 12347899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|++.. .|+.+++.
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE-SGLTDQIF 233 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE-eCCHHHHH
Confidence 9999999999999999999999999999999875 4699999999999999999999999999974 57776653
No 286
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-38 Score=293.59 Aligned_cols=207 Identities=28% Similarity=0.381 Sum_probs=170.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+|+++|++++. .++.++++|||++++||+++|+||||||||||||.|+|.+.|++|++.++.. .+.+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 57899999999 6789999999999999999999999999999999999999999999987542 34678
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---c--CCC--H--HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc----
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---F--NLP--Y--EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---- 470 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~--~~~--~--~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~---- 470 (568)
++|+.. +-...|+.|.+... . +.. + ..+++.|...++.++..+ ...+|||||||||.|||+|++
T Consensus 80 lpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 LPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-DYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred cccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-chhhcCchHHHHHHHHHHHHHccCC
Confidence 899864 33335777765421 1 111 2 236788999999887765 568999999999999999987
Q ss_pred --CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH-HHHHHHH
Q psy16366 471 --NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLT 544 (568)
Q Consensus 471 --~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~-~~~~~~~ 544 (568)
++++|+|||||+.||+..+..++++.+++ +++|++|-||++++..|||+|++|.+|+++. .|.+++ +..+.++
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~vlt~Etl~ 235 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDVLTDETLE 235 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHhcCHHHHH
Confidence 34589999999999999999999988876 5789999999999999999999999999985 565555 5555444
Q ss_pred HH
Q psy16366 545 SL 546 (568)
Q Consensus 545 ~~ 546 (568)
..
T Consensus 236 ~v 237 (259)
T COG4559 236 RV 237 (259)
T ss_pred HH
Confidence 43
No 287
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=330.23 Aligned_cols=202 Identities=23% Similarity=0.319 Sum_probs=167.3
Q ss_pred CCCeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCC
Q psy16366 332 PPPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~ 409 (568)
..++++++|+++.|+++ +++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.... ++.+.+
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~- 94 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS- 94 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc-
Confidence 34689999999999543 4699999999999999999999999999999999999999999998875431 222222
Q ss_pred CCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 410 EHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
.+++..|+.+++.. ..+.... .+..+++.+++....+ +++.+|||||||||+|||||+.+|++|||||||+
T Consensus 95 -~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 95 -GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred -ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 35566788887642 1233332 2446789999986655 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 173 gLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~-~G~~~el~ 231 (549)
T PRK13545 173 VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE-YGDIKEVV 231 (549)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999765 5799999999999999999999999999974 46665544
No 288
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9.3e-38 Score=356.01 Aligned_cols=200 Identities=28% Similarity=0.449 Sum_probs=173.2
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|..+. +..||
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5899999999953 46799999999999999999999999999999999999999999998764 45799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
|++|++. +|. .|+.|++......+.+++.++++..++.+..... ....||||||||++|||||+++|
T Consensus 531 ~v~Q~~~--lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 531 VVLQNGR--LMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred EEccCCc--cCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999984 665 4899988643335677888888888876433221 13579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||++||+.+.+.+.+.|.+++.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll 672 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELM 672 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999998999999999999975 89999999999985 57877654
No 289
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-38 Score=332.46 Aligned_cols=199 Identities=32% Similarity=0.488 Sum_probs=171.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
.++++|+++.|++++++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.++. +.+++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 456679999998777999999999999999999999999999999999999999999999874 357999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc-----CCC----CCCCHhHHHHHHHHHHHccCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT-----IPI----RDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~-----~~~----~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|+|. +|+. |+.|++... .+.+.+++.++++..|+.+.... ..+ ..|||||+|||+|||||+.+++
T Consensus 400 v~Q~p~--lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 400 VSQNPY--LFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eCCCCc--cccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999984 6654 788887543 34667888888888887654432 123 3599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++||||||+|||.++...+.+.|.+. +.|||+|||++..+.. +|+||+|++|++++ .|.++++
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~-~g~~~~L 541 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVE-QGTHEEL 541 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceec-cCCHHHH
Confidence 99999999999999999999999876 5799999999999976 68999999999985 5777765
No 290
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=305.49 Aligned_cols=198 Identities=27% Similarity=0.467 Sum_probs=167.6
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC------------CC
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS------------PR 398 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~------------~~ 398 (568)
..+++|+++||++.| +++++|+|+||+|++||+|+|+|||||||||||++++|.++|++|.+... .+
T Consensus 27 ~~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 27 INEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CCcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 456789999999999 78999999999999999999999999999999999999999999987532 25
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh-------c--CCC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL-------F--NLP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~-------~--~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
.+||+++..-...+....++.+.+... + ..+ ...+..+|+.+|+.+..+ ++..+||-||||||.|||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~-r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD-RPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc-CchhhcCHhHHHHHHHHH
Confidence 678998765444455566666644321 1 112 234667899999988555 589999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-----GGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.+|.+|||||||+|||...++.+.+.|.+.. .++|+|||..+.+..+.++++.+.+|+++.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999998763 369999999999999999999999999863
No 291
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-38 Score=295.52 Aligned_cols=157 Identities=38% Similarity=0.588 Sum_probs=138.5
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999432 2799999999999999999999999999999999999999999998654 235899
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++|++ .+++ .++.+++ |||||+|||+|||+|+.+|++|||||||++
T Consensus 81 ~~~~~--~~~~-~t~~e~l-------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 81 VPQDP--FLFS-GTIRENI-------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred EcCCc--hhcc-chHHHHh-------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 99986 3454 4665553 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 484 LDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
||+.++..+.+.|.++ +.|||++|||.+++.. |+++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999999876 4689999999999987 99999999874
No 292
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-37 Score=320.70 Aligned_cols=203 Identities=25% Similarity=0.312 Sum_probs=167.7
Q ss_pred CCCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC--------
Q psy16366 332 PPPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP-------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~-------- 397 (568)
...+|+++|++++|++ .+++|+|+||+|.+|+++||+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3468999999999953 3579999999999999999999999999999999999986 5799987521
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh--c-CCCH-H----HHHHHHHhCCCCCc---cccCCCCCCCHhHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL--F-NLPY-E----KSRRQLGMFGLPSY---AHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~-~~~~-~----~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +| ..|+.+++... + +... + .+..++..++|... ....++..||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 346999999974 55 46888887521 1 2222 1 24567888887421 1224678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+|||+++++.++||+|++|++|++++. |+++++
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~-g~~~~l 311 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA-GETKTI 311 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999999866 47999999999999999999999999999864 666665
No 293
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-37 Score=299.51 Aligned_cols=171 Identities=26% Similarity=0.311 Sum_probs=148.3
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC-------CeeEE
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP-------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~-------~~~i~ 402 (568)
.|+++|+++.|++ ++++|+++||+|.+|++++|+|||||||||||++|+|+. +|++|+|.++. +..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6889999999953 267999999999999999999999999999999999986 48999998754 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|++|++. +++..|+.+++.... .+ ..|||||+|||+|||||+.+|++|||||||+
T Consensus 83 ~~~q~~~--~~~~~tv~~~l~~~~---------~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~ 137 (192)
T cd03232 83 YVEQQDV--HSPNLTVREALRFSA---------LL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTS 137 (192)
T ss_pred EecccCc--cccCCcHHHHHHHHH---------HH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCc
Confidence 9999863 677788888865210 00 0799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEEC-CeEEE
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEK-KNIRK 530 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~-g~i~~ 530 (568)
+||+.+...+.+.|.++ +.|||+||||.+ .+..+||++++|++ |+++.
T Consensus 138 ~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 138 GLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 99999999999999765 579999999998 47889999999999 88864
No 294
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.4e-37 Score=311.66 Aligned_cols=202 Identities=19% Similarity=0.224 Sum_probs=162.0
Q ss_pred CCeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.+.++++|++++|++. +.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4579999999999532 5799999999999999999999999999999999999999999998643 346
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH---------HhC--CCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL---------GMF--GLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L---------~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +++ .|+.+++..........+..++ ..+ ++..... .++..|||||+||++|||||+
T Consensus 97 i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 97 LSIILQDPI--LFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred EEEECCCCc--ccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCHHHHHHHHHHHHHh
Confidence 899999873 554 4776665321111122233333 333 4443333 256899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|++|||||||++||+.+...+.++|.++ +.|||+|||+++.+.. |+++++|.+|+++. .|+.+++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~-~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE-CDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999999999999764 5799999999999986 99999999999974 577766543
No 295
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-37 Score=299.31 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=149.2
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC----------C
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP----------R 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~----------~ 398 (568)
++.++||+|.|+. ++.+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5789999999963 4579999999999999999999999999999999999999 8999987542 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
..++|++|++ .+++..|+.+++..... +. . ..++..|||||+||++|||||+.+|++||||
T Consensus 83 ~~i~~~~q~~--~~~~~~tv~~~l~~~~~---------~~-------~-~~~~~~LS~Ge~qrl~laral~~~p~llllD 143 (202)
T cd03233 83 GEIIYVSEED--VHFPTLTVRETLDFALR---------CK-------G-NEFVRGISGGERKRVSIAEALVSRASVLCWD 143 (202)
T ss_pred ceEEEEeccc--ccCCCCcHHHHHhhhhh---------hc-------c-ccchhhCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 3689999986 36777899888753210 00 2 2367899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEE-ecchHHHHhhCceEEEEECCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILV-SHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~v-sHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|||++||+.+++.+.++|.++ +.|+|++ +|+.+.+.++||++++|++|+++.
T Consensus 144 EPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 144 NSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999999999999999998865 3465555 566788889999999999999864
No 296
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.3e-38 Score=350.07 Aligned_cols=202 Identities=28% Similarity=0.404 Sum_probs=170.8
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.-++++||+|+|+.+ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|..+. |..|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 358999999999654 3699999999999999999999999999999999999999999998764 5689
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
||++|++. +|. -|+.|++... ...+.+++.+++...|........ .-..||||||||++|||||++
T Consensus 550 g~V~Q~~~--Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 550 GYVLQDPF--LFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred eEEcccch--hhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 99999973 554 5888887643 344556676666665554333222 235799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+|||||||||+||+++...+.+.|.++. .|+|+|||+...+. .||+|+||++|++++ .|+.+++..
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~-~gs~~ell~ 696 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE-QGSHEELLA 696 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceec-cCCHHHHHH
Confidence 999999999999999999999999999985 89999999999996 579999999999974 688777654
No 297
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8e-37 Score=310.89 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=159.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
..+.|+++|+++. ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. .++|++|++.
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~-- 108 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSW-- 108 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccc--
Confidence 4567999999985 35799999999999999999999999999999999999999999998865 5999999863
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+++ .++.+++..........+...+..+++..... ..++..|||||+|||+|||+|+.+|++|||||||
T Consensus 109 l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 109 IMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred ccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 555 48888765322122223334445455432111 1235799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 482 NNLDIESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||+.++..+.+.+ ..+ +.|||+||||++++. .|+++++|.+|+++. .|+.+++.+
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999888754 333 579999999999985 799999999999874 567766653
No 298
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=287.35 Aligned_cols=193 Identities=28% Similarity=0.425 Sum_probs=166.9
Q ss_pred CeEEEEeeEEEeCCCce--eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEe
Q psy16366 334 PVLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFD 405 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~--il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~ 405 (568)
+++.+++++.+| .+++ +|+|+|++|.+||.++++||+||||||||++++|+.+|..|+|..+.+ ..-|.+|
T Consensus 2 ~~l~~~~~sl~y-~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVF 80 (259)
T COG4525 2 CMLNVSHLSLSY-EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVF 80 (259)
T ss_pred ceeehhheEEec-CCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEe
Confidence 357789999999 4555 999999999999999999999999999999999999999999987654 3569999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .++|.+++.++... ..+++. +.+.+.|..+||.+..+ +.|.+|||||||||-|||||+.+|++|+||
T Consensus 81 Q~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 81 QNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-KYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred ccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-cceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 996 48999999887643 345543 34567899999998775 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEE--CCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALE--KKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~--~g~i~~ 530 (568)
||+.+||.-+++.+.++|-+ .++.+++||||++.+.-+++++++|. .|+|+.
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 99999999998887777643 47789999999999999999999998 467754
No 299
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.7e-37 Score=346.50 Aligned_cols=200 Identities=29% Similarity=0.416 Sum_probs=169.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-++++||+|.|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|..+. +..|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4899999987755678999999999999999999999999999999999999 9999998764 357999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccc-------c---CCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~-------~---~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|. .|+.|++... .+.+.+++.++++..++.+... + .....||||||||++|||||+++|
T Consensus 428 v~Q~~~--LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQ--LPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCc--CCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999984 665 4899988653 3466777777777666543211 1 123579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||||||||+||.++.+.+.+.|.++ +.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cCCHHHHHh
Confidence 999999999999999999999999876 5799999999999865 89999999999974 688777643
No 300
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=294.21 Aligned_cols=209 Identities=23% Similarity=0.393 Sum_probs=176.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+++++||++.| +++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|.+.+. .+++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 57899999999 7899999999999999999999999999999999999999999999987643 24555
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-c----C-C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-F----N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~----~-~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+-|.. ++....|+.+.+... + + + +...+.++++.++|....++ ...+||||||||+.+|..++++.+.
T Consensus 80 LkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr-yLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 80 LKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR-YLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH-hHHhcccchhhhhhhheeeeccCcE
Confidence 66654 466778888866421 1 1 1 23457788999999876654 7899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH-HHHHHHHhh
Q psy16366 475 LILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR-EKLLTSLGE 548 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~-~~~~~~~~~ 548 (568)
++||||.|+||......+++.|+ ++++|||+|-||+.|+..++|+|+.|++|+++ ..|++++.. .+.+.++.+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcCHHHHHHHhc
Confidence 99999999999998887777775 56899999999999999999999999999997 578888865 556666543
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.6e-37 Score=345.69 Aligned_cols=201 Identities=27% Similarity=0.390 Sum_probs=172.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.-++++||+|.|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 3589999999996556799999999999999999999999999999999999999999998764 45799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
|++|++. +|+. |+.+++......+.+++.++++.+|+....... ....||||||||++|||||+.+|
T Consensus 419 ~v~Q~~~--lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 419 MVQQDPV--VLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred EEccCCc--cccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999984 6765 889988654455677788888887765322211 23579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+++...+.+.|.++ ++|+|+|||+++.+.. ||+|++|++|+++. .|+++++.
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~-~G~~~~L~ 562 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAVE-QGTHQQLL 562 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999999999876 5799999999999875 89999999999985 57877754
No 302
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.9e-37 Score=353.38 Aligned_cols=201 Identities=30% Similarity=0.405 Sum_probs=172.4
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35899999999964 36799999999999999999999999999999999999999999998753 4679
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.+++... ...+.+++.+.++..++....... ....||||||||++|||||++
T Consensus 556 ~~v~Q~~~--lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 556 AMVDQDIF--LFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred eEEecCCh--hhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 99999974 664 5899988643 245677787777777765432211 235799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+||||||||++||..+...+.+.|.+.+.|+|+|||+++.+.. ||+|++|++|+++. .|+.+++.
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~-~G~~~~Ll 699 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQ-RGTHEELW 699 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEE-ecCHHHHH
Confidence 999999999999999999999999999888999999999999975 89999999999975 58877654
No 303
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.5e-37 Score=306.93 Aligned_cols=193 Identities=26% Similarity=0.338 Sum_probs=160.7
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEe
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFD 405 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~ 405 (568)
+++||++. .+|+|+||+|.+|++++|+||||||||||+++|+|++++ +|+|.++.. ..++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 46777764 279999999999999999999999999999999999864 899986431 3489999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc-------CC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NP 472 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~-------~p 472 (568)
|++. ++...|+.+++.... ... .+.+.++++.+++....+ +++..|||||||||+||+||+. +|
T Consensus 76 q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 76 QQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9863 455678888765321 111 234677899999976554 4789999999999999999997 67
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 221 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA-SGRRDEVL 221 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999998765 4699999999999999999999999999974 56776654
No 304
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=277.23 Aligned_cols=199 Identities=29% Similarity=0.439 Sum_probs=173.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC-----------------CC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-----------------PR 398 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-----------------~~ 398 (568)
|+++++++.| |...+|-||+|+...|+.+.++||+|+|||||+|.|.=+..|.+|+..+. .+
T Consensus 3 irv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 6899999999 77889999999999999999999999999999999999999999997642 14
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
..+|++||.. .+++.+|+.+++.. ..+++.+ ++.++|+++.|..+.++ .+-.|||||+|||+|||||++
T Consensus 82 ~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr-~plhlsggqqqrvaiaralmm 158 (242)
T COG4161 82 RNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR-YPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred Hhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc-CceecccchhhhHHHHHHHhc
Confidence 5799999986 59999999998854 2355543 35578999999988876 457899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|++||||++|||+-...+.++|+++ +.|-++|||..+++.+++.+++.|++|+|++. |+.+-+.
T Consensus 159 kpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~-g~a~~ft 229 (242)
T COG4161 159 EPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDASCFT 229 (242)
T ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee-cchhhcc
Confidence 99999999999999999999999998877 45789999999999999999999999999864 5555443
No 305
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=343.89 Aligned_cols=201 Identities=30% Similarity=0.402 Sum_probs=170.4
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|+++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|..++ +..|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999653 6799999999999999999999999999999999999999999998754 35799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cC-CCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FN-LPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~-~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +|+ .|+.+++... .+ .+.+++.+.++..++....... .-..||||||||++|||||++
T Consensus 421 ~v~Q~~~--lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVH--LFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCce--eec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999974 665 5889988643 22 4677788888877755432211 125699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+||||||||++||+++...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~-~D~Ii~l~~g~i~e-~g~~~~l~~ 567 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVE-RGTHAELLA 567 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999876 4799999999998864 89999999999975 578777643
No 306
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.1e-37 Score=296.89 Aligned_cols=164 Identities=33% Similarity=0.488 Sum_probs=138.2
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeEEEEecCCCCCCC
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLF 413 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i~~~~q~~~~~l~ 413 (568)
+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++...++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 566799999999999999999999999999999999999999999997642 2358999998743344
Q ss_pred CCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q psy16366 414 PDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 414 ~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~ 486 (568)
..|+.+++... .+... +.+.+++..+++....+ +++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 35888876431 22322 34567899999987655 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecchHH
Q psy16366 487 ESIDALAEAIKNY---QGGVILVSHDERL 512 (568)
Q Consensus 487 ~~~~~l~~~l~~~---~~tvi~vsHd~~~ 512 (568)
.++..+.++|.++ +.|||+||||+++
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999765 5699999999875
No 307
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=323.19 Aligned_cols=195 Identities=27% Similarity=0.403 Sum_probs=171.7
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Ce
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RL 399 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~ 399 (568)
.+|+++++|++++| ++.++|++|||+|++||++||+|.||||||||+|+|+|.++|++|+|.++. ..
T Consensus 5 ~~~ll~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ccceeeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35789999999999 678999999999999999999999999999999999999999999998764 24
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh------cC-CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL------FN-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~------~~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
.|+.++|+.. +++++|+.|++... ++ ++ ...++++|..+++... ...++.+||.||||.|+||||+
T Consensus 84 GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 84 GIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred CcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence 5899999975 99999999987421 11 12 2456778999998644 3458999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
..+++||||||||+.|+....+.|.+.++++ +.+||+|||.++.+.++||++.||.||+++.
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999999999888765 6799999999999999999999999999763
No 308
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.3e-37 Score=349.84 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=170.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-++++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..+. +..|||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 589999999996567899999999999999999999999999999999999999999998764 357999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~--~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +|.. |+.+++... ...+.+++.++++..++.+.... .....||||||||++||||++++
T Consensus 553 v~Q~~~--lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 553 LPQEPY--IFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EecCce--ehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 999984 6654 899988643 34566777777777666432211 12357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||++||.++...+.+.|.++ +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~-~G~~~~L~ 696 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE-QGSHDELL 696 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999876 579999999999885 589999999999974 68877654
No 309
>KOG0057|consensus
Probab=100.00 E-value=9.9e-37 Score=319.81 Aligned_cols=201 Identities=29% Similarity=0.389 Sum_probs=171.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|.|++++++|+++||+|++|+.+||+|+|||||||++|+|.+.+. .+|+|..++ |..||
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 459999999999656669999999999999999999999999999999999999 899998754 56799
Q ss_pred EEecCCCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|+||+. .+|.+ |+..++.. ....+.+++-+.++++|+.+...+. +...|||||||||+||||++.+
T Consensus 429 ~VPQd~--~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 429 VVPQDS--VLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred EeCCcc--cccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 999996 47754 77777653 2345678888888888886533222 2457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+|++||||||+||.++...+.+.+... +.|+|+|-|+++++.. ||+|+++++|++.++ |+.+++..
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 9999999999999999999999999874 5799999999999976 699999999999865 67766644
No 310
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.6e-36 Score=299.37 Aligned_cols=181 Identities=26% Similarity=0.388 Sum_probs=151.2
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEecCCCCCCCCCCCHHHHHHHh-----
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKL----- 425 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q~~~~~l~~~~~~~e~l~~~----- 425 (568)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|++........|+.+++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999987653 469999998753222346787776431
Q ss_pred --cCC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 426 --FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 426 --~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
... ....+..+++.+++....+ .++.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111 1234677899999986555 468999999999999999999999999999999999999999999999865
Q ss_pred ---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 500 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 500 ---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+.|||+||||++++..+|++++++ +|+++ ..|+.+++.+
T Consensus 160 ~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 160 AGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 469999999999999999999999 89987 4677777654
No 311
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-36 Score=293.95 Aligned_cols=176 Identities=27% Similarity=0.298 Sum_probs=149.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------eeEEEEecC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------LRIGKFDQH 407 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~i~~~~q~ 407 (568)
+|+++|++++| +++.+++ +||+|++|++++|+|+||||||||+++|+|+++|++|+|.++.. ..++|++|+
T Consensus 1 ~l~~~~l~~~~-~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNI-EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEE-CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 47899999999 4566665 99999999999999999999999999999999999999987642 348899987
Q ss_pred CCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 408 SGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
+ .++...|+.+++..... .....+..++..+++..... +++.+||||||||++||||++.+|++|||||||++||
T Consensus 79 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 79 L--GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred c--CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6 35567888887753221 12345677889999986554 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCceEEEEecchHHHHh
Q psy16366 486 IESIDALAEAIKN---YQGGVILVSHDERLIRE 515 (568)
Q Consensus 486 ~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~ 515 (568)
+.+...+.+.|.+ .+.|||+||||.+++..
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 9999999998863 36799999999999876
No 312
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-36 Score=346.55 Aligned_cols=202 Identities=30% Similarity=0.449 Sum_probs=171.9
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.-++++||+|+|++ .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..|
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 35899999999964 35799999999999999999999999999999999999999999998764 4579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.|++.... +.+.+++.++++..++.+..... ....||||||||++|||||++
T Consensus 542 ~~v~Q~~~--lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 542 GYVPQDPR--LFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred EEECCChh--hhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999984 665 48999886432 35677788887777665432221 235799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+++...+.+.|.+. +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e-~G~~~eLl~ 688 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVA-DGPKDQVLE 688 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEe-eCCHHHHHH
Confidence 99999999999999999999999999876 579999999999985 689999999999985 578777654
No 313
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=300.35 Aligned_cols=194 Identities=25% Similarity=0.370 Sum_probs=163.3
Q ss_pred CeEEEEeeEEEeCCC--------ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEe
Q psy16366 334 PVLGLHDVTFGYPGG--------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--------~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~ 405 (568)
++++++|+++.|+-. ..+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|.+.+..-..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh---
Confidence 589999999999532 268999999999999999999999999999999999999999999876433100
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
+ + .....+.+.++|..+|+......+.+++|||||+||++|||||+.+|+++++|||||+||
T Consensus 80 ------~----~--------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 80 ------L----S--------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred ------c----c--------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 0 0 001234577899999998766667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEc-------CCHHHHHHHHHHHHhh
Q psy16366 486 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFN-------GDFDDYREKLLTSLGE 548 (568)
Q Consensus 486 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~-------g~~~~~~~~~~~~~~~ 548 (568)
...+..+.++|.++ +.|.++||||+..+..+||++.+|..|++++.. .+.+.|.+.++.++..
T Consensus 142 vSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 142 VSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred hhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 99988888888654 679999999999999999999999999998753 2445677777777653
No 314
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.2e-36 Score=340.72 Aligned_cols=196 Identities=24% Similarity=0.423 Sum_probs=159.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc---CCCccEEEECCCeeEEEEecCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL---TPNKGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~---~p~~G~i~~~~~~~i~~~~q~~~ 409 (568)
..+|.++|++++| +++++|+|+||+|.+|+++|||||||||||||||+|+|.. .|+.|+| +|+.|+..
T Consensus 175 ~~~I~i~nls~~y-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I--------~~~~Q~~~ 245 (718)
T PLN03073 175 IKDIHMENFSISV-GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI--------LHVEQEVV 245 (718)
T ss_pred ceeEEEceEEEEe-CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE--------EEEeccCC
Confidence 4579999999999 5778999999999999999999999999999999999964 4566654 45555421
Q ss_pred CCCCCCCCHHHH-----------------------------------------------------HHHhc---C--CCHH
Q psy16366 410 EHLFPDDTPCEY-----------------------------------------------------LMKLF---N--LPYE 431 (568)
Q Consensus 410 ~~l~~~~~~~e~-----------------------------------------------------l~~~~---~--~~~~ 431 (568)
..+.++.+. +...+ + ....
T Consensus 246 ---g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 246 ---GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred ---CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 111121110 00000 0 0123
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchH
Q psy16366 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 511 (568)
Q Consensus 432 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 511 (568)
++..+|..+||......+++.+|||||||||+||++|+.+|+||||||||||||+.++.+|.+.|+++++|||+||||++
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45667888999754445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 512 LIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 512 ~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++..+|+++|+|++|++..+.|+|+.|..
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999889999988754
No 315
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-36 Score=337.89 Aligned_cols=201 Identities=28% Similarity=0.421 Sum_probs=172.9
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
+.++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999653 5799999999999999999999999999999999999999999998754 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc---------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT---------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~---------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++|++. +|. .|+.+++... ...+.+++.++++.+++.+.... .....||||||||++||||++++
T Consensus 417 ~~v~Q~~~--lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 417 SVVSQRVH--LFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred eEEcccch--hhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999974 665 4889987543 24567788889999988765432 12457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||++||+++...+.+.|.++ +.|+|+|||+++.+.. ||++++|++|++++ .|+.+++.
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~-~g~~~~l~ 561 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIE-QGTHQELL 561 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 9999999999999999999999999876 5799999999999865 89999999999985 57776653
No 316
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=323.56 Aligned_cols=201 Identities=30% Similarity=0.442 Sum_probs=173.7
Q ss_pred eEEEEeeEEEeCCCc-eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~-~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.++++||+|+|+++. ++|+|+||++.+||++||+|++|||||||+++|+|.++|++|+|..+. +..|+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999997765 699999999999999999999999999999999999999999998754 23688
Q ss_pred EEecCCCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHHhCCCCCccccCC----------CCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTIP----------IRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~~~~~L~~~~l~~~~~~~~----------~~~LSgGqkqRv~lA~al~~~ 471 (568)
+++|.+ ++|. .|+.+++.. ..+.+.+++.++|+.+||.+.....| -..|||||+||++|||+|+++
T Consensus 416 vl~Qr~--hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRV--HLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccch--HHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 899986 4665 478888754 34567788999999999876554432 357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+++||||||.|||+.+.+.+++.|.+. ++|+|||||++..++ .||+|++|++|++++ +|++.++..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeeee-cCCHHhhhc
Confidence 9999999999999999999999999765 679999999999997 479999999999974 687776543
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.1e-36 Score=362.91 Aligned_cols=206 Identities=22% Similarity=0.301 Sum_probs=179.1
Q ss_pred CCeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeE
Q psy16366 333 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i 401 (568)
.+.|+++||++.|+ +++.+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 46899999999994 357899999999999999999999999999999999999999999998653 2469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
||++|++ .+++.+|+.|++.. ..+.+ .+++.++|+.+||.+..+ +++.+|||||||||+||+||+.+|+|
T Consensus 1006 G~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 37888999998743 22333 234677899999987665 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
|||||||+|||+.+++.+.++|+++ +.|||++|||++++..+||++++|.+|++.. .|+.+.+++..
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~-~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC-SGTPLFLKNCF 1151 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHHhc
Confidence 9999999999999999999999876 5699999999999999999999999999974 57777665543
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=281.46 Aligned_cols=190 Identities=28% Similarity=0.398 Sum_probs=164.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
++++++.+.- ++.++|+|+||++++||+++|+||+|||||||+|+++-+++|++|++.+.+ +..|+|+
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 4455554443 567899999999999999999999999999999999999999999998753 4678999
Q ss_pred ecCCCCCCCCCCCHHHHHHH-----hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMK-----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~-----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.|.|. +|++ |+.+++.. ....+...+...|++|+++.....+++.+||||||||++|+|-|..-|+||||||
T Consensus 83 ~Q~pa--Lfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 83 AQTPA--LFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred HcCcc--cccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 99985 7765 67776642 2233556677899999999887788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
||++||+.+.+.+.++|..| ..+|++||||.+...+.++++|-+..|.+-
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999999999999776 469999999999988999999999998764
No 319
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.7e-36 Score=338.27 Aligned_cols=201 Identities=28% Similarity=0.435 Sum_probs=168.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|+|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..|+
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 3589999999996556799999999999999999999999999999999999999999998764 35799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++... .+.+.+++...++.+++...... .....||||||||++|||||+++
T Consensus 413 ~v~Q~~~--lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 413 VVFQDAG--LFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred EEecCcc--ccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999974 664 5889987643 23456677777776665432211 12346999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||+.+...+.+.|.+. ++|||+|||+.+.+. .||++++|++|++.. .|+.+++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~-~g~~~~l~ 557 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVE-SGSFDELV 557 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999876 579999999999885 589999999999975 56666653
No 320
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-36 Score=334.65 Aligned_cols=201 Identities=33% Similarity=0.473 Sum_probs=165.9
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 369999999999643 5899999999999999999999999999999999999999999998753 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCC-----------CCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~-----------l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|+. |+.+++.... ..+.+++.+.++..+ ++.... .....||||||||++||||++
T Consensus 395 ~~v~q~~~--lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 395 GYLPQDVE--LFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALARALY 470 (544)
T ss_pred EEecCCcc--cccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHHHHHh
Confidence 99999974 6654 8889886322 244555555444443 332222 245789999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|++|||||||++||+++.+.+.+.|.++ +.|+|+|||+.+.+. .||++++|++|+++. .|+.+++.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIAR-FGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEe-eCCHHHHhh
Confidence 999999999999999999999999999875 479999999999875 699999999999974 577766543
No 321
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.2e-36 Score=343.87 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=168.1
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +.+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35899999999964 35799999999999999999999999999999999999999999998764 357
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~ 469 (568)
|+|++|++. +|. .|+.+++... ...+.+++.++++..++.+..... ....||||||||++||||++
T Consensus 557 i~~v~Q~~~--lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPV--LFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCcc--ccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999984 564 5899988643 234567777888877765432211 23579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|+||||||||++||.++...+.+.....+.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive-~Gt~~eL~~ 702 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVE-MGTHKQLME 702 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh-CCEEEEEECCEEEE-eeCHHHHHh
Confidence 9999999999999999999999988333336799999999999864 89999999999975 577776543
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.9e-36 Score=284.79 Aligned_cols=154 Identities=29% Similarity=0.349 Sum_probs=134.4
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCH
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~ 418 (568)
.||++.| +++.+++++ |+|++|++++|+||||||||||+|+|+|+++|++|+|.++. ..++|++|++.
T Consensus 4 ~~l~~~~-~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRY-GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-ITPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEE-CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-EEEEEEcccCC---------
Confidence 4789999 678889884 99999999999999999999999999999999999999875 35888887541
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 419 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 419 ~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
||||||||++|||+|+.+|+++||||||++||+.++..+.+.|.+
T Consensus 72 -----------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 72 -----------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred -----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876
Q ss_pred c----CceEEEEecchHHHHhhCceEEEEECCeEE-EEcCCHHHHH
Q psy16366 499 Y----QGGVILVSHDERLIRETDCELWALEKKNIR-KFNGDFDDYR 539 (568)
Q Consensus 499 ~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~-~~~g~~~~~~ 539 (568)
+ +.|||+||||++++..+|+++++|+++..+ ..-|++..++
T Consensus 117 ~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 117 LSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 5 379999999999999999999999987553 3334444443
No 323
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.2e-36 Score=335.88 Aligned_cols=199 Identities=27% Similarity=0.399 Sum_probs=169.0
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5899999999964 36799999999999999999999999999999999999999999998764 35699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +| +.|+.+++.... ..+.+++.+.++.+|+....... .-..||||||||++||||++.
T Consensus 410 ~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVV--LF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCcc--cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999984 55 458999886432 45677788888887765432211 124699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+||||||||++||..+.+.+.+.|.++ +.|+|+|||+...+. .||++++|++|++.. .|+.+++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~-~g~~~~l 554 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVE-RGTHNEL 554 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEe-eCCHHHH
Confidence 99999999999999999999999999887 579999999998875 589999999999975 4666654
No 324
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.4e-36 Score=333.17 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 3589999999996556799999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCC-----------CccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~-----------~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +|. .|+.+++... ...+.+++.+.+...++. .... .....||||||||++|||||+.
T Consensus 413 ~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 413 TVFQDAG--LFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEccCCc--cCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhc
Confidence 9999974 554 5888988643 233455555555444332 2222 2456899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+.+.+.+.+.|.+. +.|||+|||+.+.+. .||++++|++|++.. .|+.+++.+
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 558 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIE-KGSFQELIQ 558 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEE-ECCHHHHHH
Confidence 99999999999999999999999999876 579999999999996 599999999999974 577777643
No 325
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.2e-36 Score=337.95 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=164.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
..++++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|....+..++|++|++. ++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~ 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY--MT 527 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC--CC
Confidence 4799999999996566899999999999999999999999999999999999999999998877788999999974 56
Q ss_pred CCCCHHHHHHHhc--------CCCHHHHHHHHHhCCCCCccccCC---------CCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 414 PDDTPCEYLMKLF--------NLPYEKSRRQLGMFGLPSYAHTIP---------IRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 414 ~~~~~~e~l~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~---------~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
+. |+.+++.... +...+++.++++.+++...... + ...||||||||++|||||+.+|++||
T Consensus 528 ~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 LG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred Cc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55 8888875321 2345667888999998765443 3 36899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
|||||++||+.+.+.+.+.+++.+.|||+||||++++ ..||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999889999999999997 57999999973
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.2e-36 Score=360.31 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=177.1
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
.+|+++||++.|++ .+.+++||||+|.+||++||+||||||||||+|+|+|+++|++|+|..++ +..||
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 47999999999943 26799999999999999999999999999999999999999999998653 24599
Q ss_pred EEecCCCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++ .+++.+|+.|++.. ..+.+.. .+.++|+.++|..+.+ +++++|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-k~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-RLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999986 47788999998743 2344332 3456799999987665 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
||||||+|||+.+++.+.+.|.+. +.|||++||+++++..+|+++++|.+|+++ ..|+.+++++..
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence 999999999999999999998764 569999999999999999999999999997 457777765543
No 327
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.8e-36 Score=311.72 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=172.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.+.++++++++.| ++..+.++|||+|++||+.||+|.||||||||+++|.|+++|++|+|+++. +..
T Consensus 2 ~~~l~~~~itK~f-~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 2 EPALEMRGITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred CceEEEeccEEEc-CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 3578999999999 478899999999999999999999999999999999999999999998764 356
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcC------CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFN------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~------~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
||+++||+. |++..|+.|++..... .+ .+++.++..++||+-..+. .+.+||-||||||.|.++|.+
T Consensus 81 IGMVhQHF~--Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~-~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 81 IGMVHQHFM--LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDA-KVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred CcEEeeccc--cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccc-eeecCCcchhHHHHHHHHHhc
Confidence 999999984 8999999998753221 12 2456678899999866654 789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|++|||||||+-|-|...+.|.+.|+.+ ++|||+|||-+..+.++||++-||..|+++.
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999999999998765 7899999999999999999999999999864
No 328
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.4e-36 Score=333.91 Aligned_cols=201 Identities=31% Similarity=0.486 Sum_probs=169.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-++++||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|..++ +.+|++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 489999999996578999999999999999999999999999999999999999999998743 467999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~-------~~---~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|. .|+.+++.... +.+.+++.++++..++.+.. ++ .....||||||||++||||++.+|
T Consensus 408 V~Qd~~--LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPL--LFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Ecccce--eec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999974 776 68999886432 35666777666655433211 11 123579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+||||||||++||+++...+.+.+.+. +.|+|+|+|.+..+.. ||+|++|++|++++ .|+.+++..
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e-~G~h~eLl~ 552 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE-RGTHEELLA 552 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEE-ecCHHHHHH
Confidence 999999999999999999999999754 4599999999999987 89999999999875 578777654
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=278.36 Aligned_cols=202 Identities=28% Similarity=0.447 Sum_probs=178.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
+++|.++||+++| ++..+++++||+|.+||.-+|+||||||||||+.+|+|..+|+.|++.+.. +.
T Consensus 3 ~~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 3 PIILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred CceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 3689999999999 788999999999999999999999999999999999999999999998754 34
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhcC------------C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLFN------------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~~------------~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
.||.-||.|. .|...|+++++.-..+ . ....+.+.|+..||....+. +...||.||||++.|
T Consensus 82 GIGRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-~A~~LSHGqKQwLEI 158 (249)
T COG4674 82 GIGRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEI 158 (249)
T ss_pred ccCccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-hhhhhccchhhhhhh
Confidence 5888899885 8899999998742111 1 12357789999999987764 789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+..++++|++|+||||++|+-.+......++|+... .+|++|.||+.|+.++++++-+|+.|.+. .+|+.++..
T Consensus 159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL-~EGsld~v~ 234 (249)
T COG4674 159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL-AEGSLDEVQ 234 (249)
T ss_pred heeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee-ecccHHHhh
Confidence 999999999999999999999999999999998874 58999999999999999999999999985 588887764
No 330
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-35 Score=330.94 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=167.2
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 358999999999643 5799999999999999999999999999999999999999999998753 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.+++... ...+.+++...++..++...... .....||||||||++||||+++
T Consensus 392 ~~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 392 AVVSQTPF--LFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred EEEccCCe--ecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999974 665 4889988643 23456666677766665422111 1246799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+. .||++++|++|+++. .|+.+++.
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 537 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQ-RGNHDQLA 537 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEE-ecCHHHHH
Confidence 99999999999999999999999999875 579999999999886 489999999999974 57766553
No 331
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-35 Score=330.14 Aligned_cols=196 Identities=23% Similarity=0.253 Sum_probs=162.1
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 3689999999996556799999999999999999999999999999999999999999998653 34799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----CCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----PIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++|++. +|.. |+.++ ....+.+.+.+.++.+++....... ....||||||||++||||++++|++||||
T Consensus 401 ~v~q~~~--lf~~-ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 401 AVFTDFH--LFDQ-LLGPE---GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred EEecChh--HHHH-hhccc---cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999874 5543 33333 1123455677788888887543210 02489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 479 EPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
|||++||+++...+.+.|.+ .+.|||+|||+.+.+. .||++++|++|++.+..++-.
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 99999999999998887753 3689999999998875 689999999999998877643
No 332
>KOG0058|consensus
Probab=100.00 E-value=6.3e-36 Score=323.86 Aligned_cols=202 Identities=32% Similarity=0.436 Sum_probs=166.2
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|.||.. .++|+|+||+|++|+++|||||||+||||+.++|..++.|++|+|..++ +.+
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 469999999999753 3699999999999999999999999999999999999999999998653 468
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCC-------CCCcccc---CCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFG-------LPSYAHT---IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~-------l~~~~~~---~~~~~LSgGqkqRv~lA~al~ 469 (568)
||++.|+|. +|. -|+.|++... .+.+.+++.+..++.+ ++.-.++ .+-.+||||||||+||||||+
T Consensus 544 Ig~V~QEPv--LFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPV--LFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeeccce--eec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 999999985 665 4788887643 2445566655444322 2221111 134589999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|.||||||.||+||.++...+.++|.+. +.|||+|.|.+..++. +|+|+++++|++.+ .|+++++.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhh
Confidence 999999999999999999999999999765 5799999999999975 78999999999986 477777653
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.2e-35 Score=287.99 Aligned_cols=185 Identities=21% Similarity=0.250 Sum_probs=149.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-ECCCeeEEEEecCCCCCCCCCCCHHHHHHHh---
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 425 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~--- 425 (568)
.+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|. ..... + .+.+. ..+++..|+.+++...
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~-~~~~~--~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-L-PLGAN--SFILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-e-ccccc--cccCCcCcHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999996 44321 1 12222 3477888999887532
Q ss_pred cCCCHHHHH-HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh-c-Cce
Q psy16366 426 FNLPYEKSR-RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-Y-QGG 502 (568)
Q Consensus 426 ~~~~~~~~~-~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~-~~t 502 (568)
.+....+.. .++..++++...+ .++..||||||||++||+||+.+|++|||||||++||+.+...+.+.|.+ . +.|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ 155 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYT-DRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKG 155 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhh-chHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCc
Confidence 234433333 3345667776544 47899999999999999999999999999999999999999999887753 2 468
Q ss_pred EEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 503 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 503 vi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+||||+.++..+|+++++|++|+++ +.++.++.++
T Consensus 156 ii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 192 (213)
T PRK15177 156 LIVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQATA 192 (213)
T ss_pred EEEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHHHH
Confidence 999999999999999999999999997 5577666543
No 334
>KOG0055|consensus
Probab=100.00 E-value=8.1e-36 Score=339.48 Aligned_cols=201 Identities=32% Similarity=0.424 Sum_probs=165.1
Q ss_pred CeEEEEeeEEEeCCCc--eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~--~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+||..+ ++|+++||.|++|+.++|||||||||||++++|.+++.|++|+|..++ +.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 4689999999997543 699999999999999999999999999999999999999999998653 457
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~-------~~---~~~~~LSgGqkqRv~lA~al~ 469 (568)
||.++|+|. +| ..|+.|++... .+.+.+++.++++..+..... ++ ..--+||||||||+||||||+
T Consensus 429 iglV~QePv--lF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 429 IGLVSQEPV--LF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred cCeeeechh--hh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 999999983 55 56888887643 244555555554433221111 11 112369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+++...+.++|.+. +.|.|+|+|++..++. +|+|++|++|+|++ .|+.+++.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi 575 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELI 575 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999999999876 6799999999999987 89999999999986 46666654
No 335
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.7e-35 Score=329.71 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 358999999999642 5799999999999999999999999999999999999999999998764 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +| +.|+.+++.... ..+.+++...++..++...... .....||||||||++||||++
T Consensus 416 i~~~~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 416 MALVPQDPV--LF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred ceEEccCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 999999974 55 458889876422 3456677777777665432111 123579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|++|||||||++||+.+.+.+.+.|.++ +.|+|+|||+.+.+. .+|++++|++|+++. .|+++++.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~-~g~~~~l~ 562 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVA-QGTHAELI 562 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEe-eecHHHHH
Confidence 999999999999999999999999999876 579999999999886 589999999999975 46666653
No 336
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-35 Score=336.76 Aligned_cols=201 Identities=27% Similarity=0.430 Sum_probs=168.9
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.-++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..++ +..|
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 35899999999954 35799999999999999999999999999999999999999999998764 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.+++... ...+.+++.+.++..++...... .....||||||||++|||||++
T Consensus 534 ~~v~q~~~--lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 534 GVVLQENV--LFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred eEEccCCe--ehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999974 554 5889988643 23456677777666655432111 1346899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+.. ||++++|++|+++. .|+.+++.
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~-~g~~~~l~ 679 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE-SGRHEELL 679 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEE-eCCHHHHH
Confidence 99999999999999999999999999876 5799999999999975 89999999999974 57777664
No 337
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=267.90 Aligned_cols=211 Identities=23% Similarity=0.338 Sum_probs=172.9
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
.|+|++.++++.| +...-++||||.+++||+++|+|.+||||||||+||++-+.|+.|.|.+..
T Consensus 4 ~PLL~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred Ccceeehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 5799999999999 667789999999999999999999999999999999999999999997531
Q ss_pred -----CeeEEEEecCCCCCCCCCCC----HHHHHHH----hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDT----PCEYLMK----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~----~~e~l~~----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+...|++.|+|.+.+-..-+ +-|-++. .++.-.+.+..||+.+.++...-...+..+|||++||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 34589999999776554333 3343332 2333345667899999987654444679999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEE-------cC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKF-------NG 533 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~-------~g 533 (568)
||-|+..|.++++||||.|||..-+..|.++++ +++-++|+||||+..+.-.+++..+|.+|++++. +.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDD 242 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccC
Confidence 999999999999999999999999888888876 4577999999999999999999999999999763 33
Q ss_pred CHHHHHHHHHH
Q psy16366 534 DFDDYREKLLT 544 (568)
Q Consensus 534 ~~~~~~~~~~~ 544 (568)
+-+.|.+.+..
T Consensus 243 P~hPYTQLLVS 253 (258)
T COG4107 243 PHHPYTQLLVS 253 (258)
T ss_pred CCCchHHHHHH
Confidence 34456554443
No 338
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.1e-35 Score=323.56 Aligned_cols=185 Identities=36% Similarity=0.493 Sum_probs=158.2
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 58999999999654 4799999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++... ...+.+++.+.++..++.+..... ....||||||||++||||++++
T Consensus 400 ~v~Q~~~--lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 400 WVPQHPF--LFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEcCCCc--ccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 9999984 665 5999998643 234667788888887775432221 2457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++.+. .||++++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999999876 579999999999985 58999875
No 339
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.8e-35 Score=325.15 Aligned_cols=174 Identities=37% Similarity=0.557 Sum_probs=149.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGK 403 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~ 403 (568)
.-++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..|+|
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 3589999999996556799999999999999999999999999999999999999999998875 347999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|. .|+.+++... ...+.+++.++++..++.+..... .-..||||||||++||||++.+|
T Consensus 413 V~Q~~~--lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 413 FAQDAH--LFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred EccCcc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 999984 665 4899988653 335677888888888775432211 12469999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecch
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDE 510 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 510 (568)
+||||||||++||.++...+.+.|.+. +.|+|+|||++
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999876 57999999984
No 340
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-34 Score=326.52 Aligned_cols=200 Identities=28% Similarity=0.347 Sum_probs=167.9
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC--ccEEEECC-------CeeEEEEecC
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGELRKSP-------RLRIGKFDQH 407 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~--~G~i~~~~-------~~~i~~~~q~ 407 (568)
.++|+++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|.++|+ +|+|..++ ..+++|++|+
T Consensus 70 ~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 366788899 5688999999999999999999999999999999999999985 89998754 2469999998
Q ss_pred CCCCCCCCCCHHHHHHHh--c----CCCH----HHHHHHHHhCCCCCccc----cCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 408 SGEHLFPDDTPCEYLMKL--F----NLPY----EKSRRQLGMFGLPSYAH----TIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~--~----~~~~----~~~~~~L~~~~l~~~~~----~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+ .+++..|+.|++... . .... +.+.++++.+||.+..+ ...+..|||||||||+||++|+.+|+
T Consensus 149 ~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 149 D--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred c--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 6 477888999987431 1 1222 23567899999976543 23467899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||||||+|||..+...+.+.|+++ +.|||++||+++ .+.+++|++++|.+|+++ +.|+.++..+
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~~ 296 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMA 296 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHHH
Confidence 99999999999999999999999864 679999999998 588899999999999986 5677776654
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.3e-35 Score=293.06 Aligned_cols=182 Identities=27% Similarity=0.342 Sum_probs=146.7
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-----------ECC----------
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSP---------- 397 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 397 (568)
.+|+++|++.+.+++|+|+ |.+|++++|+|||||||||||++|+|+++|++|+|. ...
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999533469999995 999999999999999999999999999999999995 211
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
...++|++|+.. +++. ++.+.+..... .....+.++++.+|+..... .++..||||||||++|||+|+.+|
T Consensus 83 ~~~~~~i~~~~~~~~--~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVD--LIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhc--cCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHhCC
Confidence 113677777653 3332 44443332211 11345678899999987654 477999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+++||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|.+
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 999999999999999999888888764 57999999999999999999999954
No 342
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.3e-35 Score=323.39 Aligned_cols=191 Identities=23% Similarity=0.252 Sum_probs=157.6
Q ss_pred CeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------C
Q psy16366 334 PVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~ 398 (568)
.-++++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 358999999999542 3699999999999999999999999999999999999999999998653 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCC-----CCCCCHhHHHHHHHHHHHccCCC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP-----IRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..++|++|++. +|.. |..++. ......+++.++++.+++.......| ...||||||||++||||++.+|+
T Consensus 416 ~~i~~v~q~~~--lf~~-ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 416 DLFSAIFADFH--LFDD-LIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred hhCcEEccChh--hhhh-hhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46899999873 5544 444442 11234566778899998876543222 35799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHH-H---hcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAI-K---NYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l-~---~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+++.+.+.+.+ . ..+.|+|+|||+++.+. .||+|++|++|++++
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVK 550 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 99999999999999999987754 2 34689999999999775 799999999999874
No 343
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-35 Score=282.32 Aligned_cols=190 Identities=28% Similarity=0.453 Sum_probs=153.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEEecCCCCCCCCCCCHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPC 419 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~~q~~~~~l~~~~~~~ 419 (568)
++.+||||+|++|++++++|||||||||+||+|+|++.|++|.|+.++. .++++++-+. .++.-+..+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk-~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK-LQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhh-heeeeechhh
Confidence 4789999999999999999999999999999999999999999987531 1244433221 1222222222
Q ss_pred HH---HHHhcCCCHHHH----HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q psy16366 420 EY---LMKLFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492 (568)
Q Consensus 420 e~---l~~~~~~~~~~~----~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l 492 (568)
+- +...+.++..+. ..+.+.+++++.... |++.||-|||.|+.||.+|+++|+||+|||||-|||...+..+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~-~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhh-hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 22 223345555443 345567788877754 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 493 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 493 ~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
.+.|+++ +.||+++||++.-+..+|++|++|+.|+++ |+|++..+.+.+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f 248 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHh
Confidence 9999876 579999999999999999999999999997 899988876654
No 344
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=321.78 Aligned_cols=194 Identities=27% Similarity=0.394 Sum_probs=166.7
Q ss_pred CeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 334 PVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
++|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 47999999999953 24799999999999999999999999999999999999999999997642
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..++|++|++ .+++..++.+++... .+.. .+.+.++++.+|+....+ .++..|||||+||++|||+|
T Consensus 83 ~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 83 LRREHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-YQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHhccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-CCcccCCHHHHHHHHHHHHH
Confidence 23689999987 478888888876421 1222 234567899999987655 47899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
+.+|++|||||||++||+.+++.+.++|+++ +.|+|+|||+.+++. .||++++|++|+++..
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRN 224 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEee
Confidence 9999999999999999999999999998765 579999999999886 6999999999999753
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.2e-34 Score=271.51 Aligned_cols=148 Identities=27% Similarity=0.328 Sum_probs=124.6
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe------eEEEEecCCCCCCCCCCCHHHHH
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------RIGKFDQHSGEHLFPDDTPCEYL 422 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~i~~~~q~~~~~l~~~~~~~e~l 422 (568)
.++|+|+||+|.+|++++|+|||||||||||++|. +++|++.+.... .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57899999999999999999999999999999985 368888754321 2333322
Q ss_pred HHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy16366 423 MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNY- 499 (568)
Q Consensus 423 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~--p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 499 (568)
.++|..++|.......++.+||||||||++|||+|+.+ |++|||||||++||+.+.+.+.+.|.++
T Consensus 68 -----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~ 136 (176)
T cd03238 68 -----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred -----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 35788899875423347899999999999999999999 9999999999999999999999988764
Q ss_pred --CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 500 --QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 500 --~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+.|||+||||++++. .||++++|.+|..
T Consensus 137 ~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 137 DLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred hCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 689999999999984 7999999987654
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-34 Score=266.65 Aligned_cols=142 Identities=43% Similarity=0.667 Sum_probs=126.9
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEec
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFDQ 406 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~q 406 (568)
++++++.| .++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 2 ~~~~~~~~-~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRY-GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEe-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 67999999 4568999999999999999999999999999999999999999999976542 11222222
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~ 486 (568)
||+||+||++||++++.+|+++||||||++||+
T Consensus 81 -----------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~ 113 (157)
T cd00267 81 -----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113 (157)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 487 ESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 487 ~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
.+...+.+.|.++ +.|+|++||+++++..+|+++++|.+|+
T Consensus 114 ~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 114 ASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999765 3599999999999999999999999874
No 347
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.3e-34 Score=298.03 Aligned_cols=169 Identities=30% Similarity=0.400 Sum_probs=144.4
Q ss_pred EECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----
Q psy16366 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY---- 430 (568)
Q Consensus 367 ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~---- 430 (568)
|+|||||||||||++|+|+++|++|+|.++. +..++|++|++. +|+.+|+.+++... .+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 6899999999999999999999999998653 236999999874 78889999987532 22222
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEE
Q psy16366 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 506 (568)
Q Consensus 431 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~v 506 (568)
+.+.++++.++|....+. ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+|
T Consensus 79 ~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADR-KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHcCCcchhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 346678999999876654 78999999999999999999999999999999999999999999888654 6799999
Q ss_pred ecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 507 SHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 507 sHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++++..+||++++|++|++.. .|+.+++.
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~-~g~~~~~~ 189 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQ-IGTPEEIY 189 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999999974 56776654
No 348
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-35 Score=282.40 Aligned_cols=181 Identities=25% Similarity=0.411 Sum_probs=156.9
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEEecCCCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~~q~~~~~l~~~~~ 417 (568)
=++||++..-.++||.|++|||||||+|+|+|+.+|++|.|..+. +.+|||+||+. .+|+.+|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA--RLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA--RLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc--ccccceE
Confidence 368888888789999999999999999999999999999997542 46899999997 5999999
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 418 PCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 418 ~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
+..++.... ........++...+|+.+.+.+ .|.+|||||||||+|+|||+..|++||||||.+.||..-..+++-+|
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R-~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDR-YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhh-CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence 988875432 2235577888999999988776 67899999999999999999999999999999999999888888877
Q ss_pred Hh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 497 KN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 497 ~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
.+ ++..|++|||.++.+.+.++++++|++|++..+ |..++
T Consensus 172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~-g~~e~ 215 (352)
T COG4148 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS-GPLEE 215 (352)
T ss_pred HHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec-CcHHH
Confidence 65 467899999999999999999999999999754 54443
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=289.28 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=176.7
Q ss_pred CCCeEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------
Q psy16366 332 PPPVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------ 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------ 397 (568)
..|+|.++|+++.|. +...++++|||+|++||.+||||.+|||||-..+.|+|+++. -+|.|.+++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 357899999999993 245799999999999999999999999999999999999864 257777643
Q ss_pred ---------CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCH----HHHHHHHHhCCCCCc--cccCCCCCCCHhH
Q psy16366 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPY----EKSRRQLGMFGLPSY--AHTIPIRDLSGGQ 458 (568)
Q Consensus 398 ---------~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~----~~~~~~L~~~~l~~~--~~~~~~~~LSgGq 458 (568)
..+|+++||+|...+.|-.|+...+.. ..+... +++.++|+.+|+... ....+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 247999999998888887776554432 224433 445678999999752 2234689999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEE---
Q psy16366 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKF--- 531 (568)
Q Consensus 459 kqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~--- 531 (568)
||||+||.||+.+|++||.||||.+||..-+..+.++|++ ++.++++||||+..+.+++|+++||.+|++++-
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 9999999999999999999999999999999999988875 478999999999999999999999999999863
Q ss_pred ----cCCHHHHHHHHHHHH
Q psy16366 532 ----NGDFDDYREKLLTSL 546 (568)
Q Consensus 532 ----~g~~~~~~~~~~~~~ 546 (568)
..+-..|.+.++++-
T Consensus 243 ~~lF~~PqHpYTr~Ll~ae 261 (534)
T COG4172 243 ETLFAAPQHPYTRKLLAAE 261 (534)
T ss_pred HHHhhCCCChHHHHHHhcC
Confidence 234456777776654
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-33 Score=340.42 Aligned_cols=188 Identities=27% Similarity=0.401 Sum_probs=157.6
Q ss_pred eEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC-C-----------Cee
Q psy16366 335 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-P-----------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~-----------~~~ 400 (568)
-|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..+ . +..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 58999999999642 369999999999999999999999999999999999999999999873 1 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc------------------------------------------------------
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF------------------------------------------------------ 426 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~------------------------------------------------------ 426 (568)
|||++|++. +|. .|+.+++....
T Consensus 462 Ig~V~Q~~~--LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPL--LFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEeccccc--chh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 999999974 675 48888875311
Q ss_pred ----CCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q psy16366 427 ----NLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492 (568)
Q Consensus 427 ----~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l 492 (568)
..+.+++.++++.+++..... ......|||||||||+|||||+.+|+||||||||++||+.+...+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 112345666777776654321 124678999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 493 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 493 ~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.++|.++ +.|+|+|||+++.+ ..||+|++|++|
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 9999876 47999999999998 579999999986
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.9e-33 Score=266.20 Aligned_cols=194 Identities=26% Similarity=0.365 Sum_probs=158.7
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHH---H
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---K 424 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~---~ 424 (568)
...+|+||||+|++||++||||+||||||||||+|+|.++|++|+|..+.+. +++.- ....+.+++|..|++. .
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v--~~li~-lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV--APLIE-LGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE--ehhhh-cccCCCcccchHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999887543 32221 1234678889888763 2
Q ss_pred hcCCCHHHH----HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy16366 425 LFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 499 (568)
Q Consensus 425 ~~~~~~~~~----~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 499 (568)
..++..+++ .++.+.-.|..+.+ .|+.++|-||+.|+++|.|...+|++||+||-.+--|+.-++.-.+.+.++
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~-~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFID-QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhh-CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 346665544 44556666766666 499999999999999999999999999999999999998877776666655
Q ss_pred --CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHH
Q psy16366 500 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 546 (568)
Q Consensus 500 --~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~ 546 (568)
+.|||+||||+..+.++||++++|++|+++ +.|++++..+......
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAYEEDL 242 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHHHHhh
Confidence 579999999999999999999999999997 5688887665554444
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.4e-33 Score=313.69 Aligned_cols=182 Identities=27% Similarity=0.339 Sum_probs=150.2
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-----------ECC-----------
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSP----------- 397 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~----------- 397 (568)
+++++|+++..+|++++ .+++|+++||+||||||||||||+|+|+++|+.|+|. +.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 48999943357999999 8999999999999999999999999999999999985 321
Q ss_pred --CeeEEEEecCCCC--CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 398 --RLRIGKFDQHSGE--HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 398 --~~~i~~~~q~~~~--~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..++++.+|.... .++. .++.+++... .....+.++++.++|....+ +++.+|||||||||+||++|+.+|+
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV--DERGKLDEVVERLGLENILD-RDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred ccCcceeecccchhhhhhhhc-chHHHHHHhh--hHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1335665654321 1222 3677766421 12345778999999986554 5889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|.++
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999877 789999999999999999999999864
No 353
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6e-33 Score=288.73 Aligned_cols=204 Identities=32% Similarity=0.464 Sum_probs=164.3
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..|.++++++.=|+. +++++++||++.+|+.++||||+|||||||.|+|.|..+|++|.|+.+. ...|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 479999999977654 4899999999999999999999999999999999999999999998653 3579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCC-------CCCccccC---CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG-------LPSYAHTI---PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~-------l~~~~~~~---~~~~LSgGqkqRv~lA~al~~ 470 (568)
||+||+- ++|+. |+.|++.++. ..+.+.+-+....-| |+.-.++. --..||||||||++|||||..
T Consensus 413 GYLPQdV--eLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 413 GYLPQDV--ELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred CcCcccc--eecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999986 47766 7889888765 344444333222222 22111110 125799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
+|.+++||||-++||.+...+|.++|.. .++|+|+|||....+. .+|+|.+|++|++..| |+.++...++
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F-G~r~eVLa~~ 562 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF-GPREEVLAKV 562 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc-CCHHHHHHHh
Confidence 9999999999999999999999999865 4789999999999986 5799999999999765 6665554443
No 354
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=259.38 Aligned_cols=176 Identities=29% Similarity=0.412 Sum_probs=149.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~ 404 (568)
++..+|++..- +..++|.++||++.+||.+-|.||||||||||||+|+|+++|++|+|+++.. ..+-|+
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 46678888887 7889999999999999999999999999999999999999999999998631 112233
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc---C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~---~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
-.++ .+-.++|+.|++..+. + .+...+.+.+..+||.+..+. |+++||-|||+||+|||..++.++++|||||
T Consensus 81 GH~~--giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl-p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 81 GHQP--GIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred hccc--cccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccccc-chhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 2222 4678899999886542 3 346778899999999998875 9999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIR 514 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~ 514 (568)
|++||.+....|...+... ++.||++||..-.+.
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9999999999999998754 678999999987664
No 355
>KOG0062|consensus
Probab=100.00 E-value=5.4e-34 Score=296.64 Aligned_cols=200 Identities=29% Similarity=0.487 Sum_probs=162.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--eeEEEEecCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--LRIGKFDQHSGEHL 412 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~l 412 (568)
-|.+.+++..| |++.+|++-++++..|.++||+|+||+|||||||+|+. |.|..-+. ...|..-.+....+
T Consensus 80 Di~~~~fdLa~-G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l 152 (582)
T KOG0062|consen 80 DIHIDNFDLAY-GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVL 152 (582)
T ss_pred ceeeeeeeeee-cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhh
Confidence 47788999999 78999999999999999999999999999999999987 33322111 01121111111223
Q ss_pred CCCCCHHHHHHHh----cCCCHHHHHH-HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 413 FPDDTPCEYLMKL----FNLPYEKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 413 ~~~~~~~e~l~~~----~~~~~~~~~~-~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
..++...+++..- .....+++.. +|.-+||+.....+|+.+||||-|.|++|||||..+|||||||||||+||..
T Consensus 153 ~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred hccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 4444455555432 1223344444 8999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 488 ~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
++.+|.+.|..++.|+|+||||..|+..+|..|+.+++-++..|.|+|+.+.+.
T Consensus 233 av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 233 AVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987543
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5e-33 Score=254.57 Aligned_cols=201 Identities=24% Similarity=0.286 Sum_probs=169.3
Q ss_pred CeEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------
Q psy16366 334 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------- 397 (568)
++|+++|+++.|.. ...+++.|||+++.|+.+||+|.||||||||.|+|+|.++|++|+|..+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 56889999988732 12478999999999999999999999999999999999999999998764
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
..+|-++||+|+..+.|.+.+-..+-. ...++ .+++.+.|..+||-++-....+..||-||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 346899999999888887766554422 12232 2446677999999765556688999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||+.+|+|+|.||..++||...+..+.++..+ .+.+.|+|+.++-.+..++|.|+||+.|+++++..+
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999998888877643 477999999999999999999999999999987543
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.1e-32 Score=330.54 Aligned_cols=197 Identities=23% Similarity=0.309 Sum_probs=162.3
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
.++++|++|.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. .|+|++|++. ++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l~ 711 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAW--IQ 711 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCcc--cc
Confidence 69999999999533 5799999999999999999999999999999999999999999998875 6999999974 54
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 414 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 414 ~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~-----------~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
..|+.+++......+.+...+.++..++.. ... ....+|||||||||+||||++.+|+++||||||+
T Consensus 712 -~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 712 -NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred -CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 468999886432334444444443333221 112 2457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh-----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAIKN-----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~-----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||+.+...+.+.+.+ .+.|+|+|||+.+++.. ||+|++|++|++.. .|+++++.
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~-~g~~~~l~ 849 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISE-MGSYQELL 849 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEe-eCCHHHHH
Confidence 9999999999988853 24799999999999976 89999999999974 57777764
No 358
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-32 Score=259.20 Aligned_cols=194 Identities=27% Similarity=0.323 Sum_probs=160.3
Q ss_pred EEEEeeEEEeC----CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 336 LGLHDVTFGYP----GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 336 l~~~~v~~~y~----~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
+.+.|+++.|. ..+++|+++|++|..|+++.|+|.||||||||+++|+|.+.|++|+|.... ...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 34556665552 235799999999999999999999999999999999999999999998653 234
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc------CCCH-------HHHHHHHHhC--CCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY-------EKSRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~------~~~~-------~~~~~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
++.+||+|....++.+|+.|++.-.. ++.. +..+..+..+ ||+..+.. ++.-|||||||-|+|+
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~-~iglLSGGQRQalsL~ 160 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD-RIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcC-hhhhccchHHHHHHHH
Confidence 77899999988999999999875321 2221 2234455554 45666654 7999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHH----HHhcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEA----IKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.|.+..|+||+|||-|++|||.+...+++. +.+.+.|.+||||+++-+-.|.+|.++|++|+|+.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999999998777664 45668899999999999999999999999999974
No 359
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5e-32 Score=329.34 Aligned_cols=200 Identities=24% Similarity=0.355 Sum_probs=165.1
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
..++++|++|+|++ ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|.+.. .+..|+|++|+|.
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~-- 689 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSW-- 689 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCccc--
Confidence 36899999999964 357999999999999999999999999999999999999999987643 3557999999984
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+|. .|+.|++......+.+++.++++..++..+.... .-..||||||||++||||+.++|+||||||||
T Consensus 690 Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 690 IFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred ccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 554 5999998754445667777777777764332211 12469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHh--cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 482 NNLDIESIDALAEA-IKN--YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 482 ~~LD~~~~~~l~~~-l~~--~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++||..+...+.+. +.. .+.|+|+|||++..+. .||+|++|++|++++ .|+++++.
T Consensus 769 SaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~-~Gt~~eL~ 827 (1495)
T PLN03232 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKE-EGTFAELS 827 (1495)
T ss_pred cccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEE-ecCHHHHH
Confidence 99999998877654 544 2579999999999876 589999999999974 68887764
No 360
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6e-32 Score=303.81 Aligned_cols=190 Identities=25% Similarity=0.293 Sum_probs=160.4
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECCC--------eeEEEEecCCCCCCCCC
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSPR--------LRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~i~~~~q~~~~~l~~~ 415 (568)
+.+++|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|..++. ..+||++|++ .+++.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~--~~~~~ 113 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD--LFIPT 113 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccc--ccCcc
Confidence 3567999999999999999999999999999999999999885 799987653 3689999986 47888
Q ss_pred CCHHHHHHHh--cC----CCH----HHHHHHHHhCCCCCccccCCCC------CCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 416 DTPCEYLMKL--FN----LPY----EKSRRQLGMFGLPSYAHTIPIR------DLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 416 ~~~~e~l~~~--~~----~~~----~~~~~~L~~~~l~~~~~~~~~~------~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.|+.|++... .. ... ..+.++++.+||.+..++ +++ .|||||||||+||++|+.+|+||+|||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t-~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT-RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcC-ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999987532 11 121 246778999999876654 454 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+|||..+...+.+.|++. +.|||+++|+++ .+.+.+|++++|.+|+++ +.|+.++..+
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~~~ 256 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVP 256 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHHHH
Confidence 99999999999999998765 579999999985 788899999999999997 5677776543
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.98 E-value=9.3e-32 Score=327.43 Aligned_cols=200 Identities=23% Similarity=0.370 Sum_probs=166.0
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-cEEEECCCeeEEEEecCCCC
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-GELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~~~~i~~~~q~~~~ 410 (568)
+.++++|++|+|+. ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++ |+|.. +..|+|++|+|.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--~~~Iayv~Q~p~- 689 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--RGTVAYVPQVSW- 689 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--cCeEEEEcCccc-
Confidence 46899999999953 3579999999999999999999999999999999999999999 89975 457999999984
Q ss_pred CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 411 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+|. .|+.+++......+.+++.++++..+|..+.... .-..|||||||||+||||+.++|+|||||||
T Consensus 690 -Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 690 -IFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred -cCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 554 5999998754445667777777777765432211 2347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHH-HHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 481 TNNLDIESIDALA-EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 481 t~~LD~~~~~~l~-~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++||+.+...+. +.+... +.|+|+|||++..+. .+|+|++|++|++.+ .|+++++.+
T Consensus 768 tSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e-~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKE-EGTYEELSN 828 (1622)
T ss_pred ccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEE-eCCHHHHHh
Confidence 9999999887765 455543 579999999999886 489999999999974 688887653
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.4e-31 Score=251.23 Aligned_cols=202 Identities=29% Similarity=0.404 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC------------C
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP------------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~------------~ 398 (568)
.+|+++|++... .+ +.+|++|||+|++||+.+|+||||||||||.++|+|.- .+++|+|..+. +
T Consensus 2 ~~L~I~dLhv~v-~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEV-EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEe-cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 378999999999 55 59999999999999999999999999999999999974 78999998653 3
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCC----------CHHHHHHHHHhCCCCCccccCCC-CCCCHhHHHHHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNL----------PYEKSRRQLGMFGLPSYAHTIPI-RDLSGGQKARVALAEL 467 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~-~~LSgGqkqRv~lA~a 467 (568)
..|...+|.|. -++..+..+++....+. ....+++.++.++++.....+.+ ..+|||||+|.-|+.+
T Consensus 81 ~GifLafQ~P~--ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 81 AGIFLAFQYPV--EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred cCCEEeecCCc--cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 34667789885 45777888888643321 13456778999999874333343 5799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhC-ceEEEEECCeEEEEcCCHHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETD-CELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~-~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++.+|++.|||||-||||+.+.+.+.+.++.+ +.++++|||..+++..+. |++.+|-+|+|+. .|++ ++.+
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~~-el~~ 233 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGDP-ELAE 233 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCCH-HHHH
Confidence 99999999999999999999999998888766 578999999999998775 8999999999974 6776 4433
No 363
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.7e-32 Score=241.50 Aligned_cols=184 Identities=32% Similarity=0.447 Sum_probs=153.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECC---------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP---------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~---------~~~i~ 402 (568)
++.++||+.+. ++..+|-|+||+|.+||++.|+||+||||||||..+.|.+.+. +|++..+. ++.+|
T Consensus 2 ~l~l~nvsl~l-~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRL-PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecC-CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 57899999998 5789999999999999999999999999999999999999875 68887543 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-----C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-----N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-----~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++||++ .+|+..++.+++.... + .....+...|++.||++..+. .+.+||||||.||+|-|+|+..|+.|+
T Consensus 81 iLFQD~--lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 81 ILFQDA--LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-DPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred eeeccc--ccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-ChhhcCcchHHHHHHHHHHHhCcceee
Confidence 999997 4899999988764321 1 112345678999999998876 568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHH----HHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 477 LDEPTNNLDIESIDALAEA----IKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~----l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
||||+|.||..-++.+.+. ++..+..+|+||||...+. ...+++.|
T Consensus 158 LDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred eCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999776655554 4566778999999999887 56666554
No 364
>KOG0927|consensus
Probab=99.98 E-value=4.6e-32 Score=283.66 Aligned_cols=199 Identities=29% Similarity=0.484 Sum_probs=159.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
-+.++|+++.| .+..+++|+.|++.+|++|||+|+|||||||+|++|.|-..|..-.+.. ..+.++. ...
T Consensus 75 dvk~~sls~s~-~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~---~ps 144 (614)
T KOG0927|consen 75 DVKIESLSLSF-HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREI---EPS 144 (614)
T ss_pred cceeeeeeecc-CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccC---CCc
Confidence 48899999999 6789999999999999999999999999999999999999996544321 1111111 011
Q ss_pred CCCHHH--------------HHHH--------------------hc--CC--CHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 415 DDTPCE--------------YLMK--------------------LF--NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 415 ~~~~~e--------------~l~~--------------------~~--~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
..+..+ ++.. .. +. ...++..+|..+|+......+....|||
T Consensus 145 ~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 145 EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 111111 1100 00 00 0123345677888887777778899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc-eEEEEecchHHHHhhCceEEEEECCeEEEEcCCH
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GVILVSHDERLIRETDCELWALEKKNIRKFNGDF 535 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~ 535 (568)
|++.|++|||+|..+|++|||||||||||++++.+|.+.|.++.. ++|++||+.+|+..+|+.|+.+++++.+.|.|+|
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gny 304 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNY 304 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCH
Confidence 999999999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy16366 536 DDYREKLL 543 (568)
Q Consensus 536 ~~~~~~~~ 543 (568)
+.|.....
T Consensus 305 dqy~~tr~ 312 (614)
T KOG0927|consen 305 DQYVKTRS 312 (614)
T ss_pred HHHhhHHH
Confidence 99965443
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.98 E-value=2.2e-31 Score=323.40 Aligned_cols=184 Identities=25% Similarity=0.380 Sum_probs=148.5
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCC
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~ 428 (568)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|..++ .|+|++|++. +++ .|+.+++......
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~~-~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSW--IMP-GTIKDNIIFGLSY 513 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCc--cCC-ccHHHHHHhcccc
Confidence 4689999999999999999999999999999999999999999998765 6999999974 565 4999987632222
Q ss_pred CHHHHHHHHHhCCCCCcc----------ccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-HH
Q psy16366 429 PYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IK 497 (568)
Q Consensus 429 ~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~ 497 (568)
......+++..++|.... -..+..+|||||||||+||||++.+|++|||||||++||+.+...+.+. +.
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 322333333333322111 1124578999999999999999999999999999999999999999874 44
Q ss_pred hc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 498 NY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 498 ~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+ +.|||+|||+++++.. ||++++|++|++. ..|+++++.
T Consensus 594 ~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~-~~g~~~~l~ 635 (1490)
T TIGR01271 594 KLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY-FYGTFSELQ 635 (1490)
T ss_pred HHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE-EEcCHHHHH
Confidence 43 5799999999999875 9999999999986 467777664
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.1e-31 Score=260.50 Aligned_cols=180 Identities=24% Similarity=0.284 Sum_probs=128.8
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHH-HHHhc--------------------CcCCCccEEEECCCeeEEEEe
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL-NLLKG--------------------ELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLl-k~l~G--------------------~~~p~~G~i~~~~~~~i~~~~ 405 (568)
.+..+|++|||+|++||++||+||||||||||+ .+|.. ...|..+.+ .....++..
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 82 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSI---EGLSPAIAI 82 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccc---cCCCceEEe
Confidence 345799999999999999999999999999996 33321 111111111 011234444
Q ss_pred cCCCCCCCCCCCHHH------HHHHhcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEE
Q psy16366 406 QHSGEHLFPDDTPCE------YLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILI 476 (568)
Q Consensus 406 q~~~~~l~~~~~~~e------~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLl 476 (568)
|++...+.+..++.. ++...+. .......+.|..+++.......++.+|||||+|||+||++|+.+| ++||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll 162 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV 162 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 544333334334221 1111111 112233568999999764334578999999999999999999998 5999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE------ECCeEEE
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRK 530 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l------~~g~i~~ 530 (568)
|||||++||+.+...+.+.|.++ +.|||+||||++++. +||++++| ++|+|+.
T Consensus 163 lDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 163 LDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEe
Confidence 99999999999999998888654 579999999999984 89999999 8888874
No 367
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=1.5e-29 Score=290.77 Aligned_cols=105 Identities=29% Similarity=0.371 Sum_probs=90.3
Q ss_pred HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEE
Q psy16366 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 506 (568)
Q Consensus 433 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~v 506 (568)
..+.|..+||......+++.+|||||+||++||++|+.+| +++||||||+|||+..+..|.+.|+++ +.|||+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3467888999754334578999999999999999999999 999999999999999999999988765 5799999
Q ss_pred ecchHHHHhhCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 507 SHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 507 sHd~~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
|||++++. .||+++.| ++|+++ +.|+.+++.
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~ 926 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVA 926 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHH
Confidence 99999995 69999999 688886 567777654
No 368
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=1.2e-29 Score=302.72 Aligned_cols=104 Identities=24% Similarity=0.369 Sum_probs=89.2
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEec
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 508 (568)
++|..+||......+++.+|||||+|||+||++|+ .+|++|||||||+|||+.++..|.++|.++ +.|||+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 47888999765234578999999999999999997 699999999999999999999999988765 579999999
Q ss_pred chHHHHhhCceEEEEE------CCeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWALE------KKNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~------~g~i~~~~g~~~~~~~ 540 (568)
|++++ .+||++++|. +|+++ ..|+++++..
T Consensus 871 dl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 871 NMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred CHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 99999 7999999996 56675 5688877653
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=3.8e-30 Score=312.86 Aligned_cols=185 Identities=25% Similarity=0.331 Sum_probs=148.9
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 427 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~ 427 (568)
++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|... .+|+|++|++. ++ ..|+.+++.....
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l~-~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAW--IM-NATVRGNILFFDE 746 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCc--cC-CCcHHHHHHcCCh
Confidence 4579999999999999999999999999999999999999999999864 57999999974 55 4689998764222
Q ss_pred CCHHHHHHH---------HHhC--CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-
Q psy16366 428 LPYEKSRRQ---------LGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA- 495 (568)
Q Consensus 428 ~~~~~~~~~---------L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~- 495 (568)
...+...+. +..+ |+..... .+..+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 222222222 3333 4443333 35789999999999999999999999999999999999988777653
Q ss_pred HH-hc-CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 496 IK-NY-QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 496 l~-~~-~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+. .. +.|+|+||||++++. .||++++|++|++. ..|+++++.+
T Consensus 826 ~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~~ 870 (1560)
T PTZ00243 826 FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE-FSGSSADFMR 870 (1560)
T ss_pred HHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHHh
Confidence 22 22 579999999999995 69999999999996 5688888653
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.2e-31 Score=238.30 Aligned_cols=189 Identities=26% Similarity=0.412 Sum_probs=157.6
Q ss_pred eEEEEeeEEEeC----CC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 335 VLGLHDVTFGYP----GG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~----~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
.|.++|++++|. ++ -++|+|+||+|+.||++++-||+|+|||||||+|.|-+.|++|+|...+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 477889988883 22 2689999999999999999999999999999999999999999997531
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv 462 (568)
+..|||++|... ..+.-+..+..+. ..+.+. ..++.+|.+++++..++..++.++||||||||
T Consensus 84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 346899988542 3444444443332 224443 45677899999999888889999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
-|||.++.+-+||||||||+.||..++..+.++|.+. +.++|=|=||.+.=..+|||++-|..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999765 56799999999999999999987753
No 371
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=4.6e-30 Score=309.57 Aligned_cols=190 Identities=20% Similarity=0.188 Sum_probs=157.5
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc----CCCccEEEECC----------CeeEEEEecCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL----TPNKGELRKSP----------RLRIGKFDQHSGEHLF 413 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~----~p~~G~i~~~~----------~~~i~~~~q~~~~~l~ 413 (568)
.+++|+|||+.|++|++++|+||||||||||||+|+|.. +|++|+|.+++ +..++|++|+. .++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d--~~~ 150 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETD--VHF 150 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccc--ccC
Confidence 357999999999999999999999999999999999986 57899998753 23489999985 477
Q ss_pred CCCCHHHHHHHh---c-------CCCHH----H-HHHHHHhCCCCCccccC----CCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 414 PDDTPCEYLMKL---F-------NLPYE----K-SRRQLGMFGLPSYAHTI----PIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 414 ~~~~~~e~l~~~---~-------~~~~~----~-~~~~L~~~~l~~~~~~~----~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+.+|+.|++... . +.+.+ . ...+|+.+||.+..++. .++.|||||||||+||++|+.+|+|
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 889999977431 1 12222 1 24578999998765432 3578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecch-HHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+|||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.+++|++++|.+|+++ +.|+.++..+
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~~~ 300 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQ 300 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHHHH
Confidence 9999999999999999999998764 56899999996 7888999999999999987 5677766544
No 372
>KOG0056|consensus
Probab=99.97 E-value=1.1e-30 Score=269.16 Aligned_cols=200 Identities=30% Similarity=0.399 Sum_probs=159.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.-++++||+|.|..++++|+||||++.+|+.+|||||+|+||||++|+|......++|.|..++ |..||
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 3588999999998889999999999999999999999999999999999999999999998764 45799
Q ss_pred EEecCCCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHH-------hCCCCCcccc---CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLG-------MFGLPSYAHT---IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~~~~~L~-------~~~l~~~~~~---~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
.+||+.. +|.+ |+..++.. ..+...+++.++.. .+++++-... .+--.|||||||||||||+++..
T Consensus 616 VVPQDtv--LFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 616 VVPQDTV--LFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred cccCcce--eecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 9999974 6665 44444321 11223333322222 2334322111 12347999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|.+++|||.||+||..+.+++..+|.+. +.|-|+|.|.+..+-. +|.|+++.+|.|++- |.-+++
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvEr-G~HeeL 759 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVER-GRHEEL 759 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeec-CcHHHH
Confidence 9999999999999999999999999886 5799999999999964 799999999999863 554443
No 373
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=9.1e-29 Score=283.84 Aligned_cols=102 Identities=27% Similarity=0.395 Sum_probs=87.2
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc---CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEe
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 507 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vs 507 (568)
.+.|..+||......+++.+|||||+|||+||++|+. +|+++||||||+|||+..+..|.+.|.++ +.|||+||
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567888997533345789999999999999999997 59999999999999999999999998765 57999999
Q ss_pred cchHHHHhhCceEEEE------ECCeEEEEcCCHHH
Q psy16366 508 HDERLIRETDCELWAL------EKKNIRKFNGDFDD 537 (568)
Q Consensus 508 Hd~~~i~~~~~~i~~l------~~g~i~~~~g~~~~ 537 (568)
||++++. .||++++| .+|+++ +.|+.++
T Consensus 889 H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~ 922 (924)
T TIGR00630 889 HNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEE 922 (924)
T ss_pred CCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHH
Confidence 9999995 69999999 688887 5577654
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=4e-30 Score=309.27 Aligned_cols=190 Identities=24% Similarity=0.273 Sum_probs=158.3
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECC--------CeeEEEEecCCCCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP--------RLRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~--------~~~i~~~~q~~~~~l~~~~ 416 (568)
.+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.+++ +..++|++|+. .+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d--~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND--VHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccc--cCCCcC
Confidence 467999999999999999999999999999999999999998 99998753 35699999985 477889
Q ss_pred CHHHHHHHh---cC----------CCH-H---------------------------HHHHHHHhCCCCCccc----cCCC
Q psy16366 417 TPCEYLMKL---FN----------LPY-E---------------------------KSRRQLGMFGLPSYAH----TIPI 451 (568)
Q Consensus 417 ~~~e~l~~~---~~----------~~~-~---------------------------~~~~~L~~~~l~~~~~----~~~~ 451 (568)
|+.|++... .+ ... + .+..+|+.+||.+..+ ...+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 999977421 11 000 0 1245788999976442 2356
Q ss_pred CCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecch-HHHHhhCceEEEEECC
Q psy16366 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKK 526 (568)
Q Consensus 452 ~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~i~~~~~~i~~l~~g 526 (568)
+.|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||+++|+. ..+..++|++++|.+|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 899999999999999999999999999999999999999999998765 56999999996 6888999999999999
Q ss_pred eEEEEcCCHHHHHH
Q psy16366 527 NIRKFNGDFDDYRE 540 (568)
Q Consensus 527 ~i~~~~g~~~~~~~ 540 (568)
+++ +.|+.++..+
T Consensus 415 ~iv-y~G~~~~~~~ 427 (1470)
T PLN03140 415 QIV-YQGPRDHILE 427 (1470)
T ss_pred eEE-EeCCHHHHHH
Confidence 997 5677766543
No 375
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=4.4e-29 Score=241.38 Aligned_cols=154 Identities=22% Similarity=0.316 Sum_probs=123.3
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc---------EEEEC--------CCeeEEEEecCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG---------ELRKS--------PRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G---------~i~~~--------~~~~i~~~~q~~~~~l~~~ 415 (568)
++++|++.+| +++|+||||||||||+++|+|++.|..| ++... ...++++++|++..+ +..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-YSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-eeE
Confidence 6789999999 9999999999999999999999877643 23221 135799999998643 110
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDA 491 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~ 491 (568)
...+.+.++++. .+.. ..++.+||||||||++||++++ .+|++|||||||++||+.+...
T Consensus 92 ------------~~~~~~~~~l~~---~~~~-~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~ 155 (197)
T cd03278 92 ------------ISQGDVSEIIEA---PGKK-VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVER 155 (197)
T ss_pred ------------EehhhHHHHHhC---CCcc-ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHH
Confidence 013345566666 3333 3478999999999999999986 4679999999999999999999
Q ss_pred HHHHHHhc--CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 492 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 492 l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+.+.|.++ +.|||+||||++++ .+||+++.|..
T Consensus 156 l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 156 FARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 99999876 46899999999987 47999998864
No 376
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-29 Score=256.43 Aligned_cols=200 Identities=29% Similarity=0.408 Sum_probs=161.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..+.+.+|+|.|.+.+++|+++||++.+|+.++|+||+|+||||++++|...+.+++|.|..++ +.-||
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 3578999999998788999999999999999999999999999999999999999999998754 35699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~ 471 (568)
.+||+.. ||.+ |...+.... .....+++...++.+.+....... .--.|||||||||+|||+++.+
T Consensus 341 ~VPQDtv--LFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 341 IVPQDTV--LFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cCcccce--ehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 9999874 6654 554444321 223445555544444333211111 1247999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+||+|||.||+||..+.+++...|++. +.|-++|.|.++.+-. +|+|+++++|+|++ .|+-+++
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~e-rg~h~~l 484 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGTHEEL 484 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEe-cCcHHHH
Confidence 9999999999999999999999999875 5799999999999975 79999999999986 4665544
No 377
>KOG0059|consensus
Probab=99.96 E-value=7.6e-29 Score=287.73 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=176.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
..+.++++++.|+....+++++||.|++||+.|++|+|||||||++++|+|..+|++|++.... +..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4678999999994332399999999999999999999999999999999999999999987632 3459
Q ss_pred EEEecCCCCCCCCCCCHHHHHH---HhcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~---~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
||+||+. .+++.+|..|.+. +..|++. +.+...|+.++|.++... +++.+|||+|+|+++|.|++.+|++
T Consensus 643 GyCPQ~d--~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 643 GYCPQFD--ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-QVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred ccCCchh--hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-chhhCCCcchhhHHHHHHHhcCCCE
Confidence 9999984 5889999998764 3345553 345678999999988875 7999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
++|||||+|+||.+++.+.+++.+. +++||++||.+++++..|+|+.+|-+|++..+ |+.+.++..
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci-Gs~q~LKsr 788 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI-GSPQELKSR 788 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe-cChHHHHhh
Confidence 9999999999999999999999876 23999999999999999999999999999754 676666643
No 378
>KOG0054|consensus
Probab=99.96 E-value=7.5e-28 Score=280.60 Aligned_cols=203 Identities=24% Similarity=0.375 Sum_probs=172.0
Q ss_pred CCCCeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 331 LPPPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
...+.++++|.+|+.+. ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|.++..+|+|..++. ++|++|.|
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~p 591 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQP 591 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEecccc
Confidence 34567999999999843 335899999999999999999999999999999999999999999988765 89999987
Q ss_pred CCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCC----------CCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 409 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP----------IRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~----------~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
...+-|+.|++......+.+..++.++...|..+....| --+||||||||++||||+.++++|+|||
T Consensus 592 ---WI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 592 ---WIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred ---HhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 334568999987666667788888888888876554433 2489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 479 EPTNNLDIESIDALAE-AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~-~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
-|++++|...-..|.+ .|..+ ++|+|+|||.+.++.. +|.|++|+||+|. ..|+|+++.+
T Consensus 669 DplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~-~~Gty~el~~ 731 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIV-ESGTYEELLK 731 (1381)
T ss_pred CcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEe-cccCHHHHHh
Confidence 9999999988666655 44443 5799999999999975 7999999999997 4799998764
No 379
>KOG0061|consensus
Probab=99.95 E-value=2.3e-27 Score=264.69 Aligned_cols=202 Identities=30% Similarity=0.373 Sum_probs=167.7
Q ss_pred CeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC---CccEEEECC--------C
Q psy16366 334 PVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP---NKGELRKSP--------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p---~~G~i~~~~--------~ 398 (568)
.-+.+++++...++. +.+|++||..+++|+++||+||+||||||||++|+|...+ .+|+|..++ +
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 346788888877443 6799999999999999999999999999999999999875 789998876 3
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh--cCC----C----HHHHHHHHHhCCCCCccccCCCC-----CCCHhHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL--FNL----P----YEKSRRQLGMFGLPSYAHTIPIR-----DLSGGQKARVA 463 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~--~~~----~----~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGqkqRv~ 463 (568)
..+||+.|+. .+++.+|+.|.+... ..+ + .+.+++++..+||....+. .++ .+|||||+||+
T Consensus 104 ~~s~yV~QdD--~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t-~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDD--VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADT-LIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEcccc--cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccc-eecCCCCCccccchhhHHH
Confidence 4689999985 589999999987532 111 2 2456788999999965554 554 59999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||.-|+.+|.||+|||||+|||..+...+.+.|+++ +.|||++=|.+. .+...-|++++|.+|+++ |.|+.++..
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~~~ 259 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRELL 259 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHHHH
Confidence 999999999999999999999999999999988765 679999999974 466677999999999886 667665443
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.2e-28 Score=223.95 Aligned_cols=123 Identities=42% Similarity=0.607 Sum_probs=104.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEEecCCCCCCCCCCCHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~l~~~~~~~e 420 (568)
|+||||+|++|++++|+|+||||||||+++|+|..+|++|.|.++. +..++|++|++ .++...++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP--QLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH--CHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 6899999999999999999999999999999999999999998653 35699999985 4777888877
Q ss_pred HHHHhcCCCHHHHHHHHHhCCCCCcccc---CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+. ....+..++..+++...... .++..||+||||||+||+||+.+|++||||||||
T Consensus 79 ~~------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 NE------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 71 23456777888887653332 2339999999999999999999999999999997
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=7.5e-28 Score=235.87 Aligned_cols=180 Identities=22% Similarity=0.231 Sum_probs=131.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEe-CCCEEEEECCCCChHHHHHHHHhcCc-CCCccEEEE----------CCCeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLD-MESRVALVGPNGIGKSTFLNLLKGEL-TPNKGELRK----------SPRLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~-~Ge~~~ivG~NGsGKSTLlk~l~G~~-~p~~G~i~~----------~~~~~i~ 402 (568)
-|+++|+. +|. +. .+++|... +|++++|+|||||||||||++|++.+ -+..+.... .....|+
T Consensus 5 ~i~l~nf~-~y~-~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFR-EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcC-Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 36788888 662 22 56677644 58999999999999999999999643 333333221 1234688
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHH--HHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc----------
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---------- 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~--L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~---------- 470 (568)
+.+|++...+. +.. ..+.+.+...+. +...++..... .++..|||||+||++||++++.
T Consensus 80 ~~f~~~~~~~~----~~r----~~gl~~~~~~~~~~l~~g~l~~~l~-~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~ 150 (213)
T cd03279 80 FTFQLGGKKYR----VER----SRGLDYDQFTRIVLLPQGEFDRFLA-RPVSTLSGGETFLASLSLALALSEVLQNRGGA 150 (213)
T ss_pred EEEEECCeEEE----EEE----ecCCCHHHHHHhhhhhhcchHHHhc-CCccccCHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 88887642211 101 114444443332 33344544444 4779999999999999999985
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|++++++++|.+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 57899999999999999999998888766 56999999999999999999999999875
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.8e-26 Score=231.29 Aligned_cols=180 Identities=22% Similarity=0.252 Sum_probs=127.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh--------cC--cCCCccEEEEC--CCeeEEEEecCCCCC------
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--------GE--LTPNKGELRKS--PRLRIGKFDQHSGEH------ 411 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~--------G~--~~p~~G~i~~~--~~~~i~~~~q~~~~~------ 411 (568)
.-|+|||++|+.|..++|+|++|||||||++.+. +. ..|..++.... .-..+-++.|.|...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3589999999999999999999999999998662 11 11322221110 111233444443210
Q ss_pred --------------------------------------CCCCCCHHHHHHHhcCC-CHHHHHHHHHhCCCCCccccCCCC
Q psy16366 412 --------------------------------------LFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIR 452 (568)
Q Consensus 412 --------------------------------------l~~~~~~~e~l~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~ 452 (568)
....+|+.|.+...... ....+.++|..+||......+++.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 11223333332211111 113345678899998633345789
Q ss_pred CCCHhHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE---
Q psy16366 453 DLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL--- 523 (568)
Q Consensus 453 ~LSgGqkqRv~lA~al~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l--- 523 (568)
+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.|.++ +.|||+||||++++. .||++++|
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~ 247 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE 247 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence 9999999999999999996 7999999999999999999999988765 679999999999996 69999999
Q ss_pred ---ECCeEEE
Q psy16366 524 ---EKKNIRK 530 (568)
Q Consensus 524 ---~~g~i~~ 530 (568)
.+|+++.
T Consensus 248 ~g~~~G~iv~ 257 (261)
T cd03271 248 GGDGGGQVVA 257 (261)
T ss_pred cCCCCCEEEE
Confidence 7888864
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=7.5e-26 Score=245.23 Aligned_cols=183 Identities=28% Similarity=0.357 Sum_probs=157.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
...++++|++..-|++.+++++.||+|++|+.+.|.||||||||||+|+|+|+-|--+|.|.......+-|+||.|.
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY--- 466 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY--- 466 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC---
Confidence 46899999999998888999999999999999999999999999999999999999999998877777999999984
Q ss_pred CCCCCHHHHHHHhc---CCCHHHHHHHHHhCCCCCccccC-----CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 413 FPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 413 ~~~~~~~e~l~~~~---~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
++.-|..+.+.... ..+.+++.+.|..+||.+...+. =-..||+||||||++||+|+++|++++|||-|++|
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL 546 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc
Confidence 45558888765322 25678888999999987533211 01479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh--cCceEEEEecchHHHHhhCc
Q psy16366 485 DIESIDALAEAIKN--YQGGVILVSHDERLIRETDC 518 (568)
Q Consensus 485 D~~~~~~l~~~l~~--~~~tvi~vsHd~~~i~~~~~ 518 (568)
|+++...+.+++++ .+.|||-|+|...+..-...
T Consensus 547 De~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 547 DEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 99999999999998 67899999999988765443
No 384
>KOG0066|consensus
Probab=99.94 E-value=7.6e-27 Score=237.90 Aligned_cols=201 Identities=24% Similarity=0.465 Sum_probs=160.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC---cCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE---LTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~---~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
-|.++|.+.+- .++.+|.|.|+.|-.|.++++|||||-||||||+.|+.- ++| ...+-++-|.....
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp---------nIDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP---------NIDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC---------CCceEeeeeeeeec
Confidence 37889999887 678899999999999999999999999999999999763 233 22334444432100
Q ss_pred ----------------------------C-CCCCCHHHHHHH------hcCC--CHHHHHHHHHhCCCCCccccCCCCCC
Q psy16366 412 ----------------------------L-FPDDTPCEYLMK------LFNL--PYEKSRRQLGMFGLPSYAHTIPIRDL 454 (568)
Q Consensus 412 ----------------------------l-~~~~~~~e~l~~------~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~L 454 (568)
+ -.+.|+.+.+.. ..+. ....+|++|.-+|++.....+|...+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 0 001111111110 0111 23456789999999998888899999
Q ss_pred CHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 455 SgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
|||-|.||+|||||...|-+|+|||||||||....-+|-+.|..|..|++|||||..|+..+|+.|+.+.+.++..|.|+
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy16366 535 FDDYREKLLTS 545 (568)
Q Consensus 535 ~~~~~~~~~~~ 545 (568)
|.-+++.+...
T Consensus 494 Y~~FKKmY~Qk 504 (807)
T KOG0066|consen 494 YTLFKKMYAQK 504 (807)
T ss_pred HHHHHHHHHHH
Confidence 88776544433
No 385
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.4e-26 Score=228.48 Aligned_cols=178 Identities=21% Similarity=0.259 Sum_probs=112.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC----------------cCCCccEEEECCCe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE----------------LTPNKGELRKSPRL 399 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~----------------~~p~~G~i~~~~~~ 399 (568)
++++|.- +| ++..++.+++ |++++|+||||||||||+++|+++ +.+.+|... ...
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~--~~~ 74 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV--MSA 74 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC--ceE
Confidence 3444442 46 4566777776 889999999999999999999844 334333100 012
Q ss_pred eEEEEecCCCCCCCCCC---CHH---HHHHH---hc--CCCHHHHHHHHHhCCCC--------------------Ccccc
Q psy16366 400 RIGKFDQHSGEHLFPDD---TPC---EYLMK---LF--NLPYEKSRRQLGMFGLP--------------------SYAHT 448 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~---~~~---e~l~~---~~--~~~~~~~~~~L~~~~l~--------------------~~~~~ 448 (568)
.+.++++++..++.... ++. .+... .+ ....+++...+..+++. ... .
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~-~ 153 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDE-Q 153 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccc-c
Confidence 23333333211111000 000 00000 00 01222333334443332 222 2
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 522 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~ 522 (568)
.++..||||||||++||++|+ .+|++|||||||++||+.+...+.+.|.++ +.+||++||+.+ +..+||++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~ 232 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYG 232 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEE
Confidence 467899999999999999996 368999999999999999999999999887 346777777755 5689999998
Q ss_pred EE
Q psy16366 523 LE 524 (568)
Q Consensus 523 l~ 524 (568)
|.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 86
No 386
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=212.61 Aligned_cols=188 Identities=20% Similarity=0.296 Sum_probs=118.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc-h----hHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD-D----SAV 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~-~----~~~ 133 (568)
+|+++|++.+|++..+|+||||+|.+||.++||||||||||||||||++.. .|.++.|.+.++.+.... . ..+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--CCCCceEEECCEeccchhhHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999975 345566655444432211 0 001
Q ss_pred HHHHhccHHHHHHHHHHHHHhh----------ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHh-cCCCc
Q psy16366 134 NIVLSADKNRVKLLKECSKLER----------DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAG-LGFTT 195 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~----------~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~-lg~~~ 195 (568)
+.|++. +.+..-...+++ ....+..++-.++++.+. -....++++++|.+++. |-+.+
T Consensus 80 GmVFQ~----fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 80 GMVFQQ----FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred Ceeccc----ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 122221 011110011111 000000111122222211 11224667777766654 33333
Q ss_pred ---cCCCch------HHH------HHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHH
Q psy16366 196 ---IYIPSS------RVH------EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKM 252 (568)
Q Consensus 196 ---L~~ePn------~L~------~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~ 252 (568)
|||||. +.. .-|++-|.|+|+|||++.|..+|||||+.|++|+++..+.+-+.|.+.
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999992 222 223456899999999999999999999999999998876544555543
No 387
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=6.6e-26 Score=227.72 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=121.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCc-cEEEEC--------------CCeeEEEEecCCCCC-------CCCCCCHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNK-GELRKS--------------PRLRIGKFDQHSGEH-------LFPDDTPC 419 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~--------------~~~~i~~~~q~~~~~-------l~~~~~~~ 419 (568)
..+++|+||||||||||+++|++++.|+. |.++.. ...++++++|++... +++..++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 56999999999999999999999998863 455431 124789999986321 22333333
Q ss_pred HHHHH-----h-cC---CCHHHHHHHHHhCCCCC-------------------ccccCCCCCCCHhHHHHHHHHHHHc--
Q psy16366 420 EYLMK-----L-FN---LPYEKSRRQLGMFGLPS-------------------YAHTIPIRDLSGGQKARVALAELTL-- 469 (568)
Q Consensus 420 e~l~~-----~-~~---~~~~~~~~~L~~~~l~~-------------------~~~~~~~~~LSgGqkqRv~lA~al~-- 469 (568)
+.+.. . .+ ...+++.++|..+++.. .....++.+||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 22110 0 11 23467788999999861 1122467899999999999999997
Q ss_pred --cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE
Q psy16366 470 --NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 470 --~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
.+|++|||||||++||+.+...+.+.|.++ +.+||+|||+.+.+. .||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 578999999999999999999999999875 458999999966665 689998765
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=5.8e-27 Score=213.43 Aligned_cols=203 Identities=25% Similarity=0.334 Sum_probs=156.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+++++||+.+- -|-.+|.++..|+++-+||||||||||||-.|+|++ |.+|+|...+. ..-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57788887543 467889999999999999999999999999999997 57999986532 23467
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc-----CC--Ce
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-----NP--DI 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~-----~p--~l 474 (568)
+.|+.... ..+.++.|+...... ....+..+...+++++.+.+ .+..|||||-|||-||..+++ +| ++
T Consensus 77 LsQqq~p~--f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~R-s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 77 LSQQQTPP--FAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred HhhccCCc--chhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhh-hhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 87775422 235667776432211 12345677888999987775 689999999999999998876 33 69
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH-HHHHHHHHHh
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLTSLG 547 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~-~~~~~~~~~~ 547 (568)
||+|||.|+||.....+|-..|.++ +.+|||++||++--.+.++++|.+..|++.. .|..++ ++..++....
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~-~G~~~eVlt~~vL~q~f 229 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA-SGRREEVLTPPVLAQAY 229 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe-ecchhhhcChHHHHHHh
Confidence 9999999999998877777766655 6799999999999999999999999999975 455444 4555655543
No 389
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=4.1e-27 Score=230.20 Aligned_cols=176 Identities=22% Similarity=0.298 Sum_probs=125.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
|+++|.. .| ++..++++++| ++++|+||||||||||+++|.-.+-.. +......++++++++. .+++.
T Consensus 6 l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~---~~~~~~~~i~~~~~~~--~~~~~ 73 (212)
T cd03274 6 LVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFR---ASKMRQKKLSDLIHNS--AGHPN 73 (212)
T ss_pred EEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccC---HHHhhhhhHHHHhcCC--CCCCC
Confidence 5677776 78 67789999988 899999999999999999998221110 0011123466766654 23444
Q ss_pred CCHHHHHHH-----------hcCCCHH--H----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc----CCCe
Q psy16366 416 DTPCEYLMK-----------LFNLPYE--K----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN----NPDI 474 (568)
Q Consensus 416 ~~~~e~l~~-----------~~~~~~~--~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~----~p~l 474 (568)
.+..+++.. ..+.... . ..++++.++++...+. ++..||+|||||++||++++. +|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~-~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 74 LDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWK-NISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccccccc-chhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 444332111 1122111 1 1345567778765554 678999999999999999964 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+||||||++||+.+...+.+.|.++ ++++|+|||+. .+..+||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 9999999999999999999999887 36899999996 55679999999863
No 390
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=1.2e-25 Score=218.64 Aligned_cols=157 Identities=32% Similarity=0.387 Sum_probs=119.3
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHh----cCcCCCccEEEE--------CCCeeEEEEecCC-CCCCC--CCCCHH
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLK----GELTPNKGELRK--------SPRLRIGKFDQHS-GEHLF--PDDTPC 419 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~----G~~~p~~G~i~~--------~~~~~i~~~~q~~-~~~l~--~~~~~~ 419 (568)
.++++.+| +++|+|||||||||||++|. |...|+.|.+.. .....+++++|++ ...+. ...++.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 44566677 99999999999999999994 999998875431 1245789999887 22221 122444
Q ss_pred HHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHH------HHHHHHHccCCCeEEEeCCCCCCCHHHHH-HH
Q psy16366 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR------VALAELTLNNPDILILDEPTNNLDIESID-AL 492 (568)
Q Consensus 420 e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR------v~lA~al~~~p~lLlLDEPt~~LD~~~~~-~l 492 (568)
+.+.. ....++.+.+ ..++..||+||+|| ++||++++.+|++|||||||++||+.+.. .+
T Consensus 95 ~~~~~---~~~~~~~~~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l 161 (204)
T cd03240 95 ENVIF---CHQGESNWPL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL 161 (204)
T ss_pred hceee---echHHHHHHH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH
Confidence 44321 1233333333 23678999999996 78999999999999999999999999999 99
Q ss_pred HHHHHhc----CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 493 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 493 ~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.+.|.++ +.+||+||||++++. .|+++|.|++.
T Consensus 162 ~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 162 AEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred HHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 9998765 458999999999885 68999998754
No 391
>KOG0063|consensus
Probab=99.93 E-value=4e-24 Score=218.13 Aligned_cols=179 Identities=23% Similarity=0.339 Sum_probs=138.2
Q ss_pred EEeCCCceeeeeeeEEEeCCC-----EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLDMES-----RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~~Ge-----~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~ 417 (568)
+.||+-+..+.+..+.|..|+ ++..+|.||.|||||+++++|.++|+.|.= -+...++|-+|....- ..-+
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e--~p~lnVSykpqkispK--~~~t 418 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGE--IPVLNVSYKPQKISPK--REGT 418 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCc--ccccceeccccccCcc--ccch
Confidence 567766777888899998885 589999999999999999999999998731 2345788888875421 1234
Q ss_pred HHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 418 PCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 418 ~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
+...+... .....+-+.+.++-+.++...+. .+..|||||+|||+||.+|-..+++++.|||.+.||.+.+..-..
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dq-evq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQ-EVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhH-HhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 44444321 12344555666777766655543 578999999999999999999999999999999999998766555
Q ss_pred HHHh----cCceEEEEecchHHHHhhCceEEEEECC
Q psy16366 495 AIKN----YQGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 495 ~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.+++ .+.|-.+|.||.-.+...+|++++.+..
T Consensus 498 vikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 498 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred HHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 5554 4689999999999999999999988754
No 392
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=212.86 Aligned_cols=182 Identities=21% Similarity=0.306 Sum_probs=127.1
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC--------------ceEEEEec
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS--------------IDLLYCEQ 123 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~--------------~~i~~~~q 123 (568)
..|+++|++|+|+++++|+||||+|.+|++++||||||+|||||+|+|.|...|..+. ..|.|++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 4799999999998768999999999999999999999999999999999964432221 35789998
Q ss_pred cccCC---chhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCC
Q psy16366 124 EVEAS---DDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 124 e~~~~---~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~ 193 (568)
....+ +.++.+.|......+..++.. .+..+...+.++++++ +.++..|+++++|..||..-.
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~-------~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRR-------LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred ccccCCCCCcCHHHHHHccCccccccccc-------ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 65433 233334443221111111100 0111123334444433 356778999999999887655
Q ss_pred Cc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+. ++||| .+|.++-++ ++|||+||||++.+...||+|+.|+.. +.. .|+.+.+
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~~-~G~~~~~ 225 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRH-LIA-SGPPEEV 225 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCe-eEe-ccChhhc
Confidence 54 88999 266666666 999999999999999999999999764 444 3544433
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=9.5e-25 Score=215.78 Aligned_cols=178 Identities=22% Similarity=0.304 Sum_probs=122.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-------------------E
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-------------------L 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i-------------------~ 119 (568)
.++++|+||+|+++++|+|+||+|.+|++++|+||||||||||||+|+|... |..+.| .
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEE
Confidence 5789999999999999999999999999999999999999999999999643 333333 4
Q ss_pred EEeccccCC-chhHHHHHHhccHHHHHHHHHHHHHhhcc--CCChHHHHHHHHHHH-------hccCCCChHHHHHHHHH
Q psy16366 120 YCEQEVEAS-DDSAVNIVLSADKNRVKLLKECSKLERDE--SGDNQLRLTEVYDEL-------KSIEADAAEPRARRILA 189 (568)
Q Consensus 120 ~~~qe~~~~-~~~~~~~v~~~~~~~~~l~~~~~~l~~~~--~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~ 189 (568)
|++|+.... ..++.+.|.......... +. ...+.+.+.+.++.+ +.+...++++|++..++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~---------~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGL---------FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCccccc---------ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHH
Confidence 555553222 222222222111100000 11 011122233333332 23455688899988887
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
..-.+. |+|||. .+.++.++.+.|+|+|.||+++...+||+++.|.+|+++..+.+-+
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcch
Confidence 665443 899992 3445555668999999999999999999999999999998766543
No 394
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.3e-25 Score=225.48 Aligned_cols=194 Identities=25% Similarity=0.318 Sum_probs=147.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCC---C-
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG---E- 410 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~---~- 410 (568)
-|+++||.|.|+....=+..||++|++||++-|+|.||||||||+++|+|+++|++|+|.+++..- +.+.. .
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV----~~e~ledYR~ 397 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----SAEQLEDYRK 397 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC----CCCCHHHHHH
Confidence 589999999996554668899999999999999999999999999999999999999998875320 00000 0
Q ss_pred ---CCCCCCCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccc----cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 411 ---HLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAH----TIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 411 ---~l~~~~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~----~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
..|.+.-..+.+....+ .+.+.+..+|.++.+.+... ....-.||.|||+|+++.-|++.+.+||++||-.+
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 00111111111112222 35677788888776653211 11245899999999999999999999999999999
Q ss_pred CCCHHHHHHHHH----HHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcC
Q psy16366 483 NLDIESIDALAE----AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 533 (568)
Q Consensus 483 ~LD~~~~~~l~~----~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g 533 (568)
..||.-++.+.. .+++.|+||+.||||-.... .+||++.+++|++++..|
T Consensus 478 DQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred cCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 999998877655 45788999999999977653 689999999999987654
No 395
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=209.48 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=122.5
Q ss_pred cceEEeeeEEEeCCce----eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc----
Q psy16366 58 VDIKVENFSLSAKGVE----LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD---- 129 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~---- 129 (568)
.+++++|+++.|++.. +|++|||+|.+||++||||+||||||||+|+|+|..- |..+.|.+.+.+.....
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchh
Confidence 4789999999998877 9999999999999999999999999999999999743 44555555444433211
Q ss_pred -hhHHHHHHhccHHHHHHHHHH-HHHh-hccC---CChHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCC-
Q psy16366 130 -DSAVNIVLSADKNRVKLLKEC-SKLE-RDES---GDNQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFT- 194 (568)
Q Consensus 130 -~~~~~~v~~~~~~~~~l~~~~-~~l~-~~~~---~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~- 194 (568)
...++.|++.+..-..-..-. ..+. .+.. .+.+.+..++++.+. .....++++++|.+++..-..
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 112333443322211100000 0000 0111 112333444444331 122347788888777654333
Q ss_pred c---cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 195 T---IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 195 ~---L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
+ ++||| |.|.++-+.++.|+|+||||...+..+||||++|++|+++...
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 2 88999 3566777788999999999999999999999999999999754
No 396
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.9e-24 Score=216.53 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=114.0
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------------CeeEEEEec--CCCCCCCCCC---CHHHH
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------RLRIGKFDQ--HSGEHLFPDD---TPCEY 421 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------~~~i~~~~q--~~~~~l~~~~---~~~e~ 421 (568)
.+++|+|||||||||||.+|++.+.+..|.++... ...+...++ ++...++... ....+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 39999999999999999999999987767664311 123333333 2211111100 00000
Q ss_pred HHHhcCCCHHHHHHHHHhCCCCCcc---------------------ccCCCCCCCHhHHHHHHHHHHHccC----CCeEE
Q psy16366 422 LMKLFNLPYEKSRRQLGMFGLPSYA---------------------HTIPIRDLSGGQKARVALAELTLNN----PDILI 476 (568)
Q Consensus 422 l~~~~~~~~~~~~~~L~~~~l~~~~---------------------~~~~~~~LSgGqkqRv~lA~al~~~----p~lLl 476 (568)
...........+.+++..+|+.... ...++.+||+|||||++||++++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 0011123455667788888885221 1123589999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
|||||++||+.+...+.+.|.++ +.+||+||||.+++ ..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 99999999999999999999876 46899999998877 57999988863
No 397
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=9.1e-24 Score=204.47 Aligned_cols=160 Identities=20% Similarity=0.213 Sum_probs=116.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-----cE----EEE--CCCeeEEEEecCCCCCCCCCCCHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-----GE----LRK--SPRLRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-----G~----i~~--~~~~~i~~~~q~~~~~l~~~~~~~e 420 (568)
++++++++.+| +++|+|||||||||||..|...+.... |. +.. .....|.+.+++.. ++..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~~~----- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LDAN----- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--ccCC-----
Confidence 46777887776 789999999999999999875433221 11 000 11345777777653 3321
Q ss_pred HHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al----~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
.........+.++|.. .... ..++.+||+|||||++||+++ +.+|++|||||||++||+.+...+.+.|
T Consensus 84 ---~~~~~~~~~~~~~l~~---~~~~-~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l 156 (198)
T cd03276 84 ---PLCVLSQDMARSFLTS---NKAA-VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLL 156 (198)
T ss_pred ---cCCHHHHHHHHHHhcc---cccc-CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHH
Confidence 0111123456666665 3333 457899999999999999999 6899999999999999999999998888
Q ss_pred Hhc-----C-ceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 497 KNY-----Q-GGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 497 ~~~-----~-~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
.+. + .+||++||+++.+..+ |+|-++..+.
T Consensus 157 ~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 157 VKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 663 2 3799999999999886 8998887643
No 398
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=203.10 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=114.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHh
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 138 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~ 138 (568)
.+.+++++++|++..+|+|+||+|.+||+++||||||||||||||+|+|... |..+.+...++++ ......+..++|
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCCCCEEEEec
Confidence 5889999999999999999999999999999999999999999999999743 3444444444433 111111122222
Q ss_pred ccHHHHHHHHHHHHHhh-cc-----CCChHHHHHHHHHHHhcc-------CCCChHHHHHHHHHhcCCCc----cCCCc-
Q psy16366 139 ADKNRVKLLKECSKLER-DE-----SGDNQLRLTEVYDELKSI-------EADAAEPRARRILAGLGFTT----IYIPS- 200 (568)
Q Consensus 139 ~~~~~~~l~~~~~~l~~-~~-----~~~~~~~l~~v~~el~~~-------~~~~~~~~~~~~L~~lg~~~----L~~eP- 200 (568)
.+. ..-.....+.... +. ..+...+..+.++.+..- ...|+++++|.+++..-... |+|||
T Consensus 80 ~~~-LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 80 EDA-LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred cCc-ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111 0000000000000 00 011122333344333211 12478889988887643332 88999
Q ss_pred ------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCC
Q psy16366 201 ------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMK 237 (568)
Q Consensus 201 ------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g 237 (568)
+||.++.++.+.|||+||||.++.-.++|||++|.++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 3788888888999999999999999999999999984
No 399
>KOG2355|consensus
Probab=99.90 E-value=5.9e-23 Score=191.78 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=154.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe-----------eE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL-----------RI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~i 401 (568)
.-.+++.++.|.|+...|++-|+|++++.|++..+||.||||||||||+|+|-.-.-.|.|....+. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 3468999999999877899999999999999999999999999999999999876666777653321 12
Q ss_pred EEEecC--------CCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQH--------SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~--------~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
.|+--. ..-.+..+.++...+....+...++-..++..+.++- . -+++.+|-|||+||.||.-|+..-+
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl-~--WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL-R--WRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc-e--EEEeeccccchhhhHHHHhccccee
Confidence 222110 0011233455555554444555555556677776652 2 2468899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||||||-|-.||.-.+..|.+.+++- +.|||+.||-.+=+....++++.|.+|+++.
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999753 6799999999999999999999999999964
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=1.6e-23 Score=196.12 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=164.6
Q ss_pred CeEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE-----EEC--------C
Q psy16366 334 PVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----RKS--------P 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i-----~~~--------~ 397 (568)
|+|.+.|++..+. |-..+++++|+++..||+-|+||.+|||||-..|.|+|..+-. =.| +.+ +
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhhcCCh
Confidence 4677888887773 2336899999999999999999999999999999999987632 112 111 1
Q ss_pred -------CeeEEEEecCCCCCCCCCCCHHHHHH-------------HhcCCCHHHHHHHHHhCCCCCccc--cCCCCCCC
Q psy16366 398 -------RLRIGKFDQHSGEHLFPDDTPCEYLM-------------KLFNLPYEKSRRQLGMFGLPSYAH--TIPIRDLS 455 (568)
Q Consensus 398 -------~~~i~~~~q~~~~~l~~~~~~~e~l~-------------~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~LS 455 (568)
...|+++||+|..-+.+..++-..+. ..+++....+-++|.++|+.++.+ ..++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 13578999998766666555433322 223445556678899999976432 34678999
Q ss_pred HhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 456 gGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
.||-|+|+||.|++.+|++||.|||||.+|+.+...+..+|... +.||+++|||+..+.+.||++-||.=|+-++-
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 99999999999999999999999999999999999998888655 46899999999999999999999988875432
Q ss_pred -------cCCHHHHHHHHHHHHhh
Q psy16366 532 -------NGDFDDYREKLLTSLGE 548 (568)
Q Consensus 532 -------~g~~~~~~~~~~~~~~~ 548 (568)
..+-..|...++..+..
T Consensus 241 a~~e~l~~~PhHPYTqALi~a~PD 264 (330)
T COG4170 241 APSEELVTMPHHPYTQALIRAIPD 264 (330)
T ss_pred cchhHHhcCCCCchHHHHHHhCcc
Confidence 22334577777776654
No 401
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4e-23 Score=204.36 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=130.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh------H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS------A 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~------~ 132 (568)
+|.++|+++.|+...+++|+||.|..||.++|.||||||||||||+|||... |..+.|.+- +++..+... .
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~-~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLN-GRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEEC-CEeccchhccchhhcc
Confidence 6899999999999999999999999999999999999999999999999754 455555443 332222111 1
Q ss_pred HHHHHhccHHHHHHHHHHHHHhh-c----cCC---ChHHHHHHHHHHHh--cc-----CCCChHHHHHHHHHhcCCCc--
Q psy16366 133 VNIVLSADKNRVKLLKECSKLER-D----ESG---DNQLRLTEVYDELK--SI-----EADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~-~----~~~---~~~~~l~~v~~el~--~~-----~~~~~~~~~~~~L~~lg~~~-- 195 (568)
++.|++. ...+.-+...+.+.. + ..+ ....+..++++.++ .+ .-.++++++|.+|+..-...
T Consensus 79 VGfvFQ~-YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 79 VGFVFQH-YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred eeEEEec-hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 2222221 111111111111111 1 111 12334444544332 11 12478889999987754332
Q ss_pred --cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 196 --IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 196 --L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
|+||| .||.++..+++.|.|+||||+++...+||||++|++|+|...+.+++.|.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 88999 29999999999999999999999999999999999999998877777764
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=4.7e-21 Score=209.41 Aligned_cols=105 Identities=28% Similarity=0.356 Sum_probs=87.4
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEec
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 508 (568)
+.|..+||.-...-+|..+|||||.|||-||.-|.... -++||||||.||=..-+..|++.|.++ +-|||+|.|
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34677888866666788999999999999999999887 899999999999999999999888765 679999999
Q ss_pred chHHHHhhCceEEEEE-----CCeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWALE-----KKNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~-----~g~i~~~~g~~~~~~~ 540 (568)
+++.|. .||.|+-|- +|.-+...|++++..+
T Consensus 884 NLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 884 NLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999995 578887763 3333447898888754
No 403
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=2.5e-22 Score=193.79 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=118.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh----HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS----AVN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~----~~~ 134 (568)
+|+++|+|++|+++.+++|+||+|+.||+++|||||||||||+||+|++.. -|..+.|...+.++...+.. .++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi--ept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI--EPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc--CCCCceEEECCeecccCCHHHHHHhhh
Confidence 589999999999999999999999999999999999999999999999863 35566776666666543322 133
Q ss_pred HHHhccHHH--HHHHHHHHHHhhccCCCh---HHHHHHHHHHHhc---------cCCCChHHHHHH-HHHhcCCCc---c
Q psy16366 135 IVLSADKNR--VKLLKECSKLERDESGDN---QLRLTEVYDELKS---------IEADAAEPRARR-ILAGLGFTT---I 196 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~l~~~~~~~~---~~~l~~v~~el~~---------~~~~~~~~~~~~-~L~~lg~~~---L 196 (568)
+|++...-. ....+...-...+..++. ..+..++++.+.. ....++++++|. ++.+|-..+ |
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 343321000 000000000001122222 2233333332210 011234444332 111121222 7
Q ss_pred CCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 197 YIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 197 ~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+||| +-+.++-+++++|+|+||||.++....+|||.+|++|+++-|..+-+..
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 8888 1344555678999999999999999999999999999999987654443
No 404
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=2.2e-22 Score=207.43 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=130.7
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNI 135 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~ 135 (568)
..|+++|++.+|++..+++|+||+|.+||+++|+||||||||||||+|||-. .|.++.|.+.++++...+. ..+..
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--QPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCChhhcccce
Confidence 4689999999999999999999999999999999999999999999999964 4666777776666543321 22344
Q ss_pred HHhccHHHHHHHHHHHHHhh-cc--C--C--ChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCCc----cC
Q psy16366 136 VLSADKNRVKLLKECSKLER-DE--S--G--DNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFTT----IY 197 (568)
Q Consensus 136 v~~~~~~~~~l~~~~~~l~~-~~--~--~--~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~~----L~ 197 (568)
|++.-. .+--+...+.... +. . . +...+..++++.+ +.....++++++|.+|+.--... |+
T Consensus 82 VFQ~YA-LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 82 VFQSYA-LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eecCcc-cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 443210 0000000000000 00 0 0 1122334433322 12223477888998887643332 88
Q ss_pred CCc--h-----------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHH
Q psy16366 198 IPS--S-----------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKK 251 (568)
Q Consensus 198 ~eP--n-----------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~ 251 (568)
||| + -|.++.++.|.|.|+||||++....++|||++|++|+|.-.+.+.+.|.+
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999 1 35566777899999999999999999999999999999877666666654
No 405
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.8e-22 Score=199.10 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=112.3
Q ss_pred cceEEeeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC-Cch----h
Q psy16366 58 VDIKVENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA-SDD----S 131 (568)
Q Consensus 58 ~~I~i~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~-~~~----~ 131 (568)
.+|.++|++|+|++. ++|+++||+|.+|++++|+|+||||||||+++|+|...| ..+.+.+.+.+... .+. .
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeeccchhhHHHhhc
Confidence 368899999999765 999999999999999999999999999999999997543 33444332222210 000 0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhh-ccC-C----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 132 AVNIVLSADKNRVKLLKECSKLER-DES-G----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 132 ~~~~v~~~~~~~~~l~~~~~~l~~-~~~-~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
.+..|++.+...+-.-...+++.. ..+ + +...+..++.+.+. .....|++++.|.+++++-...
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 111222221111100000000100 000 0 01112222222211 1112344555555555442222
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
++|||. .+.++.+..+.|+|+||||++++..+||++++|++|++...+.+++.|.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 888982 3444444557899999999999999999999999999987655555554
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=2.1e-21 Score=232.53 Aligned_cols=104 Identities=24% Similarity=0.310 Sum_probs=89.1
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEec
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSH 508 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsH 508 (568)
+.|..+||.-....++..+|||||.||+-||.-|..+ +.++||||||+||++..++.|++.|++ .+.|||+|.|
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH 1760 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDH 1760 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4678899987766778899999999999999999875 789999999999999999999999665 4789999999
Q ss_pred chHHHHhhCceEEEEEC------CeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWALEK------KNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~~------g~i~~~~g~~~~~~~ 540 (568)
|++++.. ||.|+-|.. |+| .+.|+++++.+
T Consensus 1761 ~~~~i~~-aD~iidlgp~gG~~GG~i-va~Gtp~~i~~ 1796 (1809)
T PRK00635 1761 DPALLKQ-ADYLIEMGPGSGKTGGKI-LFSGPPKDISA 1796 (1809)
T ss_pred CHHHHHh-CCEEEEcCCCcccCCCEE-EEEeCHHHHhh
Confidence 9999986 899988852 345 47899887754
No 407
>KOG0060|consensus
Probab=99.88 E-value=5.7e-22 Score=209.60 Aligned_cols=190 Identities=22% Similarity=0.265 Sum_probs=153.2
Q ss_pred CCCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe---eEEEEecC
Q psy16366 332 PPPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL---RIGKFDQH 407 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---~i~~~~q~ 407 (568)
.+..+++++|++.-|. +..+++|+||+|..|+.+.|.||||||||+|||.|+|+-+-.+|.+....+. .+-|+||.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 4578999999999876 5568889999999999999999999999999999999999999999876543 48899999
Q ss_pred CCCCCCCCCCHHHHHHHh--------cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 408 SGEHLFPDDTPCEYLMKL--------FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~--------~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
|. ++.-|..+.+... ...+.+.+.+.|+.++|.+...+ .=...||+||+||+++||.+.
T Consensus 510 PY---mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 510 PY---MTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred CC---ccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 84 3333666643211 12345566666666655432111 113589999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
.+|++-||||-|+++|.+...++.+.+++.+.|.|-|+|...+..- -+.++-|..
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf-Hd~~L~~~g 641 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF-HDYVLRMDG 641 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh-hhEEEEecC
Confidence 9999999999999999999999999999999999999999999864 455655553
No 408
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.88 E-value=4.4e-22 Score=204.09 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=130.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh--HHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS--AVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~--~~~~v 136 (568)
.|+++|++++|++..+++++||+|..||+++|+||||||||||||+|||... |.++.+...+..+...++. -+..|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEE
Confidence 6899999999987669999999999999999999999999999999999743 4556666655555432211 11222
Q ss_pred HhccHHHHHHHHHHHHHhh-c-----cCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 137 LSADKNRVKLLKECSKLER-D-----ESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~-----~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+|... .+--+...+.+.. + ...+...++.++.+-|. .....++++++|.+++..-... |+||
T Consensus 81 FQ~yA-LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 81 FQNYA-LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred eCCcc-ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 22110 0000000001100 0 11122344455444331 2345688899998887665554 9999
Q ss_pred c--h-----------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHH
Q psy16366 200 S--S-----------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKK 251 (568)
Q Consensus 200 P--n-----------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~ 251 (568)
| | .+.++-++++.|+|.||||+.++..++|||++|++|+|.-.+.+-+.|.+
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9 2 45566667889999999999999999999999999999988877777754
No 409
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.1e-21 Score=194.58 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=129.6
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~ 133 (568)
+|+++++|+.|.. ..+++||||+|++||++||||.||+|||||+|+|++.. -|..+.+.+.++++...+...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le--~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--RPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEEcCEecccCChHHH
Confidence 5899999999865 47999999999999999999999999999999999974 4677788888877765443322
Q ss_pred H-------HHHhccHHHHHHHHHHHHHhh----c--cC---CChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHh
Q psy16366 134 N-------IVLSADKNRVKLLKECSKLER----D--ES---GDNQLRLTEVYDELKS-------IEADAAEPRARRILAG 190 (568)
Q Consensus 134 ~-------~v~~~~~~~~~l~~~~~~l~~----~--~~---~~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~ 190 (568)
. ++++. +.++.......+ + .. .+...|..++++-+.. ..-.++++++|..++.
T Consensus 79 r~~R~~IGMIFQh----FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 79 RQLRQKIGMIFQH----FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHhhccEEecc----ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 1 11110 111111000000 0 01 1113344444433211 1123666777766554
Q ss_pred cCCC-c---cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHH
Q psy16366 191 LGFT-T---IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY 253 (568)
Q Consensus 191 lg~~-~---L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~ 253 (568)
.-.. + |.||| ..|.++.++++.|||+|||-++++..+|||+.+|++|+++..+.-.+.|...+
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 3222 2 55666 26778888999999999999999999999999999999999888788886544
Q ss_pred H
Q psy16366 254 V 254 (568)
Q Consensus 254 ~ 254 (568)
.
T Consensus 235 ~ 235 (339)
T COG1135 235 H 235 (339)
T ss_pred h
Confidence 3
No 410
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=7e-22 Score=189.73 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=122.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHH
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 136 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v 136 (568)
...|++++++++|+++.+++|+||+|.+||..+|+||||||||||||+|.|.. -|..+.+...+.++...+......+
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll--~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL--RPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC--CCCCCeEEEcCcchhccCHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999974 3566677777777654433222111
Q ss_pred HhccHHHHHHHHHHHHHhh----c--------cCCCh-HHHH-HHHHHHHhccCC-----------CChHHHHHHHHHhc
Q psy16366 137 LSADKNRVKLLKECSKLER----D--------ESGDN-QLRL-TEVYDELKSIEA-----------DAAEPRARRILAGL 191 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~----~--------~~~~~-~~~l-~~v~~el~~~~~-----------~~~~~~~~~~L~~l 191 (568)
. .+.+.+.|..+|-. + +...- ...+ .-+...|+..|. .+++.+-|.+|+..
T Consensus 84 r----~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 84 R----KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred H----hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 1 01111111111100 0 00000 1111 112233333332 24555666666542
Q ss_pred -CCCc---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 192 -GFTT---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 192 -g~~~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
-+.+ ++|||. .+.++....+.|+++||||.+.+..+||||++|.+|++.+ .|+.++..
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~-~Gt~~el~ 234 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA-EGTPEELL 234 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE-eCCHHHHH
Confidence 2333 789992 3445555678999999999999999999999999999986 46666543
No 411
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.8e-21 Score=191.60 Aligned_cols=181 Identities=19% Similarity=0.279 Sum_probs=108.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh---HHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS---AVNIV 136 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~---~~~~v 136 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++...... .+..+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEe
Confidence 578999999998899999999999999999999999999999999999643 3334443332222110000 00000
Q ss_pred HhccHH--HHHHHHHHH---HHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 137 LSADKN--RVKLLKECS---KLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 137 ~~~~~~--~~~l~~~~~---~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+...- .....+... ............+..++.+.+. .+...+.+++.+..++..-+.. |+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000000 000000000 0000000001112233333321 1234577777777665543333 88999
Q ss_pred h---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 201 S---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 201 n---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++ .++.++.+.|||+||||++++..+||+|++|++|++...
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 1 33 333333478999999999999999999999999999764
No 412
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2e-21 Score=193.23 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=113.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch---hH----
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD---SA---- 132 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~---~~---- 132 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++..... ..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999988899999999999999999999999999999999999643 344555544433321110 00
Q ss_pred HHHHHhccHHH--HHHHHHHHH-HhhccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNR--VKLLKECSK-LERDESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~--~~l~~~~~~-l~~~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+..... ....+.... ......... ..+..++.+.+. .+...+.+++++..++..-+..
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 01111110000 000000000 000000000 122233333321 1233577777777766543332
Q ss_pred cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++.. .|+.+.+
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEEL 224 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHH
Confidence 889991 44444433 47899999999999999999999999999975 4555543
No 413
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.87 E-value=2.6e-21 Score=194.84 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=110.9
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce--------------EEEEe
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID--------------LLYCE 122 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~--------------i~~~~ 122 (568)
...|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|...| ..+. +.|+.
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHHHhhCceEEEe
Confidence 3569999999999988999999999999999999999999999999999997433 2333 33444
Q ss_pred ccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCC
Q psy16366 123 QEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 123 qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~ 194 (568)
|+..... .+..+.+..... .....+..++.+.+ ......+.+++++..++..-+.
T Consensus 88 q~~~l~~~~tv~enl~~~~~-----------------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLK-----------------GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred cCccCCCCCcHHHHHHhccc-----------------chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 4432221 122111110000 00011112222221 1123457777777766554333
Q ss_pred c----cCCCch---------H----HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 195 T----IYIPSS---------R----VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 195 ~----L~~ePn---------~----L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++|||. + |.++.+..+.|||+||||++++..+||+|++|++|+++..
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 2 889991 3 3444344578999999999999999999999999999763
No 414
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.4e-21 Score=191.25 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=108.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v~ 137 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++..... ..+..+.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEc
Confidence 468999999988899999999999999999999999999999999999643 334444433332211000 0000000
Q ss_pred hcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 138 SAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 138 ~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.. .....+ ................+..++.+.+. .....+.+++.+..++..-... ++|||
T Consensus 79 q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 79 QDYALFPHLTVAENI-AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred CchhhccCCcHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000 000000 00000000000000112222333221 1233577777777766543332 88999
Q ss_pred h---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 201 S---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 201 n---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
. ++.+++++ .+.|||+||||.+++..+||+|++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 2 45555543 47899999999999999999999999999864
No 415
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=195.00 Aligned_cols=187 Identities=17% Similarity=0.270 Sum_probs=115.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~~ 134 (568)
.|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++....... +.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5889999999988899999999999999999999999999999999999643 34455544443332111000 00
Q ss_pred HHHhccHHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 135 IVLSADKNRVKLLKECSKLER--DESGDNQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~~--~~~~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+.+. ..... ....+.+.. ........+..++.+.+. .....+.+++.+..|+..-... ++|||
T Consensus 81 ~~~q~-~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 81 MVFQQ-PHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EEecC-chhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00010 00000 000000100 000111122233333321 1233567777777665543332 88999
Q ss_pred h---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 201 S---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 201 n---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++.++++ ..+.|||+||||++++..+||+|++|++|+++..+.+.+.+
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 1 4444443 34789999999999999999999999999998766555444
No 416
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=2.2e-21 Score=189.88 Aligned_cols=180 Identities=22% Similarity=0.228 Sum_probs=107.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v~ 137 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++..... ..+..+.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEe
Confidence 478999999998899999999999999999999999999999999999743 333444333322211000 0000000
Q ss_pred hcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 138 SAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 138 ~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.. .....+ ................++.++.+.+. .+...+.+++.+..++..-+.. ++|||
T Consensus 79 q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 79 QNYALYPHMTVYDNI-AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred cChhhccCCCHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000 000000 00000000000000112222222221 1234577777776665443332 88999
Q ss_pred h---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 201 S---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 201 n---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++.++++ +.+.|||+||||++++..+||+|++|++|+++.+
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 2 4444443 3478999999999999999999999999999764
No 417
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.6e-21 Score=202.90 Aligned_cols=173 Identities=22% Similarity=0.260 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-----------------E
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY-----------------C 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~-----------------~ 121 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+ +
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEE
Confidence 7999999999998899999999999999999999999999999999999743 33344433 3
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+...... +..+.+... + . .......+...++.++.+.+. .....+.++++|.+|+..-.
T Consensus 84 fQ~~~lfp~~tv~eNi~~~------l-~----~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYG------L-K----MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred eCCcccCCCCCHHHHHHHH------H-h----HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 333222111 111111000 0 0 000000001122333333221 22345788888887766544
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
.. |+|||. .|.++.++++.|+|+||||++++..+||+|++|++|++...+.
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 33 889991 3445555668999999999999999999999999999987543
No 418
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.5e-22 Score=195.26 Aligned_cols=185 Identities=20% Similarity=0.270 Sum_probs=111.1
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
..+++++++.+|||-.+++||||++++||++|||||||||||||+++|+|-. -|..+.+.+.++++.......
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~--~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY--KPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc--cCCCceEEECCcccCCCCHHHHHhcc
Confidence 3578999999999999999999999999999999999999999999999963 355677777777665433221
Q ss_pred ----------------HHHHHhccHHHHHHHHHHHHHhhccCC--Ch---HHHHHHHHHHHhcc-------CCCCh-HHH
Q psy16366 133 ----------------VNIVLSADKNRVKLLKECSKLERDESG--DN---QLRLTEVYDELKSI-------EADAA-EPR 183 (568)
Q Consensus 133 ----------------~~~v~~~~~~~~~l~~~~~~l~~~~~~--~~---~~~l~~v~~el~~~-------~~~~~-~~~ 183 (568)
.+.|+-....+.. .......... .. .++..++++.+... +..+. ++|
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~----~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLG----LSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhh----hhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 1111111000000 0000000000 00 11111222211100 00111 112
Q ss_pred HHHHHHhcCCCc---cCCCc----h---------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 184 ARRILAGLGFTT---IYIPS----S---------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 184 ~~~~L~~lg~~~---L~~eP----n---------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
...+...|-..+ |+||| | .+.++-+..+.||++|+||++++..+||||++|+.|++.. .|+++
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA-EGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-cCCHH
Confidence 222211121111 88999 2 3444434456899999999999999999999999999876 56665
Q ss_pred HH
Q psy16366 248 LF 249 (568)
Q Consensus 248 ~~ 249 (568)
.-
T Consensus 236 eV 237 (250)
T COG0411 236 EV 237 (250)
T ss_pred HH
Confidence 43
No 419
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.8e-21 Score=187.90 Aligned_cols=170 Identities=21% Similarity=0.378 Sum_probs=108.4
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE---------------EEEecc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL---------------LYCEQE 124 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i---------------~~~~qe 124 (568)
|+++|+++.|+++.+|+++||+|.+|++++|+|||||||||||++|+|... |..+.+ .|+.|+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccC
Confidence 468999999988899999999999999999999999999999999999643 333333 333443
Q ss_pred ccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 125 VEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 125 ~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
..... .+..+.+.. . .............++.++.+.+. .....+.+++.+..++..-...
T Consensus 79 ~~~~~~~tv~e~l~~--------~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 79 RGLYPKMKVIDQLVY--------L---AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred CcCCcCCcHHHHHHH--------H---HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 22211 111111100 0 00000000000112222222221 1233567777776665443332
Q ss_pred ---cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 196 ---IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
++|||. ++.++++.+ +.|||+||||++++..+||++++|++|++..+
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 889992 555555443 67999999999999999999999999998753
No 420
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=2.2e-21 Score=203.72 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=117.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe----------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE---------------- 122 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~---------------- 122 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEE
Confidence 6899999999998899999999999999999999999999999999999743 3444444433
Q ss_pred -ccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 123 -QEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 123 -qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
|+....+. +..+.+.- .+ . .......+...+..++.+.+. .....++++++|.+|+..-.
T Consensus 82 ~Q~~~lfp~~tv~eNi~~------~~-~----~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAY------GL-K----NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred eCCcccCCCCcHHHHHHH------HH-H----hcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 33221111 11111100 00 0 000000001223334444332 12235778888877765433
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. |+|||. .|.++.++++.|+|+||||++++..+||+|++|++|++..++.+.+.|
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 32 889991 344555556899999999999999999999999999998765544444
No 421
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=3.5e-21 Score=198.69 Aligned_cols=176 Identities=19% Similarity=0.218 Sum_probs=112.6
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-----------------
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY----------------- 120 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~----------------- 120 (568)
.+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEE
Confidence 36899999999998899999999999999999999999999999999999643 33344433
Q ss_pred -EeccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 121 -CEQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 121 -~~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
+.|+..... .+..+.+.. ..............+..++.+.+. .+...+.++++|..|+..
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLV-----------FGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 333322111 111111100 000000000000112222232221 223457778877776654
Q ss_pred CCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. ++|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++... |+.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 220 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE-GRPH 220 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 3332 889992 44444443 378999999999999999999999999998754 5443
No 422
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.1e-21 Score=203.90 Aligned_cols=172 Identities=23% Similarity=0.252 Sum_probs=113.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-----------------EEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-----------------LYC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i-----------------~~~ 121 (568)
.|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+ .|+
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEE
Confidence 5899999999998899999999999999999999999999999999999743 333333 344
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+...... +..+.+... + ............+..++.+.+. .....+.++++|..|+..-.
T Consensus 81 ~Q~~~l~~~~tv~eni~~~------~-----~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFG------L-----KLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred eCCcccCCCCCHHHHHHhH------H-----hhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 443322211 111111000 0 0000000000122333333321 12345778888887766544
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
.. |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++..++
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 33 889991 344554555889999999999999999999999999998653
No 423
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.86 E-value=4.7e-21 Score=197.81 Aligned_cols=177 Identities=17% Similarity=0.192 Sum_probs=114.3
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE------------------E
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL------------------L 119 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i------------------~ 119 (568)
.+|+++|++++|++..+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+ .
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEE
Confidence 47999999999998899999999999999999999999999999999999643 333333 3
Q ss_pred EEeccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 120 YCEQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 120 ~~~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
|+.|+..... .+..+.+. + ...+......+...+..++.+.+. .+...+.+++.+..++..
T Consensus 84 ~v~q~~~~~~~~tv~e~l~--------~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLL--------V---FGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHH--------H---HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 4444432221 11111110 0 000000000000122233333221 223457777777666544
Q ss_pred CCCc----cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
-+.. ++|||. ++.++++++ +.|||++||+++++..+||+|++|++|+++.. |..+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~-g~~~~ 224 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHA 224 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 3332 889992 455555443 78999999999999999999999999999764 55443
No 424
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.86 E-value=1.7e-21 Score=191.16 Aligned_cols=178 Identities=18% Similarity=0.238 Sum_probs=108.0
Q ss_pred ceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----
Q psy16366 59 DIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---- 132 (568)
+|+++|++++|++ +++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++.......
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFL 78 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHH
Confidence 4789999999964 479999999999999999999999999999999999643 34455544443332111000
Q ss_pred ---HHHHHhccHHHH---HHHHHHHHHhhccCC---ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 133 ---VNIVLSADKNRV---KLLKECSKLERDESG---DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 133 ---~~~v~~~~~~~~---~l~~~~~~l~~~~~~---~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
+..+.+.. ... ...+........... ....++.++.+.+. .....+.++++|..++..-+..
T Consensus 79 ~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 79 RRHIGMVFQDH-RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred HHhceEEecCc-cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 00011100 000 000000000000000 01122233333221 1234567777777776544433
Q ss_pred ---cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 196 ---IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
|+|||. ++.++++++ +.|||+||||.+++..+||+|++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 889992 455555443 78999999999999999999999999875
No 425
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.1e-21 Score=182.80 Aligned_cols=184 Identities=20% Similarity=0.269 Sum_probs=118.3
Q ss_pred cceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch------
Q psy16366 58 VDIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD------ 130 (568)
Q Consensus 58 ~~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~------ 130 (568)
.+|+++|++.+| +++.+|+||||+|++||+++||||||||||||||+|+|.. .|..+.+...+-++.....
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--DPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc--CCCcceEEecccchhccchHHHHHH
Confidence 479999999999 7889999999999999999999999999999999999952 3444455443333322221
Q ss_pred -----------------hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH-------HhccCCCChHHHHHH
Q psy16366 131 -----------------SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE-------LKSIEADAAEPRARR 186 (568)
Q Consensus 131 -----------------~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~e-------l~~~~~~~~~~~~~~ 186 (568)
+++..|+.....+...+ ..+..+.+..+..+.-+.+++ +...+..++++++|.
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~---~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTW---RSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHH---HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 12222221110000000 000001111111111112222 122334566777776
Q ss_pred HHHhcCCCc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 187 ILAGLGFTT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 187 ~L~~lg~~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.++..-.+. |.||| +.|.++.++.|.|||+..|+.++...+|||||-|.+|++++ .|+.+
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf-Dg~~~ 233 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF-DGPAS 233 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE-eCChh
Confidence 666544433 88999 26777777889999999999999999999999999999986 45443
No 426
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.86 E-value=4e-21 Score=200.70 Aligned_cols=184 Identities=20% Similarity=0.236 Sum_probs=111.6
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---H
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---V 133 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~ 133 (568)
...|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++....... +
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccE
Confidence 347999999999999999999999999999999999999999999999999743 33444444333321110000 0
Q ss_pred HHHHhc-----cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cC
Q psy16366 134 NIVLSA-----DKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IY 197 (568)
Q Consensus 134 ~~v~~~-----~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~ 197 (568)
..+.+. .......+.....+..........+..++.+.+. .+...+.+++.+..++..-+.. ++
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiL 196 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000000 0000000000000000000001112223333221 2234577777776665433222 88
Q ss_pred CCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 198 IPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 198 ~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
|||. ++.+++++ .+.|||++||+++++..+||+|++|++|+++..
T Consensus 197 DEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 197 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9992 44444433 378999999999999999999999999999864
No 427
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.3e-21 Score=193.07 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc-cCCCceEEEEeccccCCchhH----H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA-IPSSIDLLYCEQEVEASDDSA----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~-ip~~~~i~~~~qe~~~~~~~~----~ 133 (568)
+|+++|+++.|+++++|+|+||+|.+|++|+|+||||||||||+++|+|...+ .|..+.+.+.++++...+... +
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 58899999999988999999999999999999999999999999999996432 244555554443332111000 0
Q ss_pred HHHHhccHHHH--HHHHHH---HHHhhc-cCCC-hHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHhcCCCc
Q psy16366 134 NIVLSADKNRV--KLLKEC---SKLERD-ESGD-NQLRLTEVYDELK-----------SIEADAAEPRARRILAGLGFTT 195 (568)
Q Consensus 134 ~~v~~~~~~~~--~l~~~~---~~l~~~-~~~~-~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~lg~~~ 195 (568)
..+.+.. ... ...+.. ...... .... ...++.++.+.+. .....+.+++.+..++..-+..
T Consensus 82 ~~~~q~~-~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 82 GMVFQQP-NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEecCC-ccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 0000000 000 000000 000000 0000 1112233333221 1233577777777766544433
Q ss_pred ----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 196 ----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 196 ----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
++|||. ++.+++.+ .+.|+|+||||++++..+||+|++|++|+++..+...+
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHH
Confidence 889992 45555543 27899999999999999999999999999987544333
No 428
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.86 E-value=7.6e-21 Score=198.45 Aligned_cols=186 Identities=19% Similarity=0.331 Sum_probs=115.1
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-- 132 (568)
+|+++|++++|++ .++|+|+||+|.+|+++||+||||||||||+|+|+|... |..+.+.+.++++.......
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHH
Confidence 4899999999952 479999999999999999999999999999999999743 44555555554443211110
Q ss_pred -----HHHHHhccHHHH---HHHHHHH-HHh--hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -----VNIVLSADKNRV---KLLKECS-KLE--RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -----~~~v~~~~~~~~---~l~~~~~-~l~--~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+++.. ... ...+... .+. .........+..++++.+. .....++++++|..++..-..
T Consensus 79 ~~r~~Ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 79 KARRQIGMIFQHF-NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHhcCEEEEECCc-cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 00111100 000 0000000 000 0000011223333333321 122357778887777654333
Q ss_pred c----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 195 T----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 195 ~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
. |+|||. .|.++.++.+.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~-g~~~~ 227 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-GTVSE 227 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 2 889991 34444444588999999999999999999999999999864 55443
No 429
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.1e-21 Score=190.24 Aligned_cols=175 Identities=22% Similarity=0.242 Sum_probs=110.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------EE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------------YC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~-----------------~~ 121 (568)
.|+++|++++|+++++|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+. |+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEE
Confidence 4889999999998899999999999999999999999999999999999743 2333333 33
Q ss_pred eccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhc-c--CC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 122 EQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERD-E--SG-DNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 122 ~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~-~--~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
.|+..... .+..+.+.... ..... . .. ....++.++.+.+. .....+.+++.+..++
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGL-----------RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhh-----------hhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 33322111 11111110000 00000 0 00 00111222222221 1233567777777665
Q ss_pred hcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
..-... ++|||. ++.+++ ++.+.|||+||||++++..+||+|++|++|+++.. |..+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 222 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV-GTPD 222 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe-cCHH
Confidence 543332 889991 344444 33478999999999999999999999999999754 4433
No 430
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=6.8e-21 Score=187.11 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=106.4
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-- 132 (568)
+|+++|++++|+++ ++|+++||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.++++.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHh
Confidence 47899999999876 89999999999999999999999999999999999643 33444443332221100000
Q ss_pred -HHHHHhcc-----HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 -VNIVLSAD-----KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 -~~~v~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+.. ......+............+...+..++.+.+. .....+.+++.+..|+..-...
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 00000000 000000000000000000000112222222221 1223466777766665433322
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++|||. ++.+++.+ .+.|+|+||||.+++..+||++++|++|++..
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 889992 44444433 37899999999999999999999999999874
No 431
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.7e-21 Score=186.71 Aligned_cols=169 Identities=25% Similarity=0.268 Sum_probs=106.4
Q ss_pred eEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE--------------EEE
Q psy16366 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL--------------LYC 121 (568)
Q Consensus 60 I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i--------------~~~ 121 (568)
|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+ .|+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~i~~v 78 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTGPGPDRGYV 78 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccccCcEEEE
Confidence 468999999987 789999999999999999999999999999999999743 333333 333
Q ss_pred eccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+..... .+..+.+. +.. ............+..++.+.+ ......+.+++++..++..-.
T Consensus 79 ~q~~~~~~~~tv~e~l~--------~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 79 FQQDALLPWLTVLDNVA--------LGL---ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA 147 (220)
T ss_pred ecccccccCCCHHHHHH--------HHH---HHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 33322111 11111110 000 000000000011222222222 122345777777776654433
Q ss_pred Cc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEc--CCeeeE
Q psy16366 194 TT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLD--MKKLFY 241 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~--~g~l~~ 241 (568)
.. ++|||. ++.+++ +..+.|||+||||++++..+||+|++|+ +|+++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 22 889992 444444 3347899999999999999999999999 799864
No 432
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=5.7e-21 Score=185.99 Aligned_cols=177 Identities=24% Similarity=0.335 Sum_probs=106.2
Q ss_pred EeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc-hhHHHHHHhc
Q psy16366 62 VENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD-DSAVNIVLSA 139 (568)
Q Consensus 62 i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~-~~~~~~v~~~ 139 (568)
++|++++|++ +.+|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+.++.... ...+..+.+.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecC
Confidence 6799999987 889999999999999999999999999999999999643 33444443332221000 0000000010
Q ss_pred cHHHHHHHHHHHHHhh-c-cCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch-----
Q psy16366 140 DKNRVKLLKECSKLER-D-ESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS----- 201 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~-~-~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn----- 201 (568)
.........-.+.+.. . .......+..++.+.+. .....+.+++++..++..-... ++|||.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 0000000000000000 0 00111123344444332 1233577777777766543322 889992
Q ss_pred ----HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeee
Q psy16366 202 ----RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240 (568)
Q Consensus 202 ----~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~ 240 (568)
++.++++.+ +.|+|+||||++++..+||+|++|++|+++
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 455555433 789999999999999999999999999874
No 433
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.9e-21 Score=200.64 Aligned_cols=172 Identities=20% Similarity=0.209 Sum_probs=114.0
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEE----------------
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC---------------- 121 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~---------------- 121 (568)
+|+++|++++| +++.+|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.+.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEE
Confidence 58999999999 77899999999999999999999999999999999999743 334444443
Q ss_pred -eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcC
Q psy16366 122 -EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 122 -~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg 192 (568)
.|+...... +..+.+... + . ...........++.++.+.+. .....++++++|.+|+..-
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~------~-~----~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYG------L-K----IRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhH------H-h----hcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH
Confidence 333222211 111111000 0 0 000000000122333333221 2234578888888876654
Q ss_pred CCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 193 FTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 193 ~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
... |+|||. .|.++.++.+.|+|+||||++++..+||+|++|++|++..++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 433 889991 444455556899999999999999999999999999998654
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=4.9e-22 Score=192.82 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=104.8
Q ss_pred eeeeeeEEEeCCC-EEEEECCCCChHHHHHHHHh--------cCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHH
Q psy16366 351 LLEKVNFGLDMES-RVALVGPNGIGKSTFLNLLK--------GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421 (568)
Q Consensus 351 il~~vs~~i~~Ge-~~~ivG~NGsGKSTLlk~l~--------G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~ 421 (568)
-+-++||+|.+|+ +++|+||||||||||||+|+ |...|.... ..++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~------~~~~~~~~~~~------------ 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG------SSLPVFENIFA------------ 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc------ccCcCccEEEE------------
Confidence 3567899999996 69999999999999999998 555453221 22344444321
Q ss_pred HHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HH---H
Q psy16366 422 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AI---K 497 (568)
Q Consensus 422 l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l---~ 497 (568)
.++...... ...+++|+|++|++.+++++ .+|+++|+||||++||+.....+.. .+ .
T Consensus 78 -----------------~lg~~~~l~-~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~ 138 (200)
T cd03280 78 -----------------DIGDEQSIE-QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL 138 (200)
T ss_pred -----------------ecCchhhhh-cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 111111111 24578999999999999884 8999999999999999998776643 33 3
Q ss_pred hcCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 498 NYQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 498 ~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
+.+.++|++||+.+ +..+|++++.|++|++.
T Consensus 139 ~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 139 ERGALVIATTHYGE-LKAYAYKREGVENASME 169 (200)
T ss_pred hcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence 44679999999965 45788999999999885
No 435
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=1.1e-20 Score=194.68 Aligned_cols=188 Identities=18% Similarity=0.259 Sum_probs=114.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~ 135 (568)
.|+++|++++|+++.+|+|+||+|++|+++||+||||||||||+++|+|... |..+.+.+.+.++....... +..
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEE
Confidence 4889999999998899999999999999999999999999999999999743 33444444333221110000 000
Q ss_pred HHhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 136 VLSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 136 v~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+.+... .....+.....+..........++.++.+.+. .....+.+++.+..++..-+.. ++||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000000 00000000000000000000122333333321 1233466677666655433322 8899
Q ss_pred ch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 SS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 Pn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|. ++.++++.+ +.|||++||+++++..+||||++|++|++.. .|+.+.+
T Consensus 160 Pt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 219 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKLDEL 219 (301)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 92 555555554 5899999999999999999999999999984 5766654
No 436
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.2e-21 Score=190.81 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=109.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE--------------EEecc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL--------------YCEQE 124 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~--------------~~~qe 124 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+. |+.|+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCCcEEEEeCC
Confidence 4789999999988899999999999999999999999999999999999743 3333333 33333
Q ss_pred ccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 125 VEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 125 ~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
..... .+..+.+... .............++.++.+.+. .....+.+++.+..|+..-+..
T Consensus 79 ~~~~~~~tv~e~l~~~-----------~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFG-----------LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhH-----------HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 22111 1111111000 00000000000112223333221 1233577777777665543332
Q ss_pred ---cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEc--CCeeeEE
Q psy16366 196 ---IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLD--MKKLFYY 242 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~--~g~l~~~ 242 (568)
++|||. ++.+++++ .+.|||+||||++++..+||+|++|+ +|+++..
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 889992 55555544 36899999999999999999999998 5888653
No 437
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=9e-21 Score=191.23 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=113.8
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecc-----ccCCchhH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-----VEASDDSA 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe-----~~~~~~~~ 132 (568)
.+|+++|++++|+++++|+++||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+++ +.......
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHH
Confidence 36999999999988899999999999999999999999999999999999643 344555544433 21111100
Q ss_pred --------HHHHHhccHH-H---HHHHHHH-HHHhhcc--C-CChHHHHHHHHHHHh--------ccCCCChHHHHHHHH
Q psy16366 133 --------VNIVLSADKN-R---VKLLKEC-SKLERDE--S-GDNQLRLTEVYDELK--------SIEADAAEPRARRIL 188 (568)
Q Consensus 133 --------~~~v~~~~~~-~---~~l~~~~-~~l~~~~--~-~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L 188 (568)
+..+.+.... . ....+.. ..+.... . .....+..++.+.+. .....+.+++.+..+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 0001111000 0 0000000 0000000 0 000112222222221 123356777777776
Q ss_pred HhcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 189 AGLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 189 ~~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
+..-+.. ++|||. ++.+++ +.++.|||+||||++++..+||+|++|++|+++.. |..+.
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~-~~~~~ 238 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES-GLTDQ 238 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHH
Confidence 6543332 889992 444443 44578999999999999999999999999999754 44443
No 438
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.86 E-value=1e-20 Score=198.68 Aligned_cols=173 Identities=19% Similarity=0.224 Sum_probs=114.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc-------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV------------- 125 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~------------- 125 (568)
.|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+.++++
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEE
Confidence 4889999999998899999999999999999999999999999999999643 3344444433332
Q ss_pred ----cCCch-hHHHHHHhccHHHHHHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 126 ----EASDD-SAVNIVLSADKNRVKLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 126 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
...+. +..+.+.... .... ..... ...+..++++.+. .....+.++++|..|+
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGL-----------TVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhh-----------hhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 21111 1111110000 0000 00000 0123333333321 1223577788887776
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
..-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|+++.++.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 544333 889991 4555555568899999999999999999999999999987543
No 439
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.3e-21 Score=189.33 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=112.3
Q ss_pred eEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch---hH---
Q psy16366 60 IKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD---SA--- 132 (568)
Q Consensus 60 I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~---~~--- 132 (568)
|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++..... ..
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999987 789999999999999999999999999999999999643 344455444433321110 00
Q ss_pred -HHHHHhccHHH--HHHHHHHHH-----------HhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 133 -VNIVLSADKNR--VKLLKECSK-----------LERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 133 -~~~v~~~~~~~--~~l~~~~~~-----------l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
+..+.+..... ....+.... +..........+..++.+.+. .....+.+++.+..|+..
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 00011100000 000000000 000000001122233333321 123356777777776554
Q ss_pred CCCc----cCCCch---------H----HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 192 GFTT----IYIPSS---------R----VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 192 g~~~----L~~ePn---------~----L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
-... ++|||. + |.++.++.+.|||+||||++++..+||++++|++|+++. .|..+.+
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAEL 232 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHh
Confidence 3332 889992 3 444333347899999999999999999999999999875 4555544
No 440
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=9.1e-21 Score=185.70 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=107.6
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
+|+++|++++| +++.+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHH
Confidence 47899999999 46789999999999999999999999999999999999743 34455554443332111000
Q ss_pred --HHHHHhccHHHH---HHHHHHHHHhhcc--CC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 133 --VNIVLSADKNRV---KLLKECSKLERDE--SG-DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 --~~~v~~~~~~~~---~l~~~~~~l~~~~--~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
+..+.+. .... ...+......... .. ....++.++.+.+. .....+.+++.+..++..-+..
T Consensus 79 ~~i~~~~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 79 RRIGVVFQD-FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred hheEEEecC-hhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 0000110 0000 0000000000000 00 01122333333321 1234567777777766543332
Q ss_pred --cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCe
Q psy16366 196 --IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKK 238 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~ 238 (568)
++|||. ++.++++. .+.|+|+||||++++..+||+|++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 889991 45554443 37899999999999999999999999874
No 441
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-20 Score=196.67 Aligned_cols=182 Identities=19% Similarity=0.330 Sum_probs=110.9
Q ss_pred ceEEeeeEEEeC----CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-
Q psy16366 59 DIKVENFSLSAK----GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV- 133 (568)
Q Consensus 59 ~I~i~nls~~~~----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~- 133 (568)
+|+++|++++|+ ++++|+|+||+|.+|+++||+||||||||||+|+|+|... |..+.+.+.++++...+....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHH
Confidence 488999999997 3689999999999999999999999999999999999743 344555544443321111000
Q ss_pred ------HHHHhccHHH--HHHHHHHH---HHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc
Q psy16366 134 ------NIVLSADKNR--VKLLKECS---KLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT 195 (568)
Q Consensus 134 ------~~v~~~~~~~--~~l~~~~~---~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~ 195 (568)
..+.+...-. ....+... ............+..++.+.+. .....+.++++|..++..-...
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 0000000000 00000000 0000000001122333333321 1233577788777766543332
Q ss_pred ----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 196 ----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 196 ----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
++|||. ++.+++ ++.+.|||+||||++++..+||+|++|++|+++..
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 889992 344444 33478999999999999999999999999999864
No 442
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=1.1e-20 Score=185.72 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=105.2
Q ss_pred eEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---
Q psy16366 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA--- 132 (568)
Q Consensus 60 I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~--- 132 (568)
|+++|++++|++ +++|+++||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHH
Confidence 468999999976 789999999999999999999999999999999999643 34445544443332111000
Q ss_pred -----HHHHHhccHHHHH--HHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -----VNIVLSADKNRVK--LLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -----~~~v~~~~~~~~~--l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+.. .... ...+.-.+.. ..... ...++.++.+.+. .....+.+++.+..|+..-+.
T Consensus 79 ~~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 79 FRRRHIGFVFQSF-NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred HHhhcEEEEeecc-ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 00000000 0000 0000000000 00000 1122233333321 122356777777776654433
Q ss_pred c----cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 195 T----IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
. |+|||. ++.+++++ .+.|||+||||.+++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 3 889991 44444433 4789999999999997 9999999999874
No 443
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=5.6e-21 Score=190.88 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=113.0
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
+|.++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHH
Confidence 478999999998 7789999999999999999999999999999999999643 34455544433322111000
Q ss_pred --HHHHHhccHHHHHHHHHHHHHhh-c-------------cCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 133 --VNIVLSADKNRVKLLKECSKLER-D-------------ESGDNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 133 --~~~v~~~~~~~~~l~~~~~~l~~-~-------------~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
+..+.+.. ....-....+.+.. . .......+..++.+.+. .....+.+++.+..++
T Consensus 79 ~~i~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 79 RRIGMIFQHY-NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred hheEEEcCCC-cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 00011100 00000000000000 0 00001122333333321 1234567777777765
Q ss_pred hcCCCc----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
..-+.. ++|||. ++.++++ +.+.|||+||||.+++..+||++++|++|+++. .|+.+.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~ 232 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAPSE 232 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCHHH
Confidence 543332 889992 4444443 336899999999999999999999999999974 455544
No 444
>KOG0064|consensus
Probab=99.86 E-value=2.7e-21 Score=201.88 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=149.6
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC----
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH---- 411 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~---- 411 (568)
|.++||-+--|.+..++..++|+|.+|-.+.|+||||||||+|+|+|.|+-|...|.....+..+|-|+||.|...
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtl 561 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTL 561 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcc
Confidence 6788888887777889999999999999999999999999999999999999999999888888899999998521
Q ss_pred ---CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC--------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 412 ---LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI--------PIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 412 ---l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~--------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+.-..+..++- ..+...++...+|..+.|+....+. =-..||||||||+++||++..+|..-+|||-
T Consensus 562 RDQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 562 RDQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred cceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 11122333332 2356667777777666554322110 0146999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 481 TNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
||+..++....+.++.+.++.+.|-|||...+.... +.++-+
T Consensus 640 TsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h-~~ll~~ 681 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH-THLLEF 681 (728)
T ss_pred hcccccchHHHHHHHHHhcCceEEEeecCccHHHHH-HHHHhc
Confidence 999999999999999999999999999999998643 444444
No 445
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.86 E-value=1.1e-20 Score=199.59 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=117.0
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNI 135 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~ 135 (568)
..|+++|++++|+++.+|+++||+|.+||+++|+|||||||||||++|+|... |..+.+.+.+.++..... ..+..
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEE
Confidence 35899999999998899999999999999999999999999999999999643 334445444433321100 00011
Q ss_pred HHhccHHHH---HHHHHHH-HHh--hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 136 VLSADKNRV---KLLKECS-KLE--RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 136 v~~~~~~~~---~l~~~~~-~l~--~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
+++... .+ ...+... .+. .........++.++.+.+. .....++++++|.+|+..-... |+|
T Consensus 91 vfQ~~~-lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD 169 (375)
T PRK09452 91 VFQSYA-LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169 (375)
T ss_pred EecCcc-cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111000 00 0000000 000 0000000122333333221 1233577888888876644333 889
Q ss_pred Cch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 199 PSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 199 ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
||. .|.++.++.+.|+|+||||++++..+||+|++|++|++...+.+.+.|
T Consensus 170 EP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 170 ESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 991 344555556899999999999999999999999999998764433333
No 446
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.85 E-value=5.7e-21 Score=189.98 Aligned_cols=184 Identities=18% Similarity=0.298 Sum_probs=110.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++++|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++....... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999988889999999999999999999999999999999999643 33445544433332111100 00
Q ss_pred HHHhccHHH--HHHHHHHHHHhh-ccC-------------CChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 135 IVLSADKNR--VKLLKECSKLER-DES-------------GDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~l~~-~~~-------------~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
.+.+..... ....+.. .+.. ... .....+..++.+.+. .....+.+++.+..++..
T Consensus 79 ~v~q~~~l~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 79 RTFQIPRLFPELTVLENV-MVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EEecccccccCCCHHHHH-HHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 001100000 0000000 0000 000 000112333333321 122346677777666544
Q ss_pred CCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. ++|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++.. .|+.+
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 228 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPD 228 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHH
Confidence 3332 889992 44444433 46899999999999999999999999999975 34443
No 447
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-20 Score=194.34 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=112.6
Q ss_pred ceEEeeeEEEeCCc-----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC------
Q psy16366 59 DIKVENFSLSAKGV-----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA------ 127 (568)
Q Consensus 59 ~I~i~nls~~~~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~------ 127 (568)
.|+++|++++|++. ++|+|+||+|.+||+++|+||||||||||+++|+|... |..+.+.+.+..+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccc
Confidence 48999999999753 59999999999999999999999999999999999743 334455443222100
Q ss_pred ----------C--------chhH----HHHHHhccH-HHHHHHHHHHHHhh-c-cCC-C---hHHHHHHHHHHHh-----
Q psy16366 128 ----------S--------DDSA----VNIVLSADK-NRVKLLKECSKLER-D-ESG-D---NQLRLTEVYDELK----- 173 (568)
Q Consensus 128 ----------~--------~~~~----~~~v~~~~~-~~~~l~~~~~~l~~-~-~~~-~---~~~~l~~v~~el~----- 173 (568)
. .... +..+++... .... ....+.+.. . ..+ . ...+..++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 0 0000 111111100 0000 000000100 0 000 0 1122233333221
Q ss_pred ---ccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEE
Q psy16366 174 ---SIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHL 234 (568)
Q Consensus 174 ---~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L 234 (568)
.....+.+++.+..++..-... |+|||. ++.++++ +.+.|||+||||++++..+||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 1223466777777766554332 889992 3333333 34789999999999999999999999
Q ss_pred cCCeeeEEcCChhHH
Q psy16366 235 DMKKLFYYKGNFTLF 249 (568)
Q Consensus 235 ~~g~l~~~~g~y~~~ 249 (568)
++|+++..+.+++.+
T Consensus 239 ~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 239 KDGKIIKDGDTYDIL 253 (305)
T ss_pred ECCEEEEECCHHHHh
Confidence 999998765544444
No 448
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.85 E-value=1.5e-20 Score=190.73 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=112.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA------ 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~------ 132 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++.......
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhh
Confidence 6899999999998899999999999999999999999999999999999743 33444444333321110000
Q ss_pred -HHHHHhccHHH--HHHHHHHHH-HhhccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 133 -VNIVLSADKNR--VKLLKECSK-LERDESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 133 -~~~v~~~~~~~--~~l~~~~~~-l~~~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
+..+.+..... ..+.+.... +........ ..+..++++.+. .....+.+++.+..++..-+..
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00000000000 000000000 000000000 112222333221 1233567777777665543332
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. +|.++.+..+.|||+||||++++..+||+|++|++|++.. .|..+.+
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 231 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA-HGSAQAL 231 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE-eCCHHHH
Confidence 889991 3333333347899999999999999999999999999975 4555443
No 449
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2.3e-20 Score=191.27 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=120.2
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HH
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~ 134 (568)
.|.++|++.+|+ ++.+|+|+||+|.+|+.+||+||||||||||+|+|+|... |..+.+.+.++++....... +.
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheE
Confidence 578899999999 6999999999999999999999999999999999999743 45556655555443221110 01
Q ss_pred HHHhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 135 IVLSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 135 ~v~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+.+. ...+.+.-...+..........++.++.+.+.. +...+.+++.|..++..-+.. ++|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 1111100 000111111111111111123456666665432 233566777776554332222 889
Q ss_pred Cch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 199 PSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 199 ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
||. +|.++.++.+.|||++||.++.+..+||+|++|++|++++++ ..+.
T Consensus 162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g-~~~~ 223 (293)
T COG1131 162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG-TPEE 223 (293)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC-CHHH
Confidence 992 455555544479999999999999999999999999999865 4443
No 450
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.7e-21 Score=198.24 Aligned_cols=186 Identities=13% Similarity=0.167 Sum_probs=114.2
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc--cCCCceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA--IPSSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~--ip~~~~i~~~~qe~~~~~~~~ 132 (568)
.|+++|++++|++ ..+|+|+||+|.+||++||||+||||||||+++|+|...+ .|..+.+.+.++++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 4699999999999999999999999999999999996422 123456666555543221111
Q ss_pred --------HHHHHhccHHHH----HHHHHHHH-HhhccCCC---hHHHHHHHHHHHh----------ccCCCChHHHHHH
Q psy16366 133 --------VNIVLSADKNRV----KLLKECSK-LERDESGD---NQLRLTEVYDELK----------SIEADAAEPRARR 186 (568)
Q Consensus 133 --------~~~v~~~~~~~~----~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~----------~~~~~~~~~~~~~ 186 (568)
+..+++...... ........ +....... ...+..++++.+. .....++++++|.
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 111111110000 00000000 00000000 1122233333321 1223467777777
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
.++..-... ++|||. +|.++.++.+.|+|+||||++++..+||+|++|++|+|+..+.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 665432222 889992 4555545568899999999999999999999999999987543
No 451
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=7.7e-21 Score=178.44 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=102.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~ 139 (568)
|+++|++++|+++++|+++||+|.+||+++|+||||||||||+++|+|... |..+.+.+.++++...+.. .
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~--~----- 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR--D----- 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH--H-----
Confidence 578999999998899999999999999999999999999999999999743 4455665544443211100 0
Q ss_pred cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHH
Q psy16366 140 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHEI 206 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~ 206 (568)
... ...... ...+.+++.+..++..-... ++|||. ++.++
T Consensus 72 ------~~~--~~i~~~-------------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 72 ------ARR--AGIAMV-------------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV 124 (163)
T ss_pred ------HHh--cCeEEE-------------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 000 000000 00456666666555433322 889992 34444
Q ss_pred Hhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 207 MRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 207 l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 125 l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 125 IRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 4332 7899999999999999999999999999863
No 452
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.6e-21 Score=193.17 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=114.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hH----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SA---- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~---- 132 (568)
+|+++|++++|+++.+|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++..... ..
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhh
Confidence 4789999999988889999999999999999999999999999999999643 344555544444321110 00
Q ss_pred HHHHHhccHHH-H-HHHHHHHHHh-hccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNR-V-KLLKECSKLE-RDESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~-~-~l~~~~~~l~-~~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+..... . ....+.-.+. ....... ..++.++.+.+. .....+.+++.+..|+..-+..
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111110000 0 0000000000 0000010 112233333321 1234577777777766543332
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. ++.+++.+ .+.|||+||||.+++..+||++++|++|+++.. |..+.
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 222 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH-GAPGE 222 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 889992 44444433 368999999999999999999999999999864 44443
No 453
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.85 E-value=1.3e-20 Score=189.12 Aligned_cols=188 Identities=20% Similarity=0.291 Sum_probs=112.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc--------h
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--------D 130 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~--------~ 130 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHH
Confidence 5899999999988899999999999999999999999999999999999643 33444444333321100 0
Q ss_pred hH----HHHHHhccHHH--HHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 131 SA----VNIVLSADKNR--VKLLKECSK-LERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 131 ~~----~~~v~~~~~~~--~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.. +..+.+..... ....+.... ........ ...+..++.+.+. .....+.+++.+..|+..-.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 00 00000000000 000000000 00000000 0112223333221 12234666777766654433
Q ss_pred Cc----cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. ++|||. ++.+++. +.+.|||+||||.+++..+||+|++|++|+++. .|+.+.+
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 231 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKAL 231 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 32 889992 4444443 237899999999999999999999999999975 4555543
No 454
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=9.6e-21 Score=188.03 Aligned_cols=185 Identities=15% Similarity=0.252 Sum_probs=111.6
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-- 132 (568)
+|+++|++++|+++ ++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++.......
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHH
Confidence 47899999999876 89999999999999999999999999999999999743 33445554444332111000
Q ss_pred -----HHHHHhccHHHH---HHHHHHHHHhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -----VNIVLSADKNRV---KLLKECSKLERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -----~~~v~~~~~~~~---~l~~~~~~l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+.. ... ...+............ ......++.+.+. .....+.+++.+..++..-+.
T Consensus 79 ~~~~~i~~~~q~~-~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 79 KARRRIGMIFQHF-NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHhheEEEccCc-ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 00000100 000 0000000000000000 0112223333321 122346677777666543332
Q ss_pred c----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 195 T----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
. ++|||. ++.+++. +.+.|||+||||.+++..+||++++|++|+++.. |+.+
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 226 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE-GTVE 226 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHH
Confidence 2 889992 4444443 3478999999999999999999999999999854 4443
No 455
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-20 Score=198.77 Aligned_cols=180 Identities=19% Similarity=0.225 Sum_probs=118.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL----------------- 119 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~----------------- 119 (568)
..+|+++|++++|++..+|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 346999999999988889999999999999999999999999999999999743 3333333
Q ss_pred EEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 120 YCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 120 ~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
|+.|+...... +..+.+... + . .......+...++.++.+.+. .....+.++++|.+|+..
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~------l-~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFG------L-K----QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHH------H-H----HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 34443322211 111111100 0 0 000000001123333333322 122357788888877654
Q ss_pred CCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 192 GFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 192 g~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
-... |+|||. .|.+++++.+.|+|+||||++++..+||+|++|++|++...+.+.+.|
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 4333 889991 344566667899999999999999999999999999998764433333
No 456
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.9e-20 Score=183.00 Aligned_cols=179 Identities=23% Similarity=0.320 Sum_probs=107.4
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNIV 136 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~v 136 (568)
|+++|+++.|+++++|+|+||+|.+| +++|+||||||||||+++|+|... |..+.+.+.++++....... +..+
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEe
Confidence 57899999998889999999999999 999999999999999999999643 33444444333321110000 0000
Q ss_pred HhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 137 LSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 137 ~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+... .....+............+....+.++.+.+ ......+.+++.+..++..-... |+|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00000 0000000000000000000011222222221 11233567777776665543333 88999
Q ss_pred h---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 201 S---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 201 n---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
. ++.++++++ +.|+|+||||++++..+||++++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 1 566666544 5899999999999999999999999999864
No 457
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=1.2e-20 Score=190.67 Aligned_cols=189 Identities=19% Similarity=0.267 Sum_probs=115.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC-CCceEEEEeccccCCc-----hhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-SSIDLLYCEQEVEASD-----DSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip-~~~~i~~~~qe~~~~~-----~~~ 132 (568)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|...|.+ ..+.+.+.+.++.... ...
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 6899999999998999999999999999999999999999999999999754432 1245544443332110 000
Q ss_pred ----HHHHHhccHHH--HHHHHHHHHHhh------------ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHH
Q psy16366 133 ----VNIVLSADKNR--VKLLKECSKLER------------DESGDNQLRLTEVYDELK-------SIEADAAEPRARRI 187 (568)
Q Consensus 133 ----~~~v~~~~~~~--~~l~~~~~~l~~------------~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~ 187 (568)
+..+.+..... ....+.. .... ........+..++.+.+. .....+.+++.+..
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHhheEEEccccccccCCcHHHHH-HhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 00011110000 0000000 0000 000001112233333221 22335677777766
Q ss_pred HHhcCCCc----cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+..-... |+|||. ++.++++. .+.|||+||||++++..+||+|++|++|++. +.|+++.+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 240 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQF 240 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHh
Confidence 65432222 889992 44444443 3689999999999999999999999999996 45777665
No 458
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.85 E-value=1.5e-20 Score=189.45 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=114.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC----------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS---------- 128 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~---------- 128 (568)
.|+++|+++.|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.+..+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccc
Confidence 4899999999998999999999999999999999999999999999999743 3344554443332110
Q ss_pred c---hhH----HHHHHhccHHH--HHHHHHHHH-HhhccCC---ChHHHHHHHHHHHh--------ccCCCChHHHHHHH
Q psy16366 129 D---DSA----VNIVLSADKNR--VKLLKECSK-LERDESG---DNQLRLTEVYDELK--------SIEADAAEPRARRI 187 (568)
Q Consensus 129 ~---~~~----~~~v~~~~~~~--~~l~~~~~~-l~~~~~~---~~~~~l~~v~~el~--------~~~~~~~~~~~~~~ 187 (568)
. ... +..+.+...-. ....+.... ....... ....+..++.+.+. .....+.+++.+..
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0 000 00000000000 000000000 0000000 01223333443331 12234666777766
Q ss_pred HHhcCCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+..-... ++|||. +|.+++++ .+.|||+||||++++..+||+|++|++|+++. .|+++.+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 65543332 889992 55555443 37899999999999999999999999999985 4666654
No 459
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.3e-20 Score=178.52 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=102.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~ 139 (568)
++++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~-~~~------ 71 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEP-EEV------ 71 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccch-Hhh------
Confidence 468999999988889999999999999999999999999999999999643 34555554443321100 000
Q ss_pred cHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHH
Q psy16366 140 DKNRVKLLKECSKLER-DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHE 205 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~ 205 (568)
. ..... .+.... ..-..+.+.+. .+.+++.+..++..-... |+|||. ++.+
T Consensus 72 --------~--~~i~~~~q~~~~-~~~~tv~~~~~----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 72 --------K--RRIGYLPEEPSL-YENLTVRENLK----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred --------h--ccEEEEecCCcc-ccCCcHHHHhh----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 0 00000 111100 00001222221 567777776655433322 889992 4444
Q ss_pred HHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 206 IMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 206 ~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
+++++ +.|+|+||||.+++..+||++++|++|++
T Consensus 137 ~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 44332 68999999999999999999999999864
No 460
>KOG0065|consensus
Probab=99.85 E-value=1.3e-21 Score=223.85 Aligned_cols=187 Identities=26% Similarity=0.342 Sum_probs=147.2
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--CCccEEEECC--------CeeEEEEecCCCCCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--PNKGELRKSP--------RLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~--------~~~i~~~~q~~~~~l~~~~~ 417 (568)
.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.+++ ++.+||+.|+.. ++ +..|
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~Di-H~-~~~T 880 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDI-HS-PELT 880 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccc-cC-cccc
Confidence 4579999999999999999999999999999999999742 1245555543 357899999864 33 7889
Q ss_pred HHHHHHHh------cCCCH----HHHHHHHHhCCCCCccccCCCC----CCCHhHHHHHHHHHHHccCC-CeEEEeCCCC
Q psy16366 418 PCEYLMKL------FNLPY----EKSRRQLGMFGLPSYAHTIPIR----DLSGGQKARVALAELTLNNP-DILILDEPTN 482 (568)
Q Consensus 418 ~~e~l~~~------~~~~~----~~~~~~L~~~~l~~~~~~~~~~----~LSgGqkqRv~lA~al~~~p-~lLlLDEPt~ 482 (568)
+.|-|... ...+. +.++++++.++|.+..+. -++ -||..||+|+.||--|+.+| -||+||||||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da-iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS 959 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA-LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh-hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence 99866421 12222 346778888998865543 344 49999999999999999999 8999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHH-HHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERL-IRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
|||..+...+++++++. |.|||++-|.++- +.+.-|++++|+.|+-..|.|+..+
T Consensus 960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999888888765 6799999998743 3445689999987766667776544
No 461
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.2e-21 Score=194.83 Aligned_cols=186 Identities=20% Similarity=0.287 Sum_probs=112.3
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--h
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--S 131 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~ 131 (568)
.|+++|++++|++ +++|+|+||+|.+||++||+||||||||||+++|+|... |..+.+.+.+.++..... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHH
Confidence 4889999999964 479999999999999999999999999999999999643 344455444433321100 0
Q ss_pred H----HHHHHhccH-HHH--HHHHHHHHHhhccCC-C---hHHHHHHHHHHHhc---------cCCCChHHHHHHHHHhc
Q psy16366 132 A----VNIVLSADK-NRV--KLLKECSKLERDESG-D---NQLRLTEVYDELKS---------IEADAAEPRARRILAGL 191 (568)
Q Consensus 132 ~----~~~v~~~~~-~~~--~l~~~~~~l~~~~~~-~---~~~~l~~v~~el~~---------~~~~~~~~~~~~~L~~l 191 (568)
. +..+.+... ... ...+... +.....+ . ...+..++.+.+.. ....+.+++.|..++..
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIA-FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHH-hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 0 011111100 000 0000000 0000000 0 11223333333211 22346677777766554
Q ss_pred CCCc----cCCCch---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 192 GFTT----IYIPSS---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 192 g~~~----L~~ePn---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
-... ++|||. ++ .++.++.+.|||+||||++++..+||+|++|++|++..+ |..+.
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~-g~~~~ 231 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ-GTPRE 231 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 3332 889992 44 444344478999999999999999999999999999865 44433
No 462
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.85 E-value=1.9e-20 Score=182.60 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=106.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc--hhHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--DSAVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~--~~~~~~v~ 137 (568)
|+++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.... ...+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEec
Confidence 478999999988899999999999999999999999999999999999743 33444444333221000 00000000
Q ss_pred hccHHH--HHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch---
Q psy16366 138 SADKNR--VKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS--- 201 (568)
Q Consensus 138 ~~~~~~--~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn--- 201 (568)
+...-. ....+.. .+..........+..++.+.+. .....+.+++.+..|+..-... ++|||.
T Consensus 79 q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 79 EAPGFYPNLTARENL-RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred CCCccCccCcHHHHH-HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 000000 0000000 0000000001112222222221 1233567777776665443332 889992
Q ss_pred ------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 202 ------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 202 ------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++.+++.+ .+.|+|+||||.+++..+||++++|++|+++.
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 34444433 47899999999999999999999999999864
No 463
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=2e-20 Score=186.66 Aligned_cols=187 Identities=20% Similarity=0.277 Sum_probs=112.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh--H----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS--A---- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~--~---- 132 (568)
+|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.+..+...... .
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhc
Confidence 4789999999988899999999999999999999999999999999999643 3344444433332210000 0
Q ss_pred HHHHHhccHHH--HHHHHHHHHHh--hccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 133 VNIVLSADKNR--VKLLKECSKLE--RDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 133 ~~~v~~~~~~~--~~l~~~~~~l~--~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
+..+.+..... ....+.. .+. ...... ...+..++.+.+. .....+.+++.+..++..-...
T Consensus 79 i~~~~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENV-MFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred eEEEecccccCCCCcHHHHH-HhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 00000000000 0000000 000 000000 0112223333221 1223466677766665443322
Q ss_pred -cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 -IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 -L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. ++.++++. .+.|+|+||||++++..+||+|++|++|++++ .|+++.+
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 223 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVL 223 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHH
Confidence 889992 44444433 37899999999999999999999999999985 4666554
No 464
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=189.08 Aligned_cols=192 Identities=15% Similarity=0.219 Sum_probs=115.3
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCC--ch
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEAS--DD 130 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~--~~ 130 (568)
.+..|+++|++++|+++.+|+++||+|.+|++++|+|||||||||||++|+|...+. |..+.+.+.++++... ..
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 456799999999998888999999999999999999999999999999999963211 2345554444333210 00
Q ss_pred hH----HHHHHhccHH-HHHHHHHHH---HHhhccCC-ChHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHh
Q psy16366 131 SA----VNIVLSADKN-RVKLLKECS---KLERDESG-DNQLRLTEVYDELK-----------SIEADAAEPRARRILAG 190 (568)
Q Consensus 131 ~~----~~~v~~~~~~-~~~l~~~~~---~l~~~~~~-~~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~ 190 (568)
.. +..+.+.... .....+... ........ ....++.++.+.+. .....+.+++.+..++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 00 0000000000 000000000 00000000 00112222222211 12345777887777665
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-... ++|||. ++.++++++ +.|||+||||.+++..+||+|++|++|++... |..+.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 234 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV-GPTEQ 234 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 43332 889992 555555543 57999999999999999999999999999764 44443
No 465
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=175.88 Aligned_cols=179 Identities=22% Similarity=0.284 Sum_probs=130.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHh
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 138 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~ 138 (568)
||+++|+|.+|+++.+++++|++|.+|..++||||||+||||||.+++.... +..+.+.+.++++...+...+..
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk--- 75 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAK--- 75 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHH---
Confidence 5899999999999999999999999999999999999999999999997522 34567777788877655443322
Q ss_pred ccHHHHHHHHHHHH---------Hhh---ccC--C----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 139 ADKNRVKLLKECSK---------LER---DES--G----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 139 ~~~~~~~l~~~~~~---------l~~---~~~--~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
...++++... |.. ++. + ++...+.+..+.+. .+...++++|+|...+.+-.
T Consensus 76 ----~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 76 ----KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred ----HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 2223333322 211 111 1 12233344444332 23446788899988877654
Q ss_pred Cc----cCCCc-h------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPS-S------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~eP-n------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
+. |+||| | .|.++..++++|+|+|=||..|..-++|+|+-|.+|+++.. |..+
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~-G~~~ 221 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ-GSPD 221 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec-CCHH
Confidence 43 99999 2 57777888999999999999999999999999999999864 4443
No 466
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.6e-20 Score=175.47 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=120.4
Q ss_pred ceEEeeeEEEeCCce-eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHH--
Q psy16366 59 DIKVENFSLSAKGVE-LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI-- 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~-ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~-- 135 (568)
||.+.+++.+|+... +++|+||++..|+++||.||||+||||+||+|++.. +|..+.+..++-+..-++..+...
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL--~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL--IPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc--cCCCceEEEeecccccChHHHhhhcc
Confidence 578999999999875 999999999999999999999999999999999964 566666666654443332222111
Q ss_pred HHhcc---HHHHHH---HHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 136 VLSAD---KNRVKL---LKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 136 v~~~~---~~~~~l---~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
|+... ..+... +.-...+..+...+...+..++.++|. ..+..+-+.+++..++..-+.. +||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 00000 000000 000111111222223345555555442 2334556666666665432222 899
Q ss_pred Cc---------hHHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 199 PS---------SRVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 199 eP---------n~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|| +.+.++++ +-+.+||+.||+++.+..+||+||+|++|++++ .|+.+.
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~-~gs~~~ 219 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL-EGSIEA 219 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE-cCCHHH
Confidence 99 24445444 346899999999999999999999999999885 565443
No 467
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=2e-20 Score=185.45 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=110.4
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-H----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-A----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~----~~ 134 (568)
|+++|+++.|+++++|+|+||+|.+|+++||+|+||||||||+++|+|... |..+.+.+.+.++...+.. . +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 468999999998899999999999999999999999999999999999743 3344444433332211100 0 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhhccCCChHHHHHHHHHHH--------hccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 135 IVLSADKN--RVKLLKECSKLERDESGDNQLRLTEVYDEL--------KSIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~~~~~~~~~~l~~v~~el--------~~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+.+.... .....+..................++.+.+ ..+...+.+++.+..++..-... ++|||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 11111000 000000000000000000011111222111 12233577777776665443322 88999
Q ss_pred h---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 201 S---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 201 n---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
. ++.+++.+ .+.|+|+||||.+++..+||+|++|++|+++.. |+.+.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~-~~~~~ 218 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS-GAGDE 218 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 2 44444443 378999999999999999999999999999754 44443
No 468
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-20 Score=190.13 Aligned_cols=187 Identities=17% Similarity=0.250 Sum_probs=113.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~~ 134 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.+.++....... +.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheE
Confidence 5889999999998899999999999999999999999999999999999643 33444444332221100000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhhccCC----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC-------C
Q psy16366 135 IVLSADKN--RVKLLKECSKLERDESG----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF-------T 194 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~~~~~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~-------~ 194 (568)
.+.+.... .....+.. .+...... ....+..++.+.+. .....+.+++.+..++..-. .
T Consensus 80 ~~~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVV-AMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred EEccCCcCCCCCCHHHHH-HhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 01110000 00000000 00000000 01112233333221 22345777887777665544 2
Q ss_pred c---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 T---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 ~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+ ++|||. +|.++.+..+.|||+||||++++..+||+|++|++|+++. .|.++.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPAEV 228 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHHHH
Confidence 2 889991 4555443447899999999999999999999999999975 4555443
No 469
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=2.7e-20 Score=184.65 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=110.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|... |..+.+.+.+.++....... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999998899999999999999999999999999999999999743 33444433332221100000 00
Q ss_pred HHHhccHHH--HHHHHHHHH-HhhccCC--ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 135 IVLSADKNR--VKLLKECSK-LERDESG--DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~-l~~~~~~--~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+..... ....+.... ....... ....++.++.+.+. .....+.+++.+..++..-... ++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 001100000 000000000 0000000 01112233333221 1233567777776665443332 889
Q ss_pred Cch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 199 PSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 199 ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
||. ++.++++ ..+.|||+||||++++..+||+|++|++|++.. .|+.+.
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 219 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEE 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHH
Confidence 992 3333332 347899999999999999999999999999975 455443
No 470
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.3e-20 Score=186.46 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=113.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC----chh--H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS----DDS--A 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~----~~~--~ 132 (568)
+|.++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++... ... .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHH
Confidence 5889999999998899999999999999999999999999999999999743 3445555444332110 000 0
Q ss_pred ----HHHHHhccHHHH---HHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 ----VNIVLSADKNRV---KLLKECSK-LERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 ----~~~v~~~~~~~~---~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+.. ... ...+.... ........ ...+..++.+.+. .....+.+++.+..++..-..
T Consensus 80 ~~~~i~~~~q~~-~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 80 LRRNVGMVFQQY-NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHhheEEEecCc-cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 00000000 000 00000000 00000000 0112222222221 123356677777666544332
Q ss_pred c----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 T----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++|||. ++.+++++ .+.|+|+||||.+++..+||++++|++|++.. .|+++.+
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 228 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCF 228 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 2 889992 55555543 37899999999999999999999999999974 5666654
No 471
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=191.40 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=112.9
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA--- 132 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~--- 132 (568)
....|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++.......
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhh
Confidence 3457999999999998899999999999999999999999999999999999743 33444444333221111000
Q ss_pred -HHHHHhccHHH--HHHHHHHHHHhhcc-------CCC-hHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -VNIVLSADKNR--VKLLKECSKLERDE-------SGD-NQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -~~~v~~~~~~~--~~l~~~~~~l~~~~-------~~~-~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+..... ....+.. ...... ... ...++.++.+.+ ......+.+++.+..++..-..
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELV-ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred heEEeeccCcCCCCCcHHHHH-HhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 00011100000 0000000 000000 000 011223333322 1223456777777666554333
Q ss_pred c----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 195 T----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
. |+|||. ++.+++. ..+.|||+||||++++..+||+|++|++|+++.. |..+
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 229 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ-GAPK 229 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 2 889992 3444443 3478999999999999999999999999998754 4443
No 472
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=192.22 Aligned_cols=187 Identities=23% Similarity=0.348 Sum_probs=114.7
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----H
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~ 133 (568)
.|+++|++++|+ +.++|+|+||+|.+|+++||+|+||||||||+++|+|... |..+.+.+.+..+....... +
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhE
Confidence 689999999996 5689999999999999999999999999999999999643 34455555443332111100 1
Q ss_pred HHHHhccHHH-H--HHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 134 NIVLSADKNR-V--KLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 134 ~~v~~~~~~~-~--~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
..+.+..... . ...+... +.. ..... ...++.++.+.+. .+...+.+++.|..|+..-...
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVA-FGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEecChhhhhccCcHHHHHH-hhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1111110000 0 0000000 000 00000 1122333333321 1234577777777766543332
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. ++.++++. .+.|||+||||++++..+||+|++|++|+++.+ |+.+.+
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE-GDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHh
Confidence 889992 44444433 278999999999999999999999999999865 444544
No 473
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.85 E-value=4.2e-20 Score=182.84 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=107.2
Q ss_pred cceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-
Q psy16366 58 VDIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~- 132 (568)
.+|+++|++++|++ .++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++.+.......
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHH
Confidence 46999999999975 369999999999999999999999999999999999743 33444444333321111000
Q ss_pred -------HHHHHhccHH--HHHHHHHHHHHhhccC---CChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 133 -------VNIVLSADKN--RVKLLKECSKLERDES---GDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 133 -------~~~v~~~~~~--~~~l~~~~~~l~~~~~---~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
+..+.+.... .....+.......... .....++.++.+.+. .....+.+++.+..++..-.
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 0000000000 0000000000000000 001122223333221 22345677777776665433
Q ss_pred Cc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 194 TT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
.. ++|||. ++.+++ ++.+.|||+||||.+++.. ||++++|++|+++.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 32 889992 444444 3457899999999999865 99999999999864
No 474
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=8.4e-21 Score=190.71 Aligned_cols=192 Identities=16% Similarity=0.245 Sum_probs=113.2
Q ss_pred eEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC---CceEEEEeccccCCchhH
Q psy16366 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 60 I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~---~~~i~~~~qe~~~~~~~~ 132 (568)
++|+|++++|.. ..+++||||+|.+||++||||+|||||||+.++|.|....-|. ++.+.+.++++...+...
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 679999999843 4799999999999999999999999999999999996321111 234555555543322211
Q ss_pred H--------HHHHhccHHHH----HHHHHHHHHhhc-cCC-ChHHHHHHHHHHHhccCC-------------CChHHHHH
Q psy16366 133 V--------NIVLSADKNRV----KLLKECSKLERD-ESG-DNQLRLTEVYDELKSIEA-------------DAAEPRAR 185 (568)
Q Consensus 133 ~--------~~v~~~~~~~~----~l~~~~~~l~~~-~~~-~~~~~l~~v~~el~~~~~-------------~~~~~~~~ 185 (568)
. ..++|...... .+-.+..+.... ... ...+....+.+.|+.++. .+++.++|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 1 11111111000 000010000000 000 001111222222222221 24445555
Q ss_pred HHHHhcC-CCc---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 186 RILAGLG-FTT---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 186 ~~L~~lg-~~~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
..++-.- ..+ +.|||. .|.++.++.+.|+|+||||+..+.++||||++|..|+|+..+...+.
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 4443221 111 778992 56666667899999999999999999999999999999997665555
Q ss_pred HHH
Q psy16366 249 FKK 251 (568)
Q Consensus 249 ~~~ 251 (568)
|..
T Consensus 242 ~~~ 244 (316)
T COG0444 242 FKN 244 (316)
T ss_pred hcC
Confidence 543
No 475
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=2.5e-20 Score=196.04 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC--ceEEEEeccccCCch--hHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS--IDLLYCEQEVEASDD--SAVN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~--~~i~~~~qe~~~~~~--~~~~ 134 (568)
.|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |.. +.+.+.+.++..... ..+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4789999999998899999999999999999999999999999999999743 344 555444433321100 0011
Q ss_pred HHHhccHHHHHHHHHHHHHh------hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cC
Q psy16366 135 IVLSADKNRVKLLKECSKLE------RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IY 197 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~------~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~ 197 (568)
.+++... .+.-+...+.+. .........+..++.+.+. .....+.++++|.+|+..-... |+
T Consensus 83 ~vfQ~~~-l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 83 LLFQNYA-LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEECCcc-cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111100 000000000000 0000011223334444331 1234577888888776544332 88
Q ss_pred CCch-------------HHHHHHhcc-CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 198 IPSS-------------RVHEIMRTW-KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 198 ~ePn-------------~L~~~l~~~-~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
|||. .|.++.+++ +.|+|+||||++++..+||+|++|++|++...+.
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9991 344444455 7899999999999999999999999999987543
No 476
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.85 E-value=1.7e-20 Score=185.45 Aligned_cols=181 Identities=18% Similarity=0.224 Sum_probs=112.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc---cCCCceEEEEeccccCCc--hhHH-
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEASD--DSAV- 133 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~---ip~~~~i~~~~qe~~~~~--~~~~- 133 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|...+ .|..+.+.+.++++.... ....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 5789999999888999999999999999999999999999999999997410 234455555443332111 0000
Q ss_pred ---HHHHhccHHHHHHHHHHHHHhh---ccC-CC---hHHHHHHHHHHH------h-c--cCCCChHHHHHHHHHhcCCC
Q psy16366 134 ---NIVLSADKNRVKLLKECSKLER---DES-GD---NQLRLTEVYDEL------K-S--IEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 134 ---~~v~~~~~~~~~l~~~~~~l~~---~~~-~~---~~~~l~~v~~el------~-~--~~~~~~~~~~~~~L~~lg~~ 194 (568)
..+.+.. .... ....+.+.. ... .. ...++.++.+.+ . . ....+.+++.+..++..-+.
T Consensus 81 ~~i~~~~q~~-~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 81 RRVGMVFQKP-NPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred hhEEEEecCc-hhcc-ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 0011110 0000 000000000 000 00 112233333332 1 1 24567778877777654333
Q ss_pred c----cCCCch---------HHHHHHhccC--CeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 195 T----IYIPSS---------RVHEIMRTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~~~--~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++|||. ++.++++++. .|||+||||++++..+||+|++|++|+++.+
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 2 889992 4555554432 6999999999999999999999999999865
No 477
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.85 E-value=2.8e-20 Score=183.03 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=107.7
Q ss_pred eEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HH
Q psy16366 60 IKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VN 134 (568)
Q Consensus 60 I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~ 134 (568)
|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++....... +.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEE
Confidence 578999999976 789999999999999999999999999999999999743 33444444333321100000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhhccC-C--ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 135 IVLSADKN--RVKLLKECSKLERDES-G--DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~~~~-~--~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+.... .....+.......... . ....+..++.+.+. .....+.+++.+..++..-... ++|
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 00100000 0000000000000000 0 00112223333221 1233566777776665433332 889
Q ss_pred Cch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 199 PSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 199 ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
||. ++.++++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 992 444555433 47999999999999999999999999999854
No 478
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=2.6e-20 Score=185.93 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=114.0
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|.....|..+.+.+.+.++....... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 4689999999988999999999999999999999999999999999996311244455544443322111000 00
Q ss_pred HHHhccH-----HHHHHHHHH-HHHhhcc-----C-CChHHHHHHHHHHHh--------ccC-CCChHHHHHHHHHhcCC
Q psy16366 135 IVLSADK-----NRVKLLKEC-SKLERDE-----S-GDNQLRLTEVYDELK--------SIE-ADAAEPRARRILAGLGF 193 (568)
Q Consensus 135 ~v~~~~~-----~~~~l~~~~-~~l~~~~-----~-~~~~~~l~~v~~el~--------~~~-~~~~~~~~~~~L~~lg~ 193 (568)
.+.+... .....+... ....... . .....++.++.+.+. ... ..+.+++.+..++..-+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 1111100 000000000 0000000 0 000122333333221 122 26777777777665433
Q ss_pred Cc----cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhh-hceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v-~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. ++|||. ++.++++++ +.|||+||||++++..+ ||+|++|++|++.. .|+.+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVELA 232 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHHHh
Confidence 32 889992 555555543 68999999999999998 89999999999975 5666544
No 479
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.3e-20 Score=182.68 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=111.9
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|.++|++++|+++++|+++||+|.+||++||+||||||||||+++|+|... |..+.+.+.++++...+...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhC
Confidence 36999999999988899999999999999999999999999999999999743 33444544433322111000
Q ss_pred HHHHHhccHHHH---HHHHHHHHHhh-ccCC-ChHHHHHHHHHHH--------hccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNRV---KLLKECSKLER-DESG-DNQLRLTEVYDEL--------KSIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~---~l~~~~~~l~~-~~~~-~~~~~l~~v~~el--------~~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+.. ... ...+.. .+.. .... .....+.++.+.+ ......+.+++.+..++..-...
T Consensus 82 i~~~~q~~-~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 82 VAIVPEGR-RVFSRMTVEENL-AMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEEeccCc-ccCCCCcHHHHH-HHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 00000000 000 000000 0000 0000 0011111111111 12234567777777665543332
Q ss_pred cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
++|||. .+.++++ +.+.|||++|||.+++..+||++++|++|+++. .|+.+.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 223 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGDA 223 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHHH
Confidence 889992 3333332 347899999999999999999999999999975 455443
No 480
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=177.85 Aligned_cols=189 Identities=19% Similarity=0.261 Sum_probs=117.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH---HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV---NI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~---~~ 135 (568)
+|+++|+|++..|+.+++++||++.+||..+|+||||+|||||||+|+|.. -|.++.+.+.+.....-..... .+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel--~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL--SPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc--CCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 588999999999999999999999999999999999999999999999974 3566677776655432222211 12
Q ss_pred HHhccHHHHH-H-HHHHHHHhhccC--CC----hHHHHHHHHHHHh-------ccCCCChHHHHHHHHH----hcCCC--
Q psy16366 136 VLSADKNRVK-L-LKECSKLERDES--GD----NQLRLTEVYDELK-------SIEADAAEPRARRILA----GLGFT-- 194 (568)
Q Consensus 136 v~~~~~~~~~-l-~~~~~~l~~~~~--~~----~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~----~lg~~-- 194 (568)
|+.......- + ..+.-.+...+. +. +.......+.... .....++++++|.-|+ .+--.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 2211111100 0 011111111111 11 1111222222211 1112356666665444 33211
Q ss_pred -c---cCCCch------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 -T---IYIPSS------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 -~---L~~ePn------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++|||. .+.+-+..-+..|++|=||++....+||||+.|++|+++..+.+.+.+
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 1 789992 233334455799999999999999999999999999999865544443
No 481
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=5.2e-20 Score=181.44 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=109.7
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
+|.++|++++| +++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHH
Confidence 37899999999 66789999999999999999999999999999999999643 34455544443332111000
Q ss_pred --HHHHHhccHH--HHHHHHHHHHHhh-ccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 133 --VNIVLSADKN--RVKLLKECSKLER-DESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 --~~~v~~~~~~--~~~l~~~~~~l~~-~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
+..+.+.... .....+.. .+.. ...... ..++.++.+.+. .....+.+++.+..++..-...
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNV-AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred hheEEEecCccccccccHHHHH-HhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 0001110000 00000000 0000 000000 112223333321 1234566777776665543332
Q ss_pred --cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 196 --IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
++|||. .+.+++. ..+.|+|+||||.+++..+||+|++|++|+++.-.|
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccCCC
Confidence 889992 2333333 236899999999999999999999999999875444
No 482
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.84 E-value=4.9e-20 Score=186.79 Aligned_cols=188 Identities=18% Similarity=0.228 Sum_probs=112.9
Q ss_pred ceEEeeeEEEeCC---------ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc
Q psy16366 59 DIKVENFSLSAKG---------VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 129 (568)
Q Consensus 59 ~I~i~nls~~~~~---------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~ 129 (568)
+|+++|++++|++ +++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 5899999999962 479999999999999999999999999999999999743 33444544333332111
Q ss_pred hhH----HHHHHhccH-------HHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhc--------cCCCChHHHHHHHHH
Q psy16366 130 DSA----VNIVLSADK-------NRVKLLKECSKLER-DESGDNQLRLTEVYDELKS--------IEADAAEPRARRILA 189 (568)
Q Consensus 130 ~~~----~~~v~~~~~-------~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~~L~ 189 (568)
... +..+.+... .....+........ .........+.++.+.+.. ....+.+++++..|+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 000 000001000 00000000000000 0000011222333333211 133566777777666
Q ss_pred hcCCCc----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-... |+|||. ++.+++. ..+.|||+||||++++..+||+|++|++|++.. .|+++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 237 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RGSTADV 237 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHH
Confidence 443332 889991 4444443 347899999999999999999999999999974 5666554
No 483
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.7e-20 Score=188.94 Aligned_cols=187 Identities=18% Similarity=0.299 Sum_probs=111.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~~ 134 (568)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|... |..+.+.+.+.++....... +.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheE
Confidence 5899999999998899999999999999999999999999999999999743 33344443332221100000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHh------hcc--CCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 135 IVLSADKN--RVKLLKECSKLE------RDE--SGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~------~~~--~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
.+.+...- .....+.. ... .+. ......++.++.+.+. .....+.+++.+..++..-...
T Consensus 80 ~~~q~~~~~~~~tv~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 80 LLPQHHLTPEGITVRELV-AYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EecccCCCCCCccHHHHH-HhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 00000000 00000000 000 000 0001112223333221 1234567777776665433322
Q ss_pred --cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 --IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+|||. ++.++++. .+.|||++|||++++.++||+|++|++|++.. .|.++.+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 225 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEV 225 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHh
Confidence 889992 44444433 37899999999999999999999999999875 4555443
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3e-20 Score=190.24 Aligned_cols=186 Identities=15% Similarity=0.216 Sum_probs=113.5
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc----
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD---- 129 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~---- 129 (568)
.|+++|++++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|... |..+.+.+.+.++....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 4889999999963 369999999999999999999999999999999999643 44555655444442110
Q ss_pred hh----HHHHHHhccH-HHH--HHHHHHHHHhhccC-CC---hHHHHHHHHHHHh--------ccCCCChHHHHHHHHHh
Q psy16366 130 DS----AVNIVLSADK-NRV--KLLKECSKLERDES-GD---NQLRLTEVYDELK--------SIEADAAEPRARRILAG 190 (568)
Q Consensus 130 ~~----~~~~v~~~~~-~~~--~l~~~~~~l~~~~~-~~---~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~ 190 (568)
.. .+..+++... ... ...+.. .+..... .. ...+..++.+.+. .....+.+++.+..++.
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~tv~e~i-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFEDTVEREI-IFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHHhheEEEecChHhccchhhHHHHH-HhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 00 0111122110 000 000000 0000000 01 1122223333221 12234666777766655
Q ss_pred cCCCc----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-... |+|||. ++.++++ ..+.|||+||||++++..+||+|++|++|+++.. |..+.
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~-g~~~~ 232 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ-TSPKE 232 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 43322 889992 4555444 3478999999999999999999999999999864 55544
No 485
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8e-20 Score=183.62 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=114.2
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC---CCceEEEE-------------
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYC------------- 121 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip---~~~~i~~~------------- 121 (568)
.+|.++|++++|+.+.+|+|+||+|.+|+++||+|+||||||||+++|+|...+.| ..+.+.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 36899999999988899999999999999999999999999999999999632112 13444333
Q ss_pred --------eccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCCh-HHHHHHHHHHH-----------hccCCCChH
Q psy16366 122 --------EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN-QLRLTEVYDEL-----------KSIEADAAE 181 (568)
Q Consensus 122 --------~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~-~~~l~~v~~el-----------~~~~~~~~~ 181 (568)
.|+......+..+.+... .........+. ..+..+..+.+ ......+.+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYG-----------LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHH-----------HHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 332211111111110000 00000000000 01111111111 122345677
Q ss_pred HHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCCh
Q psy16366 182 PRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246 (568)
Q Consensus 182 ~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y 246 (568)
++.+..++..-+.. |+|||. ++.+++..+ +.|+|+||||++++..+||+|++|++|+++.++.++
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 77776665543332 889992 555555443 479999999999999999999999999999876666
Q ss_pred hHHH
Q psy16366 247 TLFK 250 (568)
Q Consensus 247 ~~~~ 250 (568)
+.|.
T Consensus 233 ~~~~ 236 (252)
T PRK14255 233 QMFL 236 (252)
T ss_pred HHhc
Confidence 6553
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.84 E-value=2.4e-20 Score=171.49 Aligned_cols=131 Identities=32% Similarity=0.455 Sum_probs=96.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~ 139 (568)
|+++|+++.|++..+|+++||++++||+++|+|+||||||||+++|+|... |..+.+.+.+... +..
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~~~-------i~~---- 67 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGSTVK-------IGY---- 67 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCeEE-------EEE----
Confidence 468999999988889999999999999999999999999999999999743 3344443322100 000
Q ss_pred cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHH
Q psy16366 140 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHEI 206 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~ 206 (568)
... .+.+++.+..|+..-... ++|||. ++.++
T Consensus 68 ----------------~~~-------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 112 (144)
T cd03221 68 ----------------FEQ-------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112 (144)
T ss_pred ----------------Ecc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 000 233444444333322222 888992 67778
Q ss_pred HhccCCeEEEEeCCHHHHHhhhceeeEEcCCe
Q psy16366 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 238 (568)
Q Consensus 207 l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~ 238 (568)
+++++.|+|+|||+.+++..+||++++|++||
T Consensus 113 l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 113 LKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 88888899999999999999999999999885
No 487
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.84 E-value=5.6e-20 Score=184.62 Aligned_cols=172 Identities=19% Similarity=0.308 Sum_probs=111.2
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCch--
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASDD-- 130 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~~-- 130 (568)
+|+++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|...|..+. ..+.|+.|+......
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP 83 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC
Confidence 689999999999889999999999999999999999999999999999974332221 134566665432211
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 131 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
..+...+... ......++.++.+.+ ......+.+++.+..++..-... ++||
T Consensus 84 ~~~~~~~~~~-----------------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 84 LTVNRFLRLR-----------------PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred hhHHHHHhcc-----------------ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0111100000 000001111222211 12334577777777765543332 8899
Q ss_pred ch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 SS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 Pn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|. ++.+++ +.++.|||+||||++++..+||+|++|++ +++. .|+.+.+
T Consensus 147 Pt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~~~~~ 207 (251)
T PRK09544 147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGTPEVV 207 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCCHHHH
Confidence 91 444444 33478999999999999999999999975 6654 4554443
No 488
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=2.5e-20 Score=188.73 Aligned_cols=187 Identities=17% Similarity=0.280 Sum_probs=112.6
Q ss_pred ceEEeeeEEEeC---------CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc
Q psy16366 59 DIKVENFSLSAK---------GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 129 (568)
Q Consensus 59 ~I~i~nls~~~~---------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~ 129 (568)
+|+++|++++|+ ++.+|+|+||+|.+||++||+|+||||||||+++|+|... |..+.+.+.+.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 488999999995 3679999999999999999999999999999999999643 34445544433332111
Q ss_pred hhH-------HHHHHhccH-------HHHHHHHHH-HHHhhccCCChHHHHHHHHHHHhc--------cCCCChHHHHHH
Q psy16366 130 DSA-------VNIVLSADK-------NRVKLLKEC-SKLERDESGDNQLRLTEVYDELKS--------IEADAAEPRARR 186 (568)
Q Consensus 130 ~~~-------~~~v~~~~~-------~~~~l~~~~-~~l~~~~~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~ 186 (568)
... +..+.+... .....+... .....+.......+..++.+.+.. ....+.+++.+.
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 000 000001000 000000000 000000000111223333333211 123466677776
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.++..-+.. |+|||. +|.++.+..+.|||+||||++++..+||++++|++|+++. .|..+.
T Consensus 160 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 237 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQ 237 (265)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHH
Confidence 665443332 889992 4555555457899999999999999999999999999975 455443
No 489
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=189.87 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=112.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC------CCceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP------SSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip------~~~~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|...|.- ..+.+.+.+.++.......
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4789999999998999999999999999999999999999999999999643210 0455555443332111111
Q ss_pred H----HHHHhccHHH--HHHHHHHHHHhhccC----C----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 133 V----NIVLSADKNR--VKLLKECSKLERDES----G----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 133 ~----~~v~~~~~~~--~~l~~~~~~l~~~~~----~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
. ..+.+..... ....+.. ....... . ....+..++.+.+. .....+.+++.+..++..
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHH-hhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 0 0011110000 0000000 0000000 0 01122233333321 123457777777766554
Q ss_pred CC----------Cc---cCCCch---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 192 GF----------TT---IYIPSS---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 192 g~----------~~---L~~ePn---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
-+ .+ |+|||. ++ .++.++++.|||+||||++++..+||++++|++|+++.. |+
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~-g~ 238 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH-GA 238 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe-cC
Confidence 44 22 889992 34 444444578999999999999999999999999999754 44
Q ss_pred h
Q psy16366 246 F 246 (568)
Q Consensus 246 y 246 (568)
.
T Consensus 239 ~ 239 (272)
T PRK13547 239 P 239 (272)
T ss_pred H
Confidence 3
No 490
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=2.2e-20 Score=184.69 Aligned_cols=181 Identities=18% Similarity=0.234 Sum_probs=108.0
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch---h
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD---S 131 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~---~ 131 (568)
+|.++|++++|+++ ++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++...+. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHH
Confidence 37899999999765 79999999999999999999999999999999999743 344455444433321110 0
Q ss_pred H----HHHHHhccHHH----HHHHHHHH-HHhhccCCC--hH-HH-HHHHHHHHh--------ccCCCChHHHHHHHHHh
Q psy16366 132 A----VNIVLSADKNR----VKLLKECS-KLERDESGD--NQ-LR-LTEVYDELK--------SIEADAAEPRARRILAG 190 (568)
Q Consensus 132 ~----~~~v~~~~~~~----~~l~~~~~-~l~~~~~~~--~~-~~-l~~v~~el~--------~~~~~~~~~~~~~~L~~ 190 (568)
. +..+.+..... ....+... .+....... .. .. ..++.+.+. .....+.+++.+..++.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHH
Confidence 0 00011110000 00000000 000000000 00 01 012222221 12335677777777665
Q ss_pred cCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 191 LGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
.-+.. |+|||. ++.+++ ++.+.|||+||||.+++..+||+|++|++|+++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 44333 889991 344444 3337899999999999999999999999999864
No 491
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=188.96 Aligned_cols=190 Identities=14% Similarity=0.190 Sum_probs=114.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCCc--hh
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASD--DS 131 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~~--~~ 131 (568)
..+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|...+. |..+.+.+.++.+.... ..
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 34799999999998889999999999999999999999999999999999974331 23455555444332110 00
Q ss_pred H----HHHHHhccHHH-HHHHHHHH---HHhhccCC-ChHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHhc
Q psy16366 132 A----VNIVLSADKNR-VKLLKECS---KLERDESG-DNQLRLTEVYDELK-----------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 132 ~----~~~v~~~~~~~-~~l~~~~~---~l~~~~~~-~~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~l 191 (568)
. +..+.+..... ....+... ........ ....++.++.+.+. .....+.+++++..++..
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0 00001100000 00000000 00000000 00112222222111 123457777877777654
Q ss_pred CCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. ++|||. ++.++++.+ +.|||+||||++++..+||+|++|++|+++.. |..+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 234 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE-SSTD 234 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 4432 889992 444444433 57999999999999999999999999999864 4433
No 492
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.3e-20 Score=190.00 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=116.7
Q ss_pred CCCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCC-c
Q psy16366 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEAS-D 129 (568)
Q Consensus 54 ~~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~-~ 129 (568)
+..+.+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|...|. |..+.+.+.+..+... .
T Consensus 16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 33456899999999999999999999999999999999999999999999999974332 2344554433222110 0
Q ss_pred hhH----HHHHHhccHHH-HHHHHHHHH-Hhhcc-CCCh--HHHHHHHHHHHh-----------ccCCCChHHHHHHHHH
Q psy16366 130 DSA----VNIVLSADKNR-VKLLKECSK-LERDE-SGDN--QLRLTEVYDELK-----------SIEADAAEPRARRILA 189 (568)
Q Consensus 130 ~~~----~~~v~~~~~~~-~~l~~~~~~-l~~~~-~~~~--~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~ 189 (568)
... +..+.+..... ....+.... ..... .... ..+..++.+.+. .....+.+++.+..|+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 000 00111100000 000000000 00000 0000 011122222221 1234577777777766
Q ss_pred hcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-... |+|||. +|.++|+.+ ..|||+||||++++..+||++++|++|+++.. |..+.+
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~-g~~~~~ 249 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE-GPTEQL 249 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 543332 889992 555555543 47999999999999999999999999999864 444433
No 493
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.9e-20 Score=189.68 Aligned_cols=185 Identities=14% Similarity=0.224 Sum_probs=110.1
Q ss_pred cceEEeeeEEEeCCc-----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC---C-
Q psy16366 58 VDIKVENFSLSAKGV-----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA---S- 128 (568)
Q Consensus 58 ~~I~i~nls~~~~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~---~- 128 (568)
..|+++|++++|+++ ++|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++.. .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccccc
Confidence 358999999999764 49999999999999999999999999999999999743 334444443322210 0
Q ss_pred -chhH----HHHHHhccH-HHHH-HHHHHHHHhhc-cCCCh---HHHHHHHHHHHh--------ccCCCChHHHHHHHHH
Q psy16366 129 -DDSA----VNIVLSADK-NRVK-LLKECSKLERD-ESGDN---QLRLTEVYDELK--------SIEADAAEPRARRILA 189 (568)
Q Consensus 129 -~~~~----~~~v~~~~~-~~~~-l~~~~~~l~~~-~~~~~---~~~l~~v~~el~--------~~~~~~~~~~~~~~L~ 189 (568)
.... +..+.+... .... ...+.-.+... ..... ..++.++.+.+. .....+.+++.+..++
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 0000 000111100 0000 00000000000 00000 112233333221 1223567777777665
Q ss_pred hcCCCc----cCCCch---------H----HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 190 GLGFTT----IYIPSS---------R----VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~----L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
..-+.. ++|||. + |.++.+..+.|||+||||++++..+||+|++|++|+++.++.
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 433322 889991 3 444444457899999999999999999999999999986543
No 494
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-20 Score=190.25 Aligned_cols=188 Identities=21% Similarity=0.277 Sum_probs=112.2
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----H
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----V 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~ 133 (568)
..|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|... |..+.+.+.+.++....... +
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhhe
Confidence 36899999999988899999999999999999999999999999999999643 33444444332221100000 0
Q ss_pred HHHHhccHH--HHHHHHHHHH-Hhhc----c-CC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 134 NIVLSADKN--RVKLLKECSK-LERD----E-SG-DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 134 ~~v~~~~~~--~~~l~~~~~~-l~~~----~-~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
..+.+.... .....+.... .... . .. ....+..++.+.+. .....+.+++.+..|+..-...
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 000000000 0000000000 0000 0 00 01112223333221 1234577777777665443332
Q ss_pred --cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 --IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 --L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .|.++.+..+.|||+||||++++..+||+|++|++|+++. .|..+.
T Consensus 168 lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~-~~~~~~ 234 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA-QGTPAE 234 (265)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHH
Confidence 889992 3444434447899999999999999999999999999975 344443
No 495
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.1e-20 Score=187.99 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=113.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC---CceEEEEeccccCC--chh
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEAS--DDS 131 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~---~~~i~~~~qe~~~~--~~~ 131 (568)
..+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|...+.|. .+.+.+.++++... ...
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3479999999999988999999999999999999999999999999999996432231 44554444333211 000
Q ss_pred H----HHHHHhccHHH-HHHHHHHH---HHhhccCC-ChHHHHHHHHHHH-----------hccCCCChHHHHHHHHHhc
Q psy16366 132 A----VNIVLSADKNR-VKLLKECS---KLERDESG-DNQLRLTEVYDEL-----------KSIEADAAEPRARRILAGL 191 (568)
Q Consensus 132 ~----~~~v~~~~~~~-~~l~~~~~---~l~~~~~~-~~~~~l~~v~~el-----------~~~~~~~~~~~~~~~L~~l 191 (568)
. +..+.+...-. ....+... ........ .......++.+.+ ......+.+++.+..|+..
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART 163 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence 0 00000000000 00000000 00000000 0011122222211 1123456777777766554
Q ss_pred CCCc----cCCCc---------hHHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPS---------SRVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~eP---------n~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. |+||| .++.+++..+ +.|||++|||.+++..+||+|++|++|+++.. |..+
T Consensus 164 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 233 (253)
T PRK14261 164 LAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF-DKTT 233 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc-CCHH
Confidence 3332 88999 2555555443 47999999999999999999999999999864 4443
No 496
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-20 Score=192.54 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=114.3
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC--c--
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS--D-- 129 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~--~-- 129 (568)
.|+++|++++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|... |..+.+.+.++++... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 4899999999964 469999999999999999999999999999999999743 4455555555443210 0
Q ss_pred hhH----HHHHHhccH-HHH--HHHHHHHHHhhccCC-C---hHHHHHHHHHHHh--------ccCCCChHHHHHHHHHh
Q psy16366 130 DSA----VNIVLSADK-NRV--KLLKECSKLERDESG-D---NQLRLTEVYDELK--------SIEADAAEPRARRILAG 190 (568)
Q Consensus 130 ~~~----~~~v~~~~~-~~~--~l~~~~~~l~~~~~~-~---~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~ 190 (568)
... +..+++... ... ...+.. .+.....+ . ...+..++++.+. .+...+.+++.+..|+.
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 80 LKPLRKKVGIVFQFPEHQLFEETVEKDI-CFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHHHhhEEEEeeCchhhhhhhhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 000 111111110 000 010100 00000000 1 1123333443322 12234667777766655
Q ss_pred cCCCc----cCCCch---------HHH----HHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVH----EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~----~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-... ++|||. ++. ++.++.+.|||+||||.+++..+||||++|++|+++. .|+.+.
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~-~g~~~~ 232 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL-QGTPRE 232 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 43332 889992 333 3334457899999999999999999999999999985 455544
No 497
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=3.2e-20 Score=186.50 Aligned_cols=187 Identities=15% Similarity=0.241 Sum_probs=110.8
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc----------
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD---------- 129 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~---------- 129 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++...+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccc
Confidence 578999999988899999999999999999999999999999999999643 34445544333331100
Q ss_pred -h--hH----HHHHHhccHHH--HHHHHHHHH--Hh--hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 130 -D--SA----VNIVLSADKNR--VKLLKECSK--LE--RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 130 -~--~~----~~~v~~~~~~~--~~l~~~~~~--l~--~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
. .. +..+.+..... ..+.+.... .. ............++.+.+. .....+.+++.+..++
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence 0 00 00000000000 000000000 00 0000000112222222221 1223466677776665
Q ss_pred hcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-... ++|||. ++.+++ ++.+.|+|+||||++++..+||++++|++|+++. .|+++.+
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEI 234 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 443322 889992 343433 3347899999999999999999999999999975 4665544
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.84 E-value=5.2e-20 Score=183.18 Aligned_cols=186 Identities=13% Similarity=0.178 Sum_probs=109.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~ 135 (568)
+|+++|++++|+++++|+++||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++....... +..
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEE
Confidence 4789999999988899999999999999999999999999999999999743 33444443332221100000 000
Q ss_pred HHhccHH--HHHHHHHHHHHhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 136 VLSADKN--RVKLLKECSKLERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 136 v~~~~~~--~~~l~~~~~~l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+.+.... .....+............ ......++.+.+. .+...+.+++.+..++..-+.. ++||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0000000 000000000000000000 0112222333221 1233567777776665443332 8899
Q ss_pred ch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 200 SS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 200 Pn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|. ++.++++ +.+.|+|+||||++++.. ||+|++|++|++... |..+.
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~-~~~~~ 218 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD-GAAAE 218 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe-CCHHH
Confidence 91 4444443 346899999999999975 999999999999754 55443
No 499
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.8e-20 Score=186.96 Aligned_cols=184 Identities=13% Similarity=0.220 Sum_probs=110.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC---CCceEEEEeccccCCc--hhH-
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASD--DSA- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip---~~~~i~~~~qe~~~~~--~~~- 132 (568)
.|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+.| ..+.+.+.++++.... ...
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 3789999999988899999999999999999999999999999999999743112 2455544443332100 000
Q ss_pred ---HHHHHhccHH--HHHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHhcC
Q psy16366 133 ---VNIVLSADKN--RVKLLKECSK-LERDESGD---NQLRLTEVYDELK-----------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 133 ---~~~v~~~~~~--~~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~lg 192 (568)
+..+.+.... .....+.... ........ ...+..++.+.+. .....+.+++.+..|+..-
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 0000000000 0000000000 00000000 0112222222221 1233567777777665543
Q ss_pred CCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 193 FTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 193 ~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
+.. ++|||. ++.++++++ +.|||+||||++++..+||++++|++|++..+
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 332 889992 455555443 57999999999999999999999999999865
No 500
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.84 E-value=2.8e-20 Score=183.26 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=109.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++++|+++||+|.+|+++||+|||||||||||++|+|... |..+.+.+.++++...+... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 568999999988899999999999999999999999999999999999743 33445544443332111100 11
Q ss_pred HHHhccHHH--HHHHHHHHHHhhcc-CCChHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 135 IVLSADKNR--VKLLKECSKLERDE-SGDNQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~l~~~~-~~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
.+.+..... ....+......... ......++.++.+.+. .....+.+++.+..++..-+.. ++||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 111100000 00000000000000 0001112222222221 1223566777776665443332 8899
Q ss_pred ch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCCh
Q psy16366 200 SS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246 (568)
Q Consensus 200 Pn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y 246 (568)
|. .+.+++++ .+.|||+||||.+++..+||+|++|++|++.. .|+.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 216 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTA 216 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCH
Confidence 92 33333332 46899999999999999999999999999875 3443
Done!