Query psy16366
Match_columns 568
No_of_seqs 490 out of 2583
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:28:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 3.2E-63 1.1E-67 570.0 40.4 403 56-530 432-978 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 3.1E-59 1.1E-63 515.0 34.5 414 60-539 21-492 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 3.1E-58 1.1E-62 512.2 36.4 417 59-540 83-563 (607)
4 3j16_B RLI1P; ribosome recycli 100.0 1.2E-54 4E-59 482.8 34.6 411 64-540 82-559 (608)
5 3ozx_A RNAse L inhibitor; ATP 100.0 7.2E-55 2.5E-59 479.2 30.9 296 176-526 137-462 (538)
6 3g5u_A MCG1178, multidrug resi 100.0 1.2E-53 4E-58 512.5 34.2 202 334-540 1029-1258(1284)
7 4f4c_A Multidrug resistance pr 100.0 6.7E-50 2.3E-54 481.1 33.4 201 335-540 1076-1304(1321)
8 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-48 3.8E-53 443.0 31.4 105 432-538 522-638 (670)
9 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-46 5.7E-51 379.5 25.0 204 333-539 5-232 (275)
10 1b0u_A Histidine permease; ABC 100.0 6.7E-46 2.3E-50 373.2 26.1 201 334-539 5-241 (262)
11 2olj_A Amino acid ABC transpor 100.0 1E-45 3.5E-50 371.6 27.1 201 334-539 23-247 (263)
12 3tui_C Methionine import ATP-b 100.0 9.4E-46 3.2E-50 385.6 27.8 203 332-538 21-251 (366)
13 3tif_A Uncharacterized ABC tra 100.0 5.5E-46 1.9E-50 368.1 24.5 193 335-530 1-225 (235)
14 2pcj_A ABC transporter, lipopr 100.0 8.7E-46 3E-50 364.1 24.1 192 334-530 3-219 (224)
15 4g1u_C Hemin import ATP-bindin 100.0 3.2E-45 1.1E-49 368.8 26.3 202 333-539 9-236 (266)
16 3fvq_A Fe(3+) IONS import ATP- 100.0 2.9E-45 9.9E-50 381.7 26.6 201 334-539 3-227 (359)
17 1vpl_A ABC transporter, ATP-bi 100.0 3.3E-45 1.1E-49 366.6 26.0 202 333-539 13-234 (256)
18 1ji0_A ABC transporter; ATP bi 100.0 3.4E-45 1.1E-49 363.7 25.6 202 333-539 4-227 (240)
19 1g6h_A High-affinity branched- 100.0 1.2E-45 4E-50 370.7 20.9 200 333-537 5-239 (257)
20 3rlf_A Maltose/maltodextrin im 100.0 1.4E-44 4.9E-49 378.9 27.4 199 335-538 3-221 (381)
21 1z47_A CYSA, putative ABC-tran 100.0 8.7E-45 3E-49 378.2 25.4 204 332-539 11-234 (355)
22 2nq2_C Hypothetical ABC transp 100.0 8.9E-45 3E-49 363.2 23.8 199 334-539 3-216 (253)
23 2ihy_A ABC transporter, ATP-bi 100.0 4E-45 1.4E-49 370.5 21.4 204 333-539 19-251 (279)
24 2yyz_A Sugar ABC transporter, 100.0 2.5E-44 8.4E-49 375.7 27.1 200 335-539 3-222 (359)
25 2onk_A Molybdate/tungstate ABC 100.0 1.9E-44 6.4E-49 357.9 24.4 197 335-539 1-215 (240)
26 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-44 9.8E-49 375.2 25.3 200 335-539 3-229 (353)
27 2it1_A 362AA long hypothetical 100.0 3.2E-44 1.1E-48 375.2 25.3 200 335-539 3-222 (362)
28 2yz2_A Putative ABC transporte 100.0 4.1E-44 1.4E-48 361.1 24.8 202 335-539 2-226 (266)
29 3d31_A Sulfate/molybdate ABC t 100.0 3.4E-44 1.2E-48 373.4 24.4 198 335-538 1-215 (348)
30 1v43_A Sugar-binding transport 100.0 5.2E-44 1.8E-48 374.9 25.9 200 335-539 11-230 (372)
31 1g29_1 MALK, maltose transport 100.0 6.4E-44 2.2E-48 374.8 26.0 200 335-539 3-228 (372)
32 2zu0_C Probable ATP-dependent 100.0 1.5E-43 5.2E-48 357.1 24.6 202 333-538 18-252 (267)
33 2ff7_A Alpha-hemolysin translo 100.0 1.8E-43 6E-48 352.6 23.6 199 335-538 7-230 (247)
34 2pjz_A Hypothetical protein ST 100.0 1.7E-43 6E-48 355.3 23.6 196 335-539 1-214 (263)
35 3nh6_A ATP-binding cassette SU 100.0 2.4E-43 8.1E-48 361.1 23.8 202 334-540 52-277 (306)
36 2ixe_A Antigen peptide transpo 100.0 3.4E-43 1.1E-47 355.2 23.7 200 334-539 15-244 (271)
37 2pze_A Cystic fibrosis transme 100.0 5.8E-43 2E-47 345.1 24.7 199 334-539 5-217 (229)
38 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-43 7.3E-48 352.8 21.8 197 335-536 3-229 (250)
39 1mv5_A LMRA, multidrug resista 100.0 8.6E-44 2.9E-48 354.2 18.9 201 335-540 1-226 (243)
40 2qi9_C Vitamin B12 import ATP- 100.0 4.8E-43 1.6E-47 349.5 22.3 195 335-539 4-221 (249)
41 1sgw_A Putative ABC transporte 100.0 2.9E-43 9.9E-48 343.2 18.4 189 333-528 8-210 (214)
42 2cbz_A Multidrug resistance-as 100.0 1E-42 3.4E-47 345.1 20.7 198 335-539 3-216 (237)
43 2ghi_A Transport protein; mult 100.0 6.1E-42 2.1E-46 344.0 22.7 200 334-539 16-241 (260)
44 3gd7_A Fusion complex of cysti 100.0 2.1E-41 7.3E-46 357.2 19.6 200 333-539 17-241 (390)
45 2bbs_A Cystic fibrosis transme 100.0 1.7E-40 5.9E-45 338.0 20.6 195 334-539 39-246 (290)
46 3b5x_A Lipid A export ATP-bind 100.0 3.2E-39 1.1E-43 359.9 25.6 201 334-539 340-566 (582)
47 3b60_A Lipid A export ATP-bind 100.0 2.8E-39 9.6E-44 360.3 23.8 202 334-540 340-567 (582)
48 4a82_A Cystic fibrosis transme 100.0 6.8E-39 2.3E-43 356.8 22.7 202 334-540 338-564 (578)
49 3qf4_B Uncharacterized ABC tra 100.0 5.4E-39 1.9E-43 358.9 20.7 202 334-540 353-578 (598)
50 3qf4_A ABC transporter, ATP-bi 100.0 1.6E-38 5.6E-43 354.1 23.4 201 334-540 340-566 (587)
51 2yl4_A ATP-binding cassette SU 100.0 2.4E-38 8.1E-43 353.7 23.8 199 336-539 342-569 (595)
52 2vf7_A UVRA2, excinuclease ABC 100.0 1.5E-37 5E-42 354.5 28.8 295 178-539 380-826 (842)
53 3pih_A Uvrabc system protein A 100.0 5.9E-36 2E-40 343.9 27.6 295 178-539 465-901 (916)
54 2iw3_A Elongation factor 3A; a 100.0 3.6E-36 1.2E-40 346.0 24.7 199 335-540 435-635 (986)
55 2ygr_A Uvrabc system protein A 100.0 6E-36 2.1E-40 342.7 26.3 297 178-540 522-960 (993)
56 2r6f_A Excinuclease ABC subuni 100.0 8.6E-36 2.9E-40 340.3 24.3 295 178-538 505-940 (972)
57 3g5u_A MCG1178, multidrug resi 100.0 1.9E-35 6.6E-40 354.8 22.0 202 334-540 386-613 (1284)
58 1yqt_A RNAse L inhibitor; ATP- 100.0 5.8E-36 2E-40 329.7 14.7 184 337-526 22-234 (538)
59 3bk7_A ABC transporter ATP-bin 100.0 1.1E-35 3.9E-40 330.8 15.9 182 339-526 95-304 (607)
60 4f4c_A Multidrug resistance pr 100.0 7.3E-35 2.5E-39 350.6 22.1 199 335-538 415-639 (1321)
61 1tf7_A KAIC; homohexamer, hexa 100.0 5E-37 1.7E-41 338.2 -0.7 171 333-527 255-444 (525)
62 3j16_B RLI1P; ribosome recycli 100.0 1.6E-33 5.4E-38 313.1 16.0 186 340-527 82-298 (608)
63 3ux8_A Excinuclease ABC, A sub 100.0 1E-32 3.6E-37 312.2 17.6 190 348-539 30-297 (670)
64 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-32 4.5E-37 302.3 12.3 182 340-527 4-214 (538)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 3E-33 1E-37 301.7 -13.0 205 333-550 116-348 (460)
66 4aby_A DNA repair protein RECN 100.0 3.1E-28 1.1E-32 260.1 18.6 76 454-530 296-379 (415)
67 3b85_A Phosphate starvation-in 99.9 3.3E-29 1.1E-33 243.0 -7.7 144 344-515 9-163 (208)
68 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.7E-26 1.6E-30 239.4 13.8 80 449-529 275-363 (365)
69 4gp7_A Metallophosphoesterase; 99.9 4.7E-27 1.6E-31 220.8 2.3 146 354-516 1-165 (171)
70 1ye8_A Protein THEP1, hypothet 99.9 2.3E-26 8E-31 217.6 4.8 156 364-545 2-175 (178)
71 4g1u_C Hemin import ATP-bindin 99.9 2E-23 6.8E-28 209.9 17.0 187 58-247 10-233 (266)
72 3gfo_A Cobalt import ATP-bindi 99.9 3.7E-23 1.3E-27 208.7 16.7 187 58-248 6-230 (275)
73 3fvq_A Fe(3+) IONS import ATP- 99.9 1.8E-23 6.3E-28 217.5 14.6 184 59-245 4-223 (359)
74 3rlf_A Maltose/maltodextrin im 99.9 3.5E-23 1.2E-27 216.9 16.0 178 59-249 3-222 (381)
75 3tui_C Methionine import ATP-b 99.9 8.5E-23 2.9E-27 212.7 18.4 186 58-247 23-249 (366)
76 2pcj_A ABC transporter, lipopr 99.9 1.3E-22 4.5E-27 198.9 18.8 180 59-242 4-220 (224)
77 2olj_A Amino acid ABC transpor 99.9 8.9E-23 3.1E-27 204.6 17.3 187 59-249 24-246 (263)
78 1ji0_A ABC transporter; ATP bi 99.9 1.9E-22 6.6E-27 199.8 19.3 187 58-248 5-225 (240)
79 1e69_A Chromosome segregation 99.9 2.6E-23 8.9E-28 214.9 12.8 88 449-537 215-310 (322)
80 1b0u_A Histidine permease; ABC 99.9 8.5E-23 2.9E-27 204.9 15.7 187 59-249 6-240 (262)
81 1z47_A CYSA, putative ABC-tran 99.9 9.5E-23 3.3E-27 212.2 16.6 178 56-247 11-231 (355)
82 1vpl_A ABC transporter, ATP-bi 99.9 1.7E-22 5.7E-27 201.9 17.6 178 58-249 14-233 (256)
83 2nq2_C Hypothetical ABC transp 99.9 2.7E-22 9.4E-27 200.1 18.7 182 59-249 4-215 (253)
84 2it1_A 362AA long hypothetical 99.9 1.5E-22 5.1E-27 211.4 16.8 175 59-247 3-219 (362)
85 2yyz_A Sugar ABC transporter, 99.9 1.3E-22 4.5E-27 211.6 15.9 172 59-247 3-219 (359)
86 1tq4_A IIGP1, interferon-induc 99.9 2.7E-26 9.3E-31 243.5 -12.4 171 349-527 36-255 (413)
87 3d31_A Sulfate/molybdate ABC t 99.9 2.8E-22 9.7E-27 208.4 17.8 171 59-247 1-213 (348)
88 3tif_A Uncharacterized ABC tra 99.9 5.6E-22 1.9E-26 195.8 18.5 180 59-242 1-226 (235)
89 1g29_1 MALK, maltose transport 99.9 2.5E-22 8.6E-27 210.7 16.8 175 59-247 3-225 (372)
90 1g6h_A High-affinity branched- 99.9 5.2E-23 1.8E-27 206.0 10.9 186 58-248 6-239 (257)
91 1v43_A Sugar-binding transport 99.9 1.9E-22 6.4E-27 211.4 14.6 185 59-247 11-227 (372)
92 1oxx_K GLCV, glucose, ABC tran 99.9 1.8E-22 6.3E-27 210.4 14.0 175 59-247 3-226 (353)
93 2ff7_A Alpha-hemolysin translo 99.9 1.1E-21 3.6E-26 195.2 17.1 186 57-248 5-229 (247)
94 2yz2_A Putative ABC transporte 99.9 1.2E-21 4.2E-26 196.9 16.7 173 59-247 2-223 (266)
95 2ixe_A Antigen peptide transpo 99.9 1.7E-21 5.9E-26 196.3 17.8 173 58-249 15-243 (271)
96 2ihy_A ABC transporter, ATP-bi 99.9 4.9E-22 1.7E-26 201.0 13.3 188 58-248 20-249 (279)
97 2pze_A Cystic fibrosis transme 99.9 3.3E-21 1.1E-25 189.6 16.6 179 59-249 6-216 (229)
98 2pjz_A Hypothetical protein ST 99.9 1.3E-21 4.6E-26 196.1 14.0 168 59-247 1-211 (263)
99 1mv5_A LMRA, multidrug resista 99.9 2.2E-21 7.7E-26 192.5 15.2 171 59-249 1-224 (243)
100 2zu0_C Probable ATP-dependent 99.9 2E-21 7E-26 195.4 15.1 191 57-248 18-251 (267)
101 2v9p_A Replication protein E1; 99.9 2.8E-26 9.7E-31 234.0 -20.7 163 335-538 101-264 (305)
102 3nh6_A ATP-binding cassette SU 99.9 3.2E-21 1.1E-25 197.2 15.7 178 58-249 52-275 (306)
103 3b9q_A Chloroplast SRP recepto 99.9 1.3E-23 4.5E-28 214.9 -2.3 164 353-528 91-284 (302)
104 2onk_A Molybdate/tungstate ABC 99.9 1.7E-21 5.9E-26 192.8 12.7 184 59-249 1-214 (240)
105 2cbz_A Multidrug resistance-as 99.9 2.6E-21 8.9E-26 191.3 13.7 174 59-249 3-215 (237)
106 2d2e_A SUFC protein; ABC-ATPas 99.9 3.8E-21 1.3E-25 191.6 15.0 188 59-247 3-229 (250)
107 3qkt_A DNA double-strand break 99.8 1.1E-20 3.6E-25 196.8 14.5 78 449-527 244-332 (339)
108 1znw_A Guanylate kinase, GMP k 99.8 1.2E-24 4.2E-29 210.4 -15.0 160 349-524 9-202 (207)
109 3aez_A Pantothenate kinase; tr 99.8 2.7E-24 9.3E-29 221.0 -13.3 173 335-526 43-245 (312)
110 2qi9_C Vitamin B12 import ATP- 99.8 3.3E-20 1.1E-24 184.5 16.0 181 59-248 4-219 (249)
111 2ghi_A Transport protein; mult 99.8 2.2E-20 7.5E-25 187.1 14.8 169 59-249 17-240 (260)
112 2pt7_A CAG-ALFA; ATPase, prote 99.8 6.9E-23 2.3E-27 212.3 -3.7 152 350-546 159-310 (330)
113 2og2_A Putative signal recogni 99.8 1.7E-22 5.8E-27 210.7 -1.1 164 353-528 148-341 (359)
114 1sgw_A Putative ABC transporte 99.8 2E-20 6.8E-25 181.9 12.6 166 57-239 8-210 (214)
115 2o8b_B DNA mismatch repair pro 99.8 9.5E-22 3.2E-26 229.8 3.5 166 332-529 747-930 (1022)
116 3gd7_A Fusion complex of cysti 99.8 7.4E-21 2.5E-25 200.5 9.3 188 55-249 15-241 (390)
117 1z6g_A Guanylate kinase; struc 99.8 7.5E-24 2.6E-28 206.9 -12.9 139 350-498 11-172 (218)
118 2dpy_A FLII, flagellum-specifi 99.8 1.7E-22 5.7E-27 216.7 -5.2 174 333-530 129-335 (438)
119 2o5v_A DNA replication and rep 99.8 2E-19 6.9E-24 187.8 14.0 83 450-537 261-353 (359)
120 2i3b_A HCR-ntpase, human cance 99.8 3.9E-21 1.3E-25 183.4 -0.5 157 362-546 1-184 (189)
121 2bbs_A Cystic fibrosis transme 99.8 2E-19 7E-24 182.7 11.8 178 58-249 39-245 (290)
122 3b5x_A Lipid A export ATP-bind 99.8 1.1E-18 3.6E-23 194.4 18.4 172 58-249 340-565 (582)
123 2obl_A ESCN; ATPase, hydrolase 99.8 1.9E-21 6.5E-26 202.5 -3.8 176 333-530 43-246 (347)
124 3sop_A Neuronal-specific septi 99.8 3.1E-22 1.1E-26 201.7 -9.6 138 364-513 4-153 (270)
125 2jeo_A Uridine-cytidine kinase 99.8 1.8E-20 6.2E-25 185.9 1.8 169 347-542 10-189 (245)
126 1ewq_A DNA mismatch repair pro 99.8 6.4E-20 2.2E-24 208.4 5.7 145 334-514 549-702 (765)
127 3thx_A DNA mismatch repair pro 99.8 2.7E-19 9.2E-24 206.7 10.3 155 334-529 630-803 (934)
128 4a82_A Cystic fibrosis transme 99.8 1.1E-18 3.6E-23 194.2 14.0 182 58-249 338-562 (578)
129 3qf4_B Uncharacterized ABC tra 99.8 5.5E-19 1.9E-23 197.2 11.4 183 58-250 353-577 (598)
130 3qf4_A ABC transporter, ATP-bi 99.8 1.4E-18 4.9E-23 193.3 14.6 179 58-250 340-565 (587)
131 2yl4_A ATP-binding cassette SU 99.8 2.6E-18 8.9E-23 191.7 16.4 172 59-248 340-567 (595)
132 1cr0_A DNA primase/helicase; R 99.8 6.9E-20 2.4E-24 186.7 3.2 168 350-528 23-237 (296)
133 3b60_A Lipid A export ATP-bind 99.8 1.3E-18 4.3E-23 193.8 13.4 178 58-249 340-565 (582)
134 2eyu_A Twitching motility prot 99.8 3.3E-20 1.1E-24 185.9 -1.2 136 336-520 6-142 (261)
135 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-21 4E-26 215.6 -13.1 165 336-525 13-209 (525)
136 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.2E-18 7.4E-23 157.7 10.4 78 449-527 53-141 (148)
137 3thx_B DNA mismatch repair pro 99.8 2.3E-19 7.9E-24 206.7 4.7 136 348-514 659-800 (918)
138 3pih_A Uvrabc system protein A 99.7 9.1E-18 3.1E-22 193.3 13.1 105 434-540 445-560 (916)
139 2ehv_A Hypothetical protein PH 99.7 2.6E-18 8.9E-23 169.5 6.7 169 336-524 7-206 (251)
140 4a74_A DNA repair and recombin 99.7 1.5E-17 5.3E-22 161.9 9.8 152 358-526 21-200 (231)
141 3asz_A Uridine kinase; cytidin 99.7 7.1E-20 2.4E-24 176.8 -8.2 140 359-510 3-161 (211)
142 2w0m_A SSO2452; RECA, SSPF, un 99.7 2.3E-17 8E-22 160.5 9.6 163 348-526 8-192 (235)
143 2ygr_A Uvrabc system protein A 99.7 3.2E-17 1.1E-21 188.3 10.8 103 436-540 504-617 (993)
144 2r6f_A Excinuclease ABC subuni 99.7 3.5E-17 1.2E-21 187.3 9.9 102 436-539 487-599 (972)
145 2qnr_A Septin-2, protein NEDD5 99.7 1.4E-19 4.8E-24 185.2 -9.2 155 339-511 2-168 (301)
146 2vf7_A UVRA2, excinuclease ABC 99.7 1E-16 3.6E-21 183.0 10.5 103 436-540 362-475 (842)
147 1wb9_A DNA mismatch repair pro 99.7 1.7E-17 5.9E-22 189.5 3.7 146 348-526 594-745 (800)
148 3jvv_A Twitching mobility prot 99.7 1.4E-17 4.9E-22 173.8 2.2 143 339-523 92-243 (356)
149 1pui_A ENGB, probable GTP-bind 99.6 4.4E-19 1.5E-23 170.5 -9.4 160 335-499 3-196 (210)
150 1nlf_A Regulatory protein REPA 99.6 4.5E-16 1.5E-20 157.2 10.5 146 358-514 26-185 (279)
151 3kta_B Chromosome segregation 99.6 2.3E-15 7.9E-20 141.2 14.4 92 449-541 60-159 (173)
152 1rj9_A FTSY, signal recognitio 99.6 2E-17 6.8E-22 169.2 -0.9 154 361-527 101-284 (304)
153 2qag_C Septin-7; cell cycle, c 99.6 3.7E-17 1.3E-21 173.9 -2.8 158 334-512 10-179 (418)
154 2cvh_A DNA repair and recombin 99.6 6.3E-15 2.2E-19 142.3 13.0 148 350-526 7-185 (220)
155 3szr_A Interferon-induced GTP- 99.6 3.2E-17 1.1E-21 183.0 -4.6 168 334-527 9-225 (608)
156 4ad8_A DNA repair protein RECN 99.6 4.8E-15 1.6E-19 162.6 9.2 77 449-526 392-473 (517)
157 1pzn_A RAD51, DNA repair and r 99.5 3.1E-16 1E-20 163.6 -0.8 146 351-514 119-290 (349)
158 1s96_A Guanylate kinase, GMP k 99.5 8E-16 2.7E-20 150.0 -1.4 145 357-544 11-164 (219)
159 2ewv_A Twitching motility prot 99.5 1.8E-15 6.1E-20 159.1 0.7 112 350-511 126-245 (372)
160 2gza_A Type IV secretion syste 99.5 8E-16 2.7E-20 161.2 -3.9 165 337-548 137-324 (361)
161 2qag_B Septin-6, protein NEDD5 99.5 3.9E-15 1.3E-19 157.9 -1.6 166 335-510 16-219 (427)
162 4aby_A DNA repair protein RECN 99.4 9.7E-14 3.3E-18 147.7 8.9 64 178-242 296-380 (415)
163 3auy_A DNA double-strand break 99.4 3.5E-13 1.2E-17 141.6 12.2 78 449-527 276-363 (371)
164 1n0w_A DNA repair protein RAD5 99.4 9.6E-13 3.3E-17 128.9 13.2 150 358-526 20-209 (243)
165 2bbw_A Adenylate kinase 4, AK4 99.4 2.5E-15 8.7E-20 148.7 -7.3 131 361-500 26-197 (246)
166 1lw7_A Transcriptional regulat 99.4 2.9E-15 9.9E-20 157.2 -7.9 149 352-509 158-328 (365)
167 1zp6_A Hypothetical protein AT 99.4 7.4E-15 2.5E-19 139.0 -6.3 137 358-508 5-158 (191)
168 1w1w_A Structural maintenance 99.4 1.8E-12 6.1E-17 138.9 11.0 75 449-524 329-410 (430)
169 1ls1_A Signal recognition part 99.3 3E-14 1E-18 145.1 -3.1 118 353-499 91-209 (295)
170 1htw_A HI0065; nucleotide-bind 99.3 1.2E-14 4.1E-19 134.3 -6.9 79 339-422 11-95 (158)
171 4gp7_A Metallophosphoesterase; 99.3 3.2E-12 1.1E-16 119.4 9.5 31 77-107 1-31 (171)
172 2npi_A Protein CLP1; CLP1-PCF1 99.3 4.5E-15 1.5E-19 159.9 -11.9 48 57-110 116-163 (460)
173 1udx_A The GTP-binding protein 99.3 2E-13 7E-18 145.0 0.9 139 352-507 147-305 (416)
174 2yhs_A FTSY, cell division pro 99.3 1.1E-13 3.6E-18 148.8 -2.2 163 352-527 283-475 (503)
175 2qm8_A GTPase/ATPase; G protei 99.3 3.1E-15 1.1E-19 155.3 -14.0 156 336-499 30-258 (337)
176 2rcn_A Probable GTPase ENGC; Y 99.3 1.3E-12 4.4E-17 135.8 5.5 111 352-469 206-329 (358)
177 1p9r_A General secretion pathw 99.3 3.5E-15 1.2E-19 158.8 -15.5 135 335-477 143-315 (418)
178 3ec2_A DNA replication protein 99.3 6.6E-13 2.2E-17 124.6 1.8 108 356-510 32-143 (180)
179 2ehv_A Hypothetical protein PH 99.3 1.3E-12 4.4E-17 128.5 3.6 46 59-107 6-52 (251)
180 3e70_C DPA, signal recognition 99.3 3.5E-13 1.2E-17 139.0 -0.6 166 360-542 127-322 (328)
181 2bdt_A BH3686; alpha-beta prot 99.3 3.5E-15 1.2E-19 141.3 -14.7 157 362-538 2-182 (189)
182 1znw_A Guanylate kinase, GMP k 99.3 4.4E-12 1.5E-16 122.0 6.4 36 72-109 9-44 (207)
183 2kjq_A DNAA-related protein; s 99.2 9.5E-12 3.3E-16 113.7 7.6 91 351-509 30-124 (149)
184 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 5.2E-11 1.8E-15 124.7 13.4 63 177-240 279-363 (365)
185 1sxj_E Activator 1 40 kDa subu 99.2 1.5E-11 5.1E-16 127.6 9.1 127 364-512 38-176 (354)
186 3lda_A DNA repair protein RAD5 99.2 4.9E-11 1.7E-15 126.1 12.6 150 358-526 174-363 (400)
187 2obl_A ESCN; ATPase, hydrolase 99.2 1.3E-12 4.4E-17 135.9 -1.5 61 59-122 45-106 (347)
188 3b85_A Phosphate starvation-in 99.2 3.6E-13 1.2E-17 130.1 -5.3 43 69-116 10-52 (208)
189 3c8u_A Fructokinase; YP_612366 99.2 1.7E-13 6E-18 132.0 -8.8 138 359-519 19-168 (208)
190 1nij_A Hypothetical protein YJ 99.2 2E-13 7E-18 140.4 -8.9 129 363-510 5-189 (318)
191 1odf_A YGR205W, hypothetical 3 99.1 1.3E-12 4.3E-17 132.7 -3.3 119 361-487 30-168 (290)
192 2f1r_A Molybdopterin-guanine d 99.1 2E-13 6.8E-18 127.8 -8.6 122 363-498 3-158 (171)
193 2oap_1 GSPE-2, type II secreti 99.1 8.1E-14 2.8E-18 152.0 -13.5 157 350-518 248-458 (511)
194 2dpy_A FLII, flagellum-specifi 99.1 9.3E-12 3.2E-16 133.3 0.3 63 58-123 130-193 (438)
195 2o8b_B DNA mismatch repair pro 99.1 3.1E-11 1E-15 141.3 2.9 51 57-108 748-811 (1022)
196 2px0_A Flagellar biosynthesis 99.1 2.5E-10 8.5E-15 116.1 9.1 137 360-530 103-246 (296)
197 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1E-13 3.5E-18 146.0 -16.7 155 359-538 17-211 (392)
198 2yv5_A YJEQ protein; hydrolase 99.0 1.1E-11 3.8E-16 126.5 -1.6 105 360-466 163-300 (302)
199 1sq5_A Pantothenate kinase; P- 99.0 7.5E-13 2.6E-17 135.6 -10.4 131 335-485 37-198 (308)
200 4a74_A DNA repair and recombin 99.0 2.3E-10 7.8E-15 110.8 7.6 29 81-109 21-49 (231)
201 1lvg_A Guanylate kinase, GMP k 99.0 6.4E-14 2.2E-18 134.2 -17.7 138 360-523 2-171 (198)
202 1in4_A RUVB, holliday junction 99.0 1.5E-13 5.2E-18 142.3 -16.7 158 337-518 20-210 (334)
203 1cr0_A DNA primase/helicase; R 99.0 1.8E-10 6.3E-15 116.7 6.3 53 71-125 21-74 (296)
204 1vma_A Cell division protein F 99.0 2.1E-10 7.1E-15 117.1 6.6 98 355-482 97-197 (306)
205 1htw_A HI0065; nucleotide-bind 99.0 4.3E-12 1.5E-16 117.1 -6.0 49 61-109 9-57 (158)
206 2pt7_A CAG-ALFA; ATPase, prote 99.0 2.1E-12 7.3E-17 133.5 -9.1 45 74-120 160-204 (330)
207 2w0m_A SSO2452; RECA, SSPF, un 99.0 2.5E-10 8.6E-15 110.5 5.6 53 71-125 8-61 (235)
208 3thx_A DNA mismatch repair pro 99.0 5.7E-10 1.9E-14 129.2 8.2 48 59-106 631-683 (934)
209 3euj_A Chromosome partition pr 98.9 3.9E-10 1.3E-14 121.5 4.7 45 350-395 18-62 (483)
210 1ye8_A Protein THEP1, hypothet 98.9 9.8E-10 3.4E-14 103.3 6.3 35 196-230 104-152 (178)
211 2v9p_A Replication protein E1; 98.9 3.1E-11 1.1E-15 122.9 -5.8 49 59-108 101-149 (305)
212 2x8a_A Nuclear valosin-contain 98.9 5E-13 1.7E-17 134.6 -19.2 138 348-498 32-192 (274)
213 2dr3_A UPF0273 protein PH0284; 98.9 1.6E-08 5.5E-13 98.7 13.5 157 351-525 11-196 (247)
214 2r6a_A DNAB helicase, replicat 98.9 2.6E-09 9E-14 115.0 8.2 161 350-528 191-401 (454)
215 1u0l_A Probable GTPase ENGC; p 98.9 5.5E-11 1.9E-15 121.3 -4.8 98 358-456 165-294 (301)
216 3b9q_A Chloroplast SRP recepto 98.8 1.3E-09 4.4E-14 111.1 4.0 49 75-125 90-138 (302)
217 1t9h_A YLOQ, probable GTPase E 98.8 2.3E-10 7.8E-15 116.7 -2.6 100 359-460 170-302 (307)
218 1wb9_A DNA mismatch repair pro 98.8 1.7E-09 5.8E-14 123.7 3.1 49 59-108 577-630 (800)
219 3thx_B DNA mismatch repair pro 98.8 2.5E-09 8.5E-14 123.5 3.9 49 59-107 640-695 (918)
220 1z6g_A Guanylate kinase; struc 98.8 2.4E-09 8.3E-14 103.8 3.1 36 73-108 11-46 (218)
221 1e69_A Chromosome segregation 98.8 1.6E-08 5.5E-13 103.9 9.4 70 177-247 219-309 (322)
222 2jeo_A Uridine-cytidine kinase 98.7 2.9E-09 1E-13 104.9 3.1 40 69-108 9-48 (245)
223 3lnc_A Guanylate kinase, GMP k 98.7 3.4E-09 1.2E-13 103.3 2.2 39 350-388 15-54 (231)
224 2ius_A DNA translocase FTSK; n 98.7 3.1E-10 1.1E-14 123.0 -6.7 166 354-522 159-361 (512)
225 2og2_A Putative signal recogni 98.7 8.2E-09 2.8E-13 107.4 4.3 48 76-125 148-195 (359)
226 2cvh_A DNA repair and recombin 98.7 4.8E-08 1.7E-12 93.6 9.1 48 73-125 7-55 (220)
227 3jvv_A Twitching mobility prot 98.7 2.8E-09 9.7E-14 111.0 0.2 52 73-125 104-162 (356)
228 3qkt_A DNA double-strand break 98.6 4.2E-08 1.4E-12 101.5 8.7 31 75-106 14-44 (339)
229 2zr9_A Protein RECA, recombina 98.6 1.1E-07 3.7E-12 98.8 11.6 136 358-526 57-230 (349)
230 3k1j_A LON protease, ATP-depen 98.6 2.3E-09 8E-14 119.5 -1.3 151 342-498 41-227 (604)
231 1oix_A RAS-related protein RAB 98.6 1.4E-08 4.9E-13 95.7 4.3 37 460-498 152-188 (191)
232 2qag_B Septin-6, protein NEDD5 98.6 2.3E-09 7.9E-14 113.6 -1.4 51 57-109 14-66 (427)
233 1qhl_A Protein (cell division 98.6 9.5E-10 3.2E-14 107.3 -4.4 53 335-396 9-61 (227)
234 3aez_A Pantothenate kinase; tr 98.6 1.3E-09 4.4E-14 111.6 -4.3 69 59-129 43-134 (312)
235 3nwj_A ATSK2; P loop, shikimat 98.6 2.7E-09 9.2E-14 105.7 -2.0 54 333-386 15-72 (250)
236 1svm_A Large T antigen; AAA+ f 98.6 1.2E-10 3.9E-15 122.3 -12.9 129 350-482 157-312 (377)
237 1iy2_A ATP-dependent metallopr 98.6 5.9E-12 2E-16 126.7 -22.2 127 337-481 51-195 (278)
238 2e87_A Hypothetical protein PH 98.6 6.2E-08 2.1E-12 101.0 7.4 119 364-511 169-293 (357)
239 1n0w_A DNA repair protein RAD5 98.6 1.9E-07 6.4E-12 90.9 10.3 45 81-125 20-68 (243)
240 3nwj_A ATSK2; P loop, shikimat 98.6 3.3E-09 1.1E-13 105.1 -2.4 51 58-108 16-71 (250)
241 3kta_A Chromosome segregation 98.5 6.6E-08 2.3E-12 90.2 6.0 108 351-463 14-152 (182)
242 3euj_A Chromosome partition pr 98.5 3.8E-08 1.3E-12 106.0 4.0 71 450-523 376-463 (483)
243 2qm8_A GTPase/ATPase; G protei 98.5 2.2E-09 7.4E-14 111.2 -6.5 65 59-125 29-93 (337)
244 2eyu_A Twitching motility prot 98.5 7.1E-09 2.4E-13 103.4 -2.5 58 60-125 6-64 (261)
245 3tr0_A Guanylate kinase, GMP k 98.5 4.2E-08 1.5E-12 93.1 3.0 32 356-387 1-32 (205)
246 1sq5_A Pantothenate kinase; P- 98.5 3.8E-09 1.3E-13 107.9 -4.9 63 59-123 37-118 (308)
247 3lnc_A Guanylate kinase, GMP k 98.5 4.4E-08 1.5E-12 95.4 2.3 36 73-108 15-51 (231)
248 1jjv_A Dephospho-COA kinase; P 98.4 1.1E-07 3.7E-12 90.7 4.4 125 364-524 4-131 (206)
249 3tr0_A Guanylate kinase, GMP k 98.4 8.7E-08 3E-12 91.0 3.6 30 79-108 1-30 (205)
250 2ce7_A Cell division protein F 98.4 1.7E-07 5.7E-12 101.2 6.0 113 350-514 39-168 (476)
251 1ypw_A Transitional endoplasmi 98.4 3.8E-08 1.3E-12 113.2 1.0 33 355-387 504-536 (806)
252 1nlf_A Regulatory protein REPA 98.4 2.9E-07 1E-11 92.3 7.2 28 81-108 26-53 (279)
253 2qag_C Septin-7; cell cycle, c 98.4 9E-08 3.1E-12 101.6 3.4 47 59-111 11-57 (418)
254 1pui_A ENGB, probable GTP-bind 98.4 2.1E-08 7.2E-13 95.4 -1.6 48 59-109 3-50 (210)
255 2f9l_A RAB11B, member RAS onco 98.4 1.3E-07 4.3E-12 89.6 3.3 35 462-498 130-164 (199)
256 3szr_A Interferon-induced GTP- 98.4 8.2E-09 2.8E-13 115.0 -5.8 49 58-109 9-69 (608)
257 2gza_A Type IV secretion syste 98.3 2.5E-08 8.6E-13 104.1 -2.8 48 61-108 137-198 (361)
258 3a00_A Guanylate kinase, GMP k 98.3 1.3E-07 4.5E-12 88.9 2.3 30 362-391 1-30 (186)
259 2xau_A PRE-mRNA-splicing facto 98.3 2.8E-07 9.7E-12 105.4 5.3 146 359-519 106-261 (773)
260 1fnn_A CDC6P, cell division co 98.3 3.5E-06 1.2E-10 87.6 12.3 124 364-517 46-176 (389)
261 3lda_A DNA repair protein RAD5 98.3 1.6E-06 5.4E-11 91.5 9.5 45 81-125 174-222 (400)
262 3kta_A Chromosome segregation 98.3 4.7E-07 1.6E-11 84.4 4.8 44 62-108 4-49 (182)
263 1tq4_A IIGP1, interferon-induc 98.3 6.4E-08 2.2E-12 102.5 -1.3 38 72-109 36-93 (413)
264 2j41_A Guanylate kinase; GMP, 98.3 3.4E-07 1.2E-11 86.9 3.9 35 357-391 1-35 (207)
265 2qtf_A Protein HFLX, GTP-bindi 98.3 1.7E-06 6E-11 90.2 9.4 127 364-498 181-350 (364)
266 3t34_A Dynamin-related protein 98.3 1.1E-06 3.9E-11 91.4 7.4 155 350-508 25-212 (360)
267 2yhs_A FTSY, cell division pro 98.2 2.4E-07 8.2E-12 99.6 1.4 49 75-125 283-331 (503)
268 4a1f_A DNAB helicase, replicat 98.2 1.3E-06 4.3E-11 90.1 6.5 123 351-507 35-163 (338)
269 1pzn_A RAD51, DNA repair and r 98.2 5.3E-07 1.8E-11 93.6 3.5 39 71-109 116-155 (349)
270 2dr3_A UPF0273 protein PH0284; 98.2 4.3E-06 1.5E-10 81.3 9.6 51 73-125 10-61 (247)
271 3uie_A Adenylyl-sulfate kinase 98.2 9.4E-08 3.2E-12 90.9 -2.5 52 340-393 4-55 (200)
272 2qnr_A Septin-2, protein NEDD5 98.2 4.9E-07 1.7E-11 91.9 2.6 40 63-108 2-41 (301)
273 1zp6_A Hypothetical protein AT 98.2 6.4E-07 2.2E-11 84.0 3.2 28 81-108 5-32 (191)
274 1p9r_A General secretion pathw 98.2 8.6E-08 2.9E-12 101.8 -3.3 64 59-126 143-206 (418)
275 3uie_A Adenylyl-sulfate kinase 98.2 1.9E-07 6.6E-12 88.8 -0.7 47 63-109 3-49 (200)
276 3vaa_A Shikimate kinase, SK; s 98.2 8.6E-07 3E-11 84.1 3.7 37 72-108 12-48 (199)
277 1s96_A Guanylate kinase, GMP k 98.1 9.6E-07 3.3E-11 85.5 3.7 31 79-109 10-40 (219)
278 1ewq_A DNA mismatch repair pro 98.1 9.7E-07 3.3E-11 100.4 4.1 47 59-108 550-599 (765)
279 3hr8_A Protein RECA; alpha and 98.1 2E-05 6.9E-10 81.7 13.6 35 358-392 57-91 (356)
280 3asz_A Uridine kinase; cytidin 98.1 8.9E-07 3.1E-11 84.5 3.1 40 82-126 3-42 (211)
281 3vaa_A Shikimate kinase, SK; s 98.1 1.1E-06 3.8E-11 83.4 3.4 38 349-386 12-49 (199)
282 1kgd_A CASK, peripheral plasma 98.1 8.1E-07 2.8E-11 83.0 2.3 34 360-393 3-37 (180)
283 3c8u_A Fructokinase; YP_612366 98.1 9.8E-07 3.3E-11 84.4 2.9 28 82-109 19-46 (208)
284 4e22_A Cytidylate kinase; P-lo 98.1 5E-07 1.7E-11 89.4 0.7 35 360-394 25-62 (252)
285 1lvg_A Guanylate kinase, GMP k 98.1 1.1E-06 3.6E-11 83.7 2.8 26 83-108 2-27 (198)
286 2j41_A Guanylate kinase; GMP, 98.1 1.9E-06 6.6E-11 81.6 4.0 30 80-109 1-30 (207)
287 1w1w_A Structural maintenance 98.0 1.8E-06 6.2E-11 92.0 3.4 49 336-391 7-55 (430)
288 2i3b_A HCR-ntpase, human cance 98.0 1.8E-06 6E-11 81.7 2.9 25 85-109 1-25 (189)
289 1qhl_A Protein (cell division 98.0 1.3E-07 4.5E-12 92.1 -5.2 44 58-109 8-51 (227)
290 4eun_A Thermoresistant glucoki 98.0 2.5E-06 8.5E-11 81.0 3.7 36 73-108 17-52 (200)
291 4eun_A Thermoresistant glucoki 98.0 2E-06 7E-11 81.6 3.0 35 357-395 24-58 (200)
292 2o5v_A DNA replication and rep 98.0 2.9E-06 9.8E-11 88.3 4.3 44 61-107 5-48 (359)
293 3a00_A Guanylate kinase, GMP k 98.0 2.1E-06 7E-11 80.6 2.8 24 85-108 1-24 (186)
294 2qby_A CDC6 homolog 1, cell di 98.0 2.6E-06 8.7E-11 88.3 3.7 129 360-516 43-179 (386)
295 1lw7_A Transcriptional regulat 98.0 9.3E-07 3.2E-11 92.3 0.1 35 75-109 158-194 (365)
296 1rj9_A FTSY, signal recognitio 98.0 3.7E-06 1.3E-10 85.5 3.9 41 84-126 101-141 (304)
297 1kgd_A CASK, peripheral plasma 97.9 3.9E-06 1.3E-10 78.3 3.7 25 84-108 4-28 (180)
298 3tqc_A Pantothenate kinase; bi 97.9 2.6E-07 8.8E-12 94.7 -4.9 132 341-486 66-211 (321)
299 3tqc_A Pantothenate kinase; bi 97.9 3.6E-07 1.2E-11 93.5 -3.8 63 64-126 65-133 (321)
300 1v5w_A DMC1, meiotic recombina 97.9 2.8E-05 9.6E-10 80.4 9.8 135 358-511 118-275 (343)
301 3tau_A Guanylate kinase, GMP k 97.9 5E-06 1.7E-10 79.5 3.8 29 360-388 6-34 (208)
302 2oap_1 GSPE-2, type II secreti 97.9 1.3E-06 4.5E-11 95.1 -0.5 37 72-108 247-283 (511)
303 1ega_A Protein (GTP-binding pr 97.9 1.7E-07 5.9E-12 95.3 -7.1 145 362-518 8-167 (301)
304 2x8a_A Nuclear valosin-contain 97.9 1E-06 3.5E-11 88.3 -1.4 38 69-108 30-67 (274)
305 1ixz_A ATP-dependent metallopr 97.9 3.6E-07 1.2E-11 90.1 -4.9 55 336-395 26-80 (254)
306 1ixz_A ATP-dependent metallopr 97.9 4E-07 1.4E-11 89.7 -4.8 47 60-108 26-72 (254)
307 1in4_A RUVB, holliday junction 97.9 3E-07 1E-11 94.8 -6.1 49 60-108 19-74 (334)
308 3ney_A 55 kDa erythrocyte memb 97.9 4.6E-06 1.6E-10 79.3 2.6 31 357-387 14-44 (197)
309 1rz3_A Hypothetical protein rb 97.9 3.4E-06 1.2E-10 80.2 1.6 36 359-394 19-54 (201)
310 3e70_C DPA, signal recognition 97.9 4.9E-06 1.7E-10 85.5 2.9 42 83-126 127-168 (328)
311 3kl4_A SRP54, signal recogniti 97.8 3.8E-05 1.3E-09 81.6 9.5 111 361-498 96-209 (433)
312 1iy2_A ATP-dependent metallopr 97.8 5.3E-07 1.8E-11 90.3 -4.8 46 61-108 51-96 (278)
313 3sop_A Neuronal-specific septi 97.8 4.7E-06 1.6E-10 83.3 2.0 23 87-109 4-26 (270)
314 2bdt_A BH3686; alpha-beta prot 97.8 6.2E-06 2.1E-10 77.2 2.6 30 210-241 145-175 (189)
315 3ec2_A DNA replication protein 97.8 3.5E-06 1.2E-10 78.4 0.8 31 79-109 32-62 (180)
316 1svm_A Large T antigen; AAA+ f 97.8 2.5E-06 8.4E-11 89.3 -0.3 36 73-108 157-192 (377)
317 2vp4_A Deoxynucleoside kinase; 97.8 6.3E-06 2.1E-10 80.1 2.4 34 358-395 16-49 (230)
318 4e22_A Cytidylate kinase; P-lo 97.8 7.9E-06 2.7E-10 80.6 3.2 24 83-106 25-48 (252)
319 1zu4_A FTSY; GTPase, signal re 97.8 3.3E-06 1.1E-10 86.5 0.3 43 352-394 95-137 (320)
320 3bh0_A DNAB-like replicative h 97.8 1.9E-05 6.6E-10 80.5 5.6 129 350-508 56-189 (315)
321 2z4s_A Chromosomal replication 97.8 9.5E-06 3.3E-10 86.8 3.4 41 470-510 193-237 (440)
322 2bbw_A Adenylate kinase 4, AK4 97.8 1.2E-05 4.1E-10 78.8 3.7 25 84-108 26-53 (246)
323 3ice_A Transcription terminati 97.8 2.9E-06 9.9E-11 88.1 -0.8 52 335-386 133-198 (422)
324 1kag_A SKI, shikimate kinase I 97.8 9.3E-06 3.2E-10 74.6 2.7 28 361-388 3-30 (173)
325 3lxx_A GTPase IMAP family memb 97.8 0.0001 3.6E-09 71.5 10.4 117 364-510 31-157 (239)
326 2z43_A DNA repair and recombin 97.7 6.3E-05 2.1E-09 77.0 9.1 135 358-511 103-259 (324)
327 3b9p_A CG5977-PA, isoform A; A 97.7 0.00012 4.1E-09 73.4 10.9 101 361-511 53-170 (297)
328 1udx_A The GTP-binding protein 97.7 1.2E-05 4.2E-10 85.1 3.1 34 75-108 147-180 (416)
329 2dy1_A Elongation factor G; tr 97.7 1.7E-05 5.8E-10 89.2 4.4 134 356-512 3-138 (665)
330 3tau_A Guanylate kinase, GMP k 97.7 1.7E-05 5.7E-10 75.8 3.6 26 83-108 6-31 (208)
331 1kag_A SKI, shikimate kinase I 97.7 1.5E-05 5.1E-10 73.2 3.0 25 84-108 3-27 (173)
332 2ewv_A Twitching motility prot 97.7 6.5E-06 2.2E-10 86.1 0.5 49 74-125 127-175 (372)
333 1u0l_A Probable GTPase ENGC; p 97.7 1.9E-05 6.5E-10 80.1 3.9 30 81-110 165-194 (301)
334 1knq_A Gluconate kinase; ALFA/ 97.7 1.7E-05 5.8E-10 73.1 3.2 26 83-108 6-31 (175)
335 2r6a_A DNAB helicase, replicat 97.6 2.2E-05 7.4E-10 84.4 4.0 54 71-125 189-242 (454)
336 2vp4_A Deoxynucleoside kinase; 97.6 1.4E-05 4.9E-10 77.5 2.3 28 81-108 16-43 (230)
337 2qt1_A Nicotinamide riboside k 97.6 2E-05 6.9E-10 74.9 3.3 30 358-387 17-46 (207)
338 2rcn_A Probable GTPase ENGC; Y 97.6 3E-05 1E-09 80.4 4.7 27 84-110 214-240 (358)
339 1knq_A Gluconate kinase; ALFA/ 97.6 1.6E-05 5.4E-10 73.3 2.5 27 360-386 6-32 (175)
340 2kjq_A DNAA-related protein; s 97.6 1.6E-05 5.5E-10 72.0 2.4 38 84-123 35-72 (149)
341 2p67_A LAO/AO transport system 97.6 5.6E-07 1.9E-11 93.1 -8.4 53 340-393 35-87 (341)
342 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 2.6E-05 8.8E-10 70.7 3.4 31 353-384 15-45 (149)
343 3cr8_A Sulfate adenylyltranfer 97.6 9.3E-06 3.2E-10 89.1 0.4 37 358-394 365-402 (552)
344 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.5E-05 1.2E-09 69.8 3.8 29 77-106 16-44 (149)
345 3ice_A Transcription terminati 97.6 1.1E-05 3.9E-10 83.7 0.1 49 59-107 133-196 (422)
346 1t9h_A YLOQ, probable GTPase E 97.5 6.5E-06 2.2E-10 83.7 -1.8 30 80-109 168-197 (307)
347 3ney_A 55 kDa erythrocyte memb 97.5 3.4E-05 1.2E-09 73.3 3.2 29 80-108 14-42 (197)
348 1cke_A CK, MSSA, protein (cyti 97.5 1.4E-05 4.8E-10 76.8 0.0 34 362-395 5-41 (227)
349 2wji_A Ferrous iron transport 97.5 0.0006 2.1E-08 61.8 11.0 24 364-387 5-28 (165)
350 1ls1_A Signal recognition part 97.5 1.3E-05 4.3E-10 81.2 -0.6 60 60-125 77-136 (295)
351 2yv5_A YJEQ protein; hydrolase 97.5 7.1E-05 2.4E-09 75.9 4.7 26 83-109 163-188 (302)
352 4eaq_A DTMP kinase, thymidylat 97.4 4E-05 1.4E-09 74.5 2.2 41 352-393 13-56 (229)
353 1rz3_A Hypothetical protein rb 97.4 4.5E-05 1.5E-09 72.3 2.5 42 82-125 19-60 (201)
354 2qt1_A Nicotinamide riboside k 97.4 3.9E-05 1.3E-09 72.8 2.0 28 81-108 17-44 (207)
355 1ypw_A Transitional endoplasmi 97.4 9.1E-05 3.1E-09 85.1 5.2 32 357-388 233-264 (806)
356 1u94_A RECA protein, recombina 97.4 0.00046 1.6E-08 71.6 9.5 120 358-510 59-200 (356)
357 1zu4_A FTSY; GTPase, signal re 97.4 3.7E-05 1.3E-09 78.6 1.1 49 75-125 95-143 (320)
358 3cf0_A Transitional endoplasmi 97.4 0.00042 1.4E-08 69.9 8.9 29 358-386 45-73 (301)
359 1cke_A CK, MSSA, protein (cyti 97.3 9.4E-05 3.2E-09 71.0 3.5 24 85-108 5-28 (227)
360 2www_A Methylmalonic aciduria 97.3 5.9E-05 2E-09 78.1 2.0 34 361-394 73-106 (349)
361 2pez_A Bifunctional 3'-phospho 97.3 5.1E-05 1.7E-09 70.3 1.3 31 360-391 3-33 (179)
362 2f1r_A Molybdopterin-guanine d 97.3 5.1E-05 1.7E-09 70.4 1.2 23 86-108 3-25 (171)
363 1jjv_A Dephospho-COA kinase; P 97.3 0.00012 4.1E-09 69.3 3.4 22 87-108 4-25 (206)
364 3qks_A DNA double-strand break 97.3 0.00013 4.3E-09 69.6 3.4 29 354-383 16-44 (203)
365 1f6b_A SAR1; gtpases, N-termin 97.2 7.8E-05 2.7E-09 70.2 1.8 43 342-385 6-48 (198)
366 1oix_A RAS-related protein RAB 97.2 0.00012 4.2E-09 68.4 3.2 24 87-110 31-54 (191)
367 2ius_A DNA translocase FTSK; n 97.2 0.00067 2.3E-08 73.5 9.2 31 77-107 159-189 (512)
368 2pez_A Bifunctional 3'-phospho 97.2 0.00014 4.6E-09 67.4 3.3 26 83-108 3-28 (179)
369 3qks_A DNA double-strand break 97.2 0.00016 5.5E-09 68.8 3.8 29 77-106 16-44 (203)
370 2p67_A LAO/AO transport system 97.2 6.1E-06 2.1E-10 85.3 -6.7 48 61-108 32-79 (341)
371 1vma_A Cell division protein F 97.2 7.7E-05 2.6E-09 75.8 1.5 46 78-125 97-142 (306)
372 2if2_A Dephospho-COA kinase; a 97.2 0.00012 4.2E-09 69.0 2.8 21 87-107 3-23 (204)
373 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.7E-09 67.9 2.9 32 77-108 2-33 (184)
374 4eaq_A DTMP kinase, thymidylat 97.2 0.00014 4.8E-09 70.6 3.0 34 75-108 13-49 (229)
375 2f9l_A RAB11B, member RAS onco 97.2 0.00016 5.3E-09 68.0 3.2 23 87-109 7-29 (199)
376 2qag_A Septin-2, protein NEDD5 97.2 3.3E-05 1.1E-09 80.4 -1.8 51 335-392 17-67 (361)
377 3m6a_A ATP-dependent protease 97.2 5.2E-05 1.8E-09 83.2 -0.3 56 337-394 85-140 (543)
378 3cr8_A Sulfate adenylyltranfer 97.1 7.9E-05 2.7E-09 81.7 0.8 29 81-109 365-393 (552)
379 4fcw_A Chaperone protein CLPB; 97.1 0.0006 2E-08 68.5 7.1 98 363-499 48-146 (311)
380 2q6t_A DNAB replication FORK h 97.1 0.0012 4E-08 70.5 9.6 130 350-508 188-318 (444)
381 2if2_A Dephospho-COA kinase; a 97.1 0.00017 5.9E-09 68.0 2.7 21 364-384 3-23 (204)
382 4ad8_A DNA repair protein RECN 97.1 9.4E-05 3.2E-09 80.7 0.8 34 73-107 49-82 (517)
383 3k1j_A LON protease, ATP-depen 97.1 4.8E-05 1.7E-09 84.6 -1.6 46 64-109 39-84 (604)
384 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.00016 5.4E-09 75.9 2.3 29 81-109 16-44 (392)
385 1m7g_A Adenylylsulfate kinase; 97.1 0.0001 3.4E-09 70.3 0.7 33 359-391 22-54 (211)
386 1nij_A Hypothetical protein YJ 97.1 0.00022 7.4E-09 72.8 3.0 23 86-108 5-27 (318)
387 2qor_A Guanylate kinase; phosp 97.1 0.00022 7.4E-09 67.6 2.8 28 81-108 8-35 (204)
388 1y63_A LMAJ004144AAA protein; 97.1 0.00023 7.9E-09 66.3 2.9 32 354-385 2-33 (184)
389 1l8q_A Chromosomal replication 97.1 0.00067 2.3E-08 69.0 6.6 28 362-389 37-64 (324)
390 2ffh_A Protein (FFH); SRP54, s 97.0 0.00017 5.7E-09 76.5 2.0 40 353-394 91-130 (425)
391 2i1q_A DNA repair and recombin 97.0 0.0014 4.7E-08 66.7 8.7 27 358-384 94-120 (322)
392 2dhr_A FTSH; AAA+ protein, hex 97.0 3E-05 1E-09 84.0 -3.9 46 61-108 42-87 (499)
393 3bos_A Putative DNA replicatio 97.0 0.00056 1.9E-08 65.5 5.3 89 361-509 51-147 (242)
394 2gj8_A MNME, tRNA modification 97.0 0.00032 1.1E-08 64.3 3.3 26 361-386 3-28 (172)
395 2yvu_A Probable adenylyl-sulfa 97.0 0.0002 7E-09 66.6 1.9 34 360-393 11-44 (186)
396 1m2o_B GTP-binding protein SAR 97.0 0.00038 1.3E-08 64.8 3.6 34 350-384 12-45 (190)
397 2gj8_A MNME, tRNA modification 97.0 0.00031 1E-08 64.5 2.8 26 84-109 3-28 (172)
398 3m6a_A ATP-dependent protease 96.9 3.2E-05 1.1E-09 85.0 -4.8 46 62-108 86-131 (543)
399 1odf_A YGR205W, hypothetical 3 96.9 0.00037 1.3E-08 70.2 3.2 25 84-108 30-54 (290)
400 3llm_A ATP-dependent RNA helic 96.9 4.5E-05 1.5E-09 74.1 -3.6 142 360-516 74-226 (235)
401 2px0_A Flagellar biosynthesis 96.9 0.00038 1.3E-08 70.3 3.1 42 83-125 103-144 (296)
402 3auy_A DNA double-strand break 96.9 0.00066 2.3E-08 70.7 5.0 44 60-106 3-46 (371)
403 1sxj_C Activator 1 40 kDa subu 96.9 6.9E-05 2.4E-09 77.0 -2.5 45 347-391 29-75 (340)
404 2qor_A Guanylate kinase; phosp 96.9 0.00044 1.5E-08 65.5 3.2 29 359-387 9-37 (204)
405 1j8m_F SRP54, signal recogniti 96.9 0.00012 4E-09 74.1 -0.8 40 353-393 89-129 (297)
406 2zej_A Dardarin, leucine-rich 96.9 0.0005 1.7E-08 63.6 3.5 28 364-391 4-31 (184)
407 1sxj_C Activator 1 40 kDa subu 96.9 5.4E-05 1.8E-09 77.8 -3.5 44 65-108 24-69 (340)
408 1f6b_A SAR1; gtpases, N-termin 96.9 8.4E-05 2.9E-09 70.0 -2.1 43 66-109 6-49 (198)
409 3h4m_A Proteasome-activating n 96.9 0.0017 5.8E-08 64.4 7.4 27 360-386 49-75 (285)
410 2qag_A Septin-2, protein NEDD5 96.8 9.7E-05 3.3E-09 76.8 -1.9 45 59-109 17-61 (361)
411 3bh0_A DNAB-like replicative h 96.8 0.003 1E-07 64.2 9.3 53 71-125 54-106 (315)
412 3t61_A Gluconokinase; PSI-biol 96.8 0.00045 1.5E-08 65.1 2.9 24 85-108 18-41 (202)
413 3cm0_A Adenylate kinase; ATP-b 96.8 0.00047 1.6E-08 63.8 2.9 24 84-107 3-26 (186)
414 3lxw_A GTPase IMAP family memb 96.8 0.0016 5.5E-08 63.7 7.0 24 364-387 23-46 (247)
415 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00024 8.3E-09 76.9 1.0 53 337-394 42-94 (499)
416 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00055 1.9E-08 71.8 3.7 37 359-395 19-66 (396)
417 1q3t_A Cytidylate kinase; nucl 96.8 0.00063 2.1E-08 66.0 3.6 27 82-108 13-39 (236)
418 1sxj_D Activator 1 41 kDa subu 96.8 0.00025 8.6E-09 72.5 0.7 40 471-511 133-174 (353)
419 2wji_A Ferrous iron transport 96.8 0.00068 2.3E-08 61.4 3.4 23 87-109 5-27 (165)
420 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00014 4.9E-09 74.9 -1.4 36 73-108 10-47 (359)
421 2yvu_A Probable adenylyl-sulfa 96.7 0.00068 2.3E-08 63.0 3.3 26 83-108 11-36 (186)
422 1m2o_B GTP-binding protein SAR 96.7 0.0006 2.1E-08 63.5 2.9 36 73-109 12-47 (190)
423 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00013 4.3E-09 75.3 -2.0 38 350-387 10-49 (359)
424 1mky_A Probable GTP-binding pr 96.7 0.001 3.6E-08 70.8 5.0 24 364-387 182-205 (439)
425 3t61_A Gluconokinase; PSI-biol 96.7 0.00061 2.1E-08 64.2 2.8 25 362-386 18-42 (202)
426 1njg_A DNA polymerase III subu 96.7 0.0029 9.9E-08 60.0 7.6 41 470-511 125-167 (250)
427 2ffh_A Protein (FFH); SRP54, s 96.7 0.00026 8.9E-09 75.0 0.1 59 61-125 78-136 (425)
428 1lv7_A FTSH; alpha/beta domain 96.7 0.00048 1.7E-08 67.5 2.0 33 74-108 36-68 (257)
429 2v1u_A Cell division control p 96.7 0.0015 5.3E-08 67.2 5.9 127 360-511 42-178 (387)
430 1xp8_A RECA protein, recombina 96.7 0.0065 2.2E-07 63.1 10.6 28 358-385 70-97 (366)
431 3t34_A Dynamin-related protein 96.7 0.00067 2.3E-08 70.3 2.9 36 72-110 24-59 (360)
432 1f2t_B RAD50 ABC-ATPase; DNA d 96.7 0.0022 7.6E-08 57.8 5.9 61 177-238 57-141 (148)
433 3hr8_A Protein RECA; alpha and 96.7 0.00079 2.7E-08 69.7 3.3 45 81-127 57-101 (356)
434 3cm0_A Adenylate kinase; ATP-b 96.6 0.00074 2.5E-08 62.4 2.8 26 360-385 2-27 (186)
435 1m7g_A Adenylylsulfate kinase; 96.6 0.00064 2.2E-08 64.7 2.3 28 81-108 21-48 (211)
436 2wjg_A FEOB, ferrous iron tran 96.6 0.00096 3.3E-08 61.4 3.3 22 364-385 9-30 (188)
437 3kb2_A SPBC2 prophage-derived 96.6 0.00099 3.4E-08 60.5 3.3 22 87-108 3-24 (173)
438 2zej_A Dardarin, leucine-rich 96.6 0.00097 3.3E-08 61.6 3.2 22 87-108 4-25 (184)
439 1qhx_A CPT, protein (chloramph 96.6 0.0012 4.1E-08 60.5 3.7 24 85-108 3-26 (178)
440 1q3t_A Cytidylate kinase; nucl 96.6 0.001 3.4E-08 64.5 3.3 27 360-386 14-40 (236)
441 1ega_A Protein (GTP-binding pr 96.6 0.0006 2E-08 68.9 1.6 26 85-110 8-33 (301)
442 3bgw_A DNAB-like replicative h 96.6 0.0074 2.5E-07 64.3 10.1 124 351-506 186-316 (444)
443 2www_A Methylmalonic aciduria 96.5 0.00098 3.4E-08 68.9 3.2 40 84-125 73-112 (349)
444 2wjg_A FEOB, ferrous iron tran 96.5 0.0012 4E-08 60.8 3.4 22 87-108 9-30 (188)
445 1np6_A Molybdopterin-guanine d 96.5 0.00075 2.6E-08 62.6 1.7 27 362-388 6-32 (174)
446 3dm5_A SRP54, signal recogniti 96.5 0.017 5.7E-07 61.4 12.1 28 361-388 99-126 (443)
447 1kht_A Adenylate kinase; phosp 96.4 0.0016 5.6E-08 60.1 3.7 23 85-107 3-25 (192)
448 4dcu_A GTP-binding protein ENG 96.4 0.0038 1.3E-07 66.7 7.0 58 457-514 88-145 (456)
449 1via_A Shikimate kinase; struc 96.4 0.0013 4.3E-08 60.4 2.8 22 87-108 6-27 (175)
450 1lv7_A FTSH; alpha/beta domain 96.4 0.0009 3.1E-08 65.5 1.8 23 365-387 48-70 (257)
451 3lw7_A Adenylate kinase relate 96.4 0.0016 5.5E-08 58.9 3.3 19 87-105 3-21 (179)
452 1j8m_F SRP54, signal recogniti 96.3 0.00029 9.8E-09 71.3 -2.3 60 61-125 76-136 (297)
453 2jaq_A Deoxyguanosine kinase; 96.3 0.0018 6.1E-08 60.5 3.4 22 87-108 2-23 (205)
454 1np6_A Molybdopterin-guanine d 96.3 0.0018 6.3E-08 60.0 3.4 23 86-108 7-29 (174)
455 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6E-08 58.8 3.2 23 364-386 3-25 (173)
456 2ze6_A Isopentenyl transferase 96.3 0.0017 5.8E-08 63.8 3.3 22 87-108 3-24 (253)
457 2zr9_A Protein RECA, recombina 96.3 0.0019 6.4E-08 66.8 3.7 44 81-126 57-100 (349)
458 3trf_A Shikimate kinase, SK; a 96.3 0.002 7E-08 59.4 3.6 23 85-107 5-27 (185)
459 3io5_A Recombination and repai 96.3 0.013 4.4E-07 59.4 9.6 121 359-511 26-173 (333)
460 3r20_A Cytidylate kinase; stru 96.3 0.0019 6.4E-08 62.8 3.4 24 85-108 9-32 (233)
461 1vht_A Dephospho-COA kinase; s 96.3 0.0018 6.3E-08 61.6 3.3 23 85-107 4-26 (218)
462 1qhx_A CPT, protein (chloramph 96.3 0.0023 7.7E-08 58.6 3.7 27 361-387 2-28 (178)
463 3r20_A Cytidylate kinase; stru 96.3 0.0013 4.6E-08 63.9 2.2 25 362-386 9-33 (233)
464 4a1f_A DNAB helicase, replicat 96.3 0.0035 1.2E-07 64.3 5.4 51 73-125 34-84 (338)
465 3iij_A Coilin-interacting nucl 96.2 0.0021 7.2E-08 59.2 3.2 24 84-107 10-33 (180)
466 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0014 4.8E-08 68.6 2.0 34 361-394 34-67 (392)
467 1ly1_A Polynucleotide kinase; 96.2 0.0024 8.2E-08 58.3 3.4 21 87-107 4-24 (181)
468 2p5t_B PEZT; postsegregational 96.2 0.0016 5.3E-08 64.0 2.0 27 82-108 29-55 (253)
469 2v54_A DTMP kinase, thymidylat 96.2 0.003 1E-07 59.1 3.8 25 84-108 3-27 (204)
470 1uf9_A TT1252 protein; P-loop, 96.1 0.0022 7.6E-08 59.9 2.9 23 86-108 9-31 (203)
471 2rhm_A Putative kinase; P-loop 96.1 0.0023 7.9E-08 59.3 2.9 24 84-107 4-27 (193)
472 1kht_A Adenylate kinase; phosp 96.1 0.0029 9.8E-08 58.4 3.5 25 362-386 3-27 (192)
473 3lxx_A GTPase IMAP family memb 96.1 0.0027 9.2E-08 61.4 3.5 24 87-110 31-54 (239)
474 1via_A Shikimate kinase; struc 96.1 0.0024 8E-08 58.6 2.8 23 364-386 6-28 (175)
475 3cf0_A Transitional endoplasmi 96.1 0.0016 5.3E-08 65.7 1.7 29 80-108 44-72 (301)
476 2c95_A Adenylate kinase 1; tra 96.1 0.0027 9.4E-08 58.9 3.2 24 84-107 8-31 (196)
477 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.016 5.4E-07 56.3 8.9 109 356-514 33-159 (262)
478 1sxj_E Activator 1 40 kDa subu 96.1 0.0021 7E-08 65.9 2.5 23 86-108 37-59 (354)
479 3lw7_A Adenylate kinase relate 96.1 0.0028 9.7E-08 57.2 3.2 19 364-382 3-21 (179)
480 2ze6_A Isopentenyl transferase 96.1 0.0025 8.6E-08 62.6 3.0 23 364-386 3-25 (253)
481 1tev_A UMP-CMP kinase; ploop, 96.1 0.003 1E-07 58.4 3.3 23 85-107 3-25 (196)
482 2p5t_B PEZT; postsegregational 96.1 0.0017 5.7E-08 63.8 1.6 28 360-387 30-57 (253)
483 1vht_A Dephospho-COA kinase; s 96.1 0.0026 9E-08 60.5 3.0 23 362-384 4-26 (218)
484 2jaq_A Deoxyguanosine kinase; 96.0 0.003 1E-07 58.9 3.3 23 364-386 2-24 (205)
485 1ex7_A Guanylate kinase; subst 96.0 0.003 1E-07 59.2 3.2 22 87-108 3-24 (186)
486 1gtv_A TMK, thymidylate kinase 96.0 0.00084 2.9E-08 63.5 -0.7 25 364-388 2-26 (214)
487 2plr_A DTMP kinase, probable t 96.0 0.0033 1.1E-07 59.0 3.5 25 84-108 3-27 (213)
488 2ohf_A Protein OLA1, GTP-bindi 96.0 0.0023 7.8E-08 67.1 2.4 28 82-109 19-46 (396)
489 1q57_A DNA primase/helicase; d 96.0 0.024 8.3E-07 61.2 10.6 28 358-385 238-265 (503)
490 2wwf_A Thymidilate kinase, put 96.0 0.0033 1.1E-07 59.2 3.2 25 83-107 8-32 (212)
491 3k53_A Ferrous iron transport 96.0 0.003 1E-07 62.4 3.1 24 364-387 5-28 (271)
492 2rhm_A Putative kinase; P-loop 96.0 0.0027 9.2E-08 58.8 2.5 27 360-386 3-29 (193)
493 3ake_A Cytidylate kinase; CMP 96.0 0.0034 1.2E-07 58.9 3.2 22 87-108 4-25 (208)
494 1jal_A YCHF protein; nucleotid 96.0 0.0051 1.7E-07 63.7 4.8 34 362-395 2-46 (363)
495 1mky_A Probable GTP-binding pr 95.9 0.0034 1.2E-07 66.8 3.4 23 87-109 182-204 (439)
496 1gtv_A TMK, thymidylate kinase 95.9 0.0017 5.7E-08 61.4 0.8 22 87-108 2-23 (214)
497 2ce7_A Cell division protein F 95.9 0.0014 4.6E-08 70.6 0.2 37 70-108 36-72 (476)
498 1gvn_B Zeta; postsegregational 95.9 0.0034 1.2E-07 62.9 3.1 24 85-108 33-56 (287)
499 2vli_A Antibiotic resistance p 95.9 0.0033 1.1E-07 57.8 2.7 24 84-107 4-27 (183)
500 2qmh_A HPR kinase/phosphorylas 95.9 0.0056 1.9E-07 57.8 4.3 38 70-108 20-57 (205)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.2e-63 Score=570.02 Aligned_cols=403 Identities=33% Similarity=0.550 Sum_probs=297.2
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc---ccCCCceEEEEecccc--CCch
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL---AIPSSIDLLYCEQEVE--ASDD 130 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~---~ip~~~~i~~~~qe~~--~~~~ 130 (568)
....|...|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|..+ +.+....+.|+.|+.. ....
T Consensus 432 ~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 432 EGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp SSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTS
T ss_pred ccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCC
Confidence 3457788899999999999999999999999999999999999999999995322 1222344567666541 1222
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH--------hccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 131 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL--------KSIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el--------~~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
+..+.+.... .+. ..++.++++.+ ..++..++++++|..|+..-+.. |+|
T Consensus 512 tv~e~l~~~~-----------------~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 512 SVLDFVFESG-----------------VGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp BHHHHHHTTC-----------------SSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHhh-----------------cCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3333332100 000 11222222221 22455788898888776654333 889
Q ss_pred Cc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy16366 199 PS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK 269 (568)
Q Consensus 199 eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ 269 (568)
|| .||.++++..++|||+||||++++..+||+|++|++|+++.|.|+++.|.......
T Consensus 574 EPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~------------- 640 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA------------- 640 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGG-------------
T ss_pred CCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHH-------------
Confidence 99 28888888878999999999999999999999999999988889988764310000
Q ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC------CCCCCeEEEEeeEE
Q psy16366 270 QIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP------YLPPPVLGLHDVTF 343 (568)
Q Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~v~~ 343 (568)
... .. . .. ....+.+|.+. ..+.++|+++|++|
T Consensus 641 -----~~~-----------------------~~--l--~~---------~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~ 679 (986)
T 2iw3_A 641 -----KAY-----------------------EE--L--SN---------TDLEFKFPEPGYLEGVKTKQKAIVKVTNMEF 679 (986)
T ss_dssp -----GGS-----------------------SS--T--TT---------CCCCCCCCCCCCCTTCCSTTSEEEEEEEEEE
T ss_pred -----HHH-----------------------Hh--h--hh---------hhhhccccccccccccccCCCceEEEEeeEE
Confidence 000 00 0 00 00011122211 12356899999999
Q ss_pred EeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC--CCCCCHHH
Q psy16366 344 GYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL--FPDDTPCE 420 (568)
Q Consensus 344 ~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l--~~~~~~~e 420 (568)
+|++ .+++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++...+|+|++|++...+ ..+.|+.+
T Consensus 680 ~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e 759 (986)
T 2iw3_A 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSE 759 (986)
T ss_dssp CCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHH
T ss_pred EeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHH
Confidence 9954 26799999999999999999999999999999999999999999999987778999999752100 01122222
Q ss_pred HHHH----------------------------------------------------------------------------
Q psy16366 421 YLMK---------------------------------------------------------------------------- 424 (568)
Q Consensus 421 ~l~~---------------------------------------------------------------------------- 424 (568)
++..
T Consensus 760 ~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~ 839 (986)
T 2iw3_A 760 YIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMS 839 (986)
T ss_dssp HHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCG
T ss_pred HHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccch
Confidence 2110
Q ss_pred --------------------------------hcCCCHHHHHHHHHhCCCCCcc-ccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 425 --------------------------------LFNLPYEKSRRQLGMFGLPSYA-HTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 425 --------------------------------~~~~~~~~~~~~L~~~~l~~~~-~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
........++++|+.+||.... ..+++.+|||||||||+|||+|+.+
T Consensus 840 ~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~ 919 (986)
T 2iw3_A 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQR 919 (986)
T ss_dssp GGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhC
Confidence 0011245677899999997543 3457899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||||||+.+...+.+.|+++++|||+||||++++..+|+++|+|.+|+++.
T Consensus 920 P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 920 PHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999864
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-59 Score=515.02 Aligned_cols=414 Identities=23% Similarity=0.261 Sum_probs=272.1
Q ss_pred eEE-eeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc--cCCchhHHH-
Q psy16366 60 IKV-ENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV--EASDDSAVN- 134 (568)
Q Consensus 60 I~i-~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~--~~~~~~~~~- 134 (568)
..+ +|++++|+++ .+|.++| +|.+||++|||||||||||||||+|+|...| ..+.+......+ ...+.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHH
Confidence 345 5899999887 4899999 9999999999999999999999999997433 222210000000 000000000
Q ss_pred --HHH----------hc---cHHHH-HHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 135 --IVL----------SA---DKNRV-KLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 135 --~v~----------~~---~~~~~-~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
... +. ..... ....+ .+... +...+..++++.+. .+...+.++++|..++..
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e--~~~~~---~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE--LLKKA---DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHH--HHHHH---CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHH--HHhhh---hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 000 00 00000 00000 00000 00112333444432 123357778888777654
Q ss_pred CCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeee--EEcCChhHHHHH
Q psy16366 192 GFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLF--YYKGNFTLFKKM 252 (568)
Q Consensus 192 g~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~--~~~g~y~~~~~~ 252 (568)
-+.. |+|||. ||.++.+ .++|||+||||++++..+||+|++|+++... .+..+++.-..
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~- 250 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNG- 250 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH-
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHHH-
Confidence 3332 889991 4555443 4899999999999999999999999865321 22233331100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC--C
Q psy16366 253 YVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP--Y 330 (568)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 330 (568)
+..... +. .... .. . .......+.++.+. .
T Consensus 251 ------------------~~~~~~-~~---------------------~~~~------~~-~-~~~~~~~~~~~~~~~~~ 282 (538)
T 1yqt_A 251 ------------------INEFLR-GY---------------------LKDE------NV-R-FRPYEIKFTKTGERVEI 282 (538)
T ss_dssp ------------------HHHHHH-TE---------------------ETTT------TE-E-CSSSCCCCCCSSGGGSS
T ss_pred ------------------HHHHhh-hc---------------------cchh------hh-c-ccccccccccCCccccc
Confidence 000000 00 0000 00 0 00000011111111 1
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCC
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~ 410 (568)
.+.++++++|+++.| ++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.. ...|+|++|++.
T Consensus 283 ~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~- 357 (538)
T 1yqt_A 283 ERETLVTYPRLVKDY-GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIK- 357 (538)
T ss_dssp CCCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCC-
T ss_pred CCCeEEEEeeEEEEE-CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCc-
Confidence 245689999999999 44 5799999999999999999999999999999999999999999976 457999999874
Q ss_pred CCCCCCCHHHHHHHh--cC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 411 HLFPDDTPCEYLMKL--FN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~--~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
.+...|+.+++... .. ...+.++++|+.+++.... .+++.+|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 358 -~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 358 -ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp -CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred -CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 34567887765432 11 1345577889999997554 4588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC--CeEEEEcCCHHHHH
Q psy16366 488 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK--KNIRKFNGDFDDYR 539 (568)
Q Consensus 488 ~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~--g~i~~~~g~~~~~~ 539 (568)
++..+.++|+++ ++|||+||||++++..+||++++|.+ |.+. ..|++++..
T Consensus 436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~ 492 (538)
T 1yqt_A 436 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMR 492 (538)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHH
Confidence 999999998754 78999999999999999999999986 5665 346665544
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.1e-58 Score=512.24 Aligned_cols=417 Identities=24% Similarity=0.265 Sum_probs=276.6
Q ss_pred ceEE--------eeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc--cC
Q psy16366 59 DIKV--------ENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV--EA 127 (568)
Q Consensus 59 ~I~i--------~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~--~~ 127 (568)
.|++ +|++++|++. .+|+++| +|.+||++||+||||||||||||+|+|...| ..+.+.....++ ..
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhhee
Confidence 4788 8999999877 4999999 9999999999999999999999999997433 222210000000 00
Q ss_pred CchhHHHHHH--------------hccHHHHHHH--HHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHH
Q psy16366 128 SDDSAVNIVL--------------SADKNRVKLL--KECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRA 184 (568)
Q Consensus 128 ~~~~~~~~v~--------------~~~~~~~~l~--~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~ 184 (568)
.+.. +.... +.......+. ...+.+.. .+...+..++++.+. .+...++++++
T Consensus 160 ~G~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQ 235 (607)
T 3bk7_A 160 RGNE-LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK---VDEVGKFEEVVKELELENVLDRELHQLSGGELQ 235 (607)
T ss_dssp TTST-HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH---TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHH
T ss_pred CCEe-hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh---hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHH
Confidence 0000 00000 0000000000 00000000 000112334444432 22345788888
Q ss_pred HHHHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE--EcCC
Q psy16366 185 RRILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY--YKGN 245 (568)
Q Consensus 185 ~~~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~--~~g~ 245 (568)
|..++..-+.. |+|||. ||.++.+ .+.|||+||||++++..+||+|++|+++...+ +..+
T Consensus 236 RvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~ 314 (607)
T 3bk7_A 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 314 (607)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEEEECCCccccceeccc
Confidence 87776543332 889991 4555443 38999999999999999999999998653221 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeec
Q psy16366 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 325 (568)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (568)
++.-. . +..... +. ... . .. . .......+.+
T Consensus 315 ~~~~~---------~----------i~~~~~-~~---------------------~~~----~--~~-~-~~~~~~~~~~ 345 (607)
T 3bk7_A 315 KGTRN---------G----------INEFLQ-GY---------------------LKD----E--NV-R-FRPYEIRFTK 345 (607)
T ss_dssp EEHHH---------H----------HHHHHH-TE---------------------ETT----T--TE-E-CCSSCCCCCC
T ss_pred hhHHH---------H----------HHHHHh-hc---------------------chh----h--hh-h-cccccccccc
Confidence 22100 0 000000 00 000 0 00 0 0000111122
Q ss_pred CCCC--CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEE
Q psy16366 326 PNPP--YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 403 (568)
Q Consensus 326 ~~~~--~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~ 403 (568)
+.+. ....++++++|+++.| ++ ..|+++||+|.+||+++|+||||||||||||+|+|+++|++|+|.. ..+++|
T Consensus 346 ~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~ 421 (607)
T 3bk7_A 346 LSERVDVERETLVEYPRLVKDY-GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAY 421 (607)
T ss_dssp STTSCCCCCCEEEEECCEEEEC-SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEE
T ss_pred CCCcccccCceEEEEeceEEEe-cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEE
Confidence 2111 1235689999999999 44 4799999999999999999999999999999999999999999976 457999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-c-C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-F-N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~-~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
++|++. ++...|+.+++... . . ...+.+.++|+.+++....+ +++.+|||||||||+|||||+.+|+|||||||
T Consensus 422 v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 422 KPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp ECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred EecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999874 34567887766432 1 1 12345678899999986554 57899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC--CeEEEEcCCHHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK--KNIRKFNGDFDDYRE 540 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~--g~i~~~~g~~~~~~~ 540 (568)
|+|||+.++..+.++|+++ +.|||+||||++++..+||++++|++ |.+. ..|++++...
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 9999999999999998764 67999999999999999999999986 6654 3466655543
No 4
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-54 Score=482.77 Aligned_cols=411 Identities=19% Similarity=0.219 Sum_probs=264.3
Q ss_pred eeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHh-ccH
Q psy16366 64 NFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS-ADK 141 (568)
Q Consensus 64 nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~-~~~ 141 (568)
|++++|++. ..|++++ ++.+|+++||+||||||||||||+|+|...|. .+.+.. . .........+. ...
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~-----~-~~~~~~~~~~~g~~~ 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDD-----P-PEWQEIIKYFRGSEL 152 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCC-----S-SCHHHHHHHTTTSTH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEec-----c-cchhhhhheecChhh
Confidence 467788765 4666666 68999999999999999999999999975433 222200 0 00000000000 000
Q ss_pred HHH--HHHHH------------------------HHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHH
Q psy16366 142 NRV--KLLKE------------------------CSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRIL 188 (568)
Q Consensus 142 ~~~--~l~~~------------------------~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L 188 (568)
... ..... ...+..........+..++++.+. .+...++++++|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 000 00000 000000000111234445555542 234567788888776
Q ss_pred HhcCCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE--cCChhHHH
Q psy16366 189 AGLGFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY--KGNFTLFK 250 (568)
Q Consensus 189 ~~lg~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~--~g~y~~~~ 250 (568)
+..-+.. ++|||. ++.+++++ .+.|||+||||++++..+||+|++|+++...+. ..+++. .
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~-~ 311 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV-R 311 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH-H
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhH-H
Confidence 6543322 889992 44455443 378999999999999999999999987654321 111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCC
Q psy16366 251 KMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPY 330 (568)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (568)
. . +..+.. + ... ..... .......+.....
T Consensus 312 ~--------~----------~~~~~~-~---------------------~~~------~~~~~--~~~~~~~~~~~~~-- 341 (608)
T 3j16_B 312 E--------G----------INIFLD-G---------------------HIP------AENLR--FRTEALQFRIADA-- 341 (608)
T ss_dssp H--------H----------HHHHHH-T---------------------EET------TTTEE--CSSSCCCCCCSSS--
T ss_pred H--------H----------HHHhhc-c---------------------ccc------hhhhc--ccccccccccccc--
Confidence 0 0 000000 0 000 00000 0000000111100
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCC-----CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEe
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME-----SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~G-----e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~ 405 (568)
.....+...++++.|++...+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++
T Consensus 342 ~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~ 419 (608)
T 3j16_B 342 TEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKP 419 (608)
T ss_dssp SCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEEC
T ss_pred ccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEec
Confidence 01111222567888954456899999999999 88999999999999999999999999999742 345799999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc-C--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF-N--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~-~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|+.. .....++.+++.... . .....+.++++.+++....+ +++.+|||||||||+|||||+.+|+||||||||+
T Consensus 420 q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 420 QKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cccc--ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9864 233457777664322 1 23456678899999987665 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC--CeEEEEcCCHHHHHH
Q psy16366 483 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK--KNIRKFNGDFDDYRE 540 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~--g~i~~~~g~~~~~~~ 540 (568)
|||+.++..+.++|+++ +.|||+||||++++..+||++++|++ |++. ..|++++...
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhh
Confidence 99999999998888764 68999999999999999999999986 7775 4666665543
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.2e-55 Score=479.25 Aligned_cols=296 Identities=20% Similarity=0.238 Sum_probs=214.1
Q ss_pred CCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeee
Q psy16366 176 EADAAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240 (568)
Q Consensus 176 ~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~ 240 (568)
...+.+++++..++..-+.. ++|||. +|.++++++ ++|||+||||++++..+||+|++|++|...
T Consensus 137 ~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCccc
Confidence 44678888887776543332 889992 455555444 789999999999999999999999876433
Q ss_pred E--EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCcc
Q psy16366 241 Y--YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 318 (568)
Q Consensus 241 ~--~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (568)
+ +...+..-. .... .+... .... .... +.
T Consensus 217 ~g~~~~~~~~~~---------~~~~---------~~~g~-----------------------~~~~----~~~~--r~-- 247 (538)
T 3ozx_A 217 YGRVSKSYAARV---------GINN---------FLKGY-----------------------LPAE----NMKI--RP-- 247 (538)
T ss_dssp EEEECCCEEHHH---------HHHH---------HHHTE-----------------------ETTT----TEEC--SS--
T ss_pred ccccchhhhHHH---------HHHH---------HHhhh-----------------------chhh----hhhc--cc--
Confidence 2 112222100 0000 00000 0000 0000 00
Q ss_pred ceeeeecCCC-----CCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 319 YIVKFRFPNP-----PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 319 ~~~~~~~~~~-----~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
....+....+ .....++++++++++.| ++ ..|.++||+|++||++||+||||||||||+|+|+|+++|++|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL-GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp SCCCCSCC----------CCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred hhhhccccccccccccccccceEEEcceEEEE-CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 0000000000 01235689999999999 44 56888999999999999999999999999999999999999999
Q ss_pred EECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 394 ~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
... ...++|++|+.. .....|+.+++..... .....+.++++.+++....+ +++.+|||||||||+|||||+
T Consensus 326 ~~~-~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 326 TPE-KQILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp ESS-CCCEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHHHHHHHHH
T ss_pred EEC-CeeeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 865 456899999864 2346788887754321 12345677899999987655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|+++
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999888754 679999999999999999999999863
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-53 Score=512.49 Aligned_cols=202 Identities=27% Similarity=0.384 Sum_probs=167.7
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++ +.+
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999542 3699999999999999999999999999999999999999999998753 356
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~a 467 (568)
|+|++|++. +| ..|+.+++.... ..+.+++.+.++..++...... ....+|||||||||+||||
T Consensus 1109 i~~v~Q~~~--l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPI--LF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCC--CC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCc--cc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 999999983 55 469999875321 2355666666665554332221 1246899999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+.+|+||||||||++||+.+...+.+.|++. +.|||+||||++++.. ||+|++|++|++++ .|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999875 5699999999999965 99999999999986 477777653
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.7e-50 Score=481.06 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=171.4
Q ss_pred eEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 335 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
-|+++||+|+||+ +.++|+||||+|++|+++|||||||||||||+++|.|+++|++|+|..++ |.+|
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5899999999964 34799999999999999999999999999999999999999999998764 4579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELT 468 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al 468 (568)
++++|+|. +|.. |+.+++... .+.+.+++.++++..++.+..... .-..||||||||++|||||
T Consensus 1156 ~~V~Qdp~--LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT--LFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC--CCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE--eeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999984 6654 899987432 235677888888887764322111 2357999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+++|+||||||||++||+++...+.+.|++. ++|+|+|+|.++.+.. ||+|+||++|+|+++ |+++++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~-Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEK-GTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEE-ECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 9999999999999999999999999999876 5799999999999965 799999999999875 77777654
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.1e-48 Score=443.01 Aligned_cols=105 Identities=27% Similarity=0.378 Sum_probs=89.7
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC---eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE
Q psy16366 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD---ILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 505 (568)
Q Consensus 432 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~---lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~ 505 (568)
...+.|..+++......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.+...+.++|+++ +.|||+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 455678889997544456889999999999999999998874 99999999999999999999888755 679999
Q ss_pred EecchHHHHhhCceEEEE------ECCeEEEEcCCHHHH
Q psy16366 506 VSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 538 (568)
Q Consensus 506 vsHd~~~i~~~~~~i~~l------~~g~i~~~~g~~~~~ 538 (568)
||||++++. .||++++| ++|+++ ..|+.+++
T Consensus 602 vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~ 638 (670)
T 3ux8_A 602 IEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEV 638 (670)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHH
T ss_pred EeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHH
Confidence 999999985 69999999 789987 45776664
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-46 Score=379.51 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=176.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
.++|+++||+++|+++.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.. +.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 35899999999995455699999999999999999999999999999999999999999998754 23
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.|||+||++...++ ..|+.+++... .+.+. +.+.++|+.+||....+ +++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHHcCC
Confidence 59999999854555 67998877532 23343 34677899999987665 578999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 232 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 232 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHT
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999888654 579999999999999999999999999997 467777653
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-46 Score=373.25 Aligned_cols=201 Identities=27% Similarity=0.410 Sum_probs=175.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------- 397 (568)
++|+++||+++| +++++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++.
T Consensus 5 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 579999999999 677899999999999999999999999999999999999999999998643
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCc-cccCCCCCCCHhHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSY-AHTIPIRDLSGGQKA 460 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~-~~~~~~~~LSgGqkq 460 (568)
+..+||++|++ .+++.+|+.+++... .+.+. +.+.++|+.+||... .+ +++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~q 160 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQ 160 (262)
T ss_dssp CHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHH
T ss_pred ChhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCHHHHH
Confidence 12499999986 478888999987531 23332 346788999999876 55 478999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999988765 6799999999999999999999999999974 567666
Q ss_pred HH
Q psy16366 538 YR 539 (568)
Q Consensus 538 ~~ 539 (568)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1e-45 Score=371.61 Aligned_cols=201 Identities=28% Similarity=0.403 Sum_probs=175.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Cee
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~ 400 (568)
++|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..
T Consensus 23 ~~l~i~~l~~~y-~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSF-GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 479999999999 677899999999999999999999999999999999999999999998753 125
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
|||++|++. +++.+|+.+++... .+.+. +.+.++|+.++|....+ +++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHCCC
Confidence 999999863 78888999987531 23332 34678899999987665 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 247 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLF 247 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999998765 6799999999999999999999999999974 56766653
No 12
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.4e-46 Score=385.56 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=175.8
Q ss_pred CCCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 332 PPPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
..++|+++||+++|+++ .++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45789999999999532 4699999999999999999999999999999999999999999998753
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+.+|||+||++. +++.+|+.+++.. ..+.+. +.+.++|+.+||....+ +++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHH
Confidence 246999999974 8888999998753 234443 34677899999987665 4789999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~~ev 251 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEV 251 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999988754 6799999999999999999999999999974 6766654
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.5e-46 Score=368.07 Aligned_cols=193 Identities=28% Similarity=0.363 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------- 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 398 (568)
+|+++||+++|+++ .++|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47899999999532 36999999999999999999999999999999999999999999987541
Q ss_pred --eeEEEEecCCCCCCCCCCCHHHHHHHh---c---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 --LRIGKFDQHSGEHLFPDDTPCEYLMKL---F---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 --~~i~~~~q~~~~~l~~~~~~~e~l~~~---~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
..|||++|++ .+++.+|+.+++... . .... +.+.++++.+++......+++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 2599999997 478889999987532 1 2222 346678999999865434578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++.+ .+||++++|++|+++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988764 67999999999965 7899999999999975
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.7e-46 Score=364.10 Aligned_cols=192 Identities=24% Similarity=0.365 Sum_probs=168.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC---------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------------- 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 398 (568)
++|+++|++++| +++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++..
T Consensus 3 ~~l~~~~l~~~y-~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVI-RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 479999999999 5678999999999999999999999999999999999999999999986531
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
..|+|++|++ .+++..|+.+++... .+.+ .+.+.++++.+++....+ +++.+|||||||||+|||||+.+
T Consensus 82 ~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence 3599999987 377888999987532 2333 234677899999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|++|||||||++||+.+...+.+.|.++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999988765 67999999999998 7999999999999864
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.2e-45 Score=368.84 Aligned_cols=202 Identities=25% Similarity=0.295 Sum_probs=176.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 401 (568)
.++|+++||++.| +++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++.. ..+
T Consensus 9 ~~~l~~~~l~~~~-~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHV-QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEe-CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 3689999999999 6789999999999999999999999999999999999999999999987542 359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcC-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc------
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------ 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~------ 470 (568)
+|++|++. ++...|+.+++..... ...+.+.++++.+++....+. ++.+|||||||||+|||||+.
T Consensus 88 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 88 AVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp EEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-BGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHhcccccCC
Confidence 99999874 5567899998764321 123567889999999876654 789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 236 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL 236 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 99999999999999999999999988765 359999999999999999999999999997 467777764
No 16
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.9e-45 Score=381.71 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=175.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Cee
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~ 400 (568)
++|+++||+++| ++.++|+||||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.. +..
T Consensus 3 ~~l~i~~ls~~y-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 379999999999 678899999999999999999999999999999999999999999997643 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|||+||++ .+|+.+|+.+++.... +.+ .+.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|+
T Consensus 82 ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 82 LGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-YPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999987 4899999999986432 222 2456788999999877664 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||++||+.++..+.+.|. +.+.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHH
Confidence 999999999999999888876543 457899999999999999999999999999974 56776643
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-45 Score=366.59 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=176.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
-++|+++||+++| +++++|++|||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.. +..||
T Consensus 13 ~~~l~i~~l~~~y-~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEE-CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 3679999999999 678899999999999999999999999999999999999999999998754 23599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++..|+.+++... .+.+. +.+.++++.+||....+ +++.+|||||||||+|||||+.+|+||
T Consensus 92 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999874 67788999987432 23332 34677899999987665 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 234 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 234 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999998765 5799999999999999999999999999974 56766654
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-45 Score=363.66 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=174.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------ee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 400 (568)
.++|+++||+++| +++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++.. ..
T Consensus 4 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEE-CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4589999999999 5678999999999999999999999999999999999999999999987531 24
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc--CC--C--HHHHHHHHHhCC-CCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF--NL--P--YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~--~~--~--~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|||++|++ .+++..|+.+++.... .. . .+.+.++++.++ +..... +++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc-CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999987 4778889999886422 11 1 234567888884 876655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 99999999999999999999998765 5799999999999999999999999999974 56666653
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-45 Score=370.68 Aligned_cols=200 Identities=20% Similarity=0.282 Sum_probs=174.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++|+++||+++| +++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++. +..
T Consensus 5 ~~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEE-CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3589999999999 677899999999999999999999999999999999999999999998753 125
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-----C-----------CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-----N-----------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-----~-----------~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
|+|++|++. +++..|+.+++.... + .. .+.+.++++.+||....+ +++.+|||||||
T Consensus 84 i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHH
T ss_pred EEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-CCchhCCHHHHH
Confidence 999999873 677889999875421 2 11 234677899999987655 478999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 999999999999999999999999999999999998765 6799999999999999999999999999974 456565
No 20
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-44 Score=378.91 Aligned_cols=199 Identities=25% Similarity=0.357 Sum_probs=175.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| ++..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 3 ~l~~~~l~~~y-g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 678899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++.. ..+.+. +.+.++|+.++|....+ +++.+|||||||||+|||||+.+|+|||||
T Consensus 82 Q~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 997 48999999998743 234443 34678899999987665 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l 221 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 221 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHH
Confidence 999999999999888887654 7899999999999999999999999999975 4666664
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.7e-45 Score=378.23 Aligned_cols=204 Identities=28% Similarity=0.401 Sum_probs=177.8
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEE
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIG 402 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~ 402 (568)
+.++|+++||+++|++++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..||
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 457899999999994356799999999999999999999999999999999999999999998753 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +|+.+|+.+++... .+.+. +.+.++|+.++|.+..+ +++.+|||||||||+|||||+.+|+||
T Consensus 91 ~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 91 LVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999874 88999999987532 23332 35678899999987765 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999998888654 6799999999999999999999999999975 46766653
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.9e-45 Score=363.15 Aligned_cols=199 Identities=25% Similarity=0.358 Sum_probs=172.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
++|+++||+++|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.. +..|+|++|++. ++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--~~~i~~v~q~~~--~~ 78 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--YQSIGFVPQFFS--SP 78 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--CSCEEEECSCCC--CS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--eccEEEEcCCCc--cC
Confidence 37999999999931678999999999999999999999999999999999999999999984 356999999874 66
Q ss_pred CCCCHHHHHHHhc----C----CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 414 PDDTPCEYLMKLF----N----LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 414 ~~~~~~e~l~~~~----~----~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+..|+.+++.... + .. .+.+.++++.+||....+ +++.+|||||||||+|||||+.+|+||||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 6789999875421 1 12 234678899999987665 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+ + ..|+.+++.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998765 6799999999999999999999999999 5 457777653
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4e-45 Score=370.54 Aligned_cols=204 Identities=24% Similarity=0.327 Sum_probs=174.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
.++|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +.
T Consensus 19 ~~~l~~~~l~~~y-~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp CEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CceEEEEeEEEEE-CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4589999999999 667899999999999999999999999999999999999999999998754 13
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-------C-CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-------~-~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
.|||++|++...++...|+.+++.... + .. .+.+.++|+.+||..... +++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHH
Confidence 599999987433444569999875321 1 12 234677899999987655 47899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|+||||||||+|||+.++..+.++|.++ +.|| |+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999998765 5789 99999999999999999999999997 457777663
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-44 Score=375.68 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=175.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 58999999999 677899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++.... +.+ .+.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-KPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 987 4889999999986432 222 2357789999999877654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|++.. .|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 46776653
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-44 Score=357.94 Aligned_cols=197 Identities=26% Similarity=0.378 Sum_probs=170.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| ++ +|+|+||+|++ ++++|+||||||||||||+|+|+++|++|+|.++. +..|||++
T Consensus 1 ml~~~~l~~~y-~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRL-GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEE-TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEe-CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 46899999999 44 59999999999 99999999999999999999999999999998753 34699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
|++ .+++.+|+.+++...... ..+.+.++++.+|+....+ +++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 987 378888999987643211 1245678899999987665 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 215 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999998764 6799999999999999999999999999974 56766653
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.9e-44 Score=375.19 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=174.9
Q ss_pred eEEEEeeEEEeCCCce--eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------C
Q psy16366 335 VLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------R 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~--il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 398 (568)
+|+++||+++| ++++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +
T Consensus 3 ~l~i~~l~~~y-~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEE-GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEE-CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 58999999999 5667 99999999999999999999999999999999999999999997643 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
..|||++|++ .+|+.+|+.+++.... +.+. +.+.++|+.++|.+..+ +++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhC
Confidence 4699999987 4889999999986432 2332 35678899999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999998888654 6799999999999999999999999999975 46666643
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.2e-44 Score=375.24 Aligned_cols=200 Identities=26% Similarity=0.358 Sum_probs=175.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEES-SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 58999999999 677899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +|+.+|+.+++... .+.+. +.+.++++.++|.+..++ ++.+|||||||||+|||||+.+|+|||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-YPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9874 88999999987532 23332 346788999999887664 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 46766653
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-44 Score=361.08 Aligned_cols=202 Identities=28% Similarity=0.390 Sum_probs=173.3
Q ss_pred eEEEEeeEEEeC-CC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEE
Q psy16366 335 VLGLHDVTFGYP-GG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~-~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~ 402 (568)
+|+++||+++|+ ++ +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999994 24 5799999999999999999999999999999999999999999998764 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcC--C----CHHHHHHHHHhCCCC--CccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFN--L----PYEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~--~----~~~~~~~~L~~~~l~--~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++|++.. ++...|+.+++..... . ..+.+.++++.+||. ...+ +++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGG-GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchh-hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99998632 3446799998754211 1 245678899999998 6655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 226 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEFL 226 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999998765 5799999999999999999999999999964 56666654
No 29
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.4e-44 Score=373.43 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=174.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 1 ml~~~~l~~~y-~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKW-KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEEC-SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEE-CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 47899999999 566 99999999999999999999999999999999999999999998764 23599999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
|++ .+|+.+|+.+++... .+. ..+.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 987 488999999987532 122 22667889999999887664 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 482 NNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 215 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEI 215 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999998888654 6799999999999999999999999999975 4666664
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.2e-44 Score=374.90 Aligned_cols=200 Identities=25% Similarity=0.368 Sum_probs=171.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEE-CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 59999999999 677899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +|+.+|+.+++.... +.+. +.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|+|||||
T Consensus 90 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 90 QSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-CTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9874 889999999986432 2332 346788999999877654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 46766653
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.4e-44 Score=374.77 Aligned_cols=200 Identities=24% Similarity=0.373 Sum_probs=174.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
+|+++||+++| +++++|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++. +.
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 58999999999 677899999999999999999999999999999999999999999997643 23
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.|||+||++. +|+.+|+.+++... .+.+. +.+.++|+.++|.+..+. ++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-KPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-CGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-CcccCCHHHHHHHHHHHHHhcCC
Confidence 5999999874 88999999987532 23333 346788999999877654 78999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 999999999999999999988888654 6799999999999999999999999999975 46766653
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-43 Score=357.07 Aligned_cols=202 Identities=23% Similarity=0.359 Sum_probs=169.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECCC------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPR------------ 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------ 398 (568)
.++|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+ ++|++|+|.+...
T Consensus 18 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 4689999999999 678899999999999999999999999999999999999 4789999987542
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh-------cC---CCH----HHHHHHHHhCCCCCccccCCCC-CCCHhHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL-------FN---LPY----EKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVA 463 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~-------~~---~~~----~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqRv~ 463 (568)
..++|++|++. +++.+|+.+++... .+ .+. +.+.++|+.+|+......+++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 23899999874 67888888876421 11 122 3467889999997433334666 59999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||++++|++|+++. .|+.++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLV 252 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999999999999999999999999876 46999999999999886 89999999999974 4665554
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-43 Score=352.60 Aligned_cols=199 Identities=25% Similarity=0.413 Sum_probs=167.5
Q ss_pred eEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+++|+ +++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 378999999994 356899999999999999999999999999999999999999999998754 23599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. ++. .|+.+++.... ....+.+.+++..+++...... .++.+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 87 VVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999874 555 59999885422 2345566677777777543322 24689999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++++.. ||++++|++|+++. .|+.+++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l 230 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKEL 230 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999876 6799999999999865 99999999999974 5666654
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-43 Score=355.34 Aligned_cols=196 Identities=23% Similarity=0.337 Sum_probs=172.8
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~ 402 (568)
+|+++||+++| ++ +++|+++||+|+ |++++|+||||||||||||+|+|++ |++|+|.++. +.+++
T Consensus 1 ml~~~~l~~~y-~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITL-SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEE-EEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEe-CCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheE
Confidence 47899999999 44 689999999999 9999999999999999999999999 9999998764 33699
Q ss_pred -EEecCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 403 -KFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 403 -~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
|++|++. + ..|+.+++... .....+.+.++++.++|. ...+ +++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 78 TNLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-RKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp ECCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-SBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999874 3 78999887532 244566788999999998 6655 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCc-eEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~-~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||++||+.++..+.+.|.++..|||+||||++++..+|+ ++++|++|+++. .|+.+++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999999886699999999999999999 999999999974 56766553
No 35
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.4e-43 Score=361.13 Aligned_cols=202 Identities=27% Similarity=0.368 Sum_probs=170.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..|+++||+|+|++++++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +..||
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 4699999999996667899999999999999999999999999999999999999999998764 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++.... ....+.+.+.+..+++...... .+..+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~--lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTV--LFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCC--CCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCc--cCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 9999974 664 59999886432 2345556666666555432211 24578999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+.. ||+|++|++|+++. .|+.+++.+
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 6799999999999987 99999999999975 577777643
No 36
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.4e-43 Score=355.21 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||+++|++ .+++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999943 16799999999999999999999999999999999999999999998754 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcC-CCH-HH---------HHHHHHhC--CCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFN-LPY-EK---------SRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~-~~~-~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
|+|++|++. +++ .|+.+++..... ... .. +.+++..+ |+..... +++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcCCCCHHHHHHHHHHHH
Confidence 999999874 565 599998864321 111 11 23456666 6765554 4689999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++.. ||++++|++|+++. .|+.+++.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999999999876 4699999999999975 99999999999974 57777654
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.8e-43 Score=345.13 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=163.6
Q ss_pred CeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC
Q psy16366 334 PVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 334 ~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
.+|+++||+++|+ +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++. +|+|++|++. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 3789999999995 246899999999999999999999999999999999999999999999876 5999999874 5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 413 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 413 ~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
++. |+.+++..............+..+++..... ..++.+|||||||||+|||||+.+|++|||||||+
T Consensus 81 ~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 81 MPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp CSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 664 9999886432223333444555555432111 12457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||+.+...+.+.+ .++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 217 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999974 443 579999999999986 599999999999974 56666553
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-43 Score=352.79 Aligned_cols=197 Identities=24% Similarity=0.381 Sum_probs=164.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECCC------------ee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPR------------LR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------~~ 400 (568)
+|+++||+++| +++++|+||||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++.. ..
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEE-CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 68999999999 667899999999999999999999999999999999998 8899999987531 23
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh----cC--CC----HHHHHHHHHhCCCC-CccccCCCCC-CCHhHHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL----FN--LP----YEKSRRQLGMFGLP-SYAHTIPIRD-LSGGQKARVALAELT 468 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~----~~--~~----~~~~~~~L~~~~l~-~~~~~~~~~~-LSgGqkqRv~lA~al 468 (568)
++|++|++. +++.+|+.+++... .+ .. .+.+.++|+.+|+. ...+ +++.+ |||||||||+|||||
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-RYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-SBTTCC----HHHHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHH
Confidence 789999874 67888998876421 12 12 23467789999995 4444 57888 999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~ 536 (568)
+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||++++|++|+++. .|+.+
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 9999999999999999999999999999876 46999999999999988 59999999999974 46665
No 39
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-44 Score=354.21 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=170.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++||+++|++++++|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.++. +..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 478999999995456899999999999999999999999999999999999999999998643 245999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~--~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +++ .|+.+++... .....+.+.++++.+++...... .++.+|||||||||+|||||+.+
T Consensus 81 v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 VSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp ECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 999874 565 4999987532 12345667788888888765432 24579999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||++||+.+...+.+.|.++ +.|||+||||++++. .||++++|++|+++ ..|+.+++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999888888765 679999999999986 59999999999986 4677777643
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.8e-43 Score=349.54 Aligned_cols=195 Identities=26% Similarity=0.327 Sum_probs=171.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+|+++||+++ ++|+|+||+|.+|++++|+||||||||||||+|+|+++|+ |+|.++.. ..++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 7899999975 5899999999999999999999999999999999999999 99987642 35999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC-------e
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD-------I 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~-------l 474 (568)
++|++. +++..|+.+++.... ....+.+.++++.+|+....+ +++.+|||||||||+|||||+.+|+ +
T Consensus 78 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 78 LSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp ECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 999874 677889999886421 123566788999999987665 4789999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHHS
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999998765 5799999999999999999999999999974 56776653
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-43 Score=343.20 Aligned_cols=189 Identities=25% Similarity=0.353 Sum_probs=163.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEec
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQ 406 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q 406 (568)
..+|+++||+++| ++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++.. ..++|++|
T Consensus 8 ~~~l~~~~ls~~y-~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEES-SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEe-CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 3589999999999 56 8999999999999999999999999999999999999999999988652 46999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
++. +++..|+.+++... .+ ...+.+.++++.+|+... .+++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 874 67788999987432 12 235667889999999876 4578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
++||+.++..+.+.|.++ +.|||+||||++++..+|+++|+ .+|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 999999999999998765 46999999999999998888764 45554
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=345.12 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=162.0
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
+|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. .|+|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999942 46899999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHhCCCC------Cc----cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 414 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLP------SY----AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 414 ~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~------~~----~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
...|+.+++............+++..+++. .. ...+++.+|||||||||+|||||+.+|+||||||||++
T Consensus 78 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 157 (237)
T 2cbz_A 78 QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 157 (237)
T ss_dssp CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 467999988643222222233333333321 10 11346789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH---hc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 484 LDIESIDALAEAIK---NY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 484 LD~~~~~~l~~~l~---~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.+...+.+.|. ++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 158 LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 216 (237)
T 2cbz_A 158 VDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQELL 216 (237)
T ss_dssp SCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHHh
Confidence 99999999999984 32 579999999999985 699999999999974 57776654
No 43
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.1e-42 Score=344.04 Aligned_cols=200 Identities=27% Similarity=0.363 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||+++|++. +++|+||||+|++|++++|+||||||||||+|+|+|+++| +|+|.++. +..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999432 4699999999999999999999999999999999999987 89998754 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcc----------ccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|+|++|++. ++. .|+.+++.... ....+.+.+.+..+++.... ...++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 999999974 565 59999876421 23445566777777764321 12356899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++. .||++++|++|+++. .|+.+++.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 241 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLL 241 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999876 569999999999986 599999999999974 57776654
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=357.18 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=172.6
Q ss_pred CCeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
...|+++||+++|+ ++.++|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++. +..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995 35679999999999999999999999999999999999998 899998764 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCC-----------CCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lA~al~ 469 (568)
|||+||++. +|+ .|+.+++........+++.++++.++|....+. ++.. |||||||||+|||||+
T Consensus 96 ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~-~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 96 FGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQ-FPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTT-STTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhh-cccccccccccccccCCHHHHHHHHHHHHHh
Confidence 999999974 665 599998753334456778899999999876664 5566 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||+|++|++|++.. .|+++++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEE-ESSHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999876 569999999998765 599999999999975 46666643
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.7e-40 Score=338.00 Aligned_cols=195 Identities=24% Similarity=0.363 Sum_probs=150.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
+.|+++||++.+ +++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +|+|++|++. ++
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--IM 111 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--CC
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--cC
Confidence 468999999864 5799999999999999999999999999999999999999999999876 5999999874 56
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 414 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 414 ~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
+. |+.+++. ............+..+++...... .++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 112 ~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~ 189 (290)
T 2bbs_A 112 PG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (290)
T ss_dssp SS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred cc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCccc
Confidence 64 9999887 322233334445555555432111 23579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 484 LDIESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 484 LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.++..+.+.+ .++ +.|||+||||++++. .||++++|++|+++. .|+.+++.
T Consensus 190 LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 246 (290)
T 2bbs_A 190 LDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (290)
T ss_dssp CCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHh
Confidence 9999999999974 333 579999999999986 599999999999974 57777664
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.2e-39 Score=359.87 Aligned_cols=201 Identities=29% Similarity=0.387 Sum_probs=172.3
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999543 6799999999999999999999999999999999999999999998754 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|+ .|+.+++.... +.+.+++.++++.+++.+.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 420 ALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred EEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 99999974 665 49999886432 3456677888888877644332 135799999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999876 579999999999997 699999999999974 57777654
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.8e-39 Score=360.30 Aligned_cols=202 Identities=28% Similarity=0.361 Sum_probs=172.7
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999533 6899999999999999999999999999999999999999999998764 2369
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|+ .|+.+++.... +.+.+++.++++.+++.+.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999974 666 49999986432 3456778888888877543322 245799999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||++++|++|+++. .|+.+++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 999999999999999999999999998765 679999999999986 699999999999975 577776643
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.8e-39 Score=356.81 Aligned_cols=202 Identities=29% Similarity=0.398 Sum_probs=169.9
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +.++
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999964 35799999999999999999999999999999999999999999998765 2469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|+. |+.|++.... ....+++.+.++..++...... .+..+|||||||||+|||||+.
T Consensus 418 ~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNI--LFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCC--CCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--cCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 99999974 6655 9999886432 3455667777776665432221 1346899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+.+...+.+.|.+. +.|+|+||||++.+.. ||++++|++|++++ .|+.+++.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~ 564 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIA 564 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999998765 5799999999999865 99999999999975 578777643
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-39 Score=358.86 Aligned_cols=202 Identities=28% Similarity=0.386 Sum_probs=171.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.-++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +.+++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 3599999999996567899999999999999999999999999999999999999999998764 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccCC----------CCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTIP----------IRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~~----------~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++... ...+.+++.+.++.+++.......| ..+|||||||||+|||||+.+
T Consensus 433 ~v~Q~~~--lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 433 IVLQDTI--LFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EECTTCC--CCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCc--ccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999974 665 5999988642 2234556777777776654333222 268999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||++||+.+...+.+.|.+. +.|+|+||||++.+.. ||++++|++|++++ .|+.+++.+
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999998765 6799999999999975 99999999999974 688877643
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-38 Score=354.09 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=169.1
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +.+|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 46999999999953 46799999999999999999999999999999999999999999998764 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|.. |+.|++.... ....+++.+.++..++ +.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 420 SAVPQETV--LFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEECSSCC--CCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHH
T ss_pred EEECCCCc--CcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHH
Confidence 99999974 6654 9999885332 2345555555555443 22222 356899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||++||+.+...+.+.|.+. +.|+|+||||++.+. .||++++|++|++++ .|+.+++.+
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999875 579999999999986 799999999999975 578877654
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.4e-38 Score=353.71 Aligned_cols=199 Identities=30% Similarity=0.425 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 336 LGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++++||+|+|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..++ +.+++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 8999999999542 4799999999999999999999999999999999999999999998764 23699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcC----CCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHH
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~----~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al 468 (568)
|++|++. +|+ .|+.+++..... .+.+++.++++.+++.+.... .+..+|||||||||+|||||
T Consensus 422 ~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPI--LFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCC--CCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCc--ccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 9999974 665 599999864321 456778888888886432211 13479999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||++++|++|++++ .|+.+++.
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 569 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITE-YGKHEELL 569 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECSCC--
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999875 679999999999996 599999999999975 46655543
No 52
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.5e-37 Score=354.51 Aligned_cols=295 Identities=19% Similarity=0.233 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHhcCCCc------cCCCch---------HHHHH---HhccCCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGLGFTT------IYIPSS---------RVHEI---MRTWKKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~~~------L~~ePn---------~L~~~---l~~~~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+..-... +||||. ||.++ |+.++.|||+||||++++. .||+|++|
T Consensus 380 LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG 458 (842)
T 2vf7_A 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAG 458 (842)
T ss_dssp SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcc
Confidence 466777777765543221 789992 55553 4567899999999999886 69999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+...... .. . + .. .. . .
T Consensus 459 ~~~G~iv-~~g~~~~~~~~~~~~~----~~---------~------------------l-----~~---~~----~--~- 491 (842)
T 2vf7_A 459 EKGGEIL-YSGPPEGLKHVPESQT----GQ---------Y------------------L-----FA---DR----H--T- 491 (842)
T ss_dssp GGCCSEE-EEECGGGGGGCTTCHH----HH---------H------------------H-----HT---CC----C--C-
T ss_pred cCCCEEE-EecCHHHHHhchHHHH----HH---------H------------------h-----hh---cc----c--c-
Confidence 577765 5788887643110000 00 0 0 00 00 0 0
Q ss_pred cCCccceeeeecCCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHH-HhcCc------
Q psy16366 314 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL-LKGEL------ 386 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~-l~G~~------ 386 (568)
+ +.......++|+++++++. .|+||||+|++|+++||+|+||||||||+++ |+|++
T Consensus 492 --~---------~~~~~~~~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~ 554 (842)
T 2vf7_A 492 --E---------PHTPREPAGWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQ 554 (842)
T ss_dssp --C---------CCCCCCCSCEEEEEEEEET------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC
T ss_pred --c---------ccccCCCCceEEEEeeeec------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcC
Confidence 0 0001123468999999852 5999999999999999999999999999996 77554
Q ss_pred -CCCccEEE-------------EC---CCeeEEEEecCCCCC--------------------------------------
Q psy16366 387 -TPNKGELR-------------KS---PRLRIGKFDQHSGEH-------------------------------------- 411 (568)
Q Consensus 387 -~p~~G~i~-------------~~---~~~~i~~~~q~~~~~-------------------------------------- 411 (568)
+|+.|.+. .. ...++.++.|.+...
T Consensus 555 ~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~ 634 (842)
T 2vf7_A 555 PVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSF 634 (842)
T ss_dssp -----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCS
T ss_pred CCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccc
Confidence 35444431 00 001133444433210
Q ss_pred ---------------------CCC------------------------CCCH--------HHHHHHhcCCC-HHHHHHHH
Q psy16366 412 ---------------------LFP------------------------DDTP--------CEYLMKLFNLP-YEKSRRQL 437 (568)
Q Consensus 412 ---------------------l~~------------------------~~~~--------~e~l~~~~~~~-~~~~~~~L 437 (568)
+++ ..++ .+.+....... ...+.++|
T Consensus 635 n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L 714 (842)
T 2vf7_A 635 NVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTL 714 (842)
T ss_dssp SSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHH
T ss_pred cccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHH
Confidence 000 1122 22211111111 23456789
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER 511 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~ 511 (568)
..+||......+++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|.++|+++ +.|||+||||++
T Consensus 715 ~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~ 794 (842)
T 2vf7_A 715 REVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794 (842)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 9999986443457899999999999999999996 7999999999999999999998888654 679999999999
Q ss_pred HHHhhCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 512 LIRETDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 512 ~i~~~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
++ ..||++++| .+|+++ ..|+++++.
T Consensus 795 ~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 795 VV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp HH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred HH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 99 689999999 688886 467776653
No 53
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-36 Score=343.91 Aligned_cols=295 Identities=24% Similarity=0.309 Sum_probs=192.5
Q ss_pred CChHHHHHHHHHhcCC---C---ccCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGLGF---T---TIYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~---~---~L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+..-. . -++|||. +|.++++++ |.|||+||||++++.. ||+|++|
T Consensus 465 LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag 543 (916)
T 3pih_A 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGG 543 (916)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcc
Confidence 4667777766654321 1 1789992 666666543 6899999999999976 9999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+.... +... ... . ... .
T Consensus 544 ~~~G~iv-~~G~~~e~~~~~~~------------------------~~~~-------~~l-----~--~~~----~---- 576 (916)
T 3pih_A 544 TNGGRVV-FQGTVDELLKNPDS------------------------SLTG-------EYL-----S--GKR----K---- 576 (916)
T ss_dssp GGCSEEE-EEECHHHHHHSCTT------------------------CHHH-------HHH-----H--SSS----C----
T ss_pred cCCCEEE-EeechhhhhcCchh------------------------cchh-------hhh-----h--ccc----c----
Confidence 788886 56887765321000 0000 000 0 000 0
Q ss_pred cCCccceeeeecCCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHH---------HHHhc
Q psy16366 314 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---------NLLKG 384 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLl---------k~l~G 384 (568)
...+.........+.+++++ ...|+||||+|+.|+++||+||||||||||+ +++.+
T Consensus 577 ---------~~~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~ 641 (916)
T 3pih_A 577 ---------ITVNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHK 641 (916)
T ss_dssp ---------CCCCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHC
T ss_pred ---------cccccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcc
Confidence 00011111112346666543 3469999999999999999999999999997 44544
Q ss_pred CcCCCc------cE------EEECC----------------------------------------------------Cee
Q psy16366 385 ELTPNK------GE------LRKSP----------------------------------------------------RLR 400 (568)
Q Consensus 385 ~~~p~~------G~------i~~~~----------------------------------------------------~~~ 400 (568)
...+.. |. +.... ...
T Consensus 642 ~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g 721 (916)
T 3pih_A 642 TKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQG 721 (916)
T ss_dssp CCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTT
T ss_pred ccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccC
Confidence 433322 21 11000 001
Q ss_pred EEEEecCCCCCCCC--------------------------------CCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCccc
Q psy16366 401 IGKFDQHSGEHLFP--------------------------------DDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAH 447 (568)
Q Consensus 401 i~~~~q~~~~~l~~--------------------------------~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~ 447 (568)
.|++.++.. +++ .+++.+.+......+ ...+.+.|..+||.....
T Consensus 722 ~G~i~~e~~--flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~l 799 (916)
T 3pih_A 722 QGYVKIEML--FLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKL 799 (916)
T ss_dssp SSEEEECCT--TSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBT
T ss_pred cceEEEeee--ccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhc
Confidence 233333221 111 123333332221111 234567899999976544
Q ss_pred cCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEE
Q psy16366 448 TIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 448 ~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~ 521 (568)
.+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|.+.|+++ +.|||+||||++++.. ||+|+
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIi 878 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHII 878 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEE
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 5688999999999999999999875 799999999999999999999988764 6799999999999965 99999
Q ss_pred EE------ECCeEEEEcCCHHHHH
Q psy16366 522 AL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 522 ~l------~~g~i~~~~g~~~~~~ 539 (568)
+| .+|+++ ..|+++++.
T Consensus 879 vLgp~gg~~~G~Iv-~~Gtpeel~ 901 (916)
T 3pih_A 879 DLGPEGGKEGGYIV-ATGTPEEIA 901 (916)
T ss_dssp EEESSSGGGCCEEE-EEESHHHHH
T ss_pred EecCCCCCCCCEEE-EEcCHHHHH
Confidence 99 788887 567777654
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.6e-36 Score=345.95 Aligned_cols=199 Identities=29% Similarity=0.458 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc-CcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-ELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
.|...|++++| +++.+|+|+||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|++. .++
T Consensus 435 ~L~~~~ls~~y-g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEE-CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence 45566999999 67889999999999999999999999999999999994 22 121 0112235788887642 356
Q ss_pred CCCCHHHHHHH-hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q psy16366 414 PDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492 (568)
Q Consensus 414 ~~~~~~e~l~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l 492 (568)
...|+.+++.. ..+. .+.++++|+.+||......+++.+|||||||||+|||||+.+|+||||||||||||+.++..|
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 78899998763 1222 567888999999964333458899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 493 AEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 493 ~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.++|++.+.|||+||||++++..+|+++++|++|+++.+.|+++++.+
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999998778999999999999999999999999999877899988754
No 55
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=6e-36 Score=342.71 Aligned_cols=297 Identities=22% Similarity=0.249 Sum_probs=194.7
Q ss_pred CChHHHHHHHHHhc-CCC---c--cCCCch---------HHHHHH---hccCCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGL-GFT---T--IYIPSS---------RVHEIM---RTWKKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~l-g~~---~--L~~ePn---------~L~~~l---~~~~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+.. +.. . +||||. ||.++| ++.|.||||||||++++. .||+|++|
T Consensus 522 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG 600 (993)
T 2ygr_A 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAG 600 (993)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccc
Confidence 46667776665532 322 1 789992 555444 456899999999999987 69999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+.... ...+ . + . ... ...
T Consensus 601 ~~gG~iv-~~G~~~e~~~~~~~----lt~~---------~------------------l-----~---g~~----~~~-- 634 (993)
T 2ygr_A 601 EHGGRIV-HSGPYDELLRNKDS----ITGA---------Y------------------L-----S---GRE----SIE-- 634 (993)
T ss_dssp GGCCSCC-EEECHHHHHHCTTC----HHHH---------H------------------H-----H---TSS----CCC--
T ss_pred cCCCEEE-EeeCHHHhhhhhHH----HHHH---------H------------------h-----c---cCc----ccc--
Confidence 577776 57888876532100 0000 0 0 0 000 000
Q ss_pred cCCccceeeeecCCC-CCCC-CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh-cC----c
Q psy16366 314 EKPREYIVKFRFPNP-PYLP-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GE----L 386 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~-~~~~-~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~-G~----~ 386 (568)
.+.. .... .++|++++++. ..|+||||+|+.|+++||+|+||||||||+++|+ |. +
T Consensus 635 -----------~~~~~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l 697 (993)
T 2ygr_A 635 -----------IPAIRRSVDPRRQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRL 697 (993)
T ss_dssp -----------CCSSCCCCCSSSEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHT
T ss_pred -----------CccccccCCCCceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhh
Confidence 0000 0111 36899999862 2699999999999999999999999999999853 32 2
Q ss_pred C---CCccEE-EECC---CeeE---------------------------------------EEEecCCCC----------
Q psy16366 387 T---PNKGEL-RKSP---RLRI---------------------------------------GKFDQHSGE---------- 410 (568)
Q Consensus 387 ~---p~~G~i-~~~~---~~~i---------------------------------------~~~~q~~~~---------- 410 (568)
. +..|.+ .... ..++ ||.+|.+..
T Consensus 698 ~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C 777 (993)
T 2ygr_A 698 NGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEAC 777 (993)
T ss_dssp TCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTT
T ss_pred cCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhccccccccccccccccccc
Confidence 1 234443 1111 0112 333332110
Q ss_pred ----------CCCC--------------------------------CCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCccc
Q psy16366 411 ----------HLFP--------------------------------DDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAH 447 (568)
Q Consensus 411 ----------~l~~--------------------------------~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~ 447 (568)
++.+ .+++.+.+......+ .....++|..+||.....
T Consensus 778 ~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lgL~~~~l 857 (993)
T 2ygr_A 778 TGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRL 857 (993)
T ss_dssp TSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTTGGGSBT
T ss_pred ccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccc
Confidence 0000 122333322111111 123456899999976333
Q ss_pred cCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEE
Q psy16366 448 TIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 448 ~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~ 521 (568)
.+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||+||||++++ ..||+++
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIi 936 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWII 936 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE
Confidence 4578999999999999999999865 999999999999999999999988754 67999999999998 5799999
Q ss_pred EE------ECCeEEEEcCCHHHHHH
Q psy16366 522 AL------EKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 522 ~l------~~g~i~~~~g~~~~~~~ 540 (568)
+| .+|+++ +.|+++++..
T Consensus 937 vL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 937 DLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp EEESSSTTSCSEEE-EEECHHHHHH
T ss_pred EECCCcCCCCCEEE-EecCHHHHHh
Confidence 99 578886 5678777643
No 56
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=8.6e-36 Score=340.29 Aligned_cols=295 Identities=22% Similarity=0.232 Sum_probs=192.8
Q ss_pred CChHHHHHHHHHhc-CCC---c--cCCCch---------HHHHHH---hccCCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGL-GFT---T--IYIPSS---------RVHEIM---RTWKKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~l-g~~---~--L~~ePn---------~L~~~l---~~~~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+.. +.. . +||||. ||.++| ++.|.|||+||||++++. .||+|++|
T Consensus 505 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG 583 (972)
T 2r6f_A 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAG 583 (972)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCcc
Confidence 35566666555432 221 1 789992 555544 456899999999999987 59999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+.... ... ..+ . ... ..
T Consensus 584 ~~gG~iv-~~G~~~e~~~~~~s-------------------------lt~------~~l-----~---g~~----~~--- 616 (972)
T 2r6f_A 584 IHGGEVV-AAGTPEEVMNDPNS-------------------------LTG------QYL-----S---GKK----FI--- 616 (972)
T ss_dssp GGCCSEE-EEECTTTTTTCTTC-------------------------TTH------HHH-----H---TSS----CC---
T ss_pred CCCCEEE-EecCHHHHHhhhHH-------------------------HHH------HHh-----c---CCc----cc---
Confidence 677776 56777765321000 000 000 0 000 00
Q ss_pred cCCccceeeeecCCC-CCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh-cCc-----
Q psy16366 314 EKPREYIVKFRFPNP-PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GEL----- 386 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~-G~~----- 386 (568)
..|.. .....++|++++++. ..|+||||+|+.|+++||+|+||||||||+++|+ |.+
T Consensus 617 ----------~~~~~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~ 680 (972)
T 2r6f_A 617 ----------PIPAERRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680 (972)
T ss_dssp ----------CCCSSCCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHH
T ss_pred ----------cCccccccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 00110 111246899999862 3699999999999999999999999999999853 322
Q ss_pred --CCCccE-------------EEECC-------C-----------------------eeEEEEecCCCCC----------
Q psy16366 387 --TPNKGE-------------LRKSP-------R-----------------------LRIGKFDQHSGEH---------- 411 (568)
Q Consensus 387 --~p~~G~-------------i~~~~-------~-----------------------~~i~~~~q~~~~~---------- 411 (568)
.+..|. |.+.. + ..+||++|.+...
T Consensus 681 ~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~ 760 (972)
T 2r6f_A 681 RAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACH 760 (972)
T ss_dssp CCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTT
T ss_pred CCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccc
Confidence 123342 11110 0 0123444432110
Q ss_pred ----------CC------------------------C--------CCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCcccc
Q psy16366 412 ----------LF------------------------P--------DDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAHT 448 (568)
Q Consensus 412 ----------l~------------------------~--------~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~~ 448 (568)
+. . .+|+.+.+....... .....++|..+||......
T Consensus 761 g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~ 840 (972)
T 2r6f_A 761 GDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLG 840 (972)
T ss_dssp TCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTT
T ss_pred cccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCccccc
Confidence 00 0 123333332211111 1234578999999863334
Q ss_pred CCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWA 522 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~ 522 (568)
+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||+||||++++. .||++++
T Consensus 841 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIiv 919 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIID 919 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEE
Confidence 588999999999999999999865 999999999999999999999988754 679999999999984 7999999
Q ss_pred E------ECCeEEEEcCCHHHH
Q psy16366 523 L------EKKNIRKFNGDFDDY 538 (568)
Q Consensus 523 l------~~g~i~~~~g~~~~~ 538 (568)
| .+|+++ ..|+++++
T Consensus 920 L~p~gG~~~G~Iv-~~g~~~el 940 (972)
T 2r6f_A 920 LGPEGGDRGGQIV-AVGTPEEV 940 (972)
T ss_dssp ECSSSTTSCCSEE-EEESHHHH
T ss_pred EcCCCCCCCCEEE-EecCHHHH
Confidence 9 688886 45666654
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-35 Score=354.81 Aligned_cols=202 Identities=27% Similarity=0.382 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.-++++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|..++ +..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 358999999999642 4799999999999999999999999999999999999999999999865 346
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcc-------c---cCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA-------H---TIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~-------~---~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|||++|++. +|.. |+.+++.... ....+++.+.+...++.... + .....+|||||||||+|||||+
T Consensus 466 i~~v~Q~~~--l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPV--LFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCC--CCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCc--cCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 999999984 6655 9999886432 34566666665554432211 1 1245689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||++||+++...+.+.|... +.|+|+|||+++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999988754 6799999999999976 99999999999974 577777643
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-36 Score=329.66 Aligned_cols=184 Identities=28% Similarity=0.312 Sum_probs=149.9
Q ss_pred EE-EeeEEEeCCCc-eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE---------EEC---------
Q psy16366 337 GL-HDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---------RKS--------- 396 (568)
Q Consensus 337 ~~-~~v~~~y~~~~-~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i---------~~~--------- 396 (568)
++ +||+++| ++. .+++++| +|.+||++||+||||||||||||+|+|+++|++|++ ...
T Consensus 22 ~~~~~ls~~y-g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 22 QLEEDCVHRY-GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp --CCCEEEEC-STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hHhcCcEEEE-CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 44 5899999 454 5899999 999999999999999999999999999999999984 111
Q ss_pred ----CCeeEEEEecCCCC--CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 397 ----PRLRIGKFDQHSGE--HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 397 ----~~~~i~~~~q~~~~--~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
....+++++|.... .++. .++.+++.... ..+.+.++|+.+||....+ +++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~-~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVK-GKVIELLKKAD--ETGKLEEVVKALELENVLE-REIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCC-SBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhh-ccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence 12357788886421 1111 26666554221 1234678999999987654 5889999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
+|+||||||||||||+.++..+.++|+++ +.|||+||||++++..+||++++|.++
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999988765 789999999999999999999999864
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-35 Score=330.77 Aligned_cols=182 Identities=26% Similarity=0.312 Sum_probs=151.4
Q ss_pred EeeEEEeCCCc-eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE---------EC------------
Q psy16366 339 HDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KS------------ 396 (568)
Q Consensus 339 ~~v~~~y~~~~-~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~---------~~------------ 396 (568)
+||+++| ++. .+|+++| +|.+|++++|+||||||||||||+|+|+++|++|++. ..
T Consensus 95 ~~ls~~y-g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRY-GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEEC-STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEE-CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 8999999 555 5899999 9999999999999999999999999999999999851 11
Q ss_pred -CCeeEEEEecCCCC--CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 397 -PRLRIGKFDQHSGE--HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 397 -~~~~i~~~~q~~~~--~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
....+++++|.... .++. .++.+++... ...+.+.++|+.+||....+ +++.+|||||||||+|||||+.+|+
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~-~tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~-~~~~~LSGGekQRvaIAraL~~~P~ 248 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVK-GKVRELLKKV--DEVGKFEEVVKELELENVLD-RELHQLSGGELQRVAIAAALLRKAH 248 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCC-SBHHHHHHHT--CCSSCHHHHHHHTTCTTGGG-SBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred hhhcceEEeechhhhchhhcc-ccHHHHhhhh--HHHHHHHHHHHHcCCCchhC-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12357788876421 1222 2777766432 12235678999999987665 5789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|.++
T Consensus 249 lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 249 FYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999988766 789999999999999999999999865
No 60
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.3e-35 Score=350.60 Aligned_cols=199 Identities=29% Similarity=0.382 Sum_probs=170.4
Q ss_pred eEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 335 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
-++++||+|+|++ +.++|+|+||+|++|+.+|||||+|||||||+++|.|+++|++|+|..++ +.+|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 5899999999964 45899999999999999999999999999999999999999999999865 3479
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|+|. +|. .|+.+++... ...+.+++.++++..++.+..... .-..||||||||++||||+++
T Consensus 495 ~~v~Q~~~--Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPA--LFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCcce--eeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 99999984 554 5899998643 245678888888777654322211 235899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+|||||||||+||+++...+.+.|.++ +.|+|+|||++..+. .||+|++|++|+|++ .|+++++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE-EECHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec-cCCHHHH
Confidence 99999999999999999999999999876 689999999999986 589999999999986 4777665
No 61
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=5e-37 Score=338.20 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=125.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeee-eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~v-s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
.+.+.++++++.|++ |+.+ +..|.+|++++|+||||||||||+++++|...|. |+ ..+.+.+|++..
T Consensus 255 ~~~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~- 322 (525)
T 1tf7_A 255 TQRSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA- 322 (525)
T ss_dssp CCCCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH-
T ss_pred ccccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH-
Confidence 345677888877732 3322 4599999999999999999999999999999885 54 124455555321
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE---- 487 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~---- 487 (568)
.+.... ..++++..+ +..+|+..... .++..|||||+||+++|+++..+|++||+| ||++||..
T Consensus 323 -----~l~~~~-~~~g~~~~~----~~~~g~~~~~~-~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~ 390 (525)
T 1tf7_A 323 -----QLLRNA-YSWGMDFEE----MERQNLLKIVC-AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNN 390 (525)
T ss_dssp -----HHHHHH-HTTSCCHHH----HHHTTSEEECC-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHH
T ss_pred -----HHHHHH-HHcCCCHHH----HHhCCCEEEEE-eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChH
Confidence 111221 123444322 22455544443 356899999999999999999999999999 99999998
Q ss_pred -HHHHHHHHH---HhcCceEEEEecch----------HHHHhhCceEEEEECCe
Q psy16366 488 -SIDALAEAI---KNYQGGVILVSHDE----------RLIRETDCELWALEKKN 527 (568)
Q Consensus 488 -~~~~l~~~l---~~~~~tvi~vsHd~----------~~i~~~~~~i~~l~~g~ 527 (568)
.+..+.+++ ++.+.|||+||||. ..+..+||++++|.+|+
T Consensus 391 ~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 391 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 777665555 45678999999999 88888999999998765
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=313.10 Aligned_cols=186 Identities=26% Similarity=0.335 Sum_probs=143.7
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------C----------
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------R---------- 398 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~---------- 398 (568)
|++++|+++...+++++ .+.+|+++||+||||||||||||+|+|+++|++|+|.... .
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 57889954445677777 5899999999999999999999999999999999873110 0
Q ss_pred ---eeEEEEecCCCC---CC-CCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 ---LRIGKFDQHSGE---HL-FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 ---~~i~~~~q~~~~---~l-~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
....+.+|.... .+ ....++.+.+........+.+.++++.+||....+ +++.+|||||||||+||+||+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-SCTTTCCHHHHHHHHHHHHHHSC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-CChHHCCHHHHHHHHHHHHHHhC
Confidence 001111221100 00 01112333333222334567888999999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|.++.
T Consensus 240 p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999998876 5799999999999999999999998764
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1e-32 Score=312.21 Aligned_cols=190 Identities=22% Similarity=0.252 Sum_probs=130.5
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHH---------------------HHHhcCcCCCccEEE-------EC---
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---------------------NLLKGELTPNKGELR-------KS--- 396 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLl---------------------k~l~G~~~p~~G~i~-------~~--- 396 (568)
...+|+||||+|++|+++||+||||||||||+ +++.|+..|+.|.|. ..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 999999999866553 21
Q ss_pred ----CCeeEEEEecCCC-----------------CCCCCCCCHHHHHHHhcCC--C---H----------HHHHHHHHhC
Q psy16366 397 ----PRLRIGKFDQHSG-----------------EHLFPDDTPCEYLMKLFNL--P---Y----------EKSRRQLGMF 440 (568)
Q Consensus 397 ----~~~~i~~~~q~~~-----------------~~l~~~~~~~e~l~~~~~~--~---~----------~~~~~~L~~~ 440 (568)
.+..+|+++|.+. ...+..+++.+++...... . . ......|..+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1223444444321 1122344555554321110 0 0 0111348889
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHh
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRE 515 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~ 515 (568)
||......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.+.|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 998654456889999999999999999999998 99999999999999999999888765 679999999999876
Q ss_pred hCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 516 TDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 516 ~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
.||++++| ++|+++ +.|+++++.
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~ 297 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 297 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEE-EEECHHHHH
T ss_pred hCCEEEEecccccccCCEEE-EecCHHHHh
Confidence 59999999 788886 567777764
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.3e-32 Score=302.31 Aligned_cols=182 Identities=24% Similarity=0.327 Sum_probs=139.2
Q ss_pred eeEEEeCCCceeeeeeeEEE-eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-----------ECC----------
Q psy16366 340 DVTFGYPGGKVLLEKVNFGL-DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSP---------- 397 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i-~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 397 (568)
+++.+|+.+. |+-..|.+ ++|+++||+||||||||||+|+|+|+++|++|+|. ...
T Consensus 4 ~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4667883332 44444544 59999999999999999999999999999999872 111
Q ss_pred ---CeeEEEEecCCC--CCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 398 ---RLRIGKFDQHSG--EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 398 ---~~~i~~~~q~~~--~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
...+....|... ..++ ..++.+.+.... ....+.++++.+++....+ +++.+|||||||||+|||||+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFL-KGTVNEILTKID--ERGKKDEVKELLNMTNLWN-KDANILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcccchhhccchhhhhhhhc-cCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCC
Confidence 112333333321 0112 225555443221 1234677899999987665 578999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+++++.+|.
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999876 6799999999999999999999998653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-33 Score=301.70 Aligned_cols=205 Identities=16% Similarity=0.089 Sum_probs=161.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc-E-EEECC--CeeEEEEecCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-E-LRKSP--RLRIGKFDQHS 408 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G-~-i~~~~--~~~i~~~~q~~ 408 (568)
.++++++||++.| + ++||+|.+|++++|+||||||||||+|+|+|+++|++| + |.++. +..++|++|+.
T Consensus 116 ~~mi~~~nl~~~y-~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFML-E------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHH-H------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehh-h------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 4688899999998 2 79999999999999999999999999999999999999 8 87653 55688999976
Q ss_pred CC-CCCCCCCHHHHHHHh---cCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH--HccCCCe----EEE
Q psy16366 409 GE-HLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL--TLNNPDI----LIL 477 (568)
Q Consensus 409 ~~-~l~~~~~~~e~l~~~---~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a--l~~~p~l----LlL 477 (568)
.. .++...++.+++... .+. ..+.+..++..+|+..... +.+|||||||||+|||+ |+.+|++ |||
T Consensus 189 ~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 189 SATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 31 122334554443110 010 1122445677888876543 67999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecchH------HHHhhCce-----EEEEE-CCeEEEEcCCHHHHHHHHHH
Q psy16366 478 DE-PTNNLDIESIDALAEAIKNYQGGVILVSHDER------LIRETDCE-----LWALE-KKNIRKFNGDFDDYREKLLT 544 (568)
Q Consensus 478 DE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~i~~~~~~-----i~~l~-~g~i~~~~g~~~~~~~~~~~ 544 (568)
|| ||++||+. ...|.+++++++.|+|+||||.+ ++..+|++ +++|. +|+++ .++.++..+....
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~~~~~~ 342 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKRSLQRT 342 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHhhhhHH
Confidence 99 99999999 88888999999999999999988 88899999 99999 99987 6887766432223
Q ss_pred HHhhhh
Q psy16366 545 SLGEAM 550 (568)
Q Consensus 545 ~~~~~~ 550 (568)
.+.+++
T Consensus 343 ~i~~~f 348 (460)
T 2npi_A 343 SIREYF 348 (460)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 344444
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.1e-28 Score=260.08 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=71.2
Q ss_pred CCHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEE----EC
Q psy16366 454 LSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL----EK 525 (568)
Q Consensus 454 LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l----~~ 525 (568)
|||||||||+||++|+.+| ++|||||||+|||+.+...|.+.|+++ ++|||+||||++++. .||++++| .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999988 489999999998874 79999999 89
Q ss_pred CeEEE
Q psy16366 526 KNIRK 530 (568)
Q Consensus 526 g~i~~ 530 (568)
|+++.
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98754
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=3.3e-29 Score=243.04 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=99.7
Q ss_pred EeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE--------CCCeeEEEEecCCCCCCCCC
Q psy16366 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK--------SPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 344 ~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~--------~~~~~i~~~~q~~~~~l~~~ 415 (568)
+| +++.+|++| .+|++++|+|||||||||||++|+|+ +|++|+|.. ..+..+||++|++.+.+...
T Consensus 9 ~~-g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 9 TL-GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY 82 (208)
T ss_dssp SH-HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred CH-hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence 35 456789986 89999999999999999999999999 999998842 12346888888763322111
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 416 ~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
... ....... .....+.++++. ++ ||||||+|||||+.+|+||||||||++ +...+.+
T Consensus 83 ~~~--~~~~~~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~ 141 (208)
T 3b85_A 83 LRP--LHDALRDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM 141 (208)
T ss_dssp THH--HHHHHTTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH
T ss_pred HHH--HHHHHHHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH
Confidence 000 0111111 122345555554 33 999999999999999999999999999 8888888
Q ss_pred HHHhc--CceEEEEecchHHHHh
Q psy16366 495 AIKNY--QGGVILVSHDERLIRE 515 (568)
Q Consensus 495 ~l~~~--~~tvi~vsHd~~~i~~ 515 (568)
+|.++ +.||| ||||++++..
T Consensus 142 ~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 142 FLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHTTBCTTCEEE-EEEC------
T ss_pred HHHHhcCCCEEE-EECCHHHHhC
Confidence 88876 46888 9999998764
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=4.7e-26 Score=239.41 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCCCCCHhHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKARVALAELTL------NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~ 519 (568)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.+...+.+.|.++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 467899999999999999999 799999999999999999999999999876 5799999999998 467899
Q ss_pred EEEEECCeEE
Q psy16366 520 LWALEKKNIR 529 (568)
Q Consensus 520 i~~l~~g~i~ 529 (568)
+++|.+|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999985
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=4.7e-27 Score=220.81 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=101.4
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHH
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 433 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~ 433 (568)
||||+|++|++++|+||||||||||++++.+-... .......|+++|++....+.. ...+.+. ..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~~~~~-~~~~~~~--------~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQTVTG-AAFDVLH--------YI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCGGGHH-HHHHHHH--------HH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccchhhHH-HHHHHHH--------HH
Confidence 68999999999999999999999999986643221 111111256666653222111 1111111 11
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----------------HHHHHHHHHH
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----------------SIDALAEAIK 497 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~l~ 497 (568)
.......|...... .....||||||||+||++++.+|++|+|||||++||+. ....+.+.|.
T Consensus 66 ~~~~~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~ 143 (171)
T 4gp7_A 66 VSKRLQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIK 143 (171)
T ss_dssp HHHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHST
T ss_pred HHHHHhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhh
Confidence 12223345543333 23567999999999999999999999999999999999 5577777754
Q ss_pred h---cCceEEEEecchHHHHhh
Q psy16366 498 N---YQGGVILVSHDERLIRET 516 (568)
Q Consensus 498 ~---~~~tvi~vsHd~~~i~~~ 516 (568)
+ .+.|+|+||||++++..+
T Consensus 144 ~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 144 GLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp THHHHTCSEEEEECSHHHHHHE
T ss_pred hHHhcCCcEEEEeCCHHHhhhh
Confidence 3 377999999999999764
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=2.3e-26 Score=217.63 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=110.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCC-ccEEEE-----CCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPN-KGELRK-----SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~-----~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
+++|+||||||||||+++|+|++... .|.... ..+.++||++|++. . .+.+ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~--~------~~~~--------------~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE--G------KKKI--------------F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT--C------CEEE--------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc--H------HHHH--------------H
Confidence 68999999999999999999998532 343211 12356888888751 0 0100 0
Q ss_pred HhCCCCC-ccccCCCCCCCHhHHHHHHHHHH-----HccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCceEEEEe--
Q psy16366 438 GMFGLPS-YAHTIPIRDLSGGQKARVALAEL-----TLNNPDILILDE--PTNNLDIESIDALAEAIKNYQGGVILVS-- 507 (568)
Q Consensus 438 ~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~a-----l~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi~vs-- 507 (568)
..+++.. ....+++.+||||||||++||++ ++.+|++||||| ||++||+...+.+.+.+.+.+.|+|++|
T Consensus 60 ~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 60 SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp EETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred HhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 1111111 12234678899999999999996 999999999999 9999999999999999998777788888
Q ss_pred -cchHHHHhhCceEEEEECCeEEEEc-CCHHHHHHHHHHH
Q psy16366 508 -HDERLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTS 545 (568)
Q Consensus 508 -Hd~~~i~~~~~~i~~l~~g~i~~~~-g~~~~~~~~~~~~ 545 (568)
||.+++..+|++ .+|++..+. .+.+++.+++.+.
T Consensus 140 ~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 140 RDVHPLVKEIRRL----PGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp SCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHHHHH
T ss_pred CCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHHHHH
Confidence 599999999887 345554432 3445555555443
No 71
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.90 E-value=2e-23 Score=209.86 Aligned_cols=187 Identities=19% Similarity=0.224 Sum_probs=120.6
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHH-
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV- 136 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v- 136 (568)
.+|+++|++++|+++++|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++...........
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheE
Confidence 47999999999999999999999999999999999999999999999999643 445666665555432221111100
Q ss_pred ---HhccHHHHH-HHHHHHHHhh--ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC-------c-
Q psy16366 137 ---LSADKNRVK-LLKECSKLER--DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT-------T- 195 (568)
Q Consensus 137 ---~~~~~~~~~-l~~~~~~l~~--~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~-------~- 195 (568)
.+....... ...+.-.+.. ........+..++.+.+. .....++++++|..++..-+. +
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 000000000 0000000000 011122344555555543 223468888888777654432 2
Q ss_pred --cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 196 --IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 196 --L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|+|||. .|.++.++.+.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~-g~~~ 233 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC-GTPE 233 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 889991 34344344356999999999999999999999999999864 4443
No 72
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.90 E-value=3.7e-23 Score=208.68 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=118.0
Q ss_pred cceEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----
Q psy16366 58 VDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---- 132 (568)
.+|+++|++++|++ ..+|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++.......
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHh
Confidence 47999999999975 469999999999999999999999999999999999642 34455555554442111000
Q ss_pred --HHHHHhccHH-HH--HHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 133 --VNIVLSADKN-RV--KLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 133 --~~~v~~~~~~-~~--~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
+..+++.... .. ...+.. .+.. ..... ...+..++++.+. .....++++++|..++..-...
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDV-SFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHH-HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEcCcccccccCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0001111000 00 000000 0000 00001 1233444444432 2234688888888877654433
Q ss_pred ---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 ---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 ---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .|.++.++.+.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~-g~~~~ 230 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ-GNPKE 230 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE-ECHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 889992 34444323488999999999999999999999999999865 55444
No 73
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=1.8e-23 Score=217.53 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=120.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC----c--hhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS----D--DSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~----~--~~~ 132 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.|.+.++++... . ...
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCC
Confidence 6999999999999999999999999999999999999999999999999643 3344554444333100 0 000
Q ss_pred HHHHHhccHHHHHHHHHHHHHhh-cc-----CCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNRVKLLKECSKLER-DE-----SGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~-~~-----~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+++... ...-+...+.+.. +. ......++.++++.+. .....++++++|.+|+..-...
T Consensus 82 ig~vfQ~~~-l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 82 LGYLVQEGV-LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CEEECTTCC-CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCc-CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 111111100 0000000000100 00 0011334555555542 2334688899998887654433
Q ss_pred cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 196 IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 196 L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
|+|||. .|.+++++.+.|+|+||||++++..+||||++|++|++...+.+
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 889991 35556667789999999999999999999999999999875443
No 74
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.89 E-value=3.5e-23 Score=216.89 Aligned_cols=178 Identities=22% Similarity=0.249 Sum_probs=119.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-----------------EEEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID-----------------LLYC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~-----------------i~~~ 121 (568)
.|+++|++++|++..+|+|+||+|.+||+++|+||||||||||||+|+|... |..+. +.++
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999999999999999999999999999999999999999999743 23333 3444
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+....+. +..+.+... + ............+..++.+.+. .....++++++|.+|+..-.
T Consensus 81 fQ~~~l~p~ltV~eni~~~------~-----~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~ 149 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFG------L-----KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHH------H-----HHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred ecCCcCCCCCCHHHHHHHH------H-----HHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH
Confidence 454432221 222211100 0 0000000011234444444432 22346888888887765432
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. |+|||. .|.++.++.+.|+|+||||++++..+||||++|++|+++..+.+.+.|
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 22 889991 455555566899999999999999999999999999998765443333
No 75
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.89 E-value=8.5e-23 Score=212.69 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=119.6
Q ss_pred cceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH
Q psy16366 58 VDIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~ 133 (568)
.+|+++|++++|++ ..+|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++........
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHH
Confidence 47999999999953 469999999999999999999999999999999999643 344555554444432211110
Q ss_pred -------HHHHhcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 134 -------NIVLSAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 134 -------~~v~~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
..+++.. .....+. ...............+..++++.+. .....++++++|..++..-.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~-~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVA-LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 0011100 0000000 0000000000011234445555442 12346888999988876554
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.. |+|||. .|.++.++.+.|||+||||++++..+||||++|++|+++.. |+.+
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~-g~~~ 249 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVS 249 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC-CBHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 43 889991 45555555689999999999999999999999999999864 4443
No 76
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=1.3e-22 Score=198.87 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=113.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA------ 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~------ 132 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|... |..+.+.+.++++.......
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHh
Confidence 6999999999998899999999999999999999999999999999999642 34455555444432211100
Q ss_pred --HHHHHhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 133 --VNIVLSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 133 --~~~v~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
+..+.+... .....+................+..++.+.+. .....++++++|..++..-...
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 000001000 00000000000000000001223344444432 1234578888888877654443
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
|+|||. .|.++.++ +.|||+||||.+++ .+||+|++|++|+++..
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 889991 33333333 78999999999998 79999999999999754
No 77
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=8.9e-23 Score=204.65 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=116.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC--chhHH---
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS--DDSAV--- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~--~~~~~--- 133 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.+.++++... .....
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCc
Confidence 6999999999998899999999999999999999999999999999999642 3345555444443200 00000
Q ss_pred -HHHHhccHH--HHHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 134 -NIVLSADKN--RVKLLKECSK-LERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 134 -~~v~~~~~~--~~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
..+.+.... .....+.... ........ ...++.++.+.+. .....++++++|..++..-+..
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 001110000 0000000000 00000000 1223444444432 1234678888888776544433
Q ss_pred cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+|||. .|.++.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 246 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE-GKPEDL 246 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 889991 34444333 78999999999999999999999999999864 555443
No 78
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.9e-22 Score=199.78 Aligned_cols=187 Identities=13% Similarity=0.183 Sum_probs=115.7
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.+.+.++.......
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTT
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCC
Confidence 46999999999998899999999999999999999999999999999999643 33344444333332111000
Q ss_pred HHHHHhccHH--HHHHHHHHHHHhhcc--CCC-hHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKN--RVKLLKECSKLERDE--SGD-NQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~--~~~l~~~~~~l~~~~--~~~-~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+.... .....+.. .+.... ... ...++.++.+.+. .....+.++++|..++..-...
T Consensus 83 i~~v~q~~~l~~~ltv~enl-~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENL-MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHH-HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHH-HHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000000000 00000000 000000 011 1223344443331 2334688888888776654433
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .+.+++++ .+.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 225 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE-GKASE 225 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-EEHHH
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 889992 33333332 478999999999999999999999999999754 54443
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=2.6e-23 Score=214.92 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceE--
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-- 520 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i-- 520 (568)
.++..|||||||||+||++|+ .+|++|||||||++||+.....+.+.|.++ +.+||+|||+.++ ..+||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~~~~ 293 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADLLHG 293 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCceEEE
Confidence 467899999999999999997 689999999999999999999999999877 5689999999764 5678976
Q ss_pred EEEECCeEEEEcCCHHH
Q psy16366 521 WALEKKNIRKFNGDFDD 537 (568)
Q Consensus 521 ~~l~~g~i~~~~g~~~~ 537 (568)
++|.+|.......+.++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 78888876555555444
No 80
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=8.5e-23 Score=204.91 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=115.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC----------C
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA----------S 128 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~----------~ 128 (568)
+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||+|+|+|... |..+.+.+.++++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccccccccccc
Confidence 6999999999998899999999999999999999999999999999999642 334555554443320 0
Q ss_pred chh---H----HHHHHhccHH--HHHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh--------ccCCCChHHHHHHH
Q psy16366 129 DDS---A----VNIVLSADKN--RVKLLKECSK-LERDESGD---NQLRLTEVYDELK--------SIEADAAEPRARRI 187 (568)
Q Consensus 129 ~~~---~----~~~v~~~~~~--~~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~--------~~~~~~~~~~~~~~ 187 (568)
... . +..+.+.... .....+.... ........ ...+..++.+.+. .....++++++|..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 000 0 0000110000 0000000000 00000000 1123333444321 12346788888877
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++..-+.. |+|||. .|.++.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 240 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE-GDPEQV 240 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 76543332 889992 34444333 78999999999999999999999999999864 555443
No 81
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=9.5e-23 Score=212.19 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=120.0
Q ss_pred CccceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE----------------
Q psy16366 56 NSVDIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL---------------- 118 (568)
Q Consensus 56 ~~~~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i---------------- 118 (568)
.+.+|+++|++++| +++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCc
Confidence 35689999999999 88889999999999999999999999999999999999743 233333
Q ss_pred -EEEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 119 -LYCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 119 -~~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
.++.|+...... +..+.+.- .+ ........+...++.++.+.+. .....++++++|.+|+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~------~l-----~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSF------GL-----REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHH------HH-----HHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHH------HH-----HHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 444444322221 22111110 00 0000000001233444444432 1234688899988887
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
..-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 231 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF-GTPE 231 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 654443 889991 45555555689999999999999999999999999999865 4443
No 82
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.7e-22 Score=201.95 Aligned_cols=178 Identities=20% Similarity=0.269 Sum_probs=116.1
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-----------------
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY----------------- 120 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~----------------- 120 (568)
..|+++|++++|+++.+|+++||+|.+|++++|+||||||||||||+|+|... |..+.+.+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEE
Confidence 47899999999998899999999999999999999999999999999999643 33344443
Q ss_pred -EeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 121 -CEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 121 -~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
+.|+...... +..+.+. +. ..+..........++.++.+.+. .....+.++++|..++..
T Consensus 92 ~v~q~~~l~~~ltv~enl~--------~~---~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLR--------FV---AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp EECTTCCCCTTSBHHHHHH--------HH---HHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHH--------HH---HHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 3333222111 1111110 00 00000000000123344444432 233468888888877655
Q ss_pred CCCc----cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 192 GFTT----IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
-+.. |+|||. .+.++++ +.+.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 233 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTVEEL 233 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe-cCHHHH
Confidence 4333 889992 3333332 2378999999999999999999999999999864 554443
No 83
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=2.7e-22 Score=200.15 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=118.5
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc----eEEEEeccccCC-chhH
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI----DLLYCEQEVEAS-DDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~----~i~~~~qe~~~~-~~~~ 132 (568)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|...|..+.+ .+.|+.|+.... ..+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 699999999998 8899999999999999999999999999999999999743322221 356777775443 2233
Q ss_pred HHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch
Q psy16366 133 VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS 201 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn 201 (568)
.+.+......... ...........++.++.+.+. .....+.++++|..++..-+.. |+|||.
T Consensus 84 ~enl~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 84 LDIVLMGRSTHIN-------TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp HHHHHGGGGGGSC-------TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred HHHHHHhhhhhcc-------cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3322211000000 000000001123333444331 2334688888887776543332 889991
Q ss_pred ---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 202 ---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 202 ---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++.++++ +.+.|||+||||.+++..+||+|++|++|+ + +.|+.+.+
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 3444443 337899999999999999999999999999 5 45655443
No 84
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.5e-22 Score=211.43 Aligned_cols=175 Identities=21% Similarity=0.217 Sum_probs=118.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-----------------EEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-----------------LYC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i-----------------~~~ 121 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+ .++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEE
Confidence 5899999999988899999999999999999999999999999999999643 333344 344
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS-------IEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+....+. +..+.+.- .+ ........+...++.++.+.+.. ....++++++|.+|+..-.
T Consensus 81 ~Q~~~l~~~ltv~eni~~------~~-----~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAF------PL-----ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp CTTCCCCTTSCHHHHHHH------HH-----HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred ecCcccCCCCCHHHHHHH------HH-----HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH
Confidence 444322211 11111110 00 00000000112334444544321 2346888899888876544
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.. |+|||. .|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 219 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV-GTPD 219 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 33 889991 45555555689999999999999999999999999999865 4433
No 85
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.88 E-value=1.3e-22 Score=211.56 Aligned_cols=172 Identities=21% Similarity=0.242 Sum_probs=117.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------EE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------------YC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~-----------------~~ 121 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+. |+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEE
Confidence 5899999999998899999999999999999999999999999999999643 3334443 34
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCC---ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHh
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESG---DNQLRLTEVYDELK-------SIEADAAEPRARRILAG 190 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~---~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~ 190 (568)
.|+....+. +..+.+.-. + ..... +...++.++.+.+. .....++++++|.+|+.
T Consensus 81 ~Q~~~l~~~ltv~eni~~~-------------~-~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFP-------------L-RARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGG-------------G-SSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ecCcccCCCCCHHHHHHHH-------------H-HhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 443322211 111111100 0 00000 00123444554432 12346888999888876
Q ss_pred cCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 191 LGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 191 lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~ 219 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY-GTPD 219 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 54443 889991 45555555689999999999999999999999999999865 4443
No 86
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=2.7e-26 Score=243.47 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=131.4
Q ss_pred ceeeeeeeEEEeCCC--------------------EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe--eEEEEec
Q psy16366 349 KVLLEKVNFGLDMES--------------------RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL--RIGKFDQ 406 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge--------------------~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~i~~~~q 406 (568)
+.++++|||+|.+|+ ++||+||||||||||+|+|+|+++|++|+|...... +.++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999998754321 2378888
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHh--HHHHHHHHHHHcc----------CCCe
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG--QKARVALAELTLN----------NPDI 474 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG--qkqRv~lA~al~~----------~p~l 474 (568)
++ .++..++.+++... .....+.++|..+++..... .+ . ||+| |+||++||++|+. +|++
T Consensus 116 ~~---~~~~ltv~D~~g~~--~~~~~~~~~L~~~~L~~~~~-~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIG--STNFPPDTYLEKMKFYEYDF-FI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp CS---SCTTEEEEECCCGG--GSSCCHHHHHHHTTGGGCSE-EE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred cc---ccCCeeehHhhccc--chHHHHHHHHHHcCCCccCC-eE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 74 24445554432111 12234677889999876432 23 3 9999 9999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc------------CceEEEEecchHH--HHhhCceEE-EEECCe
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY------------QGGVILVSHDERL--IRETDCELW-ALEKKN 527 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~------------~~tvi~vsHd~~~--i~~~~~~i~-~l~~g~ 527 (568)
|+|||||++||+.++..+.+.|+++ ..+|+++||++.. +..+|+++. .+..|.
T Consensus 188 llLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 188 DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 9999999999999888887776554 1358889999887 788887774 344443
No 87
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=2.8e-22 Score=208.38 Aligned_cols=171 Identities=23% Similarity=0.254 Sum_probs=117.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc-------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV------------- 125 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~------------- 125 (568)
+|+++|++++|+++ +|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+.++++
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEE
Confidence 47899999999888 9999999999999999999999999999999999743 3344444433332
Q ss_pred ----cCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 126 ----EASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 126 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
..... +..+.+.- .+ ... ..... .++.++.+.+. .....++++++|.+|+..-.
T Consensus 78 ~Q~~~l~~~ltv~enl~~------~~-----~~~--~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEF------GM-----RMK--KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp CTTCCCCTTSCHHHHHHH------HH-----HHH--CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred ecCcccCCCCCHHHHHHH------HH-----HHc--CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11111 11111100 00 000 01111 34455555442 12346888999988877655
Q ss_pred Cc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.. |+||| ++|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~ 213 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV-GKPE 213 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE-ECHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHH
Confidence 44 88999 145555555689999999999999999999999999999865 4443
No 88
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.88 E-value=5.6e-22 Score=195.82 Aligned_cols=180 Identities=19% Similarity=0.208 Sum_probs=110.2
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~- 133 (568)
+|+++|++++|++ .++|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.+.++........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHH
Confidence 4789999999963 469999999999999999999999999999999999643 334444444433322111110
Q ss_pred -------HHHHhccHH--HHHHHHHHHHHhh-cc---CCCh---HHHHHHHHHHHh--------ccCCCChHHHHHHHHH
Q psy16366 134 -------NIVLSADKN--RVKLLKECSKLER-DE---SGDN---QLRLTEVYDELK--------SIEADAAEPRARRILA 189 (568)
Q Consensus 134 -------~~v~~~~~~--~~~l~~~~~~l~~-~~---~~~~---~~~l~~v~~el~--------~~~~~~~~~~~~~~L~ 189 (568)
..+++...- .....+.. .+.. .. .... ..+..++.+.+. .....++++++|..++
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENV-ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHH-HHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHH-HHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 001110000 00000000 0000 00 0011 123333333322 1234578888888876
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
..-+.. |+|||. +|.++.++.+.|||+||||++.+ .+||+|++|++|+++..
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 654433 889992 34444444589999999999965 78999999999999764
No 89
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=2.5e-22 Score=210.72 Aligned_cols=175 Identities=21% Similarity=0.194 Sum_probs=117.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-------------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL------------------- 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~------------------- 119 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhH
Confidence 5899999999998899999999999999999999999999999999999743 2333333
Q ss_pred ----EEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHH
Q psy16366 120 ----YCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRI 187 (568)
Q Consensus 120 ----~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~ 187 (568)
|+.|+...... +..+.+.- .+ ............++.++.+.+. .....++++++|.+
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~------~~-----~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva 149 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAF------PL-----KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHH------HH-----HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHH------HH-----HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHH
Confidence 33333222111 11111110 00 0000000011234444554432 12346888888888
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|+..-... |+|||. .|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 225 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPD 225 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe-CCHH
Confidence 76643332 889991 45555555689999999999999999999999999999865 4443
No 90
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=5.2e-23 Score=205.98 Aligned_cols=186 Identities=12% Similarity=0.132 Sum_probs=117.9
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-H----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-A---- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~---- 132 (568)
.+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|... |..+.+.+.++++...... .
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHT
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCC
Confidence 36999999999998899999999999999999999999999999999999642 3455665555444221110 0
Q ss_pred HHHHHhccHHH--HHHHHHHHHHhhcc---------------CCC--hHHHHHHHHHHHh-------ccCCCChHHHHHH
Q psy16366 133 VNIVLSADKNR--VKLLKECSKLERDE---------------SGD--NQLRLTEVYDELK-------SIEADAAEPRARR 186 (568)
Q Consensus 133 ~~~v~~~~~~~--~~l~~~~~~l~~~~---------------~~~--~~~~l~~v~~el~-------~~~~~~~~~~~~~ 186 (568)
+..+.+..... ....+.. .+.... ... ...+..++.+.+. .....+.++++|.
T Consensus 84 i~~v~q~~~l~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHH-HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHH-HHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 00111111000 0000000 000000 001 1233444555442 1234577888887
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.++..-+.. |+|||. +|.++.+. +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 239 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRGEE 239 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEE-EESHH
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-eCHHH
Confidence 776543322 889991 34444333 78999999999999999999999999999864 44443
No 91
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=1.9e-22 Score=211.39 Aligned_cols=185 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v 136 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+.++++..... ..+..+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEE
Confidence 5999999999998899999999999999999999999999999999999643 344555444443321110 001111
Q ss_pred HhccHHHHHHHHHHHHHhh-cc--CCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 137 LSADKNRVKLLKECSKLER-DE--SGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~~--~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
++.. ....-+...+.+.. +. ... ...++.++.+.+. .....++++++|.+|+..-... |+||
T Consensus 89 ~Q~~-~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 89 FQSY-AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred ecCc-ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1110 00000000001100 00 001 1234444555432 1234577788888776654433 8899
Q ss_pred ch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 200 SS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 200 Pn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|. .|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 227 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI-GSPT 227 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 91 45555555689999999999999999999999999999865 4443
No 92
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=1.8e-22 Score=210.43 Aligned_cols=175 Identities=27% Similarity=0.270 Sum_probs=117.0
Q ss_pred ceEEeeeEEEeCCce--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------
Q psy16366 59 DIKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL----------------- 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~----------------- 119 (568)
+|+++|++++|+++. +|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChh
Confidence 589999999998888 9999999999999999999999999999999999643 2333333
Q ss_pred -----EEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHH
Q psy16366 120 -----YCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARR 186 (568)
Q Consensus 120 -----~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~ 186 (568)
++.|+...... +..+.+.-.. ............+..++.+.+. .....++++++|.
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~-----------~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPL-----------TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGG-----------TTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 33333222111 1111111000 0000000001233444444432 1234688899988
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
+|+..-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~ 226 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKPE 226 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 887654433 889991 45555555689999999999999999999999999999865 4443
No 93
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=1.1e-21 Score=195.25 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=112.4
Q ss_pred ccceEEeeeEEEe--CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHH
Q psy16366 57 SVDIKVENFSLSA--KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 134 (568)
Q Consensus 57 ~~~I~i~nls~~~--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~ 134 (568)
.-||+++|++++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+.++.......+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHH
Confidence 3589999999999 35789999999999999999999999999999999999642 3344444433333211110000
Q ss_pred ----HHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH------Hh------------ccCCCChHHHHHHHHHhcC
Q psy16366 135 ----IVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE------LK------------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 135 ----~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~e------l~------------~~~~~~~~~~~~~~L~~lg 192 (568)
.+.+.. ..... ...+.+..........++.++.+. +. .....+.++++|..++..-
T Consensus 83 ~~i~~v~Q~~-~l~~~-tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 83 RQVGVVLQDN-VLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp HHEEEECSSC-CCTTS-BHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred hcEEEEeCCC-ccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 000000 00000 000000000000001112222211 11 1245788899888877654
Q ss_pred CCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 193 FTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 193 ~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
+.. |+|||. .+.+++++ .+.|||+||||.+++.. ||+|++|++|+++.. |+.+.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~-g~~~~ 229 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQ-GKHKE 229 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEE-ECHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-CCHHH
Confidence 433 889991 33333333 27899999999998865 999999999999864 55544
No 94
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.87 E-value=1.2e-21 Score=196.92 Aligned_cols=173 Identities=23% Similarity=0.177 Sum_probs=112.9
Q ss_pred ceEEeeeEEEeC--C---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-------------
Q psy16366 59 DIKVENFSLSAK--G---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY------------- 120 (568)
Q Consensus 59 ~I~i~nls~~~~--~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~------------- 120 (568)
+|+++|++++|+ + +++|+|+||+|.+|++++|+||||||||||+|+|+|... |..+.+.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhh
Confidence 589999999997 4 579999999999999999999999999999999999643 33344443
Q ss_pred ---Eeccc--cCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc---------cCCCChHHHHHH
Q psy16366 121 ---CEQEV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS---------IEADAAEPRARR 186 (568)
Q Consensus 121 ---~~qe~--~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~---------~~~~~~~~~~~~ 186 (568)
+.|+. .....+..+.+... .... ........++.++.+.+.. ....++++++|.
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~-----------~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv 147 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFA-----------VKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV 147 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHT-----------TTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHH-----------HHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH
Confidence 33321 11111111111000 0000 0111112334444444321 234678888888
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.++..-+.. |+|||. .|.++.+. +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~ 223 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFD-GTRM 223 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEE-EEHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 776554433 889992 34343334 78999999999999999999999999999754 4443
No 95
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=1.7e-21 Score=196.29 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=114.2
Q ss_pred cceEEeeeEEEeCC---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE--------------
Q psy16366 58 VDIKVENFSLSAKG---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY-------------- 120 (568)
Q Consensus 58 ~~I~i~nls~~~~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~-------------- 120 (568)
.+|+++|++++|++ +++|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHh
Confidence 36999999999976 789999999999999999999999999999999999643 33344443
Q ss_pred -----EeccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCC-h-------HHHHHHHHHHH---------hccCCC
Q psy16366 121 -----CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGD-N-------QLRLTEVYDEL---------KSIEAD 178 (568)
Q Consensus 121 -----~~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~-~-------~~~l~~v~~el---------~~~~~~ 178 (568)
+.|+......+..+.+.-.. ..... . ...+.++.+.+ +.....
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 93 TQVAAVGQEPLLFGRSFRENIAYGL---------------TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHTTC---------------SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred ccEEEEecCCccccccHHHHHhhhc---------------ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 33433222222222211100 00000 0 00112222222 123456
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc----CCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW----KKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~----~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++++|..|+..-+.. |+|||. .+.++++++ +.|||+||||.+++.. ||+|++|++|+++.
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE 236 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE
Confidence 88888888876654433 889992 455555443 6799999999999875 99999999999975
Q ss_pred EcCChhHH
Q psy16366 242 YKGNFTLF 249 (568)
Q Consensus 242 ~~g~y~~~ 249 (568)
. |+.+.+
T Consensus 237 ~-g~~~~l 243 (271)
T 2ixe_A 237 Q-GTHLQL 243 (271)
T ss_dssp E-ECHHHH
T ss_pred E-CCHHHH
Confidence 4 555543
No 96
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.87 E-value=4.9e-22 Score=201.00 Aligned_cols=188 Identities=17% Similarity=0.158 Sum_probs=116.0
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc--CCchhHH--
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE--ASDDSAV-- 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~--~~~~~~~-- 133 (568)
.+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.+.++. .......
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcC
Confidence 36999999999998899999999999999999999999999999999999642 34455555444432 1111000
Q ss_pred --HHHHhccHHHHHH-HHHHHHHhh-c-------cCCC--hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 134 --NIVLSADKNRVKL-LKECSKLER-D-------ESGD--NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 134 --~~v~~~~~~~~~l-~~~~~~l~~-~-------~~~~--~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
..+.+........ +...+.+.. . .... ...++.++.+.+. .....+.++++|..++..-+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 0000000000000 000000000 0 0001 1223344444432 12346788888877765433
Q ss_pred Cc----cCCCch---------HHHHHHhcc---CCeE--EEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 194 TT----IYIPSS---------RVHEIMRTW---KKTL--LVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~~~---~~tv--lvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.. |+|||. ++.++++++ +.|| |+||||++++..+||+|++|++|+++. .|+.+.
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 249 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVED 249 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 32 889992 333443322 7899 999999999999999999999999985 455443
No 97
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.86 E-value=3.3e-21 Score=189.57 Aligned_cols=179 Identities=18% Similarity=0.264 Sum_probs=116.0
Q ss_pred ceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC----ceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS----IDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~----~~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|...|..+. ..+.|+.|+......+.
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv 85 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI 85 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCH
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCH
Confidence 689999999995 478999999999999999999999999999999999974332222 13567888765444444
Q ss_pred HHHHHhcc-HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh---------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 133 VNIVLSAD-KNRVKLLKECSKLERDESGDNQLRLTEVYDELK---------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 133 ~~~v~~~~-~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~---------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+.-.. ...... .+ .+... .+.+..+.+. .....+.++++|..++..-+.. |+|
T Consensus 86 ~enl~~~~~~~~~~~-~~--~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 86 KENIIFGVSYDEYRY-RS--VIKAC-------QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHHTTSCCCHHHH-HH--HHHHT-------TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHHhhccCCcChHHH-HH--HHHHh-------CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44332210 000000 00 00000 0001111110 1235688888887776543332 889
Q ss_pred Cch---------HHHHH-Hhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 199 PSS---------RVHEI-MRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 199 ePn---------~L~~~-l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
||. .+.++ +..+ +.|||+||||.+++. .||+|++|++|+++.. |+++.+
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~~ 216 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY-GTFSEL 216 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEE-ECHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 992 45454 3332 679999999999986 5999999999999764 555543
No 98
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.3e-21 Score=196.11 Aligned_cols=168 Identities=23% Similarity=0.240 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe------------
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE------------ 122 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~------------ 122 (568)
+|+++|++++|++ +++|+++||+|. |++++|+||||||||||||+|+|.. |..+.+.+.+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGGGCSCCTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECcchHHhhhe
Confidence 4789999999987 789999999999 9999999999999999999999974 4445554433
Q ss_pred -----ccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc--------cCCCChHHHHHHHHH
Q psy16366 123 -----QEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS--------IEADAAEPRARRILA 189 (568)
Q Consensus 123 -----qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~~L~ 189 (568)
|+... ..+..+.+. +. ..+ . .....++.++.+.+.. ....+.++++|..++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~--------~~---~~~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVY--------LY---EEL---K-GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHH--------HH---HHH---T-CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHH--------Hh---hhh---c-chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 33222 111111110 00 000 0 1112333444444321 234577888887776
Q ss_pred hcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhc-eeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICT-DIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d-~ii~L~~g~l~~~~g~y~ 247 (568)
..-... |+||| .++.++++++..|||+||||++++..+|| +|++|++|++... |+.+
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~-g~~~ 211 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGP-ISVS 211 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEE-EEHH
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEe-cCHH
Confidence 543322 88999 26777887775599999999999999999 9999999999754 4443
No 99
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=2.2e-21 Score=192.47 Aligned_cols=171 Identities=13% Similarity=0.152 Sum_probs=110.8
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe---------------
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE--------------- 122 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~--------------- 122 (568)
+|+++|++++| +++++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhE
Confidence 47899999999 56789999999999999999999999999999999999643 3334444433
Q ss_pred ----ccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh------------------ccCCCCh
Q psy16366 123 ----QEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK------------------SIEADAA 180 (568)
Q Consensus 123 ----qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~------------------~~~~~~~ 180 (568)
|+......+..+.+.-. ........++.++.+.+. .....+.
T Consensus 79 ~~v~q~~~l~~~tv~enl~~~----------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 79 GFVSQDSAIMAGTIRENLTYG----------------LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp CEECCSSCCCCEEHHHHTTSC----------------TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred EEEcCCCccccccHHHHHhhh----------------ccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 32221111111111100 000011122223332221 1235688
Q ss_pred HHHHHHHHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 181 EPRARRILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 181 ~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
++++|..++..-+.. |+|||. .+.+++++ .+.|||+||||.+++. .||+|++|++|+++. .|+
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~ 220 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGK 220 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eCC
Confidence 888887776543322 889991 33333332 2789999999999886 599999999999975 466
Q ss_pred hhHH
Q psy16366 246 FTLF 249 (568)
Q Consensus 246 y~~~ 249 (568)
.+.+
T Consensus 221 ~~~~ 224 (243)
T 1mv5_A 221 HNEL 224 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 100
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.86 E-value=2e-21 Score=195.41 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=117.2
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-H-
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV-N- 134 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~-~- 134 (568)
..+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|.....|..+.+.+.++++........ .
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 44799999999998889999999999999999999999999999999999962112334455444433321111000 0
Q ss_pred ---HHHhccH-----HHHHHHHH-HHHH---hhccCCC---hHHHHHHHHHHHhc--------cC-CCChHHHHHHHHHh
Q psy16366 135 ---IVLSADK-----NRVKLLKE-CSKL---ERDESGD---NQLRLTEVYDELKS--------IE-ADAAEPRARRILAG 190 (568)
Q Consensus 135 ---~v~~~~~-----~~~~l~~~-~~~l---~~~~~~~---~~~~l~~v~~el~~--------~~-~~~~~~~~~~~L~~ 190 (568)
.+.+... .....+.. ...+ ....... ...++.++.+.+.. +. ..+.++++|..++.
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 0011000 00000000 0000 0000001 12234445544321 12 26778888877765
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhh-hceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v-~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-+.. |+|||. ++.++++++ +.|||+||||.+++..+ ||+|++|++|+++.. |+.+.
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 251 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS-GDFTL 251 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE-ECTTH
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE-cCHHH
Confidence 43322 889992 566666554 67999999999999886 999999999999864 45443
No 101
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=2.8e-26 Score=234.02 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=122.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|.+. +|.
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~--lf~ 166 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSH--FWL 166 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSG--GGG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCccc--ccc
Confidence 477899999994 67999999999999999999999999999999999998 8988 356677652 443
Q ss_pred CCCHHH-HHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q psy16366 415 DDTPCE-YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493 (568)
Q Consensus 415 ~~~~~e-~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~ 493 (568)
. ++.+ ++....... ..+.+.+..+ |+...+ ...|||||||| ||||+.+|+||| |++||+.+...+.
T Consensus 167 ~-ti~~~ni~~~~~~~-~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 167 A-SLADTRAALVDDAT-HACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp G-GGTTCSCEEEEEEC-HHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred c-cHHHHhhccCcccc-HHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 2 3332 221111112 2345556654 443332 57899999999 999999999999 9999999877775
Q ss_pred HHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 494 EAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 494 ~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
. +||++..+ ..||++ +|++|+++ ..|+.+++
T Consensus 234 ~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 234 Y-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp G-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred H-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 2 29998876 579999 99999986 56888777
No 102
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=3.2e-21 Score=197.16 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=114.3
Q ss_pred cceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 58 VDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 58 ~~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
..|+++|++|+|+ ++++|+|+||+|.+|+++|||||||||||||+++|+|...| ..+.
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEETTSBCHHHHHHT
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEEcccCCHHHHhcc
Confidence 4699999999995 57899999999999999999999999999999999996432 2233
Q ss_pred EEEEeccccCCchhHHHHHHhccH--HHHHHHHHHHHHhhccCCChHHHHHHHHHHH---------hccCCCChHHHHHH
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSADK--NRVKLLKECSKLERDESGDNQLRLTEVYDEL---------KSIEADAAEPRARR 186 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el---------~~~~~~~~~~~~~~ 186 (568)
+.|+.|+......+..+.+.-... ....+... +. ...+.+..+.+ +.....++++++|.
T Consensus 130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~---~~-------~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAA---AQ-------AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHH---HH-------HHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred eEEEecCCccCcccHHHHHHhhcccCCHHHHHHH---HH-------HhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 455666554433333333321100 00000000 00 00001111111 01124688888888
Q ss_pred HHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 187 ILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.|+..-+.. |+|||. .+.+.+.+ .+.|+|+||||++.+.. ||+|++|++|+|+.. |+++..
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~-G~~~el 275 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER-GRHEAL 275 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE-CCHHHH
Confidence 776653332 889992 23333332 26899999999999987 999999999999864 666544
No 103
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=1.3e-23 Score=214.90 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=126.3
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~ 415 (568)
.++||++.+|++++|+||||||||||+++|+|+++|+.|+|.... +..++|++|++. .+++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 467888999999999999999999999999999999999987532 124899999763 25566
Q ss_pred CCHHHHHHHh--cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHH
Q psy16366 416 DTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDA 491 (568)
Q Consensus 416 ~~~~e~l~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~ 491 (568)
.++.+++... .+.. ..+++.+|+.+.... ++.+|| |||++|||+++.+|+ +|+|| ||+|||+...
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-- 238 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-- 238 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCSSCCHH-HHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCCcchhH-HHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--
Confidence 6677765421 1111 124566777654443 678899 999999999999999 99999 9999998754
Q ss_pred HHHHHHhcCceEEEEec---------chHHHHhhCceEEEEECCeE
Q psy16366 492 LAEAIKNYQGGVILVSH---------DERLIRETDCELWALEKKNI 528 (568)
Q Consensus 492 l~~~l~~~~~tvi~vsH---------d~~~i~~~~~~i~~l~~g~i 528 (568)
+..+-...+.|+|++|| .+..+..++..|.++..|+.
T Consensus 239 ~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 23333356889999999 66778888889999999964
No 104
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=1.7e-21 Score=192.78 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=111.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc--hhHHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--DSAVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~--~~~~~~v 136 (568)
+|+++|++++|++ .|+|+||+|.+ +++||+||||||||||+|+|+|... |..+.+.+.++++.... ...+..+
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEE
Confidence 3789999999975 49999999999 9999999999999999999999642 34455555443331100 0001111
Q ss_pred HhccHHHHHHHHHHHHHhh-ccC-C--ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch
Q psy16366 137 LSADKNRVKLLKECSKLER-DES-G--DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS 201 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~~~-~--~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn 201 (568)
.+... ....+...+.+.. ... + ....+..++.+.+. .....++++++|..++..-+.. |+|||.
T Consensus 76 ~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 76 PQDYA-LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CSSCC-CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred cCCCc-cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11000 0000000000000 000 0 00122333333321 1234678888888776654433 889992
Q ss_pred -------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 202 -------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 202 -------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.|.++.++.+.|||+||||.+++..+||+|++|++|+++.. |+.+.+
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 214 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK-GKLKEL 214 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 33343334478999999999999999999999999999864 555443
No 105
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=191.28 Aligned_cols=174 Identities=18% Similarity=0.226 Sum_probs=115.4
Q ss_pred ceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc----eEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI----DLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~----~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|...|..+.+ .+.|+.|+......+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv 82 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSL 82 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEH
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCH
Confidence 589999999997 4789999999999999999999999999999999999754322221 3567788764433333
Q ss_pred HHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHH---HHHHH------------hccCCCChHHHHHHHHHhcCCCc--
Q psy16366 133 VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTE---VYDEL------------KSIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~---v~~el------------~~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
.+.+.-... . ......+..+ +.+.+ ......++++++|..++..-+..
T Consensus 83 ~enl~~~~~--------------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 83 RENILFGCQ--------------L-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp HHHHHTTSC--------------C-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhhCccc--------------c-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 333321100 0 0000000000 01111 11235688888887776543322
Q ss_pred --cCCCch---------HHHHHHh---c--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 --IYIPSS---------RVHEIMR---T--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~---~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+|||. .+.+++. . .+.|||+||||.+++. .||+|++|++|+++. .|+.+.+
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 215 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQEL 215 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHH
Confidence 889992 4445552 2 2689999999999885 699999999999975 4665543
No 106
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.85 E-value=3.8e-21 Score=191.62 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=112.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-H---
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV-N--- 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~-~--- 134 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|.....|..+.+.+.++++........ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 589999999999889999999999999999999999999999999999962112445566555444322111110 0
Q ss_pred -HHHhccH-----HHHHHHHHHH-HHhhccCC--ChHHHHHHHHHHHhc--------cCC-CChHHHHHHHHHhcCCCc-
Q psy16366 135 -IVLSADK-----NRVKLLKECS-KLERDESG--DNQLRLTEVYDELKS--------IEA-DAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 135 -~v~~~~~-----~~~~l~~~~~-~l~~~~~~--~~~~~l~~v~~el~~--------~~~-~~~~~~~~~~L~~lg~~~- 195 (568)
.+.+... .....+.... ........ +...++.++.+.+.. +.. .+.++++|..++..-+..
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 0111100 0000000000 00000000 012233444443321 233 677888887766543222
Q ss_pred ---cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhh-hceeeEEcCCeeeEEcCChh
Q psy16366 196 ---IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v-~d~ii~L~~g~l~~~~g~y~ 247 (568)
|+|||. .+.+++++ .+.|||+||||.+++..+ ||+|++|++|+++.. |+.+
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 229 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT-GGPE 229 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE-ESHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE-eCHH
Confidence 889992 44444443 368999999999999988 599999999999864 5544
No 107
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=1.1e-20 Score=196.76 Aligned_cols=78 Identities=36% Similarity=0.520 Sum_probs=67.9
Q ss_pred CCCCCCCHhHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkq------Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~ 519 (568)
+++..||||||| |+++|++++.+|++|||||||+|||+.++..+.+.|.++ +.+||+||||.++ ..+|++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d~ 322 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAADH 322 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCSE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCCE
Confidence 467899999999 678888999999999999999999999999999999875 3589999999765 578999
Q ss_pred EEEEE--CCe
Q psy16366 520 LWALE--KKN 527 (568)
Q Consensus 520 i~~l~--~g~ 527 (568)
+++|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 98885 454
No 108
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.84 E-value=1.2e-24 Score=210.42 Aligned_cols=160 Identities=13% Similarity=0.014 Sum_probs=100.2
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE-------CCCeeEEEEecCCCCCCCCCCCHHHH
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-------SPRLRIGKFDQHSGEHLFPDDTPCEY 421 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-------~~~~~i~~~~q~~~~~l~~~~~~~e~ 421 (568)
.++++| .+|.+|++++|+||||||||||+|+|+|+++...+.+.. ..+..++|++|++. +|+.+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCC
Confidence 456777 699999999999999999999999999998633322111 01235788888753 2333222221
Q ss_pred HH---------HhcCCCHHHHHHH----------HHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 422 LM---------KLFNLPYEKSRRQ----------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 422 l~---------~~~~~~~~~~~~~----------L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+. ..++.+...+++. ++.+|+..... .++..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-TMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-HCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-hcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 10 1112233333322 23333332222 2455666 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 483 NL----DIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 483 ~L----D~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
++ |+..+..+.+++.++ +.|||+||||++.+..+|+++++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888887777554 5699999999999999999998874
No 109
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=2.7e-24 Score=221.00 Aligned_cols=173 Identities=16% Similarity=0.083 Sum_probs=128.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEE-----------------------EeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFG-----------------------LDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~-----------------------i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|+.|
T Consensus 43 ~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 43 QIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred eEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 578999999992 677777764 899999999999999999999999999999877
Q ss_pred EEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh--cCC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 392 ~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
. .++++++|++. +++. ++.+++... .+. ..+.+.+.|..++ .+... .++..|||||+||+++|
T Consensus 120 ~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~a 188 (312)
T 3aez_A 120 H------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPGA 188 (312)
T ss_dssp C------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEEE
T ss_pred C------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhhH
Confidence 4 46899999864 4555 776664321 122 2355677888887 44432 35679999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHH-hhCceEEEEECC
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR-ETDCELWALEKK 526 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~-~~~~~i~~l~~g 526 (568)
++++.+|+|||||||+..+|... ..+.++-..+|+|+||.+... ....|...+.++
T Consensus 189 ~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 189 EQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998521 123333345788889887643 233444334443
No 110
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.83 E-value=3.3e-20 Score=184.53 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=108.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHH----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN---- 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~---- 134 (568)
+|+++|++++ ++|+|+||+|.+|++++|+||||||||||||+|+|... |. +.+.+.++++.........
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEE
Confidence 6899999987 68999999999999999999999999999999999743 33 5554444333211110000
Q ss_pred HHHhccHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcC---CC--------c
Q psy16366 135 IVLSADKNRVKLLKECSKLER-DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLG---FT--------T 195 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg---~~--------~ 195 (568)
.+.+... ...-+...+.+.. ........++.++.+.+. .....++++++|..++..- -. -
T Consensus 77 ~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 77 YLSQQQT-PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp EECSCCC-CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EECCCCc-cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 0000000 0000000000000 000001233444444432 1234677887776654331 11 1
Q ss_pred cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .+.++++++ +.|||+||||++++..+||++++|++|+++.. |+.+.
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 219 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS-GRREE 219 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-EEHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 789992 333433322 78999999999999999999999999999754 54443
No 111
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.83 E-value=2.2e-20 Score=187.13 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=109.6
Q ss_pred ceEEeeeEEEeCC---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEE--------------
Q psy16366 59 DIKVENFSLSAKG---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC-------------- 121 (568)
Q Consensus 59 ~I~i~nls~~~~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~-------------- 121 (568)
+|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|... | .+.+.+.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhc
Confidence 6999999999976 469999999999999999999999999999999999642 2 4444443
Q ss_pred -----eccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHH------HH------------hccCCC
Q psy16366 122 -----EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD------EL------------KSIEAD 178 (568)
Q Consensus 122 -----~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~------el------------~~~~~~ 178 (568)
.|+......+..+.+.-. ..... ..++.++.+ .+ +.....
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~----------------~~~~~-~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYG----------------KLDAT-DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTT----------------CTTCC-HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred cEEEEcCCCcccccCHHHHHhcc----------------CCCCC-HHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 333222111221111100 00000 111111111 11 012356
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
++++++|..++..-+.. |+|||. .+.++++++ +.|||+||||.+++. .||+|++|++|+++. .
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~ 234 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-K 234 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-E
Confidence 88888887776543322 889992 333444332 689999999999986 599999999999985 4
Q ss_pred CChhHH
Q psy16366 244 GNFTLF 249 (568)
Q Consensus 244 g~y~~~ 249 (568)
|+.+..
T Consensus 235 g~~~~l 240 (260)
T 2ghi_A 235 GTHKDL 240 (260)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 665544
No 112
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=6.9e-23 Score=212.31 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=107.2
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
++++++||.|.+|++++|+||||||||||+++|+|+++|++|.|.+.....+ .+.... .
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---------~~~~~~-------~----- 217 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---------VFKHHK-------N----- 217 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---------CCSSCS-------S-----
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---------ccccch-------h-----
Confidence 3789999999999999999999999999999999999999999876532110 000000 0
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecc
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 509 (568)
.+++ +.. |||+||++||+||..+|++|||||||+. +..+ +++.+..-+.|+|++||+
T Consensus 218 ---------~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 218 ---------YTQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ---------EEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEEC
T ss_pred ---------EEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEcc
Confidence 0000 001 8999999999999999999999999982 3322 333443323479999999
Q ss_pred hHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHH
Q psy16366 510 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 546 (568)
Q Consensus 510 ~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~ 546 (568)
.+ +...|+++++|.+|......-+.+..++.+...+
T Consensus 275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~~i 310 (330)
T 2pt7_A 275 GS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKDLI 310 (330)
T ss_dssp SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHTTC
T ss_pred cH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHHhC
Confidence 99 6678899999988753211234444444443333
No 113
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=1.7e-22 Score=210.74 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=125.9
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~ 415 (568)
.++||++.+|++++|+||||||||||+++|+|+++|+.|+|.... +..|+|++|++. .+++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChh
Confidence 357788899999999999999999999999999999999987532 124899999752 14555
Q ss_pred CCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHH
Q psy16366 416 DTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDA 491 (568)
Q Consensus 416 ~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~ 491 (568)
.++.+++.... +.. ..+++.+|+.+.... ++.+|| +||++|||+++.+|+ +|+|| ||+|||+.+..
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCSSCCHH-HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCChhhhh-HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence 66666654211 111 124566777654443 678899 999999999999999 99999 99999987652
Q ss_pred HHHHHHhcCceEEEEec---------chHHHHhhCceEEEEECCeE
Q psy16366 492 LAEAIKNYQGGVILVSH---------DERLIRETDCELWALEKKNI 528 (568)
Q Consensus 492 l~~~l~~~~~tvi~vsH---------d~~~i~~~~~~i~~l~~g~i 528 (568)
..+-...+.|+|++|| .+..+..++..|.++..|+.
T Consensus 297 -~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2333356889999999 56777788889999999864
No 114
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.83 E-value=2e-20 Score=181.88 Aligned_cols=166 Identities=16% Similarity=0.247 Sum_probs=107.4
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce--------------EEEEe
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID--------------LLYCE 122 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~--------------i~~~~ 122 (568)
...|+++|++++|++ ++|+|+||+|.+|++++|+|||||||||||++|+|... |..+. +.|+.
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGGGGGEEEEC
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhhhhcCcEEEEe
Confidence 457999999999988 99999999999999999999999999999999999643 22333 34455
Q ss_pred ccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc------cCCCChHHHHHHHHHhcCCCc
Q psy16366 123 QEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS------IEADAAEPRARRILAGLGFTT 195 (568)
Q Consensus 123 qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~------~~~~~~~~~~~~~L~~lg~~~ 195 (568)
|+...... +..+.+. +. ...... ..+ ..++.++.+.+.. ....+.++++|..++..-+..
T Consensus 85 q~~~~~~~~tv~enl~--------~~---~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLK--------AV---ASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp SSCCCCTTSBHHHHHH--------HH---HHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred CCCcCCCCCCHHHHHH--------HH---HHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC
Confidence 54332221 2221111 00 000001 111 2344445554421 223578888888877654443
Q ss_pred ----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 196 ----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 196 ----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
++|||. .+.+++++ .+.|||+||||.+++..+||+|+.+ .|+|
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 889991 33333332 2689999999999999999998854 4444
No 115
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=9.5e-22 Score=229.77 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=116.5
Q ss_pred CCCeEEEEe-----eEEEeCCCceeeeeeeEEEeC-------CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe
Q psy16366 332 PPPVLGLHD-----VTFGYPGGKVLLEKVNFGLDM-------ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399 (568)
Q Consensus 332 ~~~~l~~~~-----v~~~y~~~~~il~~vs~~i~~-------Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~ 399 (568)
..++|.+++ |++.|+++..+++|++|++.+ |++++|+||||||||||||+| |++.+. .
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------a 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------A 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------H
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------h
Confidence 346899999 999995567899999999987 999999999999999999999 998752 2
Q ss_pred eEE-EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 400 RIG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 400 ~i~-~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
++| |+||++. ..++.+.+ +.++|+...... ..+++|+++++ +++|++++.+|.++|||
T Consensus 817 qiG~~Vpq~~~-----~l~v~d~I--------------~~rig~~d~~~~-~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 817 QMGCYVPAEVC-----RLTPIDRV--------------FTRLGASDRIMS-GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTTCCEESSEE-----EECCCSBE--------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred heeEEeccCcC-----CCCHHHHH--------------HHHcCCHHHHhh-chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 345 8888752 12222211 123344333222 34678887775 99999999999999999
Q ss_pred CCCCCCCHHHH-H---HHHHHHHhc-CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 479 EPTNNLDIESI-D---ALAEAIKNY-QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 479 EPt~~LD~~~~-~---~l~~~l~~~-~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|||+|+|+... . ++++.|.+. +.++|++|||.+++..++++++++ +|++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999998763 3 334444443 779999999999999999988775 46654
No 116
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.82 E-value=7.4e-21 Score=200.48 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=113.6
Q ss_pred CCccceEEeeeEEEe--CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH
Q psy16366 55 DNSVDIKVENFSLSA--KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 55 ~~~~~I~i~nls~~~--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~ 132 (568)
.....|+++|++++| ++..+|+|+||+|.+||+++|+||||||||||||+|+|.. +..+.|.+.++++.......
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS---EEEEEEEESSCBTTSSCHHH
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC---CCCeEEEECCEECCcCChHH
Confidence 344579999999999 6678999999999999999999999999999999999963 23344444444332211110
Q ss_pred H----HHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH------hc-cCC-----------CChHHHHHHHHHh
Q psy16366 133 V----NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL------KS-IEA-----------DAAEPRARRILAG 190 (568)
Q Consensus 133 ~----~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el------~~-~~~-----------~~~~~~~~~~L~~ 190 (568)
. ..+++... .+.. ...+.+. ........++.++.+.+ .. ... .++++++|.+|+.
T Consensus 92 ~rr~ig~v~Q~~~-lf~~-tv~enl~-~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 92 WRKAFGVIPQKVF-IFSG-TFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHHTEEEESCCCC-CCSE-EHHHHHC-TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcc-cCcc-CHHHHhh-hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 0 00111000 0000 0000000 00001112223333321 11 111 6888998888766
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.-... |+|||. .+.+.+++. +.|+|+||||.+.+. .||||++|++|+|..++.+.+.|
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEESSHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 43332 889992 344455443 689999999998765 59999999999998764433333
No 117
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=7.5e-24 Score=206.87 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=90.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEEecCCCCCCCCCCCH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTP 418 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~l~~~~~~ 418 (568)
.-|+||||+|.+|++++|+||||||||||+++|+|++ | |.|.... +..++|++|++. +|..++.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT--IFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHH--HHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHH--HHHHhhh
Confidence 4699999999999999999999999999999999998 6 8887521 234677777642 2211110
Q ss_pred H-HHH------HHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH-----HHHHccCCCeEEEeCCCCCCCH
Q psy16366 419 C-EYL------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL-----AELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 419 ~-e~l------~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l-----A~al~~~p~lLlLDEPt~~LD~ 486 (568)
. +++ ...++.+...+.+++....+. .. ..+|||||+||++| +++++.+|++++|||||+++|.
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 0 000 001223345566667654321 11 14799999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy16366 487 ESIDALAEAIKN 498 (568)
Q Consensus 487 ~~~~~l~~~l~~ 498 (568)
.+...+.+.|..
T Consensus 161 ~~~~~i~~~l~~ 172 (218)
T 1z6g_A 161 ENQEQIQKRMEQ 172 (218)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 887777777654
No 118
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=1.7e-22 Score=216.74 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=131.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 398 (568)
+++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.....
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 35688999999994356799999 999999999999999999999999999999999998875432
Q ss_pred -----eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCC--CCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 -----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG--LPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 -----~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~--l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
..++|++|... .+++..++.+++... .+.....+ .....+ .+..||+|| |||+|| +.+
T Consensus 208 ~~~l~r~i~~v~q~~~-~~~~~~~v~~~~~~~--------ae~~~~~~~~v~~~ld--~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 208 PDGRARSVVIAAPADV-SPLLRMQGAAYATRI--------AEDFRDRGQHVLLIMD--SLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHHHHTEEEEEECTTS-CHHHHHHHHHHHHHH--------HHHHHTTTCEEEEEEE--CHHHHHHHH-HHHHHH---TTC
T ss_pred ccccCceEEEEECCCC-CHHHHHHHHHHHHHH--------HHHHHhCCCCHHHHHH--hHHHHHHHH-HHHHHH---hCC
Confidence 35899998632 233344444443221 01111111 001111 356899999 999999 888
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQ------G------GVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|++ |+|||+.+...+.+++.+.. + ||+++|||++ ..+|+++++|.+|+++.
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 988 99999999999999997652 3 8999999998 56788888888888753
No 119
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.80 E-value=2e-19 Score=187.75 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=73.9
Q ss_pred CCC-CCCHhHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCce
Q psy16366 450 PIR-DLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 450 ~~~-~LSgGqkqRv~lA~al~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~ 519 (568)
++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++..|+|++||+ +. .|++
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~~ 336 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAAL 336 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCSE
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCCE
Confidence 556 79999999999999999 8999999999999999999999999999987899999995 33 8999
Q ss_pred EEEEECCeEEEEcCCHHH
Q psy16366 520 LWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 520 i~~l~~g~i~~~~g~~~~ 537 (568)
+++|++|++.. .|+.++
T Consensus 337 i~~l~~G~i~~-~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQAGRFTP-VADEEM 353 (359)
T ss_dssp EEEEETTEEEE-CCCTTT
T ss_pred EEEEECCEEEe-cCCHHH
Confidence 99999999974 555543
No 120
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.79 E-value=3.9e-21 Score=183.36 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=110.0
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC---------CCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS---------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 432 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~---------~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~ 432 (568)
|++++|+||||||||||+++|+|+++ ++| |... .+.++||++|+... .. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~~---~~----------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----TR---GP----------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS----CE---EE-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc----ce---eh-----------
Confidence 78999999999999999999999998 888 6432 24568898887421 10 11
Q ss_pred HHHHHHhCCCCCc------cccCCCCCCCHhHHHHH-HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcC
Q psy16366 433 SRRQLGMFGLPSY------AHTIPIRDLSGGQKARV-ALAE---LTLNNPDILILDE--PTNNLDIESIDALAEAIKNYQ 500 (568)
Q Consensus 433 ~~~~L~~~~l~~~------~~~~~~~~LSgGqkqRv-~lA~---al~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~ 500 (568)
+..+++... ....+...+|+|||+++ +|++ |++.+|+|||||| ||+++|....+.|.+++..+.
T Consensus 61 ----l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~ 136 (189)
T 2i3b_A 61 ----LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG 136 (189)
T ss_dssp ----EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS
T ss_pred ----hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC
Confidence 111222110 11223457999999988 4444 5789999999999 999999999999999999875
Q ss_pred ceEE---EEecch--HHHHhhCceEEEEECCeEEEEc-CCHHHHHHHHHHHH
Q psy16366 501 GGVI---LVSHDE--RLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTSL 546 (568)
Q Consensus 501 ~tvi---~vsHd~--~~i~~~~~~i~~l~~g~i~~~~-g~~~~~~~~~~~~~ 546 (568)
.+|| .||||. .|+.++++ +.+|++.... .+.+...+++++.+
T Consensus 137 ~~ilgti~vsh~~~~~~vd~i~~----~~~~~i~~~~~~nr~~~~~~i~~~~ 184 (189)
T 2i3b_A 137 TIILGTIPVPKGKPLALVEEIRN----RKDVKVFNVTKENRNHLLPDIVTCV 184 (189)
T ss_dssp CCEEEECCCCCSSCCTTHHHHHT----TCCSEEEECCSSSGGGHHHHHHHHH
T ss_pred cEEEEEeecCCCCchHHHHHHee----cCCcEEEEeChHhHHHHHHHHHHHH
Confidence 5553 456987 67766654 4666766543 45666666665544
No 121
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=2e-19 Score=182.68 Aligned_cols=178 Identities=19% Similarity=0.281 Sum_probs=105.3
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC----ceEEEEeccccCCchhHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS----IDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~----~~i~~~~qe~~~~~~~~~ 133 (568)
..|+++|+++. ++.+|+++||+|.+|++++|+||||||||||||+|+|...|..+. ..+.|+.|+......+..
T Consensus 39 ~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~ 116 (290)
T 2bbs_A 39 DSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIK 116 (290)
T ss_dssp -------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHH
T ss_pred ceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHH
Confidence 36899999986 468999999999999999999999999999999999974332221 246788887654444444
Q ss_pred HHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh---------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 134 NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~---------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.+.......... .+ .+... .+.+..+.+. .....++++++|..++..-+.. |+|||
T Consensus 117 enl~~~~~~~~~~-~~--~~~~~-------~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 117 ENIIGVSYDEYRY-RS--VIKAC-------QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp HHHHTTCCCHHHH-HH--HHHHT-------TCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHhhCcccchHHH-HH--HHHHh-------ChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4433100000000 00 00000 0011111110 1245688888888776543332 88999
Q ss_pred h---------HHHHH-Hhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 201 S---------RVHEI-MRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 201 n---------~L~~~-l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. .+.++ +..+ +.|||+||||.+++. .||+|++|++|+++. .|+.+..
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l 245 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSEL 245 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHH
Confidence 2 44443 2222 689999999999986 599999999999975 4665544
No 122
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.79 E-value=1.1e-18 Score=194.38 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=112.5
Q ss_pred cceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe-------------
Q psy16366 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE------------- 122 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~------------- 122 (568)
.+|+++|++++|++ +++|+|+||+|.+||+++||||||||||||+++|+|... |..+.+.+.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhc
Confidence 46999999999974 689999999999999999999999999999999999643 3344444433
Q ss_pred ------ccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH------Hh------------ccCCC
Q psy16366 123 ------QEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE------LK------------SIEAD 178 (568)
Q Consensus 123 ------qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~e------l~------------~~~~~ 178 (568)
|+....+.+..+.+.-.. ... ....++.++.+. ++ .....
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~---------------~~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAA---------------EGE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccC---------------CCC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 332221111111111000 000 011111221111 11 11346
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
++++++|..++..-+.. ++|||. .+.+.++++ ++|+|+||||.+.+. .||+|++|++|+++. .
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~ 559 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-R 559 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-E
Confidence 88889888877654433 889992 333444332 789999999999987 699999999999986 4
Q ss_pred CChhHH
Q psy16366 244 GNFTLF 249 (568)
Q Consensus 244 g~y~~~ 249 (568)
|+++..
T Consensus 560 g~~~~l 565 (582)
T 3b5x_A 560 GRHADL 565 (582)
T ss_pred CCHHHH
Confidence 666544
No 123
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=1.9e-21 Score=202.53 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=124.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 398 (568)
+++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|.....
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 35688999999994366799999 999999999999999999999999999999999998764321
Q ss_pred ----eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 399 ----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 399 ----~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
..+.+++|.. ....+.+.... ..-.+.+.+...+-.-......+..||+|| |||++| +.+|++
T Consensus 122 ~~~~~~v~~~~~~~-------~~~~~r~~~~~--~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 122 STLSKCVLVVTTSD-------RPALERMKAAF--TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp HHHTTEEEEEECTT-------SCHHHHHHHHH--HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred hhhhceEEEEECCC-------CCHHHHHHHHH--HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence 1244444432 11111111000 000011111111110000002467899999 899999 578887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY-----QG-----GVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+|||+.....+.+++.+. +. ||+++|||++ ..+|+++++|.+|+++.
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 9999999999999999765 23 7999999999 67899999999999863
No 124
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.79 E-value=3.1e-22 Score=201.66 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=89.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEEEEecCCCCCCCCCCCHHHHHHHhcCC----CHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL----PYE 431 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~----~~~ 431 (568)
.++|+||||||||||+|+|+|+..|++|+|.... +..++|++|++. +++.+|+.+++...... ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 3899999999999999999999999999986532 357999999863 56666666643211111 112
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchH
Q psy16366 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 511 (568)
Q Consensus 432 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 511 (568)
.+...+. ..... ..+.+|||||+|||++||+++. +++|||||.+||+...+ +++.|.+. .+||+|.|..+
T Consensus 82 ~i~~~~~----~~~~~-~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN----EQYEK-FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH----HHHHH-HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHH----HHHHh-hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEeccc
Confidence 2333322 11222 3567899999999999999886 99999999999998754 45555555 78888888775
Q ss_pred HH
Q psy16366 512 LI 513 (568)
Q Consensus 512 ~i 513 (568)
.+
T Consensus 152 ~l 153 (270)
T 3sop_A 152 TM 153 (270)
T ss_dssp GS
T ss_pred cC
Confidence 43
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=1.8e-20 Score=185.92 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=105.6
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE-CCCeeEEEEecCCCCCCCCCCCHHHHHHHh
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-SPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~ 425 (568)
+++++|+|+||++.+|+++||+||||||||||+++|+|++ |.+.+ ..+..++|++|+. ++...+..++....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 5667999999999999999999999999999999999976 33321 1234689999984 55667877765322
Q ss_pred c---CC------CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 426 F---NL------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 426 ~---~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
. .. ..+.+.+.|+.+ ..... .++..||+||+||+++ ++++.+|+++|||||+...|.. +.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~-~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~~-- 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI--VEGKT-VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IRD-- 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH--HTTCC-EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HHT--
T ss_pred ccCCCCCCcccccHHHHHHHHHHH--HCCCC-eecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HHH--
Confidence 1 11 223345555543 22222 3568999999999988 5888899999999999888864 111
Q ss_pred HhcCceEEEEecc-hHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 497 KNYQGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 497 ~~~~~tvi~vsHd-~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
-.+.+|+++||+ .++...++.++ ++|. ++++..+..
T Consensus 153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~------~~e~~~~~~ 189 (245)
T 2jeo_A 153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR------DLEQILTQY 189 (245)
T ss_dssp -TCSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred -hcCeEEEEECCHHHHHHHHHHHHH---HcCC------CHHHHHHHH
Confidence 136799999997 55555555444 4453 455555443
No 126
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.78 E-value=6.4e-20 Score=208.41 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=109.6
Q ss_pred CeEEEEeeEEEe-C-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECCCeeEEEEecCCCC
Q psy16366 334 PVLGLHDVTFGY-P-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 334 ~~l~~~~v~~~y-~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~i~~~~q~~~~ 410 (568)
+.+.+++...-+ . +++.+++|+||+ |++++|+||||||||||||+|+|+.. |..|.+....+..+++++|
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---- 621 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---- 621 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE----
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH----
Confidence 346676663211 0 235789999999 99999999999999999999999874 6788754333445665544
Q ss_pred CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCC---CCCCC
Q psy16366 411 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEP---TNNLD 485 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEP---t~~LD 485 (568)
++...++.+++ ...+|+|+++++.+++++ +.+|+++||||| |++||
T Consensus 622 -i~~~~~~~d~l----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 622 -IYTRIGASDDL----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp -EEEECCC----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred -hhccCCHHHHH----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 22222222211 124799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHhcCceEEEEecchHHHH
Q psy16366 486 IESI-DALAEAIKNYQGGVILVSHDERLIR 514 (568)
Q Consensus 486 ~~~~-~~l~~~l~~~~~tvi~vsHd~~~i~ 514 (568)
..+. .++.+.|.+.+.++|++|||.+++.
T Consensus 673 ~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 673 GVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9886 5788888887889999999998874
No 127
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=2.7e-19 Score=206.75 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=107.5
Q ss_pred CeEEEEeeEEEeC----CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHH--------hcCcCCCccEEEECCCeeE
Q psy16366 334 PVLGLHDVTFGYP----GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL--------KGELTPNKGELRKSPRLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~----~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l--------~G~~~p~~G~i~~~~~~~i 401 (568)
+.+.+.+...-+- +++.+++|++|++.+|++++|+||||||||||||+| +|...|..+.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 3455555433221 245789999999999999999999999999999999 67666644321 1
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDE 479 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDE 479 (568)
+.+. +++.++|+... ....+|+|+++++.+|+++ +.+|+++||||
T Consensus 703 ~~~d-----------------------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE 749 (934)
T 3thx_A 703 SIVD-----------------------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDE 749 (934)
T ss_dssp ECCS-----------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred hHHH-----------------------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC
Confidence 2110 11222333221 2346888888888888888 99999999999
Q ss_pred CCCCCCHHHHHHH----HHHHHh-cCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 480 PTNNLDIESIDAL----AEAIKN-YQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 480 Pt~~LD~~~~~~l----~~~l~~-~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
||+|||+.....+ .+.+.+ .+.++|++|||.++. .+|+++..|.+|++.
T Consensus 750 p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 750 LGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 9999999876555 344443 478999999998876 578888777777764
No 128
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.77 E-value=1.1e-18 Score=194.16 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=114.7
Q ss_pred cceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc-------------------
Q psy16366 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI------------------- 116 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~------------------- 116 (568)
..|+++|++|+|++ +++|+|+||+|++||++|||||||||||||+++|+|...| ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHhh
Confidence 46999999999964 5799999999999999999999999999999999997433 222
Q ss_pred eEEEEeccccCCchhHHHHHHhcc--HHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-----hccCCCChHHHHHHHHH
Q psy16366 117 DLLYCEQEVEASDDSAVNIVLSAD--KNRVKLLKECSKLERDESGDNQLRLTEVYDEL-----KSIEADAAEPRARRILA 189 (568)
Q Consensus 117 ~i~~~~qe~~~~~~~~~~~v~~~~--~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-----~~~~~~~~~~~~~~~L~ 189 (568)
.+.++.|+....+.+..+.+.-.. .....+.+..... .. .+.+..+.+.+ +.....++++++|..++
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMA-NA-----HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHT-TC-----HHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHh-Cc-----HHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 255666665544444433332110 0000010000000 00 00000000000 01124688898888776
Q ss_pred hcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-+.. ++|||. .+.+.++. .++|+|+||||.+.+.. ||+|++|++|+++. .|+++..
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el 562 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHREL 562 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHH
Confidence 543322 889992 33333332 26899999999999865 99999999999986 4666544
No 129
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=5.5e-19 Score=197.19 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=114.4
Q ss_pred cceEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 58 VDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 58 ~~I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
..|+++|++|+|++ +++|+|+||+|++|+++|||||||||||||+++|+|...| ..+.
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEhhhCCHHHHHhc
Confidence 46999999999964 6799999999999999999999999999999999996432 2333
Q ss_pred EEEEeccccCCchhHHHHHHhccH--HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-----ccCCCChHHHHHHHHHh
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSADK--NRVKLLKECSKLERDESGDNQLRLTEVYDELK-----SIEADAAEPRARRILAG 190 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-----~~~~~~~~~~~~~~L~~ 190 (568)
+.++.|+....+.+..+.+.-... ....+.+. + ........+..+.+.++ .....++++++|..++.
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEA---A---KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHH---T---TTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHH---H---HHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 455566554433333333321100 00000000 0 00000000000000000 01235888888888766
Q ss_pred cCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
.-+.. ++|||. .+.+.+.+ .++|+|+||||.+.+.. ||+|++|++|+++. .|+++...
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~ 577 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELI 577 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHH
Confidence 43332 889992 23333322 27899999999999976 99999999999986 57766543
No 130
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.4e-18 Score=193.33 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=114.2
Q ss_pred cceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce------------------
Q psy16366 58 VDIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------ 117 (568)
Q Consensus 58 ~~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------ 117 (568)
..|+++|++|+|+ ++++|+|+||+|++||+++||||||||||||+++|+|... |..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHh
Confidence 4699999999994 4689999999999999999999999999999999999643 22333
Q ss_pred -EEEEeccccCCchhHHHHHHhcc--HHHHHHHHHHHHHhhccCCChHHHHHHHHHHH---------hccCCCChHHHHH
Q psy16366 118 -LLYCEQEVEASDDSAVNIVLSAD--KNRVKLLKECSKLERDESGDNQLRLTEVYDEL---------KSIEADAAEPRAR 185 (568)
Q Consensus 118 -i~~~~qe~~~~~~~~~~~v~~~~--~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el---------~~~~~~~~~~~~~ 185 (568)
+.++.|+....+.+..+.+.-.. .......+.... . .+.+..+.+ +.....++++++|
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~-~---------~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKI-A---------QIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHH-T---------TCHHHHHTSSSGGGCEECSSSCSSCHHHHHH
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHH-h---------CcHHHHHhcccchhhHhcCCCCCcCHHHHHH
Confidence 44555554443333333322110 000000000000 0 000011111 1112468889988
Q ss_pred HHHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 186 RILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 186 ~~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
..++..-+.. ++|||. .+.+.+++ .++|+|+||||++.+. .||+|++|++|+++. .|+++...
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~ 565 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELL 565 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 8877653332 889992 33333332 3689999999999986 799999999999986 46666543
No 131
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.77 E-value=2.6e-18 Score=191.73 Aligned_cols=172 Identities=23% Similarity=0.258 Sum_probs=111.6
Q ss_pred c-eEEeeeEEEeCC---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-----------------
Q psy16366 59 D-IKVENFSLSAKG---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID----------------- 117 (568)
Q Consensus 59 ~-I~i~nls~~~~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~----------------- 117 (568)
. |+++|++++|++ +++|+|+||+|++|+++|||||||||||||+++|+|... |..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 340 GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHH
Confidence 5 999999999974 469999999999999999999999999999999999643 33333
Q ss_pred --EEEEeccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------------h-----ccCC
Q psy16366 118 --LLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------------K-----SIEA 177 (568)
Q Consensus 118 --i~~~~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------------~-----~~~~ 177 (568)
+.++.|+....+.+..+.+.-... .......+++.++.+.. + ....
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGAD--------------DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSS--------------STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred hceEEEccCCcccCCCHHHHHhhcCC--------------CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 344555443332222222211000 00000111222222211 1 0134
Q ss_pred CChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 178 DAAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
.++++++|..++..-+.. ++|||. .+.+.++++ ++|+|+||||.+.+.. ||+|++|++|+++..
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEY 562 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence 688888888776543332 889992 333433332 6899999999999865 999999999999864
Q ss_pred cCChhH
Q psy16366 243 KGNFTL 248 (568)
Q Consensus 243 ~g~y~~ 248 (568)
|+++.
T Consensus 563 -g~~~~ 567 (595)
T 2yl4_A 563 -GKHEE 567 (595)
T ss_dssp -ECSCC
T ss_pred -CCHHH
Confidence 55543
No 132
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=6.9e-20 Score=186.66 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=105.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc-EEEEC-CC-------eeEEEEecCCCCCCCCCCCHHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-ELRKS-PR-------LRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~-------~~i~~~~q~~~~~l~~~~~~~e 420 (568)
++|+++++.|.+|++++|+||||||||||++.|+|.+.|..| .|.+. .. .++..+.+... ....+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~------~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR------LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC------GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC------hhhcc
Confidence 579999999999999999999999999999999999999877 44321 00 00111111100 00000
Q ss_pred HHHHhcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhH-HHHHHHHHHHccCCCeEEEeCCCC---C---CCH-HH
Q psy16366 421 YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQ-KARVALAELTLNNPDILILDEPTN---N---LDI-ES 488 (568)
Q Consensus 421 ~l~~~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGq-kqRv~lA~al~~~p~lLlLDEPt~---~---LD~-~~ 488 (568)
.+... ..... .+..++...++. ... .+..+|.+| +||+. |+++..+|++||+||||+ + +|. ..
T Consensus 97 ~l~~~-~~~~~~~~~~~~~~l~~~~l~--i~~-~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFDELFGNDTFH--LYD-SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHH-HHHHTHHHHHHHHHHSSSCEE--EEC-CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred ccccC-CCCHHHHHHHHHHHhccCCEE--EEC-CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 11000 00011 122233322331 222 236789999 56666 999999999999999999 5 455 55
Q ss_pred HHHHHHHHH----hcCceEEEEecch--H--------------------HHHhhCceEEEEECCeE
Q psy16366 489 IDALAEAIK----NYQGGVILVSHDE--R--------------------LIRETDCELWALEKKNI 528 (568)
Q Consensus 489 ~~~l~~~l~----~~~~tvi~vsHd~--~--------------------~i~~~~~~i~~l~~g~i 528 (568)
+..+.+.|+ +++.|||++||+. + .+..+||++++|.+|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 566666664 4578999999995 4 78889999999998764
No 133
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.77 E-value=1.3e-18 Score=193.75 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=113.3
Q ss_pred cceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce------------------
Q psy16366 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------ 117 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------ 117 (568)
..|+++|++++|++ +++|+|+||+|.+||++|||||||||||||+++|+|... |..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHh
Confidence 46999999999974 689999999999999999999999999999999999643 22233
Q ss_pred -EEEEeccccCCchhHHHHHHhcc---HHHHHHHHHHHHHhhccCCChHHHHHHHHHHH---------hccCCCChHHHH
Q psy16366 118 -LLYCEQEVEASDDSAVNIVLSAD---KNRVKLLKECSKLERDESGDNQLRLTEVYDEL---------KSIEADAAEPRA 184 (568)
Q Consensus 118 -i~~~~qe~~~~~~~~~~~v~~~~---~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el---------~~~~~~~~~~~~ 184 (568)
+.++.|+....+.+..+.+.-.. .....+.+ .+. .. .+.+..+.+ +.....++++++
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~---~l~---~~----~l~~~~~~~p~g~~~~~~~~~~~LSgGq~q 487 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE---AAR---MA----YAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHH---HHH---TT----TCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHH---HHH---Hc----CCHHHHHhccccccccccCCCCCCCHHHHH
Confidence 44555554433333333222110 00000000 000 00 001111111 012346888888
Q ss_pred HHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 185 RRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 185 ~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|..++..-+.. ++|||. .+.+.++++ ++|+|+||||.+.+. .||+|++|++|+++.. |+++..
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~l 565 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER-GTHSEL 565 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe-cCHHHH
Confidence 88776543332 889992 333333322 789999999999886 5999999999999864 665544
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=3.3e-20 Score=185.92 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-ccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+.++++++. ++|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|..... .++|++|+.. .+.
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~-~~v- 75 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKK-SIV- 75 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSS-SEE-
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcc-eee-
Confidence 345555532 5899999 8999999999999999999999999999998 899865422 1333333221 000
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 415 DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 415 ~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
.. ..+|+.. ..| |++||++|..+|++||||||| |+++...+.+
T Consensus 76 -----------~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~ 118 (261)
T 2eyu_A 76 -----------NQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALR 118 (261)
T ss_dssp -----------EE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH
T ss_pred -----------eH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH
Confidence 00 1233321 122 899999999999999999999 9998877666
Q ss_pred HHHhcCceEEEEecchHHHHhhCceE
Q psy16366 495 AIKNYQGGVILVSHDERLIRETDCEL 520 (568)
Q Consensus 495 ~l~~~~~tvi~vsHd~~~i~~~~~~i 520 (568)
.. ..+.+|+++||+.+. ..+|+++
T Consensus 119 ~~-~~g~~vl~t~H~~~~-~~~~dri 142 (261)
T 2eyu_A 119 AA-ETGHLVFGTLHTNTA-IDTIHRI 142 (261)
T ss_dssp HH-HTTCEEEEEECCSSH-HHHHHHH
T ss_pred HH-ccCCEEEEEeCcchH-HHHHHHH
Confidence 54 347799999999874 3445543
No 135
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=1.2e-21 Score=215.62 Aligned_cols=165 Identities=8% Similarity=-0.003 Sum_probs=108.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeE-EEeCCCEEEEECCCCChHHHHHHH--HhcCcCCCccEEEECCC----------eeEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNL--LKGELTPNKGELRKSPR----------LRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~-~i~~Ge~~~ivG~NGsGKSTLlk~--l~G~~~p~~G~i~~~~~----------~~i~ 402 (568)
++.+++.. |+++.++|++|+| +|++|++++|+||||||||||+++ ++|+++|++|.|++... ..+|
T Consensus 13 ~~~~~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 13 SEHQAIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp -CCSSCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred cccccccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 33444543 4467789999999 999999999999999999999999 78999999998876431 1234
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCC-ccccCCCCCCCHhHHHHHHHHHHH-ccCCCeEEEeCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELT-LNNPDILILDEP 480 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~al-~~~p~lLlLDEP 480 (568)
|++|++... . + +..+.... .....-...+.-++ ..-.++..| -.+|++++||||
T Consensus 92 ~~~q~~~~~--~--~-------------------l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 92 WDLAKLVDE--G--K-------------------LFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp CCHHHHHHT--T--S-------------------EEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECS
T ss_pred CChHHhhcc--C--c-------------------EEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCH
Confidence 444432110 0 0 00000000 00000112222222 233334444 257999999999
Q ss_pred CCC-----CCHHHHHHHHHHHHh---cCceEEEEecchHHH---------HhhCceEEEEEC
Q psy16366 481 TNN-----LDIESIDALAEAIKN---YQGGVILVSHDERLI---------RETDCELWALEK 525 (568)
Q Consensus 481 t~~-----LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i---------~~~~~~i~~l~~ 525 (568)
|+. ||+..+..+.++++. .+.|||+|||+++.+ ..+||++++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 984 688888887777754 478999999999884 566999999998
No 136
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2.2e-18 Score=157.70 Aligned_cols=78 Identities=36% Similarity=0.509 Sum_probs=69.6
Q ss_pred CCCCCCCHhHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA------~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~ 519 (568)
+++.+|||||||||+|| |+|+.+|++|||||||+|||+.+...+.+.|.++ +.|||+||||.+ +..+|++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCE
Confidence 47899999999999876 8999999999999999999999999999999876 469999999995 5679999
Q ss_pred EEEE--ECCe
Q psy16366 520 LWAL--EKKN 527 (568)
Q Consensus 520 i~~l--~~g~ 527 (568)
+++| .+|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4554
No 137
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.75 E-value=2.3e-19 Score=206.74 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=92.1
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhc
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~ 426 (568)
++.+++||||++.+|++++|+||||||||||||+|+++... ..|.........++++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d--------------------- 717 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD--------------------- 717 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---------------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---------------------
Confidence 46789999999999999999999999999999999754211 11110000011122110
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-HHHH----hcCc
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK----NYQG 501 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~----~~~~ 501 (568)
+++..+|+...... ..+++|+|+++++.++++ +.+|+||||||||+|||+.....+. ..+. +.+.
T Consensus 718 --------~i~~~ig~~d~l~~-~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~ 787 (918)
T 3thx_B 718 --------GIFTRMGAADNIYK-GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKS 787 (918)
T ss_dssp --------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred --------HHHHhCChHHHHHH-hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 01222333332322 457899999999999999 8999999999999999998776665 3332 2478
Q ss_pred eEEEEecchHHHH
Q psy16366 502 GVILVSHDERLIR 514 (568)
Q Consensus 502 tvi~vsHd~~~i~ 514 (568)
+||+||||.+++.
T Consensus 788 tvl~vTH~~el~~ 800 (918)
T 3thx_B 788 LTLFVTHYPPVCE 800 (918)
T ss_dssp EEEEECSCGGGGG
T ss_pred eEEEEeCcHHHHH
Confidence 9999999998764
No 138
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.73 E-value=9.1e-18 Score=193.25 Aligned_cols=105 Identities=29% Similarity=0.405 Sum_probs=91.7
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEec
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 508 (568)
.+.|..+||......+++.+|||||+|||+|||+|+++|+ +|||||||+|||+.....|.+.|+++ +.|||+|||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4568889998654456889999999999999999999887 99999999999999999999999876 569999999
Q ss_pred chHHHHhhCceEEEE------ECCeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWAL------EKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~~ 540 (568)
|++++.. ||++++| .+|+++ +.|+++++.+
T Consensus 525 d~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~ 560 (916)
T 3pih_A 525 DEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK 560 (916)
T ss_dssp CHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred CHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence 9999875 9999999 777775 6789888754
No 139
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.72 E-value=2.6e-18 Score=169.52 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=94.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh--cCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~--G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
+++++++.+|++-..++.+ .|++|++++|+||||||||||+++|+ |++++..|.+.... ..
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~---------~~----- 69 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL---------EE----- 69 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES---------SS-----
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc---------cC-----
Confidence 4556666666321123322 78999999999999999999999999 66455555443221 10
Q ss_pred CCCCHHHHH--HHhcCCCHHHHHH--HHHhCCC-------CCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 414 PDDTPCEYL--MKLFNLPYEKSRR--QLGMFGL-------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 414 ~~~~~~e~l--~~~~~~~~~~~~~--~L~~~~l-------~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
...+.. ....+...+.... .+..+.. ............+.++........+-..+|++|+|||||+
T Consensus 70 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~ 146 (251)
T 2ehv_A 70 ---RARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPS 146 (251)
T ss_dssp ---CHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHH
T ss_pred ---CHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHH
Confidence 011100 0111122111100 0000000 0000000112344566666666666678999999999999
Q ss_pred CCC-----HHHHHHHHHHH---HhcCceEEEEecchHHH---------HhhC-ceEEEEE
Q psy16366 483 NLD-----IESIDALAEAI---KNYQGGVILVSHDERLI---------RETD-CELWALE 524 (568)
Q Consensus 483 ~LD-----~~~~~~l~~~l---~~~~~tvi~vsHd~~~i---------~~~~-~~i~~l~ 524 (568)
+|| +.....+.+++ ++.+.|||+|||+...+ ..+| |++++|+
T Consensus 147 ~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 147 IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 997 45444455544 45688999999999998 6787 9999995
No 140
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=1.5e-17 Score=161.88 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=87.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.|++|++++|+||||||||||+++|+|.+.|..|.... ...+-|+.... .+.. ....++....+...+ .++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~--~~~~i~~~~~~---~~~~-~~i~~~~~~~~~~~~---~~~ 91 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL--NGSVIWIDTEN---TFRP-ERIREIAQNRGLDPD---EVL 91 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC--SCEEEEEESSS---CCCH-HHHHHHHHHTTSCHH---HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCC--CCEEEEEECCC---CCCH-HHHHHHHHHcCCCHH---HHh
Confidence 68999999999999999999999999965553332111 11223333221 1110 011122222333333 222
Q ss_pred HhCCCCCccccCCCCCCCHhHH-HHHHHHHHHcc-------CCCeEEEeCCCCCCCHH----------------HHHHHH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQK-ARVALAELTLN-------NPDILILDEPTNNLDIE----------------SIDALA 493 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqk-qRv~lA~al~~-------~p~lLlLDEPt~~LD~~----------------~~~~l~ 493 (568)
+.+.+ ...++++++ +.+..+..++. +|++|+|||||+++|+. ....|.
T Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~ 163 (231)
T 4a74_A 92 KHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 163 (231)
T ss_dssp HTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHH
Confidence 22211 123445443 33555555544 99999999999999983 122333
Q ss_pred HHHHhcCceEEEEec----chHHHHhhCceEEEEECC
Q psy16366 494 EAIKNYQGGVILVSH----DERLIRETDCELWALEKK 526 (568)
Q Consensus 494 ~~l~~~~~tvi~vsH----d~~~i~~~~~~i~~l~~g 526 (568)
+..++.+.|||+||| +-..+..+|+.+++|++|
T Consensus 164 ~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 164 RLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 333456889999999 555599999999999875
No 141
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.70 E-value=7.1e-20 Score=176.84 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=108.6
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC----CCHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSR 434 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----~~~~~~~ 434 (568)
..+|++++|+||||||||||+++|+|++.| .++|++|++...-....++.+.....++ ...+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 468999999999999999999999999876 4789999874221245566665432222 2345677
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHH----HHHHHHHHHccCCCeEEEeCCCCC-------CCHHHHHHHHHHHHhc----
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQK----ARVALAELTLNNPDILILDEPTNN-------LDIESIDALAEAIKNY---- 499 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqk----qRv~lA~al~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~~~---- 499 (568)
+.+..+++...... |+..+|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~~~-~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPVEM-PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCEEE-CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcCC-CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 78888888766654 7889999964 788999999999999999999999 8988877777776543
Q ss_pred CceEEEEecch
Q psy16366 500 QGGVILVSHDE 510 (568)
Q Consensus 500 ~~tvi~vsHd~ 510 (568)
+.|+++++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999985
No 142
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=2.3e-17 Score=160.52 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=105.0
Q ss_pred CceeeeeeeE-EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH--
Q psy16366 348 GKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-- 424 (568)
Q Consensus 348 ~~~il~~vs~-~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~-- 424 (568)
+.+.|+++.+ .|.+|++++|+||||||||||++.|++...+..|.+. |+..+. +..+....
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~--------~~~~~~--------~~~~~~~~~~ 71 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI--------YVTTEE--------SRDSIIRQAK 71 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE--------EEESSS--------CHHHHHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE--------EEEccc--------CHHHHHHHHH
Confidence 3456888887 8999999999999999999999999998877666543 332211 11111110
Q ss_pred hcCCCHHHHHH-HHHhCC-CCCcc-ccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCC--CHHHHHHHHHHHH
Q psy16366 425 LFNLPYEKSRR-QLGMFG-LPSYA-HTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNL--DIESIDALAEAIK 497 (568)
Q Consensus 425 ~~~~~~~~~~~-~L~~~~-l~~~~-~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l~ 497 (568)
..+...+.... .+..+. +.... ........|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~ 151 (235)
T 2w0m_A 72 QFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLK 151 (235)
T ss_dssp HTTCCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHH
T ss_pred HhcchHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHH
Confidence 11111100000 000000 00000 000113459999999888888888999 99999999888 9877777766664
Q ss_pred ----hcCceEEEEecch--------HHHHhhCceEEEEECC
Q psy16366 498 ----NYQGGVILVSHDE--------RLIRETDCELWALEKK 526 (568)
Q Consensus 498 ----~~~~tvi~vsHd~--------~~i~~~~~~i~~l~~g 526 (568)
+.+.|||++||+. ..+..+||++++|...
T Consensus 152 ~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 152 RVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 4577999999999 5588999999999753
No 143
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.69 E-value=3.2e-17 Score=188.25 Aligned_cols=103 Identities=25% Similarity=0.319 Sum_probs=88.7
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC--CCeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~--p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.|..+||......+++.+|||||+|||+||++|.++ |.||||||||+|||+...+.|.+.|++ .+.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 477889875433458899999999999999999998 589999999999999999999888765 478999999999
Q ss_pred HHHHhhCceEEEE------ECCeEEEEcCCHHHHHH
Q psy16366 511 RLIRETDCELWAL------EKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 511 ~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~~ 540 (568)
+++. .||+|++| .+|+++ +.|+++++.+
T Consensus 584 ~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~ 617 (993)
T 2ygr_A 584 DTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLR 617 (993)
T ss_dssp HHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHH
T ss_pred HHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhh
Confidence 9986 69999999 577775 6789988865
No 144
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.68 E-value=3.5e-17 Score=187.32 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=87.9
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.|..+||......+++.+|||||+|||+||++|.++| .||||||||+|||+...+.|.+.|++ .+.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4788999865345688999999999999999999985 99999999999999999999888765 467999999999
Q ss_pred HHHHhhCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 511 RLIRETDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 511 ~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
+++. .||+|++| .+|+++ +.|+++++.
T Consensus 567 ~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~ 599 (972)
T 2r6f_A 567 DTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 599 (972)
T ss_dssp HHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTT
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHH
Confidence 9986 69999999 677876 677777664
No 145
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=1.4e-19 Score=185.16 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=77.3
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC-cCCCccEEEEC--------CCeeEEEEecCCC
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE-LTPNKGELRKS--------PRLRIGKFDQHSG 409 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~-~~p~~G~i~~~--------~~~~i~~~~q~~~ 409 (568)
.||++.| +++.++++++|+| +|+||||||||||+++|+|. +.|++| +... ....+++++|...
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 4788999 6788999999998 99999999999999999998 888888 4321 1234677777542
Q ss_pred CCCCCCCCHHHHHHHhcCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC-CCHH
Q psy16366 410 EHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN-LDIE 487 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~-LD~~ 487 (568)
++..+++++........ ..+..+.++.. +.... ..++.++|||||||+.+||+++ +|++||||++ ||+.
T Consensus 74 --~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 74 --VKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHH-HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred --cccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 23333333321110000 00000111110 00111 1356789999999999999886 9999999985 9998
Q ss_pred HHHHHHHHHHh-cCceEEEEecchH
Q psy16366 488 SIDALAEAIKN-YQGGVILVSHDER 511 (568)
Q Consensus 488 ~~~~l~~~l~~-~~~tvi~vsHd~~ 511 (568)
..+ ++..+.. .+.++|+++||+.
T Consensus 145 ~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 145 DVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred HHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 753 3333333 3568899999973
No 146
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.66 E-value=1e-16 Score=183.01 Aligned_cols=103 Identities=26% Similarity=0.328 Sum_probs=88.2
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.|..+||......+++.+|||||+|||+||++|+.+| .||||||||+|||+..++.|.++|+. .+.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5888999865344688999999999999999999999 49999999999999999998887754 478999999999
Q ss_pred HHHHhhCceEEEE------ECCeEEEEcCCHHHHHH
Q psy16366 511 RLIRETDCELWAL------EKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 511 ~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~~ 540 (568)
+++. .||+|++| .+|+++ +.|+++++.+
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKH 475 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHh
Confidence 9875 69999999 677775 6788877643
No 147
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.66 E-value=1.7e-17 Score=189.48 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhc
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~ 426 (568)
++.+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........+++++| ++...+..+.+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~-----i~~~~~~~d~l---- 663 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR-----IFTRVGAADDL---- 663 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE-----EEEEEC---------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH-----HHhhCCHHHHH----
Confidence 45789999999 9999999999999999999999999743 2334211111223444333 22222222211
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH----HHHHHHHHh-cCc
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKN-YQG 501 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~----~~l~~~l~~-~~~ 501 (568)
. ...+.+|+++++ ++.+...+.+|+++||||||+|+|+... ..+.+.+.+ .+.
T Consensus 664 --------------------~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~ 721 (800)
T 1wb9_A 664 --------------------A-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721 (800)
T ss_dssp ---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC
T ss_pred --------------------H-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCC
Confidence 1 123457777765 4444556899999999999888887443 344555555 478
Q ss_pred eEEEEecchHHHHhhCceEEEEECC
Q psy16366 502 GVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 502 tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
++|++|||.+++. +|+++..+.++
T Consensus 722 ~vl~~TH~~el~~-l~d~~~~v~n~ 745 (800)
T 1wb9_A 722 LTLFATHYFELTQ-LPEKMEGVANV 745 (800)
T ss_dssp EEEEECSCGGGGG-HHHHSTTEEEE
T ss_pred eEEEEeCCHHHHH-HhhhhhceEEE
Confidence 9999999998764 66654333333
No 148
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=1.4e-17 Score=173.79 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=92.5
Q ss_pred EeeEEEeCC-CceeeeeeeE-------EEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-ccEEEECCCeeEEEEecCCC
Q psy16366 339 HDVTFGYPG-GKVLLEKVNF-------GLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 339 ~~v~~~y~~-~~~il~~vs~-------~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~~~~q~~~ 409 (568)
..++++|.. ..+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|.. + .++.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t--------~-ed~~ 162 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT--------I-EDPI 162 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE--------E-ESSC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE--------c-cCcH
Confidence 345555522 2344555555 67889999999999999999999999999987 455531 1 1111
Q ss_pred CCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q psy16366 410 EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~ 489 (568)
........ . . +.. .. .....+|..+ +||++|.++|++||+|||| |.++.
T Consensus 163 e~~~~~~~--~----~----------------v~q-~~-~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~ 211 (356)
T 3jvv_A 163 EFVHESKK--C----L----------------VNQ-RE-VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETI 211 (356)
T ss_dssp CSCCCCSS--S----E----------------EEE-EE-BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred Hhhhhccc--c----c----------------eee-ee-eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH
Confidence 11000000 0 0 000 00 0011233333 9999999999999999999 88887
Q ss_pred HHHHHHHHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 490 DALAEAIKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 490 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
..+.++.. .+.+||+++|+.+.+ .+++|++.|
T Consensus 212 ~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 212 RLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp HHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHT
T ss_pred HHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhh
Confidence 77777654 378999999999887 456666544
No 149
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=4.4e-19 Score=170.47 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=96.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc-----CCCccEEEECCCe----eEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGELRKSPRL----RIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~~----~i~~~~ 405 (568)
+|+++|++|.| + .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...... .+.++.
T Consensus 3 ~l~~~~~~~~~-~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVM-S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEE-E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhhee-e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 57899999999 3 467877 889999999999999999999999999998 7888875421100 111111
Q ss_pred cCCCCCC--CCCCC-------HHHHHHH--hc-----------CCCH--HHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 406 QHSGEHL--FPDDT-------PCEYLMK--LF-----------NLPY--EKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 406 q~~~~~l--~~~~~-------~~e~l~~--~~-----------~~~~--~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
-+.... .+... ...++.. .. .... ..+..++..++++...-..++..+|+||+||
T Consensus 79 -t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 79 -LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp -CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred -CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 111000 00000 0111110 00 1122 2355567777876543223578899999999
Q ss_pred -HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 462 -VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 462 -v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
+..+++++.+|.++++|||||++|..+++.+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999888764
No 150
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.64 E-value=4.5e-16 Score=157.15 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=95.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC----CCeeEEEEecCCCCCCCCCCCHHHHHHH-hcCCCHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEK 432 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~----~~~~i~~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~ 432 (568)
.|.+|++++|+||||||||||++.|++.+. .|.+... ....+.|+..+.. . ......+.. ........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhh
Confidence 478999999999999999999999998664 3433211 1234666654321 0 011112211 12344455
Q ss_pred HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC--CCCHHH---HHHHHHHH----HhcCceE
Q psy16366 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN--NLDIES---IDALAEAI----KNYQGGV 503 (568)
Q Consensus 433 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~--~LD~~~---~~~l~~~l----~~~~~tv 503 (568)
...+++.+++..... .++..||+||.+++ ++++.+|++||+||||+ ++|... ...+...| ++.+.||
T Consensus 99 ~~~~~~~l~l~~~~~-~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQPLIG-SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECCCTT-SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEeecCC-CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 566778888776544 46889999997765 57788999999999999 999733 34555544 3457899
Q ss_pred EEEecchHHHH
Q psy16366 504 ILVSHDERLIR 514 (568)
Q Consensus 504 i~vsHd~~~i~ 514 (568)
|+|||+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987763
No 151
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=2.3e-15 Score=141.15 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=77.3
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 522 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~ 522 (568)
+++..||||||||++||++|+ .+|+++||||||++||+.+...+.+.|.++ +.++|+|||+...+ ..|++++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 357899999999999999997 457999999999999999999999999876 35899999998765 67999985
Q ss_pred E--ECCeEEEEcCCHHHHHHH
Q psy16366 523 L--EKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 523 l--~~g~i~~~~g~~~~~~~~ 541 (568)
+ .+|....+..+.+++.+.
T Consensus 139 v~~~~g~s~~~~~~~~~~~~~ 159 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMKI 159 (173)
T ss_dssp EEEETTEEEEEECCHHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHHH
Confidence 5 577666666777777653
No 152
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.62 E-value=2e-17 Score=169.18 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCCCCHHHHHH
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLM 423 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~~~~~e~l~ 423 (568)
+|++++|+||||||||||+++|+|+++|++|+|.... +..+++++|++. +++..++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 6899999999999999999999999999999987532 134788998763 455555555543
Q ss_pred Hhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 424 KLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 424 ~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
... +.. ..+++..|+.+.. ...++..++||++|||+++.+|+ +|.|| |+++.+. ...+..+-...
T Consensus 179 ~~~~~~~d----~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAV 247 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHH
T ss_pred HHHhCCCC----EEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHc
Confidence 210 000 0012233332211 12345566999999999999999 67778 6777653 23333333455
Q ss_pred CceEEEEecchHHH---------HhhCceEEEEECCe
Q psy16366 500 QGGVILVSHDERLI---------RETDCELWALEKKN 527 (568)
Q Consensus 500 ~~tvi~vsHd~~~i---------~~~~~~i~~l~~g~ 527 (568)
+.|+|++||+.... ..+...|..+..|+
T Consensus 248 ~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 248 GLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp CCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred CCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 88999999986432 22334677777775
No 153
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=3.7e-17 Score=173.92 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=92.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccE--EEE--C---CCeeEEEEec
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRK--S---PRLRIGKFDQ 406 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~--i~~--~---~~~~i~~~~q 406 (568)
.+|.++||++.| +++.+++++||+| +|+|+||||||||+++|+|...|..|. +.. . ....+++++|
T Consensus 10 ~~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 468899999999 6778999999997 999999999999999999998765441 111 0 1234677777
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC---eEEEeCCC-
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD---ILILDEPT- 481 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~---lLlLDEPt- 481 (568)
... ++..+++++.+....... ....+.+... .. ..++.++++|++|||+++.+|+ +|++||||
T Consensus 83 ~~~--~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~------i~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 83 EGG--VQLLLTIVDTPGFGDAVDNSNCWQPVIDY------ID----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHH------HH----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred cCC--cccceeeeechhhhhhccchhhHHHHHHH------HH----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 543 333344433221100000 0000111111 00 1356677889999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecchHH
Q psy16366 482 NNLDIESIDALAEAIKNYQGGVILVSHDERL 512 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 512 (568)
++||+.... +++.|.. +.+||+|.|-.+.
T Consensus 151 ~~L~~~d~~-~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 151 HGLKPLDIE-FMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CSCCHHHHH-HHHHHTT-TSEEEEEEESTTS
T ss_pred cCCCHHHHH-HHHHHhc-cCcEEEEEEcccC
Confidence 699987753 3444544 5677888776554
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.59 E-value=6.3e-15 Score=142.30 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=96.9
Q ss_pred eeeeeeeE-EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHH--HHHhc
Q psy16366 350 VLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY--LMKLF 426 (568)
Q Consensus 350 ~il~~vs~-~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~--l~~~~ 426 (568)
+.|+.+.. .|.+|++++|+||||||||||++.|++ .+ .+ .+.|+..+. .+ +.... .....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~--------~v~~i~~~~--~~----~~~~~~~~~~~~ 69 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GK--------KVAYVDTEG--GF----SPERLVQMAETR 69 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CS--------EEEEEESSC--CC----CHHHHHHHHHTT
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CC--------cEEEEECCC--CC----CHHHHHHHHHhc
Confidence 34555554 688999999999999999999999999 22 22 244554332 11 22111 11122
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhH--HHHHHHHHHHccC-CCeEEEeCCCCCCCHHH--------HHHH---
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQ--KARVALAELTLNN-PDILILDEPTNNLDIES--------IDAL--- 492 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGq--kqRv~lA~al~~~-p~lLlLDEPt~~LD~~~--------~~~l--- 492 (568)
+...+. ++..+ .+..+|+++ +++++.+++++.+ |+++|+||||+.+|... ...+
T Consensus 70 ~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (220)
T 2cvh_A 70 GLNPEE---ALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV 137 (220)
T ss_dssp TCCHHH---HHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH
T ss_pred CCChHH---HhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH
Confidence 232222 22211 233455654 5678888899986 99999999999999732 2333
Q ss_pred -HHHHHhcCceEEEEecchH-------------HHHhhCceEEEEECC
Q psy16366 493 -AEAIKNYQGGVILVSHDER-------------LIRETDCELWALEKK 526 (568)
Q Consensus 493 -~~~l~~~~~tvi~vsHd~~-------------~i~~~~~~i~~l~~g 526 (568)
.++.++++.+||+++|... .+..+||.+++|+..
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 3333456889999999875 677899999999754
No 155
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=3.2e-17 Score=182.98 Aligned_cols=168 Identities=19% Similarity=0.305 Sum_probs=93.3
Q ss_pred CeEEEEeeEEEeCCC-ceeeeee----------eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECC----
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKV----------NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSP---- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~v----------s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~---- 397 (568)
+.+.++|+++.|+.. +++++.+ +|+++. +||+|||||||||||++|+|++.| ++|.|.+.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 467899999999421 3455444 355554 999999999999999999999988 799875432
Q ss_pred ----------CeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ----------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..++.+++... ...+...+. .+| ++++.++.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~~--------~~~~~~~~~----------~~s---~~~i~l~i~ 142 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINKA--------QNAIAGEGM----------GIS---HELITLEIS 142 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHHH--------HHHHHCSSS----------CCC---SCCEEEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHHHHHHHH--------HHHhcCCcc----------ccc---hHHHHHHhc
Confidence 346888888763 55555555544321 111111110 011 111223333
Q ss_pred HccCCCeEEEeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecchHH--------HHhh----CceEEEEE
Q psy16366 468 TLNNPDILILDEP------TNNLDIESIDALAEAIKNY-----QGGVILVSHDERL--------IRET----DCELWALE 524 (568)
Q Consensus 468 l~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~--------i~~~----~~~i~~l~ 524 (568)
....|+++|+||| |++||+.....+.+++.++ ..+++++|||.++ +..+ +..|.++.
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec
Confidence 4458999999999 9999999999999988875 3478999999763 3333 24567776
Q ss_pred CCe
Q psy16366 525 KKN 527 (568)
Q Consensus 525 ~g~ 527 (568)
++.
T Consensus 223 K~D 225 (608)
T 3szr_A 223 KPD 225 (608)
T ss_dssp CGG
T ss_pred chh
Confidence 543
No 156
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.55 E-value=4.8e-15 Score=162.62 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCCC-CHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEE
Q psy16366 449 IPIRDL-SGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 449 ~~~~~L-SgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|.++ +.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 367888 999999999999999999 999999999999999999999988766 679999999999886 69999999
Q ss_pred ECC
Q psy16366 524 EKK 526 (568)
Q Consensus 524 ~~g 526 (568)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 157
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.55 E-value=3.1e-16 Score=163.59 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=90.0
Q ss_pred eeeee-eEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC
Q psy16366 351 LLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 427 (568)
Q Consensus 351 il~~v-s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~ 427 (568)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|+.|.. ...+-|+.-.. .+.. .-..++....+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~----~G~vi~i~~e~---~~~~-~~i~~i~q~~~ 190 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL----NGSVIWIDTEN---TFRP-ERIREIAQNRG 190 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSC----SCEEEEEESSS---CCCH-HHHHHHHHTTT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCC----CCeEEEEeCCC---CCCH-HHHHHHHHHcC
Confidence 45554 6899999999999999999999999999988 6766310 01122333221 1100 00111222223
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc-------cCCCeEEEeCCCCCCCHHH------------
Q psy16366 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-------NNPDILILDEPTNNLDIES------------ 488 (568)
Q Consensus 428 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~-------~~p~lLlLDEPt~~LD~~~------------ 488 (568)
+... .+++.+-+. . . .-|.+|++++.++++++ .+|++||+||||++||+..
T Consensus 191 ~~~~---~v~~ni~~~----~-~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~ 260 (349)
T 1pzn_A 191 LDPD---EVLKHIYVA----R-A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK 260 (349)
T ss_dssp CCHH---HHGGGEEEE----E-C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHH
T ss_pred CCHH---HHhhCEEEE----e-c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHH
Confidence 3322 222222111 0 1 12688999999999998 6899999999999999852
Q ss_pred HHHHHHHH----HhcCceEEEEecchHHHH
Q psy16366 489 IDALAEAI----KNYQGGVILVSHDERLIR 514 (568)
Q Consensus 489 ~~~l~~~l----~~~~~tvi~vsHd~~~i~ 514 (568)
...+...| ++++.|||+++|+...+.
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 33444433 345789999999987554
No 158
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.51 E-value=8e-16 Score=150.00 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=88.0
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECCC-------eeEEEEecCCCCCCCCCCCHHHHHHHhcC
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 427 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-------~~i~~~~q~~~~~l~~~~~~~e~l~~~~~ 427 (568)
-..++|++++|+||||||||||+++|+|+++| ..|.|....+ ..++|+||++. +| +.+..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--~f------~~~~~--- 79 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--EF------KEMIS--- 79 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--HH------HHHHH---
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--HH------HHHHh---
Confidence 35689999999999999999999999999986 5777654321 12455555431 11 11100
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEe
Q psy16366 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVS 507 (568)
Q Consensus 428 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vs 507 (568)
.-.+..+.. ....+.|-.+++ +..++..++++||| ||+.+...+.+.+. .+.+|+++|
T Consensus 80 -----------~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~t 137 (219)
T 1s96_A 80 -----------RDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILP 137 (219)
T ss_dssp -----------TTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEEC
T ss_pred -----------cCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEEC
Confidence 000000000 001111111222 34455678999999 99999999999887 367999999
Q ss_pred cchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHH
Q psy16366 508 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLT 544 (568)
Q Consensus 508 Hd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~ 544 (568)
||++.+.. |+ +..| .++.+++.+.+..
T Consensus 138 h~~~~l~~---Rl--~~rG-----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 138 PSKIELDR---RL--RGRG-----QDSEEVIAKRMAQ 164 (219)
T ss_dssp SSHHHHHH---HH--HTTS-----CSCHHHHHHHHHH
T ss_pred CCHHHHHH---HH--HHcC-----CCCHHHHHHHHHH
Confidence 99998875 32 4555 3566666654433
No 159
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.50 E-value=1.8e-15 Score=159.10 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=81.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-ccEEEECC-------CeeEEEEecCCCCCCCCCCCHHHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEY 421 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~-------~~~i~~~~q~~~~~l~~~~~~~e~ 421 (568)
++|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|.... +..+++++|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------- 189 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 189 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--------------
Confidence 3567665 7899999999999999999999999999997 89885321 0111222221
Q ss_pred HHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc
Q psy16366 422 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501 (568)
Q Consensus 422 l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 501 (568)
.+|+. +..| +.+|+++|..+|++||+|||| |.++...+.+.. ..+.
T Consensus 190 -----------------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~ 235 (372)
T 2ewv_A 190 -----------------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGH 235 (372)
T ss_dssp -----------------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTC
T ss_pred -----------------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCC
Confidence 12221 1344 469999999999999999999 888766655554 3467
Q ss_pred eEEEEecchH
Q psy16366 502 GVILVSHDER 511 (568)
Q Consensus 502 tvi~vsHd~~ 511 (568)
+||+++|+.+
T Consensus 236 ~vi~t~H~~~ 245 (372)
T 2ewv_A 236 LVFGTLHTNT 245 (372)
T ss_dssp EEEECCCCCS
T ss_pred EEEEEECcch
Confidence 8999999865
No 160
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.48 E-value=8e-16 Score=161.22 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=111.3
Q ss_pred EEEeeEEE---eCC-Cceee---------eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----
Q psy16366 337 GLHDVTFG---YPG-GKVLL---------EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----- 398 (568)
Q Consensus 337 ~~~~v~~~---y~~-~~~il---------~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----- 398 (568)
.+++++|+ |++ +.++| +++||.|.+|+.++|+||||||||||+++|+|+++|++|.|.....
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56778887 742 23455 9999999999999999999999999999999999999999876421
Q ss_pred ----eeEEEEe-cCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 399 ----LRIGKFD-QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 399 ----~~i~~~~-q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..+++++ |++. ..++++...+..|+.++...|+
T Consensus 217 ~~~~~~v~~v~~q~~~------------------------------------------~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK------------------------------------------EEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TTCSSEEEEECC----------------------------------------------------CCHHHHHHHHTTSCCS
T ss_pred cccCCEEEEeecCccc------------------------------------------cccccccCHHHHHHHHHhcCCC
Confidence 1233333 2110 0123445678899999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
.+++|||+. .+.. .+.+.+..-..|+|.++|+.. +...++|+..+..+.......+++..+..+...+..
T Consensus 255 ~~l~~e~r~---~~~~-~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 324 (361)
T 2gza_A 255 RILLAELRG---GEAY-DFINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVDV 324 (361)
T ss_dssp EEEESCCCS---THHH-HHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHCCE
T ss_pred EEEEcCchH---HHHH-HHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHHHHHHcCE
Confidence 999999986 2222 234444433347899999976 667788888776654211133555565555555543
No 161
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=3.9e-15 Score=157.87 Aligned_cols=166 Identities=14% Similarity=0.050 Sum_probs=100.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCE--EEEECCCCChHHHHHHHHhcCcCCCccEEEE--C---CCeeEEEEecC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK--S---PRLRIGKFDQH 407 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~--~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~--~---~~~~i~~~~q~ 407 (568)
.|++.+ +++| ++.+ |+++||+|.+|++ ++|+||||||||||+++|+|+.- .|.... . .+..++|++|+
T Consensus 16 ~l~~~~-~~~y-~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGF-DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-C-C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEE-CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 345666 7889 5666 9999999999999 99999999999999999999842 222111 0 12368999997
Q ss_pred CCCCCCCCCCHHHHHHHhcCCC------------HHHHHHHHHhC-CCCCc----cccC---------C-CCCCCHhHHH
Q psy16366 408 SGEHLFPDDTPCEYLMKLFNLP------------YEKSRRQLGMF-GLPSY----AHTI---------P-IRDLSGGQKA 460 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~~~~~------------~~~~~~~L~~~-~l~~~----~~~~---------~-~~~LSgGqkq 460 (568)
+. +++..|+.+++....... ...+..+|... ++... .+.+ + -..|+-..
T Consensus 91 ~~--l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 91 SN--VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp ----CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred Cc--cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 53 333334333221100011 12233445444 43310 1110 0 02456555
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecch
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDE 510 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~ 510 (568)
+.|+++|..+++|+++|+||..|.+.....+.+.+.+ .+.+|+++|.|-
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999888777777664 356889888764
No 162
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.45 E-value=9.7e-14 Score=147.70 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHhcCC--C--c--cCCCc---------hHHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEE----cC
Q psy16366 178 DAAEPRARRILAGLGF--T--T--IYIPS---------SRVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHL----DM 236 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~--~--~--L~~eP---------n~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L----~~ 236 (568)
.+.+++.+..|+..-+ . . ||||| .+|.++|+++ +.|||+||||++++. +||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 4778877766544211 1 2 78999 2777777776 589999999999874 79999999 89
Q ss_pred CeeeEE
Q psy16366 237 KKLFYY 242 (568)
Q Consensus 237 g~l~~~ 242 (568)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 988754
No 163
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=3.5e-13 Score=141.62 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=68.5
Q ss_pred CCCCCCCHhHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKARV------ALAELTLNN-PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkqRv------~lA~al~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~ 519 (568)
.++..|||||+||| ++|++++.+ |++|||||||++||+.....+.+.|.++. .+||+||||.+ +..+|++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 36689999999988 567889999 99999999999999999999999998863 58999999987 5688999
Q ss_pred EEEEE-CCe
Q psy16366 520 LWALE-KKN 527 (568)
Q Consensus 520 i~~l~-~g~ 527 (568)
+++|+ +|.
T Consensus 355 ~~~l~k~~~ 363 (371)
T 3auy_A 355 IINVKKDGN 363 (371)
T ss_dssp EEEEEESSS
T ss_pred EEEEEecCC
Confidence 99997 443
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=9.6e-13 Score=128.87 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc--CcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|.+|++++|+||||||||||++.|++ .++|..|. ....+-|+.-.. .+....+.+. ....+...+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~----~~~~~~~i~~~~---~~~~~~~~~~-~~~~g~~~~~--- 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG----GEGKAMYIDTEG---TFRPERLLAV-AERYGLSGSD--- 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTC----CSSEEEEEESSS---CCCHHHHHHH-HHHTTCCHHH---
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCC----CCCeEEEEECCC---CcCHHHHHHH-HHHcCCCHHH---
Confidence 478999999999999999999999999 56552221 011233333221 1111011111 1223333332
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHH-HHHHHH--ccCCCeEEEeCCCCCCCHH-------H-----HHHHHHHH----
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARV-ALAELT--LNNPDILILDEPTNNLDIE-------S-----IDALAEAI---- 496 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv-~lA~al--~~~p~lLlLDEPt~~LD~~-------~-----~~~l~~~l---- 496 (568)
+++.+. ....++..+...+ .-+..+ ..+|+++++||||+.+|.. + ...+...|
T Consensus 89 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~ 160 (243)
T 1n0w_A 89 VLDNVA--------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA 160 (243)
T ss_dssp HHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCeE--------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 222211 1123566554432 222233 3589999999999999975 2 23333333
Q ss_pred HhcCceEEEEecchHHHH-------------------hhCceEEEEECC
Q psy16366 497 KNYQGGVILVSHDERLIR-------------------ETDCELWALEKK 526 (568)
Q Consensus 497 ~~~~~tvi~vsHd~~~i~-------------------~~~~~i~~l~~g 526 (568)
++.+.|||+++|...... .+||.+++|..+
T Consensus 161 ~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 161 DEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 345789999999765443 378999998854
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.39 E-value=2.5e-15 Score=148.70 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHh---cCcCCCccEEEECC---C----eeEEEEecCCCCCCCCCCCHHHHHHHh-----
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLK---GELTPNKGELRKSP---R----LRIGKFDQHSGEHLFPDDTPCEYLMKL----- 425 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~~~~---~----~~i~~~~q~~~~~l~~~~~~~e~l~~~----- 425 (568)
++++++|+||||||||||+++|+ |+..|+.|++.+.. . ..+++++|+. .+++..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 99999999875431 1 1233344543 245555665554321
Q ss_pred ------cCC--CHHHHHHHHHhCCCC-------------CccccCCCCCCCHhHHHHHHHHHHH-ccCCCeEEEe----C
Q psy16366 426 ------FNL--PYEKSRRQLGMFGLP-------------SYAHTIPIRDLSGGQKARVALAELT-LNNPDILILD----E 479 (568)
Q Consensus 426 ------~~~--~~~~~~~~L~~~~l~-------------~~~~~~~~~~LSgGqkqRv~lA~al-~~~p~lLlLD----E 479 (568)
.+. ....++.+.....+. .....+++..||| |+ +++ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 122 222233332212211 0111235678999 66 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q psy16366 480 PTNNLDIESIDALAEAIKNYQ 500 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~~ 500 (568)
||++||..+...+.+.|.++.
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHH
Confidence 999999999988888887763
No 166
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.39 E-value=2.9e-15 Score=157.18 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=88.1
Q ss_pred eeeeeEEEeC--CCEEEEECCCCChHHHHHHHHhcCcCCCc----cEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh
Q psy16366 352 LEKVNFGLDM--ESRVALVGPNGIGKSTFLNLLKGELTPNK----GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425 (568)
Q Consensus 352 l~~vs~~i~~--Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~----G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~ 425 (568)
...|+++|.+ |++++|+||||||||||+++|+|+++|+. |.+.+.... .... ..+ ..... ..+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~-~~~-~~~~~-~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDE-QAM-QYSDY-PQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCT-TSS-CTTTH-HHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCc-ccC-ChhHH-HHHHHH
Confidence 5679999999 99999999999999999999999999998 665321100 0000 011 11111 111111
Q ss_pred cCCCHHHHHHHHHhCCC--CCccccCCCCCCCHhHHHHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHHHH
Q psy16366 426 FNLPYEKSRRQLGMFGL--PSYAHTIPIRDLSGGQKARVALAELTL-NNPDILILDE---PT------NNLDIESIDALA 493 (568)
Q Consensus 426 ~~~~~~~~~~~L~~~~l--~~~~~~~~~~~LSgGqkqRv~lA~al~-~~p~lLlLDE---Pt------~~LD~~~~~~l~ 493 (568)
............+.+-+ ...... .+..+|+|++++..+++++. .+|+++|||| |+ .++|...+..+.
T Consensus 230 ~q~~~~~~~t~~~nl~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~ 308 (365)
T 1lw7_A 230 HQRYIDYAVRHSHKIAFIDTDFITT-QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ 308 (365)
T ss_dssp HHHHHHHHHHHCSSEEEESSCHHHH-HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH
T ss_pred HHHHHHHHHhccCCEEEEeCCchHH-HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH
Confidence 10000000011111100 111111 23456778888888888774 6999999999 65 589998888888
Q ss_pred HHHHh----cCceEEEEecc
Q psy16366 494 EAIKN----YQGGVILVSHD 509 (568)
Q Consensus 494 ~~l~~----~~~tvi~vsHd 509 (568)
++|.+ .+.+||+++|.
T Consensus 309 ~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 309 QLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHHHHcCCCEEEeCCC
Confidence 88743 36789999985
No 167
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.36 E-value=7.4e-15 Score=139.01 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=81.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe---------eEEEEecCCCCCCCCCCCHHHHHHHhc--
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL---------RIGKFDQHSGEHLFPDDTPCEYLMKLF-- 426 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---------~i~~~~q~~~~~l~~~~~~~e~l~~~~-- 426 (568)
.|.+|++++|+||||||||||+++|+|. |..|.|..+... .++|++|... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999998 678888765321 1233333211 1123333322100
Q ss_pred ---CCCHHHHHHHHHhCCCCCccc-cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--
Q psy16366 427 ---NLPYEKSRRQLGMFGLPSYAH-TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-- 500 (568)
Q Consensus 427 ---~~~~~~~~~~L~~~~l~~~~~-~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-- 500 (568)
+.....+..++..+++..... ..++..+|+|++|+++++|++..+|+++ +|+.....+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 000000000011111211110 2245689999999999999999999887 68888888888776542
Q ss_pred ceEEEEec
Q psy16366 501 GGVILVSH 508 (568)
Q Consensus 501 ~tvi~vsH 508 (568)
..+++.|+
T Consensus 151 ~~~~i~t~ 158 (191)
T 1zp6_A 151 EHHVLPVS 158 (191)
T ss_dssp GGGEEECT
T ss_pred cccEEECC
Confidence 23444454
No 168
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.35 E-value=1.8e-12 Score=138.87 Aligned_cols=75 Identities=28% Similarity=0.355 Sum_probs=67.4
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecchHHHHhhCceEE
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~~~i~ 521 (568)
.++..||||||||++||++|+ .+|++|||||||++||+..+..|.+.|.++. .++|+|||+..++ ..|++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 456789999999999999999 5899999999999999999999999998863 5899999998765 5799999
Q ss_pred EEE
Q psy16366 522 ALE 524 (568)
Q Consensus 522 ~l~ 524 (568)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 169
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.35 E-value=3e-14 Score=145.10 Aligned_cols=118 Identities=18% Similarity=0.092 Sum_probs=81.4
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHH
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 432 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~ 432 (568)
++++|+ +|++++|+|+||+||||++..|++.+.+..|.|. ++..++. .. ...+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~--------l~~~d~~----~~-~~~~ql---------- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL--------LVAADTQ----RP-AAREQL---------- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE--------EEECCSS----CH-HHHHHH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE--------EecCCcc----cH-hHHHHH----------
Confidence 556777 8999999999999999999999999988777654 3333321 00 111111
Q ss_pred HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC-CCCCCHHHHHHHHHHHHhc
Q psy16366 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP-TNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 433 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~~~ 499 (568)
..+....+++-.... ...+..+.+|.+|+++...+++++|+||| +.++|......+..+....
T Consensus 146 -~~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 146 -RLLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp -HHHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred -HHhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 112334455432111 12344566789999998899999999999 9999998888887776654
No 170
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.32 E-value=1.2e-14 Score=134.35 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=62.2
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCee------EEEEecCCCCCC
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------IGKFDQHSGEHL 412 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~------i~~~~q~~~~~l 412 (568)
.++++.| +++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|......- ..+++|++. +
T Consensus 11 ~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~--l 86 (158)
T 1htw_A 11 EFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD--L 86 (158)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE--C
T ss_pred HHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc--c
Confidence 4567778 5667899999999999999999999999999999999999 9999987543110 126788763 5
Q ss_pred CCCCCHHHHH
Q psy16366 413 FPDDTPCEYL 422 (568)
Q Consensus 413 ~~~~~~~e~l 422 (568)
+ .+++.+++
T Consensus 87 ~-~ltv~e~l 95 (158)
T 1htw_A 87 Y-RLADPEEL 95 (158)
T ss_dssp T-TCSCTTHH
T ss_pred c-cCCcHHHH
Confidence 5 66765554
No 171
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.32 E-value=3.2e-12 Score=119.39 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=28.8
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
|+||+|.+|++++|+||||||||||++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 6899999999999999999999999997654
No 172
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4.5e-15 Score=159.91 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=42.7
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
..+|+++|++++|+ ++||++.+|++++|+||||||||||+|+|+|...
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 34688889988885 7999999999999999999999999999999743
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.31 E-value=2e-13 Score=144.99 Aligned_cols=139 Identities=25% Similarity=0.313 Sum_probs=86.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc-----------CCCccEEEECCCeeEEEEecCCCCCCCCCCCHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----------TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-----------~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e 420 (568)
-++++|+++.|+.++|+|+|||||||||++|+|.. .|+.|.|.......+ .+.+.+. +... ..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~DtpG--li~~--a~- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIPG--IIEG--AS- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECCC--CCCC--GG-
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEeccc--cccc--hh-
Confidence 58999999999999999999999999999999983 233333332211111 1111111 1100 00
Q ss_pred HHHHhcCCCHHH------HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH---H
Q psy16366 421 YLMKLFNLPYEK------SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID---A 491 (568)
Q Consensus 421 ~l~~~~~~~~~~------~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~---~ 491 (568)
...++.... +..+|..+++. ..++.+||+|++|++++|++|+..|.||+| |.+|+.... .
T Consensus 221 ---~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~ 289 (416)
T 1udx_A 221 ---EGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKA 289 (416)
T ss_dssp ---GSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHH
T ss_pred ---hhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHH
Confidence 001111111 11123344444 236778999999999999999999999999 999986542 3
Q ss_pred HHHHHHhcCceEEEEe
Q psy16366 492 LAEAIKNYQGGVILVS 507 (568)
Q Consensus 492 l~~~l~~~~~tvi~vs 507 (568)
+.+.+.+.+.++|+||
T Consensus 290 l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 290 LADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHTTTSCEEECC
T ss_pred HHHHHHhcCCeEEEEE
Confidence 3334444455777666
No 174
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.30 E-value=1.1e-13 Score=148.78 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=101.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCC
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~ 414 (568)
-+++||++.+|++++|+|+||||||||+++|+|+++|+.|+|.+.. +..|+|++|++. +++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence 3678899999999999999999999999999999999999997631 224788888753 444
Q ss_pred CCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc-cCCC-eEEEeCCCCCCCHHHHH
Q psy16366 415 DDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-NNPD-ILILDEPTNNLDIESID 490 (568)
Q Consensus 415 ~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~-~~p~-lLlLDEPt~~LD~~~~~ 490 (568)
..++.+++.... +.+. -++...|...... .|-.--++++.+++++. ..|+ +||...||.|.|.. .
T Consensus 361 ~~tV~e~l~~a~~~~~Dv----VLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al--~ 429 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNIDV----LIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--S 429 (503)
T ss_dssp HHHHHHHHHHHHHTTCSE----EEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--H
T ss_pred HHHHHHHHHHHHhcCCCE----EEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH--H
Confidence 455555543211 1100 0112222221111 11122347788888664 4574 55555599886653 2
Q ss_pred HHHHHHHhcCceEEEEecchH---------HHHhhCceEEEEECCe
Q psy16366 491 ALAEAIKNYQGGVILVSHDER---------LIRETDCELWALEKKN 527 (568)
Q Consensus 491 ~l~~~l~~~~~tvi~vsHd~~---------~i~~~~~~i~~l~~g~ 527 (568)
.+..+-...+.|.|++||--. .+..+...|..+..|.
T Consensus 430 ~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 430 QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 222223346789999999333 3444556777777775
No 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=3.1e-15 Score=155.27 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=104.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC---------------CCee
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS---------------PRLR 400 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~---------------~~~~ 400 (568)
++++++++.| +...+++++||++.+|++++|+||||||||||+++|+|++.|+.|+|.+. .+.+
T Consensus 30 ie~~~~~~~~-~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRA-AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHH-HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCccccc-ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 4566777788 45679999999999999999999999999999999999999999998642 1234
Q ss_pred EEEEecCCCCCCCCCCC------------HHHHH--H-----------------------Hh-------cCCC-HHH---
Q psy16366 401 IGKFDQHSGEHLFPDDT------------PCEYL--M-----------------------KL-------FNLP-YEK--- 432 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~------------~~e~l--~-----------------------~~-------~~~~-~~~--- 432 (568)
+++++|++. +|...+ ..+.+ . .. .... ...
T Consensus 109 i~~v~q~~~--~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 109 MARLAIDRN--AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp STTGGGCTT--EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred heeeccCcc--cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 677787753 332111 01110 0 00 0000 000
Q ss_pred ----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 433 ----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 433 ----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
+.+....+.+. ..+..+...+|+|+++++..+.+++. .|++++ ||++|...++.|.+.|.++
T Consensus 187 i~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 01111112221 11111234689999999999999887 688876 9999999999999988764
No 176
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.29 E-value=1.3e-12 Score=135.83 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=78.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEEC--------CCeeEEEEecCCCCCCCCCCCHHHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKS--------PRLRIGKFDQHSGEHLFPDDTPCEYL 422 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~--------~~~~i~~~~q~~~~~l~~~~~~~e~l 422 (568)
++++++. .+|++++|+||||||||||+|+|+|... |+.|+|... ....+++++|+.. +++..++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh
Confidence 4555553 3799999999999999999999999999 999998753 2346889988753 44444554431
Q ss_pred HHhcCCCHHH----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 423 MKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 423 ~~~~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
..+.+.+. +.+++..+++..+.+ +++.+|| ||+||++||++++
T Consensus 283 --l~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 --LWHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp --CCCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTSS
T ss_pred --hcCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcCC
Confidence 22344433 335678888887665 4678999 9999999998753
No 177
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.27 E-value=3.5e-15 Score=158.77 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=93.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
++.++++++.| +...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.... ..
T Consensus 143 ~~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 45677787777 455688888 53 89999999999999999999999999999999986421 01
Q ss_pred eEEEEe---------cCCCCCCCCC----CCHHHHHHHh-cC---------CCHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 400 RIGKFD---------QHSGEHLFPD----DTPCEYLMKL-FN---------LPYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 400 ~i~~~~---------q~~~~~l~~~----~~~~e~l~~~-~~---------~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
.+++.+ |+|...++.+ .|+.+.+... .+ .+...+...|..+++.... .+..|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---ISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---HHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---HHHHHHH
Confidence 223433 6654222333 3555544321 11 1123344467788887543 4678999
Q ss_pred hHHHHHHHHHHHccCCCeEEE
Q psy16366 457 GQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlL 477 (568)
||+|| ||++|+.+|+++.-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999998763
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=6.6e-13 Score=124.65 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=72.1
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|.. +.|+ +..+.+.. ...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-------~~~~------------~~~~~~~~--------~~~ 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-------GYFF------------DTKDLIFR--------LKH 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-------CCEE------------EHHHHHHH--------HHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-------EEEE------------EHHHHHHH--------HHH
Confidence 45667899999999999999999999999988766631 1111 12222111 111
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNY---QGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~vsHd~ 510 (568)
..... ... -....+.+|++||||||++ ++|+.....+.+++... +.++|++||..
T Consensus 85 ~~~~~------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 85 LMDEG------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHT------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HhcCc------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11110 000 0112234899999999985 99999998888888653 67899999975
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.27 E-value=1.3e-12 Score=128.47 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=34.0
Q ss_pred ceEEeeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 59 DIKVENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 59 ~I~i~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
++.+++++..+.+- .++.+ .|.+|++++|+||||||||||+++|++
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45566666655432 23333 789999999999999999999999994
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.27 E-value=3.5e-13 Score=138.99 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=101.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCCCCHHHHH
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 422 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~~~~~e~l 422 (568)
.+|++++|+||||||||||+++|+|+++|+.|+|.... +..+.+++|.. .+++..++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHHH
Confidence 57999999999999999999999999999999987531 11244777654 355555555554
Q ss_pred HHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC
Q psy16366 423 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500 (568)
Q Consensus 423 ~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 500 (568)
.... +.+. -+++..|...... ..+.+|| .+++++..++.+++||.+|. .|. ...+..+-...+
T Consensus 205 ~~~~~~~~d~----vliDtaG~~~~~~-~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~~~ 269 (328)
T 3e70_C 205 QHAKARGIDV----VLIDTAGRSETNR-NLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEAVK 269 (328)
T ss_dssp HHHHHHTCSE----EEEEECCSCCTTT-CHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHHSC
T ss_pred HHHHhccchh----hHHhhccchhHHH-HHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHhcC
Confidence 3210 0000 0122223322111 1222333 48899999999999996664 433 222333333567
Q ss_pred ceEEEEecch---------HHHHhhCceEEEEECCeEEE--EcCCHHHHHHHH
Q psy16366 501 GGVILVSHDE---------RLIRETDCELWALEKKNIRK--FNGDFDDYREKL 542 (568)
Q Consensus 501 ~tvi~vsHd~---------~~i~~~~~~i~~l~~g~i~~--~~g~~~~~~~~~ 542 (568)
.|+|++||.- ..+......|..+..|+.+. ..-+.+.+...+
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~l 322 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERI 322 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHH
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHH
Confidence 8999999954 34455667888888886421 123455555443
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=3.5e-15 Score=141.32 Aligned_cols=157 Identities=12% Similarity=0.003 Sum_probs=91.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 436 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~ 436 (568)
|++++|+||||||||||+++|++ |..|.+..+.. ..+++++|... .....++.+.+.. .+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-------~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITD-------LTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHH-------HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHH-------HHHHH
Confidence 68999999999999999999987 66787765321 12233333210 0111122222211 01111
Q ss_pred HHhCCC----CC---ccccCCCCCC--CHhHHHHHHHHH------HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy16366 437 LGMFGL----PS---YAHTIPIRDL--SGGQKARVALAE------LTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 499 (568)
Q Consensus 437 L~~~~l----~~---~~~~~~~~~L--SgGqkqRv~lA~------al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 499 (568)
+. .+. +. .........+ |+|+++++.++. +++.+|....+|+ +||+..+.. .+.+..+
T Consensus 70 ~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~ 144 (189)
T 2bdt_A 70 LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI 144 (189)
T ss_dssp HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC
T ss_pred Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC
Confidence 11 110 00 0000112235 888888887777 8888888888884 899988777 6666654
Q ss_pred -CceEEEEecc-hHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 500 -QGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 500 -~~tvi~vsHd-~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+.+||.+||. ++.+.++|++|+ .+|+++ +.|+.+.+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCch
Confidence 4589999998 999999999997 888875 46666554
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.25 E-value=4.4e-12 Score=122.03 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=24.9
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+++.| .+|.+|++++|+||||||||||+++|+|..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356777 799999999999999999999999999963
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.24 E-value=9.5e-12 Score=113.66 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=65.9
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCH
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY 430 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~ 430 (568)
+++++ +|+.++|+||||+|||||+++|++.+.+ .|. ++.|++... +...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~---~~~~--------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAAS---MPLT--------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTT---SCCC---------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHH---hhHH---------------
Confidence 45555 8999999999999999999999999887 451 234444321 1111
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---Cce-EEEE
Q psy16366 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG-VILV 506 (568)
Q Consensus 431 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t-vi~v 506 (568)
+++.+|++||||||+. +|....+.|.++++.. +.+ +|++
T Consensus 79 ------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiit 121 (149)
T 2kjq_A 79 ------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLG 121 (149)
T ss_dssp ------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 2356899999999998 6655577777777643 567 8888
Q ss_pred ecc
Q psy16366 507 SHD 509 (568)
Q Consensus 507 sHd 509 (568)
||.
T Consensus 122 s~~ 124 (149)
T 2kjq_A 122 SEY 124 (149)
T ss_dssp ESS
T ss_pred CCC
Confidence 884
No 184
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.23 E-value=5.2e-11 Score=124.74 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHhcCC-------Cc---cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEE
Q psy16366 177 ADAAEPRARRILAGLGF-------TT---IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHL 234 (568)
Q Consensus 177 ~~~~~~~~~~~L~~lg~-------~~---L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L 234 (568)
..+++++++..++..-. .+ |+|||. ++.++++. .+.|||+||||+++ ...||+|++|
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l 357 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLRI 357 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEE
Confidence 35777776655422111 11 889991 55555544 36899999999998 5679999999
Q ss_pred cCCeee
Q psy16366 235 DMKKLF 240 (568)
Q Consensus 235 ~~g~l~ 240 (568)
++|+++
T Consensus 358 ~~G~i~ 363 (365)
T 3qf7_A 358 TGGVVV 363 (365)
T ss_dssp ETTEEC
T ss_pred ECCEEE
Confidence 999986
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=1.5e-11 Score=127.61 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=73.9
Q ss_pred EEEEECCCCChHHHHHHHHhc-CcCCCccEEEECC---------CeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG-ELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 433 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~---------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~ 433 (568)
.+.|+||||+|||||+++|++ ++.|+.|.+.... ...+++++|.....+.... . .......+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~ 109 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----M----GNNDRIVI 109 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC------------CCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----c----CCcchHHH
Confidence 389999999999999999999 7889888875432 2345666654421111110 0 00111123
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchH
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDER 511 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~ 511 (568)
++.+..+.-...... .. .||| +..+|+|+|+|||++ ||..+...|.+.|.+. +.++|++||+..
T Consensus 110 ~~~i~~~~~~~~~~~-~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 110 QELLKEVAQMEQVDF-QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp HHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred HHHHHHHHHhccccc-cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 444433321111111 11 4676 778999999999999 9999999999999986 357999999975
Q ss_pred H
Q psy16366 512 L 512 (568)
Q Consensus 512 ~ 512 (568)
.
T Consensus 176 ~ 176 (354)
T 1sxj_E 176 P 176 (354)
T ss_dssp S
T ss_pred H
Confidence 3
No 186
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.22 E-value=4.9e-11 Score=126.14 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHH--HHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLN--LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk--~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|.+|++++|+||||||||||++ ++.+..+|+.|. ....+-|+.-.. .+...... .+....++..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg----~~~~viyid~E~---~~~~~rl~-~~a~~~gl~~~~--- 242 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG----GEGKCLYIDTEG---TFRPVRLV-SIAQRFGLDPDD--- 242 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSSEEEEEESSS---CCCHHHHH-HHHHHTTCCHHH---
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC----CCCcEEEEeCCC---ccCHHHHH-HHHHHcCCChHh---
Confidence 57899999999999999999999 446777765551 112233443221 11100011 112223333321
Q ss_pred HHHhCCCCCccccCCCCCCCH-hHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHHHH------------HHHHHHH----
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSG-GQKARVALAELT--LNNPDILILDEPTNNLDIESI------------DALAEAI---- 496 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSg-GqkqRv~lA~al--~~~p~lLlLDEPt~~LD~~~~------------~~l~~~l---- 496 (568)
++..+-+ ....+. .+.+.+.-+..+ ..+|+++++||||+.+|.... ..++..|
T Consensus 243 vleni~~--------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la 314 (400)
T 3lda_A 243 ALNNVAY--------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA 314 (400)
T ss_dssp HHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEE--------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 1221111 111222 223333333332 357999999999999996422 3333333
Q ss_pred HhcCceEEEEecch-------------------HHHHhhCceEEEEECC
Q psy16366 497 KNYQGGVILVSHDE-------------------RLIRETDCELWALEKK 526 (568)
Q Consensus 497 ~~~~~tvi~vsHd~-------------------~~i~~~~~~i~~l~~g 526 (568)
++++.|||+|+|.. ..+..+++.+++|+.+
T Consensus 315 ke~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 315 DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 45688999999983 2346678888888765
No 187
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.18 E-value=1.3e-12 Score=135.88 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=50.8
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 122 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~ 122 (568)
.++++++++.|+ +..+++++ |+|.+|+++||+||||||||||+++|+|.. -|..+.+.+++
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~--~~~~g~i~~~G 106 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA--SADIIVLALIG 106 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS--CCSEEEEEEES
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC--CCCEEEEEEec
Confidence 578899999997 77899999 999999999999999999999999999963 23333444444
No 188
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.18 E-value=3.6e-13 Score=130.09 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=35.7
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~ 116 (568)
|+++.+|+++ .+|++++|+||||||||||+++|+|. .|..+.+
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4566788885 89999999999999999999999997 5443443
No 189
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.16 E-value=1.7e-13 Score=131.98 Aligned_cols=138 Identities=18% Similarity=0.095 Sum_probs=83.4
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHH--HhcC----CCHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFN----LPYEK 432 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~--~~~~----~~~~~ 432 (568)
..+|++++|+||||||||||+++|+|+++|+ | ..+|+++++.. .+.. +..+.+. ...+ .....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF--HLDN-RLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG--BCCH-HHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC--cCCH-HHHHHhcccccCCCCchhhHHH
Confidence 3689999999999999999999999999875 4 23567776642 1111 1111110 0001 12222
Q ss_pred HHHHHHhCCCCC----ccccCCCCCCCHhHHHHHHHH-HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEe
Q psy16366 433 SRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVS 507 (568)
Q Consensus 433 ~~~~L~~~~l~~----~~~~~~~~~LSgGqkqRv~lA-~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vs 507 (568)
....+..+.... .... ....+|+||+||++++ ++++.++.++++|||.- ..+..+-..+|+++
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE 155 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence 233333221111 0111 1236899999999998 88888888888888841 11233345789999
Q ss_pred cchHH-HHhhCce
Q psy16366 508 HDERL-IRETDCE 519 (568)
Q Consensus 508 Hd~~~-i~~~~~~ 519 (568)
++.+. +.+.+.|
T Consensus 156 ~~~~~~~~R~~~R 168 (208)
T 3c8u_A 156 VPMADLEARLVQR 168 (208)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 98876 4555544
No 190
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.16 E-value=2e-13 Score=140.42 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=77.6
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc--------CCCccEEEECCCe--------------------------eEEEE---e
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL--------TPNKGELRKSPRL--------------------------RIGKF---D 405 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~--------~p~~G~i~~~~~~--------------------------~i~~~---~ 405 (568)
++++|+|+||||||||||+|.|.. .|+.|+|.++... .++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 479999999999999999999987 7888987543210 11222 2
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCC-HHHH-HH---------------HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNLP-YEKS-RR---------------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~~-~~~~-~~---------------~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
|++. ++.+.++.|.. ++. ...+ +. .+..+++...... . .+||+||+||+..++++
T Consensus 85 q~~~--~~~~~~v~E~~----~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~-~-~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 85 DKGN--IQFDRLVIECT----GMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ-M-NQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHTS--CCCSEEEEEEE----TTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH-H-HHCHHHHHHHHTCSEEE
T ss_pred hcCC--CCCCEEEEeCC----CCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHH-H-hhchHHHHHHHhCCEEE
Confidence 2211 11111111110 110 1110 00 1223344433332 2 37999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecch
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDE 510 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 510 (568)
+.+|+++ ||| ..+.+.|++. +.+|+++||+.
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 9999988 999 4444555443 56899999954
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.15 E-value=1.3e-12 Score=132.69 Aligned_cols=119 Identities=14% Similarity=-0.014 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh---------cC----
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---------FN---- 427 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~---------~~---- 427 (568)
++.+++|+|++|||||||+++|++++.+. |. ....+.+++|+.. +++ .+..+.+... .+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f--~~~-~~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF--YLT-HEDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG--BCC-HHHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc--cCC-hHHHHHHhccccccchhhhccCcch
Confidence 46689999999999999999999998763 21 1223445588863 333 3444443211 01
Q ss_pred CCHHHHHHHHHhCCCC------Cc-cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 428 LPYEKSRRQLGMFGLP------SY-AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 428 ~~~~~~~~~L~~~~l~------~~-~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
.+...+.+.+..+.-. .. ........+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 1234555666665432 10 011123689999999999973333399999999999999985
No 192
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.15 E-value=2e-13 Score=127.80 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=75.0
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECCC---------------eeEE----EEecCCCCCCCCCCCHHH
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSPR---------------LRIG----KFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~---------------~~i~----~~~q~~~~~l~~~~~~~e 420 (568)
++++|+|+||||||||+++|+|+++|+ .|.|..+.. ..+| +++|++. +|......+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~--~~i~~~~~~ 80 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL--AFIRRVSEE 80 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE--EEEEECCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE--EEEecCChh
Confidence 579999999999999999999999998 888864321 1234 5555542 110000000
Q ss_pred HHHHhcCCCHHHHHHHHHh-C-CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE-------EEeCCCC---CCCHHH
Q psy16366 421 YLMKLFNLPYEKSRRQLGM-F-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL-------ILDEPTN---NLDIES 488 (568)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~-~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL-------lLDEPt~---~LD~~~ 488 (568)
. ...+.+++.. + |++. .-...|||||+||++|||+++.+|++. +-|.|.. .+|...
T Consensus 81 ~--------~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~ 148 (171)
T 2f1r_A 81 E--------GNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDE 148 (171)
T ss_dssp H--------HTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTC
T ss_pred h--------hhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCccc
Confidence 0 0023344444 3 3322 223459999999999999999999873 2355532 234445
Q ss_pred HHHHHHHHHh
Q psy16366 489 IDALAEAIKN 498 (568)
Q Consensus 489 ~~~l~~~l~~ 498 (568)
.+.+.++|.+
T Consensus 149 ~~~~a~~i~~ 158 (171)
T 2f1r_A 149 VERIAEFILS 158 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666643
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.14 E-value=8.1e-14 Score=152.03 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=97.4
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEecCCC------------
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQHSG------------ 409 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q~~~------------ 409 (568)
.++++++|.|..|+.++|+|||||||||||++|+|+++|+.|.|..... ..+++..|...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4678999999999999999999999999999999999999999875421 23444444321
Q ss_pred --------CCCCCCCCHHHH---HHHhc-CC------CHHHHHHHHHhC-----CCCCcccc------CCCCCCCHhHHH
Q psy16366 410 --------EHLFPDDTPCEY---LMKLF-NL------PYEKSRRQLGMF-----GLPSYAHT------IPIRDLSGGQKA 460 (568)
Q Consensus 410 --------~~l~~~~~~~e~---l~~~~-~~------~~~~~~~~L~~~-----~l~~~~~~------~~~~~LSgGqkq 460 (568)
..++.+.+..|. +.... +. ....+..++.++ ++...... .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 011112222221 11111 10 001122223332 22211100 123468999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecchHHHHhhCc
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL--VSHDERLIRETDC 518 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~--vsHd~~~i~~~~~ 518 (568)
|++++ ++ | |+|||+.+...+.+.|.++ +.|+++ +||+++.+...|.
T Consensus 408 R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 87764 12 7 9999998766666666554 457775 8999999987764
No 194
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.10 E-value=9.3e-12 Score=133.31 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=52.5
Q ss_pred cceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEec
Q psy16366 58 VDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123 (568)
Q Consensus 58 ~~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~q 123 (568)
..++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|.. -|..+.+.++++
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~--~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT--RADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS--CCSEEEEEEESC
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc--CCCeEEEEEece
Confidence 4678999999997 67899999 999999999999999999999999999963 233445555544
No 195
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.07 E-value=3.1e-11 Score=141.32 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=41.7
Q ss_pred ccceEEee-----eEEEe-CCceeeeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 57 SVDIKVEN-----FSLSA-KGVELFHNANLQIAS-------GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 57 ~~~I~i~n-----ls~~~-~~~~ll~~isl~i~~-------Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...|.++| +++.| ++..+++|++|++.+ |++++|+||||||||||||.| |.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 34699999 99988 667899999999987 999999999999999999999 75
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.06 E-value=2.5e-10 Score=116.10 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=89.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
.+|++++|+|||||||||++..|++.+.++.|. ++.++.+++. ..+..+.+. .+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~a~eqL~-----------~~~~~ 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIAAVEQLK-----------TYAEL 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STTHHHHHH-----------HHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cchHHHHHH-----------HHHHh
Confidence 368999999999999999999999999887782 5677777652 223333332 22334
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-ceEEEE--ecchHH
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q-GGVILV--SHDERL 512 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~v--sHd~~~ 512 (568)
+|++... ..+ +..-+.+|++ +.+|+++|+| |+|+|......+.++..-. . .+++++ ||+...
T Consensus 160 ~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~ 228 (296)
T 2px0_A 160 LQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYED 228 (296)
T ss_dssp TTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHH
T ss_pred cCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHH
Confidence 4544211 122 3345666665 4899999999 8899986554444333221 1 234555 999888
Q ss_pred HHhhCceEEEEECCeEEE
Q psy16366 513 IRETDCELWALEKKNIRK 530 (568)
Q Consensus 513 i~~~~~~i~~l~~g~i~~ 530 (568)
+.++++++..+..+.++.
T Consensus 229 ~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 229 MKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 888877765555666653
No 197
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=1e-13 Score=145.97 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=102.5
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhc------------CcCCCccEEEECC------------CeeE---EEEecCCCCC
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKG------------ELTPNKGELRKSP------------RLRI---GKFDQHSGEH 411 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~------------~~~i---~~~~q~~~~~ 411 (568)
+.+|.+++|+|+||||||||+++|+| .+.|+.|.+.... ...+ .++.+-+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG-- 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG-- 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc--
Confidence 46799999999999999999999999 5678999987653 1222 24444443
Q ss_pred CCCCCCHHH-----HHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEEEeCCCCCC
Q psy16366 412 LFPDDTPCE-----YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNL 484 (568)
Q Consensus 412 l~~~~~~~e-----~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~L 484 (568)
+....+..+ ++......+ .++..+.... ...+..+||+. +| +++++|||+.++
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d-----~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVD-----AIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCS-----EEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHH-----HHHHHHhccc---cceeeeecccc------------CcchhhhhchhhhHHH
Confidence 333333211 111111100 1111122211 12444567653 89 999999999999
Q ss_pred CHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEE-EEECC-eEEEEcCCHHHH
Q psy16366 485 DIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELW-ALEKK-NIRKFNGDFDDY 538 (568)
Q Consensus 485 D~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~-~l~~g-~i~~~~g~~~~~ 538 (568)
|+..+....+.+... +.|| +||+...+..+|+++. +|++| ++. +.+++++-
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~~~~ 211 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI-RKGDWSNR 211 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG-GGSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee-ecCCCCHH
Confidence 999998888888765 3354 3999999999999998 88999 765 33554443
No 198
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.05 E-value=1.1e-11 Score=126.54 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=74.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE---CC----------C-eeEEEEecCCCCC---CCCCCCHHHHH
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---SP----------R-LRIGKFDQHSGEH---LFPDDTPCEYL 422 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~----------~-~~i~~~~q~~~~~---l~~~~~~~e~l 422 (568)
..|++++|+||||||||||+|+|+ +++|+.|+|.. .+ . ..+||++|.|... +++.+|+ +.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 469999999999999999999999 99999999876 21 0 1379999988532 2245565 433
Q ss_pred HH-----------hcC-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 423 MK-----------LFN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 423 ~~-----------~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
.. ..+ .+...+.++|+.++|.......++..|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 111 123457889999999863334467899998899999986
No 199
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.05 E-value=7.5e-13 Score=135.60 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=83.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEE-------------------eCCCEEEEECCCCChHHHHHHHHhcCcC--CCccEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGL-------------------DMESRVALVGPNGIGKSTFLNLLKGELT--PNKGEL 393 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i-------------------~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p~~G~i 393 (568)
+|++++|++.| .+++++++|.+ .+|+++||+||||||||||+++|+|++. |++|.|
T Consensus 37 ~i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 37 DLSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TCCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred ccchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 57889999999 37899999988 8999999999999999999999999998 999998
Q ss_pred EE---CCC-------eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 394 RK---SPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 394 ~~---~~~-------~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
.. +.. ..++++ |... ++...++.+++. .+..+--....-..|....+.+ +|+.
T Consensus 114 ~vi~~d~~~~~~~~~~~~~~v-q~~~--~~~~~~~~~~~~------------~~~~l~~~~~~i~~P~~~~~~~--~~~~ 176 (308)
T 1sq5_A 114 ELITTDGFLHPNQVLKERGLM-KKKG--FPESYDMHRLVK------------FVSDLKSGVPNVTAPVYSHLIY--DVIP 176 (308)
T ss_dssp EEEEGGGGBCCHHHHHHHTCT-TCTT--SGGGBCHHHHHH------------HHHHHTTTCSCEEECCEETTTT--EECT
T ss_pred EEEecCCccCcHHHHHhCCEe-ecCC--CCCCccHHHHHH------------HHHHHhCCCCceeccccccccc--Cccc
Confidence 75 321 113333 3221 223334433322 1211111111011243344443 3443
Q ss_pred HHHHHccCCCeEEEeCCCCCCC
Q psy16366 464 LAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD 485 (568)
.+.+.+..|+++|+|.|....+
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCC
T ss_pred ccceecCCCCEEEECchhhCCC
Confidence 3334556789999999998877
No 200
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.04 E-value=2.3e-10 Score=110.82 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=27.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.|.+|++++|+||||||||||+++|+|..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999953
No 201
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.04 E-value=6.4e-14 Score=134.22 Aligned_cols=138 Identities=21% Similarity=0.192 Sum_probs=74.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcC-------------CCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHH---
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELT-------------PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM--- 423 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-------------p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~--- 423 (568)
.+|++++|+||||||||||+++|+|+++ |..|++ + .+.|.++ +..++-.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~---g~~~~~~----------~~~~~~~~i~ 66 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--D---GKDYYFV----------TREMMQRDIA 66 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--B---TTTBEEC----------CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--C---CceEEEc----------cHHHHHHHHH
Confidence 5799999999999999999999999875 333431 0 0111111 1111100
Q ss_pred ------------HhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHH---HHHH-HHccCCCeEEEeCCCCCCCHH
Q psy16366 424 ------------KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV---ALAE-LTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 424 ------------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv---~lA~-al~~~p~lLlLDEPt~~LD~~ 487 (568)
..++.+...+++++..-... .... .+ .|-+... ..++ +++.+|.+++|||||+++|.+
T Consensus 67 ~~~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~-~~~~----~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 67 AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRIC-VLDV----DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp HTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEEC----CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCCCEeeeeecCccCCCCHHHHHHHHHcCCcE-EEEC----CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 01123445555555431100 0000 00 1111110 1455 678889999999999999998
Q ss_pred HHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 488 ~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
+.+.+.+.|...... +.++|.. ..+|.+++.
T Consensus 141 ~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivn 171 (198)
T 1lvg_A 141 TEESLAKRLAAARTD-MESSKEP----GLFDLVIIN 171 (198)
T ss_dssp CHHHHHHHHHHHHHH-TTGGGST----TTCSEEEEC
T ss_pred CHHHHHHHHHHHHHH-HHHhhcc----CCceEEEEC
Confidence 888888777654222 2345511 456776544
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.03 E-value=1.5e-13 Score=142.27 Aligned_cols=158 Identities=22% Similarity=0.245 Sum_probs=101.2
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCC-------CEEEEECCCCChHHHHHHHHhcCc----CCCccEEEEC---------
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDME-------SRVALVGPNGIGKSTFLNLLKGEL----TPNKGELRKS--------- 396 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~G-------e~~~ivG~NGsGKSTLlk~l~G~~----~p~~G~i~~~--------- 396 (568)
+.++++..| ++..+++++++.|..| +.++|+||||+|||||+++|+|.+ .|++|.+...
T Consensus 20 r~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 20 RPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344566667 6677899999999877 899999999999999999999998 6777765421
Q ss_pred --CCeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--------CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 397 --PRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 397 --~~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
....|.+++|.+. ++. ++.+.+... ... ....+...+..++|.. .. .++..||+|++||+.
T Consensus 99 ~~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at-~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-AT-TRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EE-SCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ec-CCcccCCHHHHHhcC
Confidence 2346888888642 432 455554321 111 1122334455666654 33 356899999999986
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCc
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 518 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~ 518 (568)
++ .+||+.+.+.+.++|.+.... .-++|+.+.+..++.
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAK 210 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHH
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHH
Confidence 54 667777777777766543110 113688777666554
No 203
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.03 E-value=1.8e-10 Score=116.72 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=43.5
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC-CceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~-~~~i~~~~qe~ 125 (568)
|.+.|+++++.|.+|+.++|+||||||||||++.|+|... |. +..+.++..+.
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE 74 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC
Confidence 4467999999999999999999999999999999999632 23 33677777664
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.02 E-value=2.1e-10 Score=117.09 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=71.7
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHH
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~ 434 (568)
++|...+|++++|+|||||||||++..|++.+.+..|+|. ++..+. +. .... +...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~--------lv~~D~----~r-~~a~-----------eqL~ 152 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV--------LAAADT----FR-AAAI-----------EQLK 152 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE--------EEEECT----TC-HHHH-----------HHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE--------EEcccc----cc-HHHH-----------HHHH
Confidence 3445678999999999999999999999999998776653 333332 10 0111 1233
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHH---HHHHHHccCCCeEEEeCCCC
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARV---ALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv---~lA~al~~~p~lLlLDEPt~ 482 (568)
.++..++++- +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 153 ~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 153 IWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 4555666642 235789999999 89999999999999999985
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.01 E-value=4.3e-12 Score=117.12 Aligned_cols=49 Identities=24% Similarity=0.020 Sum_probs=43.6
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..++++++|+++.+++++||+|.+|++++|+||||||||||+|+|+|..
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445677787788999999999999999999999999999999999964
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.01 E-value=2.1e-12 Score=133.45 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=37.8
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~ 120 (568)
+++++||++.+|+.++|+||||||||||+++|+|... |..+.+.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i 204 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISI 204 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEE
Confidence 7899999999999999999999999999999999632 33444444
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.99 E-value=2.5e-10 Score=110.47 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=41.9
Q ss_pred CceeeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANL-QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl-~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|.+.|+++.. .|.+|+.++|+||||||||||++.|++... +.+..+.++..+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE 61 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc
Confidence 4456788887 899999999999999999999999997532 3445677766543
No 208
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.97 E-value=5.7e-10 Score=129.17 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=39.6
Q ss_pred ceEEeeeEEEe-----CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 59 DIKVENFSLSA-----KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 59 ~I~i~nls~~~-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
.|.+++....+ ++..+++|++|++.+|++++|+||||||||||||+|+
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46666655443 2456899999999999999999999999999999993
No 209
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.93 E-value=3.9e-10 Score=121.46 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=42.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 579999999999 999999999999999999999999999999864
No 210
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.92 E-value=9.8e-10 Score=103.26 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.6
Q ss_pred cCCC--c---------hHHHHHHhccCCeEEEEe---CCHHHHHhhhce
Q psy16366 196 IYIP--S---------SRVHEIMRTWKKTLLVVS---HDQSFLNNICTD 230 (568)
Q Consensus 196 L~~e--P---------n~L~~~l~~~~~tvlvVS---Hd~~~l~~v~d~ 230 (568)
++|| | +++.+++.+.+.|+|+++ ||++++..+|++
T Consensus 104 ilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 104 IIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp EECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred EEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 8899 8 267788888778788888 599999999998
No 211
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.88 E-value=3.1e-11 Score=122.88 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=46.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|+++|++|+|+ .++|+++||+|.+|++++||||||||||||+++|+|.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 588999999997 7899999999999999999999999999999999985
No 212
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.88 E-value=5e-13 Score=134.62 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=80.9
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEecCCCCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~l~~~~ 416 (568)
...+|++++|.+.+| ++|+||||||||||+++|+|.+.+ |.+..... ..+++++|... ...+..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCe
Confidence 346789999999999 999999999999999999999876 45543321 01222222110 000000
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC------------CC
Q psy16366 417 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN------------NL 484 (568)
Q Consensus 417 ~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~------------~L 484 (568)
++.+.+.... ....... .. .+.... ...+..|||||+||+.|++++..+|++| |||+. -.
T Consensus 107 ~~~Deid~~~--~~r~~~~-~~--~~~~~~-~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 107 IFFDEVDALC--PRRSDRE-TG--ASVRVV-NQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEEETCTTTC--C------------CTTHH-HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred Eeeehhhhhh--cccCCCc-ch--HHHHHH-HHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 0000000000 0000000 00 011111 1245689999999999999999999985 99864 34
Q ss_pred CHHHHHHHHHHHHh
Q psy16366 485 DIESIDALAEAIKN 498 (568)
Q Consensus 485 D~~~~~~l~~~l~~ 498 (568)
|...+..+++.+.+
T Consensus 179 ~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 179 PPADRLAILKTITK 192 (274)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 66777777776653
No 213
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.87 E-value=1.6e-08 Score=98.69 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=83.2
Q ss_pred eeeee-eEEEeCCCEEEEECCCCChHHHHHHHH-hcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH--hc
Q psy16366 351 LLEKV-NFGLDMESRVALVGPNGIGKSTFLNLL-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK--LF 426 (568)
Q Consensus 351 il~~v-s~~i~~Ge~~~ivG~NGsGKSTLlk~l-~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~--~~ 426 (568)
.|+.+ .-.|.+|++++|+||||||||||+..+ .+..++ .+. +.|+.-+ .+..+.... ..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~--------v~~~~~e--------~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEP--------GIYVALE--------EHPVQVRQNMAQF 73 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCC--------EEEEESS--------SCHHHHHHHHHTT
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCe--------EEEEEcc--------CCHHHHHHHHHHc
Confidence 45555 567899999999999999999996544 444433 222 3344322 122222111 12
Q ss_pred CCCHHHHHH--HHH-------hCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCC--CHHH----H
Q psy16366 427 NLPYEKSRR--QLG-------MFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNL--DIES----I 489 (568)
Q Consensus 427 ~~~~~~~~~--~L~-------~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~L--D~~~----~ 489 (568)
+...+.... .+. .++....... ....-+....+.+..++.++ .+|+++++|+|+..+ |+.. .
T Consensus 74 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 74 GWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK-YIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp TCCCHHHHHHTSEEEEECSTTTTCC--CCCS-CBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred CCCHHHHhhCCcEEEEecchhhccccccccc-ccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 333222111 000 0110000000 00011112222223333332 579999999999988 5422 2
Q ss_pred HHHHHHHHhcCceEEEEecchHH--------HHhhCceEEEEEC
Q psy16366 490 DALAEAIKNYQGGVILVSHDERL--------IRETDCELWALEK 525 (568)
Q Consensus 490 ~~l~~~l~~~~~tvi~vsHd~~~--------i~~~~~~i~~l~~ 525 (568)
..|.+.+++.+.|||+++|.... +..+||.++.++.
T Consensus 153 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 153 LQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 34455556778899999998775 4577899988863
No 214
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.87 E-value=2.6e-09 Score=115.04 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=102.7
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH----h
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----L 425 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~----~ 425 (568)
+.|+++...+.+|+.+.|.|++|+|||||+..|++...+..|. .+.|+.-+ ++..+...+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E--------~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLE--------MSAQQLVMRMLCAE 255 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESS--------SCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECC--------CCHHHHHHHHHHHH
Confidence 4688888889999999999999999999999999877654442 34555432 222222111 1
Q ss_pred cCC----------CHHH---HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCCCH----
Q psy16366 426 FNL----------PYEK---SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI---- 486 (568)
Q Consensus 426 ~~~----------~~~~---~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~LD~---- 486 (568)
.+. .... +...++.++....... ....+|.++.+ +.++.+. .+|+++|+|+|+...+.
T Consensus 256 ~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 122 2221 2223333333222222 23579999987 4455554 68999999999998742
Q ss_pred ----HHHHHHHHHHH----hcCceEEEEec---------c--hH--------HHHhhCceEEEEECCeE
Q psy16366 487 ----ESIDALAEAIK----NYQGGVILVSH---------D--ER--------LIRETDCELWALEKKNI 528 (568)
Q Consensus 487 ----~~~~~l~~~l~----~~~~tvi~vsH---------d--~~--------~i~~~~~~i~~l~~g~i 528 (568)
..+..+...|+ +++.+||+++| | +. .+...||.+++|..+..
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23344444443 56789999999 3 22 46778999999986654
No 215
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=5.5e-11 Score=121.27 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=62.3
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE---CCC-----------eeEEEEecCCCC-------------
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---SPR-----------LRIGKFDQHSGE------------- 410 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~-----------~~i~~~~q~~~~------------- 410 (568)
++..|++++|+||||||||||||+|+|+.+|+.|+|.. .++ ..+||++|.|..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 34569999999999999999999999999999999875 210 147899998752
Q ss_pred -CCCCCCCHHHHHHHh-c---CCCHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 411 -HLFPDDTPCEYLMKL-F---NLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 411 -~l~~~~~~~e~l~~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
.++++.++ +++... . ......+.++|+.++|+.....+.+..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 24556655 433211 0 112345788999999963333335567774
No 216
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.83 E-value=1.3e-09 Score=111.09 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=40.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+..+||++.+|++++||||||||||||++.|+|... |.++.+.+.+.++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDT 138 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecc
Confidence 457889999999999999999999999999999643 4456777766554
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=2.3e-10 Score=116.67 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE---CC-------C-ee--EEEEecCCCCCCCC--CCCHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---SP-------R-LR--IGKFDQHSGEHLFP--DDTPCEYLM 423 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~-------~-~~--i~~~~q~~~~~l~~--~~~~~e~l~ 423 (568)
+.+|++++|+||||||||||+|+|+|+..|..|+|.. .+ . .. +||++|.|....+. ..++ +.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 3479999999999999999999999999999999875 11 0 11 68999998633322 4566 5442
Q ss_pred H-------h------cC-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 424 K-------L------FN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 424 ~-------~------~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
. . .+ .+...+.++++.++|...... ....|+.|++|
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~ 302 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKD 302 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhh
Confidence 1 1 01 122457888999999764333 23467777776
No 218
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.78 E-value=1.7e-09 Score=123.65 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=40.5
Q ss_pred ceEEeeeEEEe-----CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 59 DIKVENFSLSA-----KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 59 ~I~i~nls~~~-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+++..-.. +++.+++|++|+ .+|++++|+||||||||||||+|+|.
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 46666544321 456799999999 99999999999999999999999984
No 219
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.76 E-value=2.5e-09 Score=123.49 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=40.9
Q ss_pred ceEEeeeEEEe-------CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 59 DIKVENFSLSA-------KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 59 ~I~i~nls~~~-------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|.+++..-.. ++..+++|++|++.+|++++|+||||||||||||+|++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 46666654432 34678999999999999999999999999999999985
No 220
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.75 E-value=2.4e-09 Score=103.77 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=24.5
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..|+|+||+|.+|++++|+||||||||||+++|+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999999999999999995
No 221
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.75 E-value=1.6e-08 Score=103.86 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHhc------CCCc--cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhcee--eEEc
Q psy16366 177 ADAAEPRARRILAGL------GFTT--IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDI--IHLD 235 (568)
Q Consensus 177 ~~~~~~~~~~~L~~l------g~~~--L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~i--i~L~ 235 (568)
..+.+++.+..++.. .-.. |+|||. +|.++++.+ +.|+|+|||+.+ +..+||++ +.|.
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~ 297 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMV 297 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEES
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEe
Confidence 346667666555432 2122 789991 555555554 679999999965 55689987 8899
Q ss_pred CCeeeEEcCChh
Q psy16366 236 MKKLFYYKGNFT 247 (568)
Q Consensus 236 ~g~l~~~~g~y~ 247 (568)
+|.......+.+
T Consensus 298 ~g~s~~~~~~~~ 309 (322)
T 1e69_A 298 NGVSAIVPVEVE 309 (322)
T ss_dssp SSCEEEEECCC-
T ss_pred CCEEEEEEEEcc
Confidence 987766555444
No 222
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.74 E-value=2.9e-09 Score=104.95 Aligned_cols=40 Identities=20% Similarity=0.082 Sum_probs=25.3
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++.+|+|+||++.+|+++||+||||||||||+++|+|.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999984
No 223
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.70 E-value=3.4e-09 Score=103.31 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=23.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh-cCcCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GELTP 388 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~-G~~~p 388 (568)
....++||++.+|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
No 224
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.68 E-value=3.1e-10 Score=123.04 Aligned_cols=166 Identities=12% Similarity=0.095 Sum_probs=93.5
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHhc--CcCCCccEEEE---CCCeeEEEEecCCC--CCCC--CCCCHHHHHH-
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRK---SPRLRIGKFDQHSG--EHLF--PDDTPCEYLM- 423 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~---~~~~~i~~~~q~~~--~~l~--~~~~~~e~l~- 423 (568)
.+++.+.++.++.|.|++||||||+++.|.. +..++.|++.. +.+. .. ++... .++. .-..+.+...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~e--l~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LE--LSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SG--GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hh--hhhhccCCcccceeecCHHHHHHH
Confidence 4678888999999999999999999999876 44555565542 1111 00 11110 0111 0112222111
Q ss_pred -HhcCCCHHHHHHHHHhCCCCCccccC--CCCCCCHhHHHHH----------HHHHHHccCCC-eEEEeCCCCCCCHHH-
Q psy16366 424 -KLFNLPYEKSRRQLGMFGLPSYAHTI--PIRDLSGGQKARV----------ALAELTLNNPD-ILILDEPTNNLDIES- 488 (568)
Q Consensus 424 -~~~~~~~~~~~~~L~~~~l~~~~~~~--~~~~LSgGqkqRv----------~lA~al~~~p~-lLlLDEPt~~LD~~~- 488 (568)
.......++-.+.|..+|+....... ....+|+||+|+. .+++++...|. ++++||++..+|...
T Consensus 236 L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~ 315 (512)
T 2ius_A 236 LRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGK 315 (512)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhH
Confidence 11000011122567777876532210 1135788887652 35566777898 899999999888422
Q ss_pred -HHHHHHHH----HhcCceEEEEecchH-------HHHhhCceEEE
Q psy16366 489 -IDALAEAI----KNYQGGVILVSHDER-------LIRETDCELWA 522 (568)
Q Consensus 489 -~~~l~~~l----~~~~~tvi~vsHd~~-------~i~~~~~~i~~ 522 (568)
...++..| +.++.++|++||+.. +...+.+||.+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 22222222 234668999999987 45566666654
No 225
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.68 E-value=8.2e-09 Score=107.42 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=39.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 76 ~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..+||++.+|++++||||||||||||++.|+|... |.++.+.+.+.++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~ 195 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDT 195 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccc
Confidence 46788999999999999999999999999999642 4456777766554
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.67 E-value=4.8e-08 Score=93.62 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=36.6
Q ss_pred eeeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNANL-QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~isl-~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.|+.+.. .|.+|+.++|+||||||||||++.|++ +.+..+.|+..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCC
Confidence 34555544 588999999999999999999999998 2344666766543
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.66 E-value=2.8e-09 Score=110.98 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=37.0
Q ss_pred eeeeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNANL-------QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~isl-------~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.|+++.+ .+.+|+.++|+|||||||||||++|+|...+ ..+..+..++..+
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPI 162 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEEEEEESSC
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCcEEEEccCcH
Confidence 45555554 6788899999999999999999999995322 1234555555443
No 228
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.65 E-value=4.2e-08 Score=101.54 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=25.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.+..+.+.+| ..+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556666655 88999999999999999985
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.64 E-value=1.1e-07 Score=98.83 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=80.7
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.|.+|+++.|.||||||||||+..++.......| .+.|+.-+.. + .. .. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~--------~vlyi~~E~~--~----~~--~~--------------a 106 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--------IAAFIDAEHA--L----DP--EY--------------A 106 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CEEEEESSCC--C----CH--HH--------------H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC--------eEEEEECCCC--c----CH--HH--------------H
Confidence 5789999999999999999998888765543333 3455554321 1 11 11 1
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC--CCeEEEeCCCCCC----------CH----H---HH---HHHHHH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNL----------DI----E---SI---DALAEA 495 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~--p~lLlLDEPt~~L----------D~----~---~~---~~l~~~ 495 (568)
..+|+...... .....+.. +-+.++++++.. |+++|+|||++.+ |. . .. ..|...
T Consensus 107 ~~lG~~~~~l~-i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~ 183 (349)
T 2zr9_A 107 KKLGVDTDSLL-VSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 (349)
T ss_dssp HHTTCCGGGCE-EECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHeE-EecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHH
Confidence 22333211000 01112333 345677777654 9999999999998 32 1 11 222333
Q ss_pred HHhcCceEEEEecchH----------------HHHhhCceEEEEECC
Q psy16366 496 IKNYQGGVILVSHDER----------------LIRETDCELWALEKK 526 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~----------------~i~~~~~~i~~l~~g 526 (568)
+++++.+||+++|-.. .+..+|+.++.+..+
T Consensus 184 a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 184 LNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp HHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEE
T ss_pred HHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEe
Confidence 4677899999999654 255678877777654
No 230
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.63 E-value=2.3e-09 Score=119.53 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=95.7
Q ss_pred EEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-cEEEEC------CCeeEEEEecCCCCCC--
Q psy16366 342 TFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-GELRKS------PRLRIGKFDQHSGEHL-- 412 (568)
Q Consensus 342 ~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~------~~~~i~~~~q~~~~~l-- 412 (568)
+.-| +...+++++++.+..|+.++|+||||+|||||+++|++++++.. |.+... ....++++++.....+
T Consensus 41 ~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e 119 (604)
T 3k1j_A 41 DQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119 (604)
T ss_dssp HHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHH
T ss_pred ceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHH
Confidence 3345 67789999999999999999999999999999999999999887 544431 1234555554321000
Q ss_pred ------------------CCCCCHHHHHHH-hc---CC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 413 ------------------FPDDTPCEYLMK-LF---NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 413 ------------------~~~~~~~e~l~~-~~---~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
+...+..+++.. .. +. .......+++.+.. ... ..+.+|+|++|++..+
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~---~~~-~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH---DPF-QSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC---CCC-----CCCCGGGGEECC
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe---chh-hcCCccccccccccCc
Confidence 000000000000 00 00 00011122222211 111 2357999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
++...++.+|+|||... |++.....|.+.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999999974
No 231
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.63 E-value=1.4e-08 Score=95.72 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 460 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 460 qRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
+.+.+|++++.+|+++++| ||++|..++..+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3477899999999999999 999999999999888754
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.63 E-value=2.3e-09 Score=113.62 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=40.6
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCC
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRR--YGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~--~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
...+++.+ ++.|++.+ |+++||+|.+|++ +|||||||||||||+++|+|..
T Consensus 14 ~~~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 14 CRTVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp ---CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CceEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34566677 88888888 9999999999999 9999999999999999999964
No 233
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.62 E-value=9.5e-10 Score=107.34 Aligned_cols=53 Identities=30% Similarity=0.300 Sum_probs=42.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 396 (568)
.|+++|++..| +. +|+|.+ ++++|+|||||||||||++|+|++.|++|.|.++
T Consensus 9 ~l~l~~~~~~~-~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~ 61 (227)
T 1qhl_A 9 SLTLINWNGFF-AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (227)
T ss_dssp EEEEEEETTEE-EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---
T ss_pred EEEEEeeeccc-CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEEC
Confidence 57888887655 21 456666 8999999999999999999999999999987643
No 234
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.60 E-value=1.3e-09 Score=111.64 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=54.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQ-----------------------IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~-----------------------i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~ 115 (568)
.|+++|+++.|. ++++++++. +.+|+++||+||||||||||+++|+|...+.++.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 588999999984 677777764 8899999999999999999999999964443333
Q ss_pred ceEEEEeccccCCc
Q psy16366 116 IDLLYCEQEVEASD 129 (568)
Q Consensus 116 ~~i~~~~qe~~~~~ 129 (568)
..+.++.|+....+
T Consensus 121 ~~v~~v~qd~~~~~ 134 (312)
T 3aez_A 121 PRVDLVTTDGFLYP 134 (312)
T ss_dssp CCEEEEEGGGGBCC
T ss_pred CeEEEEecCccCCc
Confidence 45778888764433
No 235
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.60 E-value=2.7e-09 Score=105.73 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCeEEEEee-EEEeCCCceeeeeeeEEEeC---CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 333 PPVLGLHDV-TFGYPGGKVLLEKVNFGLDM---ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 333 ~~~l~~~~v-~~~y~~~~~il~~vs~~i~~---Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++|+++|+ +++|.++.++|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 99994456799999999999 9999999999999999999999865
No 236
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=1.2e-10 Score=122.26 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=80.0
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE-CC---C--eeEEEEecCCCCCCCCCCCHHHHHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-SP---R--LRIGKFDQHSGEHLFPDDTPCEYLM 423 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-~~---~--~~i~~~~q~~~~~l~~~~~~~e~l~ 423 (568)
.+|+++++++.+|++++|+||||||||||+++|+|.. .|.+.. .. + ..+|+++|.+. .++.+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~-~l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFL-VVFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSC-EEETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhH-HHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999853 677654 21 1 13555555542 1111111111000
Q ss_pred H-hcCCCH----HHHHHHHH---------------hCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE-EeCCCC
Q psy16366 424 K-LFNLPY----EKSRRQLG---------------MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI-LDEPTN 482 (568)
Q Consensus 424 ~-~~~~~~----~~~~~~L~---------------~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl-LDEPt~ 482 (568)
+ ...... ..+...+. ..-+....-......+++|+++|++.+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0 000000 11223332 11111111122467899999999999888899999988 999987
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.58 E-value=5.9e-12 Score=126.69 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEe
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFD 405 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~ 405 (568)
+++++.+.| +...++++++|.+.+| ++|+||||||||||+++|++.+. .|.+..... ..+++++
T Consensus 51 ~l~~l~~~~-~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHH-HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 455666667 4567899999999999 99999999999999999999875 566654310 1233344
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCC-------CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNL-------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~-------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|... ...+..++.+.+...... ........+.. .+..|||||+||+.+++++..+|++ ||
T Consensus 126 ~~~~-~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHH-TSCSEEEEEETHHHHHCC--------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHH-hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 4321 111222222211110000 00111112211 1346899999999999999999987 56
Q ss_pred CCC
Q psy16366 479 EPT 481 (568)
Q Consensus 479 EPt 481 (568)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 553
No 238
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.57 E-value=6.2e-08 Score=100.96 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=77.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEE-ECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l 442 (568)
.++|+|+||+|||||++.|+|.. +..|... ......++.+.+... .+..++.
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~--------------------------~~~l~Dt 221 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF--------------------------RYQIIDT 221 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE--------------------------EEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc--------------------------eEEEEeC
Confidence 69999999999999999999975 2212110 011122333322110 0111222
Q ss_pred CCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cchH
Q psy16366 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD-EPTNNLDIESIDALAEAIKN-Y-QGGVILVS--HDER 511 (568)
Q Consensus 443 ~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tvi~vs--Hd~~ 511 (568)
++... .++..+|+|+++++. +.+...++-++++| +|++++|......+...+.. . +..+|+|. ||+.
T Consensus 222 ~G~~~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 222 PGLLD-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTTSS-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CCccc-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 33333 256789999998776 55555677789999 99999999987777766654 3 56788888 8874
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.57 E-value=1.9e-07 Score=90.89 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=33.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC----CCceEEEEeccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIP----SSIDLLYCEQEV 125 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip----~~~~i~~~~qe~ 125 (568)
-|.+|+.++|+||||||||||++.|++....-| ....+.|+..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 478999999999999999999999998422111 134556665543
No 240
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.56 E-value=3.3e-09 Score=105.08 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=35.7
Q ss_pred cceEEeee-EEEe-CCceeeeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 58 VDIKVENF-SLSA-KGVELFHNANLQIAS---GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 58 ~~I~i~nl-s~~~-~~~~ll~~isl~i~~---Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..|+++|+ +++| ++..+|+++||+|.+ |++++|+|++||||||++++|++.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999 9999 778899999999999 999999999999999999999974
No 241
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.54 E-value=6.6e-08 Score=90.22 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=69.7
Q ss_pred ee--eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE----------E-------CCCeeEEEEecCCCCC
Q psy16366 351 LL--EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------K-------SPRLRIGKFDQHSGEH 411 (568)
Q Consensus 351 il--~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~----------~-------~~~~~i~~~~q~~~~~ 411 (568)
.+ ++++|.+.+| +++|+||||||||||+++|.+++.+..|... . .....|.+++|++...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 46 7889999999 9999999999999999999998887765321 1 1345788889887544
Q ss_pred CCCC---CCHHHHHH----H-----hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 412 LFPD---DTPCEYLM----K-----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 412 l~~~---~~~~e~l~----~-----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
+.+. .++...+. . ........+.+++..+++..... .-++.||.++++
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~----~~~~qg~~~~l~ 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY----NIVLQGDITKFI 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT----TEECTTCTTHHH
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC----EEEEcccHHHHH
Confidence 3321 11110000 0 00124567788899898875321 235666665554
No 242
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.51 E-value=3.8e-08 Score=105.98 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=54.9
Q ss_pred CCCCCCHhHHHHH--HHHHHHcc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHH
Q psy16366 450 PIRDLSGGQKARV--ALAELTLN---------------NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 512 (568)
Q Consensus 450 ~~~~LSgGqkqRv--~lA~al~~---------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 512 (568)
..+.+||||+|-. +|+.++++ .-.+++|||. +-+|.+.+...++++++++--+|++|=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 4689999999963 33333332 2257999999 9999999999999999999999999988 5
Q ss_pred HHhhCceEEEE
Q psy16366 513 IRETDCELWAL 523 (568)
Q Consensus 513 i~~~~~~i~~l 523 (568)
+..+++.++.+
T Consensus 453 i~p~v~~~~~~ 463 (483)
T 3euj_A 453 ISPERGTTYKL 463 (483)
T ss_dssp CCCSSSEEEEC
T ss_pred hhhccCceEEE
Confidence 55555665543
No 243
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.48 E-value=2.2e-09 Score=111.17 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=54.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.|++++++++|++..+|+++||++.+|++++|+|+||||||||+++|+|.. .|.++.+.+.+.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~--~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL--TAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh--hhCCCEEEEEEEcC
Confidence 467788888887788999999999999999999999999999999999853 23455666666554
No 244
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.48 E-value=7.1e-09 Score=103.40 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=45.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC-CceEEEEeccc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEV 125 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~-~~~i~~~~qe~ 125 (568)
+.+++++++ ++|+++| +.+|+.++|+||||||||||+++|+|... |. .+.+.+.+.++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI 64 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc
Confidence 456666654 5899999 89999999999999999999999999532 32 56776766554
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.48 E-value=4.2e-08 Score=93.14 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=26.7
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999864
No 246
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.47 E-value=3.8e-09 Score=107.93 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQI-------------------ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i-------------------~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~ 119 (568)
.|+++|+++.| .+++++++|.+ .+|+++||+|+||||||||+++|+|.....|..+.+.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 57889999998 47999999988 8999999999999999999999999532114455565
Q ss_pred EEec
Q psy16366 120 YCEQ 123 (568)
Q Consensus 120 ~~~q 123 (568)
++..
T Consensus 115 vi~~ 118 (308)
T 1sq5_A 115 LITT 118 (308)
T ss_dssp EEEG
T ss_pred EEec
Confidence 5443
No 247
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.46 E-value=4.4e-08 Score=95.40 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=22.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH-cC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-TR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La-G~ 108 (568)
.-..++||++.+|+++||+||||||||||+++|+ |.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3577899999999999999999999999999999 86
No 248
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.43 E-value=1.1e-07 Score=90.67 Aligned_cols=125 Identities=18% Similarity=0.113 Sum_probs=73.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~ 443 (568)
+++|+|+|||||||+.++|+++ |... +..+. ............+..+...+|..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~---------id~d~------------~~~~~~~~~~~~~~~i~~~~g~~ 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPL---------VDADV------------VAREVVAKDSPLLSKIVEHFGAQ 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCE---------EEHHH------------HHHHTTCSSCHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcc---------cchHH------------HHHHHccCChHHHHHHHHHhCHH
Confidence 6899999999999999999983 3211 11110 00000000112233445555542
Q ss_pred CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecchHHH--HhhCceE
Q psy16366 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDERLI--RETDCEL 520 (568)
Q Consensus 444 ~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~i--~~~~~~i 520 (568)
. -.|.|+.+|..++..+..+|..+..+ ++.+++.....+.+.+... +.+||+.+|.+... ...|+.+
T Consensus 58 ~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 58 I--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp C--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEE
T ss_pred H--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEE
Confidence 1 14678999999999888888654333 3445666666666667654 45788888987554 5678888
Q ss_pred EEEE
Q psy16366 521 WALE 524 (568)
Q Consensus 521 ~~l~ 524 (568)
|++.
T Consensus 128 i~l~ 131 (206)
T 1jjv_A 128 LVVD 131 (206)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=8.7e-08 Score=90.96 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=25.2
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|+++.+|++++|+||||||||||+++|+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 577889999999999999999999999995
No 250
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.42 E-value=1.7e-07 Score=101.17 Aligned_cols=113 Identities=17% Similarity=0.221 Sum_probs=71.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
..++++++.+++| +.|+||+|+|||||+++|++.... .+-++.-. .+.. .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is~~---~~~~-~------------- 88 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHISGS---DFVE-L------------- 88 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEEGG---GTTT-C-------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCCHH---HHHH-H-------------
Confidence 3455666666666 889999999999999999985421 01111100 0000 0
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC----------CCCCCHHHHHHHHHHHHhc
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP----------TNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~~ 499 (568)
.. =+|+++.|..+++|....|.||++||+ +++.|.+....+.+++..+
T Consensus 89 --------------------~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l 146 (476)
T 2ce7_A 89 --------------------FV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146 (476)
T ss_dssp --------------------CT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred --------------------Hh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence 00 126788899999999999999999999 3466766555555555432
Q ss_pred -------CceEEEEecchHHHH
Q psy16366 500 -------QGGVILVSHDERLIR 514 (568)
Q Consensus 500 -------~~tvi~vsHd~~~i~ 514 (568)
+..||.+||+.+.+.
T Consensus 147 d~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 147 DGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHSCGGGTEEEEEEESCGGGSC
T ss_pred hccCCCCCEEEEEecCChhhhc
Confidence 346888999986653
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.42 E-value=3.8e-08 Score=113.18 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=29.6
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++.+.++..++|+||+|+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999999764
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.41 E-value=2.9e-07 Score=92.27 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+|+.++|+||||||||||++.|++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999999973
No 253
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=9e-08 Score=101.61 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=39.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ 111 (568)
.|.++|++++|+++.++++++|+| +|||+||||||||+++|+|...+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCC
Confidence 588999999999999999999998 99999999999999999997543
No 254
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.40 E-value=2.1e-08 Score=95.44 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=35.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.|+++|++++|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999996 467777 899999999999999999999999999964
No 255
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.37 E-value=1.3e-07 Score=89.57 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
...|++++.+|+++++| ||++|...+..+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45688999999999999 999999998888877754
No 256
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.37 E-value=8.2e-09 Score=115.05 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=30.3
Q ss_pred cceEEeeeEEEeCC--ceeeeeee----------EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 58 VDIKVENFSLSAKG--VELFHNAN----------LQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~is----------l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..+.++|++..|++ +++|+.++ |++.. +||||||||||||||++|+|..
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC
Confidence 35788999999965 34665553 66664 9999999999999999999973
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.34 E-value=2.5e-08 Score=104.13 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=40.2
Q ss_pred EEeeeEEE---eCC--ceee---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLS---AKG--VELF---------HNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~---~~~--~~ll---------~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++++|+ |++ .++| +++||+|.+|+.++|+||||||||||+++|+|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45566666 542 3455 999999999999999999999999999999996
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.33 E-value=1.3e-07 Score=88.88 Aligned_cols=30 Identities=37% Similarity=0.587 Sum_probs=26.6
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 578999999999999999999999975444
No 259
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.33 E-value=2.8e-07 Score=105.38 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=86.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 438 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~ 438 (568)
+..|+.+.|+|||||||||++.++++...+..|. ...+.++ + |...+. ....+.+....+... ..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~-----g~~ilvl-~-P~r~La--~q~~~~l~~~~~~~v------~~ 170 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE-----NTQVACT-Q-PRRVAA--MSVAQRVAEEMDVKL------GE 170 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG-----TCEEEEE-E-SCHHHH--HHHHHHHHHHTTCCB------TT
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC-----CceEEec-C-chHHHH--HHHHHHHHHHhCCch------hh
Confidence 4578999999999999999999887765544420 1122222 1 100000 000011111011000 00
Q ss_pred hCC----CCC-ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEE-Eec
Q psy16366 439 MFG----LPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNY---QGGVIL-VSH 508 (568)
Q Consensus 439 ~~~----l~~-~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~-vsH 508 (568)
.+| +.. ......+..+|+|+.+|..+++.++.++++||+|||.. +||......+...+... ..+|++ +||
T Consensus 171 ~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 171 EVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp TEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred eecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 011 000 00112456789999999999999999999999999996 99987766666555443 235666 499
Q ss_pred chHHHHhhCce
Q psy16366 509 DERLIRETDCE 519 (568)
Q Consensus 509 d~~~i~~~~~~ 519 (568)
|.+.+..+.+.
T Consensus 251 ~~~~l~~~~~~ 261 (773)
T 2xau_A 251 DAEKFQRYFND 261 (773)
T ss_dssp CCHHHHHHTTS
T ss_pred cHHHHHHHhcC
Confidence 98877776653
No 260
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.29 E-value=3.5e-06 Score=87.59 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=76.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~ 443 (568)
.+.|.||+|+|||||++.+++.+.+..+ ..+.++.-.. ..+.... ...++..++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~------~~~~~~~-----------~~~l~~~l~~~ 101 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFI------YRNFTAI-----------IGEIARSLNIP 101 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTT------CCSHHHH-----------HHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCcc------CCCHHHH-----------HHHHHHHhCcc
Confidence 7999999999999999999998876431 1233333211 1222222 22333444432
Q ss_pred CccccCCCCCCCHhHHHHHHHHHHH-ccCCCeEEEeCCCCCCCHHHHHHHHHHHHh------cCceEEEEecchHHHHhh
Q psy16366 444 SYAHTIPIRDLSGGQKARVALAELT-LNNPDILILDEPTNNLDIESIDALAEAIKN------YQGGVILVSHDERLIRET 516 (568)
Q Consensus 444 ~~~~~~~~~~LSgGqkqRv~lA~al-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tvi~vsHd~~~i~~~ 516 (568)
. +....+.++.......... ...|.+|++||+... |......|...+.+ .+.++|++||+..+...+
T Consensus 102 ~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 102 F-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp C-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred C-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 1 2223444443332221111 245889999999876 99888888888854 355799999998766554
Q ss_pred C
Q psy16366 517 D 517 (568)
Q Consensus 517 ~ 517 (568)
.
T Consensus 176 ~ 176 (389)
T 1fnn_A 176 D 176 (389)
T ss_dssp C
T ss_pred C
Confidence 3
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.29 E-value=1.6e-06 Score=91.54 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=31.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHH--cCCcccC--CCceEEEEeccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIA--TRALAIP--SSIDLLYCEQEV 125 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~La--G~~~~ip--~~~~i~~~~qe~ 125 (568)
-|.+|++++|+||||||||||++.|+ +...+.. ....+.|+..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 68899999999999999999999664 4211100 134566666554
No 262
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.28 E-value=4.7e-07 Score=84.37 Aligned_cols=44 Identities=25% Similarity=0.469 Sum_probs=34.8
Q ss_pred EeeeEEEeCCceee--eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 62 VENFSLSAKGVELF--HNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 62 i~nls~~~~~~~ll--~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.+. +...+ ++++|.+.+| ..+|+||||||||||+++|.+.
T Consensus 4 i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 4 IEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4444443 22355 7889999999 9999999999999999999874
No 263
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.28 E-value=6.4e-08 Score=102.48 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=35.8
Q ss_pred ceeeeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 72 VELFHNANLQIASGR--------------------RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge--------------------~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+.+|+++||+|.+|+ ++||+||||||||||+++|+|..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999 99999999999999999999964
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.28 E-value=3.4e-07 Score=86.86 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.8
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
++|.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977655
No 265
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.27 E-value=1.7e-06 Score=90.19 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=74.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC-----------CCccEEEECCCeeEEEEecCCCCCCC--CCCCHHHH---HHHh--
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT-----------PNKGELRKSPRLRIGKFDQHSGEHLF--PDDTPCEY---LMKL-- 425 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~-----------p~~G~i~~~~~~~i~~~~q~~~~~l~--~~~~~~e~---l~~~-- 425 (568)
+++|+|+||||||||++.|+|... |+.|.+.... ..+-++. .+. .+. +...+..+ +...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~D-T~G-~i~~lp~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVD-TVG-FIRGIPPQIVDAFFVTLSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEE-CCC-BCSSCCGGGHHHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEe-CCC-chhcCCHHHHHHHHHHHHHHHh
Confidence 399999999999999999999876 4556666654 2232221 111 111 11111111 1000
Q ss_pred -------cCC--CH----H---HHHHHHHhCCCCCcc----ccCCCCCCCHhHHHHHHHH----HHH-ccCCCeEEEeCC
Q psy16366 426 -------FNL--PY----E---KSRRQLGMFGLPSYA----HTIPIRDLSGGQKARVALA----ELT-LNNPDILILDEP 480 (568)
Q Consensus 426 -------~~~--~~----~---~~~~~L~~~~l~~~~----~~~~~~~LSgGqkqRv~lA----~al-~~~p~lLlLDEP 480 (568)
+.. .. + .+...|..+++.... .+ ++..+|+|+++++.++ +.+ ..+|++ +|
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 111 11 1 134567777654322 22 4567898988888877 555 444454 89
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy16366 481 TNNLDIESIDALAEAIKN 498 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~ 498 (568)
||++|...++.|.+.|.+
T Consensus 333 ~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CBTTTTBSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999999988888765
No 266
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.25 E-value=1.1e-06 Score=91.40 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=79.7
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc--CcCCCccEEEECCC-----------eeEEEEecCCCCCCCCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~l~~~~ 416 (568)
.+|++++++++ .++|+|++|||||||++.|+| .+++..|.+...+. ...+.+.+.+.. .+.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRK-KFTDF 100 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTC-CBSCH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCc-ccCCH
Confidence 57888888888 899999999999999999999 56776775532211 122333322211 11111
Q ss_pred CH-HHHHHH----hcC----CCHHHH--------HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 417 TP-CEYLMK----LFN----LPYEKS--------RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 417 ~~-~e~l~~----~~~----~~~~~~--------~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.. ...+.. ..+ .+...+ ...+..+++++........+.++.++++..+++..+.+|+++||.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 10 000000 000 000000 0001122333332222223467889999999999999999888874
Q ss_pred CCCCCCHHHH--HHHHHHHHhcC-ceEEEEec
Q psy16366 480 PTNNLDIESI--DALAEAIKNYQ-GGVILVSH 508 (568)
Q Consensus 480 Pt~~LD~~~~--~~l~~~l~~~~-~tvi~vsH 508 (568)
..+..|.... ..+...+...+ .+|+++|.
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGGCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCCHHHHHHHHHhcccCCCEEEEEeC
Confidence 3344554432 22333333333 46777776
No 267
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.22 E-value=2.4e-07 Score=99.60 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=40.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
-+++||++..|++++|||+||||||||+++|+|... |.++.+.+...+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcc
Confidence 468999999999999999999999999999999632 4456777765543
No 268
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.21 E-value=1.3e-06 Score=90.12 Aligned_cols=123 Identities=13% Similarity=0.160 Sum_probs=81.7
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh----c
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----F 426 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~ 426 (568)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-++..... .| ..+.|+.- +++..+...+. .
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g-------~~Vl~fSl--------Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD-------RGVAVFSL--------EMSAEQLALRALSDLT 98 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT-------CEEEEEES--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEeC--------CCCHHHHHHHHHHHhh
Confidence 45555557899999999999999999999888765432 22 24555442 34554443322 1
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc-CceEE
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY-QGGVI 504 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~~-~~tvi 504 (568)
+++...++ -+.||.++.+|+..|...+.+++++|.|+|.. .+..+...+..+ .++ +..+|
T Consensus 99 ~v~~~~l~----------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 99 SINMHDLE----------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp CCCHHHHH----------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCHHHHh----------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEE
Confidence 22222211 14799999999999999999999999999864 454554444444 445 55677
Q ss_pred EEe
Q psy16366 505 LVS 507 (568)
Q Consensus 505 ~vs 507 (568)
||-
T Consensus 161 VID 163 (338)
T 4a1f_A 161 FID 163 (338)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.20 E-value=5.3e-07 Score=93.64 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=33.1
Q ss_pred Cceeeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 71 GVELFHNA-NLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 71 ~~~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
|-+.|+.+ ++.|.+|+.++|+||||||||||++.|++..
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33455555 6899999999999999999999999999863
No 270
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.19 E-value=4.3e-06 Score=81.28 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=36.6
Q ss_pred eeeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNA-NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.|+.+ .--|.+|+.++|+||||||||||+..++... .+.+..+.|+..+.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 345554 5568999999999999999999977665432 23345677776554
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.18 E-value=9.4e-08 Score=90.93 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=39.6
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
|++..+ +.....+.+++...+|++++|+||||||||||+++|++.+. ..|.+
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 4 NIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 455555 45556677788889999999999999999999999999987 66765
No 272
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.18 E-value=4.9e-07 Score=91.91 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=22.5
Q ss_pred eeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 63 ~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|++++|+++.++++++|+| +|||+||+|||||++.|.|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999998 99999999999999999985
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.18 E-value=6.4e-07 Score=83.97 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=25.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.+|++++|+||||||||||+++|+|.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999999995
No 274
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.17 E-value=8.6e-08 Score=101.81 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=50.2
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
.+.+++++++|+...+|+++ +. .+|+.++|+|||||||||||++|+|... |..+.+.+.+..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIE 206 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccch
Confidence 45677888777666788888 53 8899999999999999999999999532 34567777776553
No 275
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.16 E-value=1.9e-07 Score=88.77 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=36.2
Q ss_pred eeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 63 ~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+|+++.+++....+.+++...+|+.++|+|+||||||||+++|++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46677777777778888888999999999999999999999999853
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=8.6e-07 Score=84.13 Aligned_cols=37 Identities=32% Similarity=0.178 Sum_probs=24.0
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...++|+||++.+|.+++|+|++||||||+++.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999974
No 277
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.14 E-value=9.6e-07 Score=85.54 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=24.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.-...+|+.++|+||||||||||+++|+|..
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3467899999999999999999999999963
No 278
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.13 E-value=9.7e-07 Score=100.40 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=39.8
Q ss_pred ceEEeeeEEEe---CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 59 DIKVENFSLSA---KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 59 ~I~i~nls~~~---~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+++..... ++..+++|+||+ |++++|+||||||||||||+|+|.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 46777765443 456789999999 999999999999999999999985
No 279
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.13 E-value=2e-05 Score=81.69 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccE
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~ 392 (568)
.|.+|+++.|.||||||||||+..+++...+..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 47899999999999999999999999988765554
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.13 E-value=8.9e-07 Score=84.50 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=31.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
..+|+++||+||||||||||+++|+|... + .+.++.|+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--RVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--GEEEEEGGGC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--CeEEEecCcc
Confidence 46899999999999999999999999522 1 4667777653
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=1.1e-06 Score=83.37 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=24.9
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
...++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.11 E-value=8.1e-07 Score=83.03 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEE
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTP-NKGEL 393 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i 393 (568)
.+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998864 44544
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.10 E-value=9.8e-07 Score=84.42 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=25.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..+|+++||+||||||||||+++|+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999963
No 284
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.10 E-value=5e-07 Score=89.37 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=33.0
Q ss_pred eCCCEEEEECCCCChHHHHHHHHh---cCcCCCccEEE
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLK---GELTPNKGELR 394 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~ 394 (568)
.+|++++|+||||||||||+++|+ |+..|+.|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999876
No 285
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.09 E-value=1.1e-06 Score=83.70 Aligned_cols=26 Identities=42% Similarity=0.648 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+.++|+||||||||||+++|+|.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999999985
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.06 E-value=1.9e-06 Score=81.57 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=25.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++|.+|++++|+||||||||||+++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999999999964
No 287
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.02 E-value=1.8e-06 Score=92.05 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=37.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
|+++|+ .+| ++. . ++++.+|++++|+|||||||||||++|++++.|.++
T Consensus 7 l~~~~~-~~~-~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 7 LELSNF-KSY-RGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEESC-SSC-CSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEeCE-EEE-CCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 677888 677 332 1 255678999999999999999999999999888654
No 288
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.02 E-value=1.8e-06 Score=81.73 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
|++++|+||||||||||+++|+|..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999999853
No 289
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.02 E-value=1.3e-07 Score=92.15 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=35.2
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..|.++|++..++. +|++.+ ++++|+|||||||||||++|+|..
T Consensus 8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhccc
Confidence 45788888665432 566666 899999999999999999999964
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.01 E-value=2.5e-06 Score=80.97 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=24.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++-+-.++..+|++++|+|+||||||||+++|++.
T Consensus 17 ~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 334344466778999999999999999999999985
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.00 E-value=2e-06 Score=81.58 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.7
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
+...+|++++|+||||||||||+++|+|.+ |.+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i 58 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFA 58 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEE
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEE
Confidence 556789999999999999999999999976 65543
No 292
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.00 E-value=2.9e-06 Score=88.27 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=37.6
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.++++++. +...+++++|++.+| +++|+||||||||||+.+|.+
T Consensus 5 ~i~~L~l~--~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTL--NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CEEEEEEE--SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeEEEEe--CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 46666665 345678999999999 999999999999999999986
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.00 E-value=2.1e-06 Score=80.64 Aligned_cols=24 Identities=38% Similarity=0.695 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|+.++|+||||||||||+++|+|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999999985
No 294
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.99 E-value=2.6e-06 Score=88.29 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=71.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
..+..+.|.||+|+|||||++.+++.+.+..|. ...+.++.-... .+.... ...++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~~------~~~~~~-----------~~~i~~~ 100 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQI------DTPYRV-----------LADLLES 100 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHHH------CSHHHH-----------HHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCCC------CCHHHH-----------HHHHHHH
Confidence 357789999999999999999999987654321 112223321110 012221 1223333
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCCCCCCC---HHHHHHHHHHHHhc---CceEEEEecchH
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLD---IESIDALAEAIKNY---QGGVILVSHDER 511 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEPt~~LD---~~~~~~l~~~l~~~---~~tvi~vsHd~~ 511 (568)
++... +....+..+...... .++ ...|.+|++||+....+ ......+.+.+..+ +.++|++||+..
T Consensus 101 l~~~~-----~~~~~~~~~~~~~l~-~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 101 LDVKV-----PFTGLSIAELYRRLV-KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TSCCC-----CSSSCCHHHHHHHHH-HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred hCCCC-----CCCCCCHHHHHHHHH-HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 33321 112344444222222 222 23488999999987652 34455666666432 457999999886
Q ss_pred HHHhh
Q psy16366 512 LIRET 516 (568)
Q Consensus 512 ~i~~~ 516 (568)
+...+
T Consensus 175 ~~~~~ 179 (386)
T 2qby_A 175 FVDLL 179 (386)
T ss_dssp GGGGC
T ss_pred hHhhh
Confidence 54433
No 295
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.98 E-value=9.3e-07 Score=92.25 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=32.3
Q ss_pred eeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 75 FHNANLQIAS--GRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 75 l~~isl~i~~--Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
...++++|.+ |++++|+||||||||||+++|+|..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4668999999 9999999999999999999999963
No 296
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=3.7e-06 Score=85.51 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
+|++++|+||||||||||+++|+|... |.++.+.+.+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCC
Confidence 699999999999999999999999643 45667777776653
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=3.9e-06 Score=78.32 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|+.++|+||||||||||+++|++.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999985
No 298
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=2.6e-07 Score=94.66 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=75.8
Q ss_pred eEEEeCCCceeeeeeeEEEeCCC------EEEEECCCCChHHHHHHHHhcCcC--CCccEEEECCCeeEEEEecCCCCCC
Q psy16366 341 VTFGYPGGKVLLEKVNFGLDMES------RVALVGPNGIGKSTFLNLLKGELT--PNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 341 v~~~y~~~~~il~~vs~~i~~Ge------~~~ivG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
+++.| ++...+++++..+..+. ++||+||||||||||+++|++++. |+.|. ++++.++.. .
T Consensus 66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~--------v~~i~~D~f--~ 134 (321)
T 3tqc_A 66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN--------VEVITTDGF--L 134 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC--------EEEEEGGGG--B
T ss_pred HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe--------EEEEeeccc--c
Confidence 44445 45567777777777766 899999999999999999999987 44454 456666542 1
Q ss_pred CCCCCHHHH--HHHhcC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q psy16366 413 FPDDTPCEY--LMKLFN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 413 ~~~~~~~e~--l~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~ 486 (568)
.+. ...+. +...++ .+.....+.|..+.-....-..|. +|.+..+|+..+...+..|+|+|++-|..-.|.
T Consensus 135 ~~~-~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~--yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 135 YSN-AKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPV--YSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp CCH-HHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEE--EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cch-hhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccch--hhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 111 11110 001111 123334444444322110111232 344444444333345678999999999887765
No 299
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=3.6e-07 Score=93.54 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=48.2
Q ss_pred eeEEEeCCceeeeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 64 NFSLSAKGVELFHNANLQIASGR------RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 64 nls~~~~~~~ll~~isl~i~~Ge------~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
.+++.|++...|.+++..+..+. ++||+||||||||||+++|++.....|....+.++.++..
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 44555667778888888887776 8999999999999999999986433455566667776653
No 300
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.91 E-value=2.8e-05 Score=80.35 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=72.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|++|+++.|.||+|||||||+..++.. .++..|. ....+.|+.-+. .+....+.+.. ...+.+.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg----~~~~vlyi~~E~---~~~~~~l~~~~-~~~g~~~~~--- 186 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY----PGGKIIFIDTEN---TFRPDRLRDIA-DRFNVDHDA--- 186 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB----CCCEEEEEESSS---CCCHHHHHHHH-HHTTCCHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC----CCCeEEEEECCC---CCCHHHHHHHH-HHcCCCHHH---
Confidence 4679999999999999999999988874 3322111 112455655432 11111111121 223343322
Q ss_pred HHHhCCCCCccccCCCCCCCHhHH-HHHHHHHHHc----cCCCeEEEeCCCCCCCHH--------H----HHH----HHH
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQK-ARVALAELTL----NNPDILILDEPTNNLDIE--------S----IDA----LAE 494 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqk-qRv~lA~al~----~~p~lLlLDEPt~~LD~~--------~----~~~----l~~ 494 (568)
+++.+-+ . ...++.+. +.+..++.++ .+++++|+|+.++..... . ... |..
T Consensus 187 ~l~~l~~----~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~ 258 (343)
T 1v5w_A 187 VLDNVLY----A----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQK 258 (343)
T ss_dssp HHHTEEE----E----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHhceeE----e----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 2332211 0 11233332 3444445554 679999999999876442 1 122 233
Q ss_pred HHHhcCceEEEEecchH
Q psy16366 495 AIKNYQGGVILVSHDER 511 (568)
Q Consensus 495 ~l~~~~~tvi~vsHd~~ 511 (568)
+.++++.+||+++|-..
T Consensus 259 la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 259 ISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHTCEEEEEECC--
T ss_pred HHHHhCCEEEEEeecee
Confidence 33456789999999654
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.91 E-value=5e-06 Score=79.51 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=27.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
.+|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999877
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.90 E-value=1.3e-06 Score=95.08 Aligned_cols=37 Identities=27% Similarity=0.182 Sum_probs=34.4
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+++++++.+.+|+.++|+|||||||||||++|+|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578899999999999999999999999999999995
No 303
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.90 E-value=1.7e-07 Score=95.26 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECCCeeEEEEecCCCCCCCCCC---C--HHHHHHHhcCCCHHHHHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSPRLRIGKFDQHSGEHLFPDD---T--PCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~l~~~~---~--~~e~l~~~~~~~~~~~~~ 435 (568)
+.+++|+|++|+|||||++.|+|... +.++..........|++.++.....+.++ . ....+...+.. .+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~---~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNK---AASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTC---CTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHH---HHHH
Confidence 44899999999999999999999742 11111111122335666554321111111 1 00000000000 0000
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEE
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDIES-IDALAEAIKN----YQG--GVILV 506 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tvi~v 506 (568)
.+...++.-.... ...+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.+.+ ++. .+.++
T Consensus 85 ~l~~~D~vl~Vvd--~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 85 SIGDVELVIFVVE--GTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCCEEEEEEEEE--TTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHhcCCEEEEEEe--CCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence 1111111111111 123899886 4556665 67999998 8899765 4444444432 332 45566
Q ss_pred ecchHHHHhhCc
Q psy16366 507 SHDERLIRETDC 518 (568)
Q Consensus 507 sHd~~~i~~~~~ 518 (568)
+|+-.-+..+.+
T Consensus 156 A~~g~~v~~l~~ 167 (301)
T 1ega_A 156 AETGLNVDTIAA 167 (301)
T ss_dssp TTTTTTHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 676655544433
No 304
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.90 E-value=1e-06 Score=88.31 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=34.5
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+....+|+++++++..| ++|+||||||||||+++|+|.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 44567899999999999 999999999999999999995
No 305
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.88 E-value=3.6e-07 Score=90.07 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=44.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
.+++++.+.| +...+++++++.+++| ++|+||||||||||+++|++.+. .|.+..
T Consensus 26 ~~l~~l~~~~-~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~ 80 (254)
T 1ixz_A 26 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITA 80 (254)
T ss_dssp HHHHHHHHHH-HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEe
Confidence 3456666667 4567899999999999 99999999999999999999875 555543
No 306
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.87 E-value=4e-07 Score=89.73 Aligned_cols=47 Identities=34% Similarity=0.452 Sum_probs=41.3
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+++++..|+...+|+++++++.+| ++|+||||||||||+++|++.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34667777777778999999999999 999999999999999999985
No 307
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.86 E-value=3e-07 Score=94.82 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=43.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASG-------RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~G-------e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+..++|+..++...+++++++.|..| +.++|+||||+|||||+++|+|.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667777788888999999999877 89999999999999999999985
No 308
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.86 E-value=4.6e-06 Score=79.27 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.6
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999999865
No 309
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.86 E-value=3.4e-06 Score=80.20 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=31.9
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
..+|.+++|+|+||||||||+++|++.+++..|.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 357889999999999999999999999988777764
No 310
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.86 E-value=4.9e-06 Score=85.50 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
.+|++++|+||||||||||++.|+|... |.++.+.+.+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeeccc
Confidence 6899999999999999999999999642 45667777776653
No 311
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.84 E-value=3.8e-05 Score=81.64 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~ 440 (568)
++.+++++|||||||||++..|++.+.+..+.| .++.-+.. .....+. ...+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV--------llv~~D~~-----r~~a~eq-----------L~~~~~~~ 151 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV--------GLVAADVY-----RPAAYDQ-----------LLQLGNQI 151 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE--------EEEEECCS-----CHHHHHH-----------HHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--------EEEecCcc-----chhHHHH-----------HHHHHHhc
Confidence 467899999999999999999999988765543 34443321 0011222 22233344
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC-CC--CCHHHHHHHHHHHHh
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT-NN--LDIESIDALAEAIKN 498 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt-~~--LD~~~~~~l~~~l~~ 498 (568)
+++-+... ...+.-.-.+-+++.+...+++++|+|+|. .+ .|......+..++..
T Consensus 152 gv~~~~~~---~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 152 GVQVYGEP---NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp TCCEECCT---TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred CCceeecc---ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 54322111 112222223445666666789999999997 45 777766666655443
No 312
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.83 E-value=5.3e-07 Score=90.25 Aligned_cols=46 Identities=35% Similarity=0.481 Sum_probs=40.2
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++++...|+...+|+++++++.+| ++|+||||||||||+++|++.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 3556666677778899999999999 999999999999999999985
No 313
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.82 E-value=4.7e-06 Score=83.30 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.++||||||||||||+++|+|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.81 E-value=6.2e-06 Score=77.22 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred cCCeEEEEeCC-HHHHHhhhceeeEEcCCeeeE
Q psy16366 210 WKKTLLVVSHD-QSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 210 ~~~tvlvVSHd-~~~l~~v~d~ii~L~~g~l~~ 241 (568)
.+.++|.+||. ++.+..+|++|+ ++|++..
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred CccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 35789999998 999999999999 9999875
No 315
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=3.5e-06 Score=78.35 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=27.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+|++.+|+.++|+||||+|||||+++|++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566779999999999999999999999853
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.81 E-value=2.5e-06 Score=89.34 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=34.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+++++++.+|+.++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999999999999999999983
No 317
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.80 E-value=6.3e-06 Score=80.12 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=29.1
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
+..+|++++|+|+||||||||+++|+|. .|+|..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~ 49 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICL 49 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEE
Confidence 4468999999999999999999999997 566543
No 318
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.80 E-value=7.9e-06 Score=80.64 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
.+|++++|+||||||||||+++|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999999
No 319
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.79 E-value=3.3e-06 Score=86.53 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=37.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3678888889999999999999999999999999998877664
No 320
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.77 E-value=1.9e-05 Score=80.54 Aligned_cols=129 Identities=12% Similarity=0.216 Sum_probs=80.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
+-|+.+.-.+.+|+.+.|.|+.|+|||||+..++...-- .| ..+.|+.- +++..+...+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~sl--------E~s~~~l~~R~~--- 116 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSL--------EMGKKENIKRLI--- 116 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEES--------SSCHHHHHHHHH---
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEEC--------CCCHHHHHHHHH---
Confidence 346666656899999999999999999998877643221 22 24555542 244444332211
Q ss_pred HHHHHHHHHhCCCCCccccCCCCC--CCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-HHHHhcCce--EE
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIKNYQGG--VI 504 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~--LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~t--vi 504 (568)
.....+.+.... -.. ||.++++|+..|...+.++++++.|+|. +++..+...+ .+..+.+.. +|
T Consensus 117 -----~~~~~i~~~~l~----~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lV 185 (315)
T 3bh0_A 117 -----VTAGSINAQKIK----AARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIV 185 (315)
T ss_dssp -----HHHTTCCHHHHH----SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEE
T ss_pred -----HHHcCCCHHHHh----cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEE
Confidence 111111111111 123 9999999999999999899999999986 4454444333 333445656 77
Q ss_pred EEec
Q psy16366 505 LVSH 508 (568)
Q Consensus 505 ~vsH 508 (568)
+|-|
T Consensus 186 VID~ 189 (315)
T 3bh0_A 186 MIDY 189 (315)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7755
No 321
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.76 E-value=9.5e-06 Score=86.79 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.1
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHh---cCceEEEEecch
Q psy16366 470 NNPDILILDEPTNNLDI-ESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.+|++|++||+..-.+. .....+...++. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999877764 566777777654 356789999973
No 322
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.76 E-value=1.2e-05 Score=78.77 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---cC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIA---TR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~La---G~ 108 (568)
.+++++|+||||||||||+++|+ |.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999999 84
No 323
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.76 E-value=2.9e-06 Score=88.14 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=47.6
Q ss_pred eEEEEeeEEEeCCCceeee--------------eeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 335 VLGLHDVTFGYPGGKVLLE--------------KVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~--------------~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-+.++||++.||..+..++ |+.+.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3568999999987788899 899999999999999999999999999998865
No 324
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.75 E-value=9.3e-06 Score=74.64 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999998653
No 325
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=0.0001 Score=71.54 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=62.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEE--ECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELR--KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 441 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~--~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~ 441 (568)
+++|+|++|+|||||++.|+|...+..+... .........+.-+. ..+ ..++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i-------------------------~liD 84 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TEL-------------------------VVVD 84 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEE-------------------------EEEE
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceE-------------------------EEEE
Confidence 4899999999999999999998776665431 11111111111000 000 0111
Q ss_pred CCCccccCCCCCCCHhHHHH--HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec-ch
Q psy16366 442 LPSYAHTIPIRDLSGGQKAR--VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-----GGVILVSH-DE 510 (568)
Q Consensus 442 l~~~~~~~~~~~LSgGqkqR--v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsH-d~ 510 (568)
.++... ...|+.+.++ ..........|+++|+..+.+.++......+..++..++ .+||++|| |.
T Consensus 85 TpG~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 85 TPGIFD----TEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp CCSCC---------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCccC----CCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 111111 1233333222 112222345789999999998888877666666654332 47888999 54
No 326
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.75 E-value=6.3e-05 Score=77.01 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=73.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCc-CCC-ccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGEL-TPN-KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-~p~-~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|++|+++.|.||+|+|||||+..++... .|. .|- ...++.|+.-+. .+....+.+.. ...+.+.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg----~~~~vlyi~~e~---~~~~~~l~~~~-~~~g~~~~~--- 171 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG----LSGKAVYIDTEG---TFRWERIENMA-KALGLDIDN--- 171 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSCEEEEEESSS---CCCHHHHHHHH-HHTTCCHHH---
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC----CCCeEEEEECCC---CCCHHHHHHHH-HHhCCCHHH---
Confidence 57899999999999999999998887642 231 110 012345554332 11111111121 223333322
Q ss_pred HHHhCCCCCccccCCCCCCCHhH-HHHHHHHHHHc---cCCCeEEEeCCCCCCCHH--------H----HHH----HHHH
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQ-KARVALAELTL---NNPDILILDEPTNNLDIE--------S----IDA----LAEA 495 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGq-kqRv~lA~al~---~~p~lLlLDEPt~~LD~~--------~----~~~----l~~~ 495 (568)
+++.+- . ....+..+ .+.+..++.++ .+|+++|+|+.++-.... . ... |..+
T Consensus 172 ~~~~l~----~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~l 243 (324)
T 2z43_A 172 VMNNIY----Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRL 243 (324)
T ss_dssp HHHTEE----E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HhccEE----E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 222111 0 11233332 34566666666 679999999999865421 1 122 2333
Q ss_pred HHhcCceEEEEecchH
Q psy16366 496 IKNYQGGVILVSHDER 511 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~ 511 (568)
.++++.+||+++|-..
T Consensus 244 a~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 244 AEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHTCEEEEEEEC--
T ss_pred HHHhCCEEEEEcceee
Confidence 3456789999988553
No 327
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.74 E-value=0.00012 Score=73.39 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=65.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~ 440 (568)
++..+.|.||+|+|||||++.|++.... . .-.+. .. .+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~--~~-~l~--------------------------- 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNIS--AA-SLT--------------------------- 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEE--ST-TTS---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEee--HH-HHh---------------------------
Confidence 3567899999999999999999986521 1 11111 00 000
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH----------HHHHHHHHHHHhcC-------ceE
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----------ESIDALAEAIKNYQ-------GGV 503 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~----------~~~~~l~~~l~~~~-------~tv 503 (568)
.. ..-++++..+..+..+...+|.+|++||+.+-++. .....+...+.... ..|
T Consensus 92 ------~~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 92 ------SK---YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp ------SS---SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred ------hc---ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 00 01246788888888888899999999999876553 22344555555542 246
Q ss_pred EEEecchH
Q psy16366 504 ILVSHDER 511 (568)
Q Consensus 504 i~vsHd~~ 511 (568)
|.+|++.+
T Consensus 163 i~~tn~~~ 170 (297)
T 3b9p_A 163 LAATNRPQ 170 (297)
T ss_dssp EEEESCGG
T ss_pred EeecCChh
Confidence 77788653
No 328
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.71 E-value=1.2e-05 Score=85.10 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=32.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-++++|+|..|+.++|||+||||||||+++|+|.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999986
No 329
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.71 E-value=1.7e-05 Score=89.19 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=69.7
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHH
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 433 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~ 433 (568)
++.+.++..++|+|+||+|||||++.|++...+ ..|+| ... . ...+....+.- .......+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g---------~----~~~d~~~~e~~-~giti~~~~~ 67 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEG---------T----TTTDYTPEAKL-HRTTVRTGVA 67 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGT---------C----CSSCCSHHHHH-TTSCCSCEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCC---------c----ccccCCHHHHh-cCCeEEecce
Confidence 456788999999999999999999999976544 45554 110 0 11111121110 0000000000
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHH
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 512 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 512 (568)
.+..-+..-.....| +.-. -.......+-..++-++++| |+++++..+... +..+...+..+|++.|.++.
T Consensus 68 --~~~~~~~~~nliDTp-G~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 68 --PLLFRGHRVFLLDAP-GYGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTERA-WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp --EEEETTEEEEEEECC-CSGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHHHHHTTCCEEEEEECGGG
T ss_pred --EEeeCCEEEEEEeCC-Cccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHHH-HHHHHHccCCEEEEecCCch
Confidence 000000000000001 1100 01223333446788899999 999999887744 44555567888999998875
No 330
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.70 E-value=1.7e-05 Score=75.82 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+.++|+||||||||||++.|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 47999999999999999999999986
No 331
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.69 E-value=1.5e-05 Score=73.22 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+++|+|+||||||||+++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999985
No 332
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.68 E-value=6.5e-06 Score=86.13 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=36.3
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+|++++ +.+|+.++|+||||||||||+++|+|...+. ..+.+...+..+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccH
Confidence 455544 7899999999999999999999999953221 145666666543
No 333
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.68 E-value=1.9e-05 Score=80.10 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=26.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
++..|++++|+||||||||||+++|+|...
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 345699999999999999999999999743
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.68 E-value=1.7e-05 Score=73.14 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35899999999999999999999974
No 335
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.65 E-value=2.2e-05 Score=84.36 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=42.3
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|-+.|+++..-+.+|+.+.|.|++|+|||||+..|++...+ ..+..++|+..|.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEM 242 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSS
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCC
Confidence 34568888878999999999999999999999999975321 1234678877665
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.65 E-value=1.4e-05 Score=77.54 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+..+|++++|+|+||||||||+++|+|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4468999999999999999999999984
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.65 E-value=2e-05 Score=74.88 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=27.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
++.+|.+++|+|++|||||||+++|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999999999864
No 338
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.64 E-value=3e-05 Score=80.41 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+|++++|+||||+|||||+++|+|...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 799999999999999999999999743
No 339
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.64 E-value=1.6e-05 Score=73.33 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+|++++|+|+||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 368899999999999999999999865
No 340
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.64 E-value=1.6e-05 Score=72.04 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEec
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~q 123 (568)
+|+.++|+||||+|||||+++|++... +.+..+.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcH
Confidence 899999999999999999999999532 23334555443
No 341
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.64 E-value=5.6e-07 Score=93.12 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=43.8
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
++.+.| +...+++++++.+..|.+++|+|+||+|||||++.|++.+.+..|.+
T Consensus 35 ~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 35 HPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred Cchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 333445 34567889999999999999999999999999999999988876654
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.62 E-value=2.6e-05 Score=70.66 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=24.4
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+.++.+.+| +.+|+||||||||||+.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3444555544 899999999999999999874
No 343
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.61 E-value=9.3e-06 Score=89.06 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=33.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc-EEE
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-ELR 394 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~ 394 (568)
.+.+|++++|+|+||||||||+++|+|.+.|+.| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 4679999999999999999999999999999886 553
No 344
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.59 E-value=3.5e-05 Score=69.79 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.++.+.+| ..+|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445555555 89999999999999999997
No 345
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.55 E-value=1.1e-05 Score=83.72 Aligned_cols=49 Identities=31% Similarity=0.346 Sum_probs=44.2
Q ss_pred ceEEeeeEEEeCC-ceeee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 59 DIKVENFSLSAKG-VELFH--------------NANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 59 ~I~i~nls~~~~~-~~ll~--------------~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.++|+++.|+. +..|+ |+.+.|.+|++++|+||+|||||||++.|++
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 5678889999865 56888 8999999999999999999999999999986
No 346
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.55 E-value=6.5e-06 Score=83.68 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++.+|++++|+||||+|||||+++|+|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 345579999999999999999999999964
No 347
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=3.4e-05 Score=73.28 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=24.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+....|+.++|+||||||||||++.|++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34457999999999999999999999985
No 348
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.50 E-value=1.4e-05 Score=76.81 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc---CCCccEEEE
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL---TPNKGELRK 395 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~---~p~~G~i~~ 395 (568)
+.+++|+||+||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 667776643
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.50 E-value=0.0006 Score=61.82 Aligned_cols=24 Identities=46% Similarity=0.732 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.49 E-value=1.3e-05 Score=81.21 Aligned_cols=60 Identities=22% Similarity=0.167 Sum_probs=47.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.++++++.|++.. ++++|+ +|++++++|+||+||||+++.|++... +.+..+.++..+.
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCc
Confidence 55677777776543 788888 899999999999999999999998532 3456777776654
No 351
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=7.1e-05 Score=75.88 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..|+.++|+||||||||||+++|+ ..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 469999999999999999999999 64
No 352
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.44 E-value=4e-05 Score=74.54 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=30.1
Q ss_pred eeeeeEEEe---CCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 352 LEKVNFGLD---MESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 352 l~~vs~~i~---~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 556666665 8999999999999999999999999887 5544
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.43 E-value=4.5e-05 Score=72.33 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=31.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..+|.+++|+|+||||||||++.|++... +.++.+.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCc
Confidence 46789999999999999999999998521 2344555555554
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.42 E-value=3.9e-05 Score=72.83 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.+|..++|+|++|||||||++.|++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999999985
No 355
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.42 E-value=9.1e-05 Score=85.10 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.7
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
|.+.+|+.++|+||||||||||+++|+|.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46789999999999999999999999998743
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00046 Score=71.56 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=66.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.+.+|+++.|.|++|+|||||...++...... | .++.|+.-... +. . ...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g-------~~vlyid~E~s--~~----~--~~a-------------- 108 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-G-------KTCAFIDAEHA--LD----P--IYA-------------- 108 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-T-------CCEEEEESSCC--CC----H--HHH--------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-C-------CeEEEEeCCCC--cc----H--HHH--------------
Confidence 47899999999999999999998877644322 2 13455554321 11 1 111
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCCCH-H-----------H--------HHHHHHH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI-E-----------S--------IDALAEA 495 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~LD~-~-----------~--------~~~l~~~ 495 (568)
..+|+... ...+..-+.++ +-+.+++.++ .+++++|+|.++.-... + . ...|..+
T Consensus 109 ~~~g~~~~--~l~i~~~~~~e-~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~ 185 (356)
T 1u94_A 109 RKLGVDID--NLLCSQPDTGE-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 185 (356)
T ss_dssp HHTTCCGG--GCEEECCSSHH-HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHH
T ss_pred HHcCCChh--heeeeCCCCHH-HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 12232210 00011111222 3345555553 67999999999987631 1 0 1123333
Q ss_pred HHhcCceEEEEecch
Q psy16366 496 IKNYQGGVILVSHDE 510 (568)
Q Consensus 496 l~~~~~tvi~vsHd~ 510 (568)
+++++.+||+++|-.
T Consensus 186 a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 186 LKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHTCEEEEEEC--
T ss_pred HHHhCCEEEEEeccc
Confidence 456788999999854
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.36 E-value=3.7e-05 Score=78.64 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=39.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.+++|++.+|++++|+|+||+||||++..|++... +.+..++++..++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 367888899999999999999999999999998532 3456777766554
No 358
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.36 E-value=0.00042 Score=69.94 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+.++..+.|.||+|+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34667889999999999999999999875
No 359
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.33 E-value=9.4e-05 Score=70.97 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.+++|+|++||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999984
No 360
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.32 E-value=5.9e-05 Score=78.09 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.+.+++|+|++|||||||++.|+|.+.|..|.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 3557999999999999999999998888777653
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=5.1e-05 Score=70.27 Aligned_cols=31 Identities=32% Similarity=0.296 Sum_probs=27.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.+|.+++|+|++||||||++++|++.+.| .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36889999999999999999999998765 45
No 362
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.31 E-value=5.1e-05 Score=70.44 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++|||+||||||||+++|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999995
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.27 E-value=0.00012 Score=69.26 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++||+|+|||||||++++|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999983
No 364
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.26 E-value=0.00013 Score=69.56 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=23.1
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHh
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
+.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44455554 489999999999999999875
No 365
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.25 E-value=7.8e-05 Score=70.19 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=31.6
Q ss_pred EEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 342 TFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 342 ~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++.|++-..+++++||..+.. .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 455655557889999887776 5899999999999999999873
No 366
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.25 E-value=0.00012 Score=68.38 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|+|+||||||||++.|+|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999754
No 367
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.24 E-value=0.00067 Score=73.47 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=28.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+++.+..|.+++|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888999999999999999999999875
No 368
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.24 E-value=0.00014 Score=67.37 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|.+++|+|++||||||+++.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999984
No 369
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.23 E-value=0.00016 Score=68.83 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.++.+.+| ..+|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566554 89999999999999999996
No 370
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.23 E-value=6.1e-06 Score=85.30 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=40.4
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.++.+.+|+...+++++++.+..|.+++|+|+||+|||||++.|++.
T Consensus 32 e~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 32 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455556666788899999999999999999999999999999974
No 371
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.22 E-value=7.7e-05 Score=75.77 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=36.0
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 78 isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+++...+|++++|+|+|||||||+++.|++... +.+..+.++..+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccc
Confidence 455667899999999999999999999998532 3455677766553
No 372
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.21 E-value=0.00012 Score=69.04 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 373
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.20 E-value=0.00014 Score=67.89 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++|++...|..++|+|++||||||+++.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999963
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.20 E-value=0.00014 Score=70.64 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=25.1
Q ss_pred eeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 75 FHNANLQIA---SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 75 l~~isl~i~---~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|.++||++. .|.++.|.|++||||||+++.|+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 455566665 8999999999999999999999975
No 375
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.19 E-value=0.00016 Score=67.95 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 376
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.18 E-value=3.3e-05 Score=80.44 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=37.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~ 392 (568)
.+.+.+++..| +.+.++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 17 ~v~~~~l~~~~-~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHH-HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHh-CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 57788888888 5677899999976 999999999999999998875554443
No 377
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=5.2e-05 Score=83.22 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=44.1
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.++++...| ....++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.
T Consensus 85 G~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 85 GLEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp SCHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred cHHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 345555555 3445677888887 8999999999999999999999999987666553
No 378
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.15 E-value=7.9e-05 Score=81.69 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=26.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+.+|+.++|+|+||||||||+++|+|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 57799999999999999999999999963
No 379
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.14 E-value=0.0006 Score=68.51 Aligned_cols=98 Identities=17% Similarity=0.353 Sum_probs=57.4
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l 442 (568)
..+.|+||+|+|||||+++|++.+.+..|.+. ++.-. .+... .....+ +|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~--------~~~~~---~~~~~-~~~~~l-----------------~g~ 98 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI--------RIDMT---EYMEK-HAVSRL-----------------IGA 98 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE--------EEEGG---GCCST-THHHHH-----------------HCC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE--------Eeecc---ccccc-ccHHHh-----------------cCC
Confidence 36889999999999999999999877666432 11111 11111 111111 111
Q ss_pred CCccccCCCCCCCHhHHHHHHHHHHHccCC-CeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 443 PSYAHTIPIRDLSGGQKARVALAELTLNNP-DILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 443 ~~~~~~~~~~~LSgGqkqRv~lA~al~~~p-~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
.. ...|- .++-.+..++...| .+|++||. ..|++.....|.+.|.+.
T Consensus 99 ~~--------~~~~~-~~~~~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 99 PP--------GYVGY-EEGGQLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp CT--------TSTTT-TTCCHHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred CC--------ccccc-cccchHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 10 00010 00012344444444 79999998 678999999999999764
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.12 E-value=0.0012 Score=70.55 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=80.5
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
+-|+.+.-.+.+|+.+.|.|++|+|||||+..++.......| ..+.|+.- +++..+...+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-------~~vl~~sl--------E~~~~~l~~R~---- 248 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-------VGVGIYSL--------EMPAAQLTLRM---- 248 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCEEEEES--------SSCHHHHHHHH----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEEC--------CCCHHHHHHHH----
Confidence 346666656899999999999999999999888765432222 23455432 23443332211
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH-HHHHHhcCceEEEEec
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGGVILVSH 508 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~~~tvi~vsH 508 (568)
.....+++.... .-+.||..+.+|+.-|...+...++++.|+|. +++..+... ..+..+.+..+|+|-+
T Consensus 249 ------~~~~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 249 ------MCSEARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp ------HHHHTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred ------HHHHcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 112234432211 12469999999998888777788899998774 445444433 3344455666776643
No 381
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.12 E-value=0.00017 Score=68.01 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 382
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.11 E-value=9.4e-05 Score=80.70 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=31.0
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
..+++++|++.+| ..+|+|+||||||||+.+|.+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999 999999999999999999964
No 383
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.09 E-value=4.8e-05 Score=84.60 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=40.5
Q ss_pred eeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 64 NFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 64 nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++--++...+++++++.+..|+.++|+||||||||||+++|++..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3444467778999999999999999999999999999999999963
No 384
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.08 E-value=0.00016 Score=75.91 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++..|.++||||+||+|||||+++|+|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~ 44 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSV 44 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44689999999999999999999999943
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.08 E-value=0.0001 Score=70.35 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=29.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 457889999999999999999999999887777
No 386
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.07 E-value=0.00022 Score=72.82 Aligned_cols=23 Identities=52% Similarity=0.550 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++|+|+||||||||+++|.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47999999999999999999986
No 387
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.07 E-value=0.00022 Score=67.63 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...+|..++|+||+|||||||++.|+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999874
No 388
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.05 E-value=0.00023 Score=66.30 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=26.4
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++|+...+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 389
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.05 E-value=0.00067 Score=68.96 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.9
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
+..+.|.||+|+|||||++.|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568999999999999999999876543
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.04 E-value=0.00017 Score=76.53 Aligned_cols=40 Identities=20% Similarity=0.012 Sum_probs=35.4
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
++++|+ ++.+++|+|+|||||||++..|++.+.+..|.|.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 567777 8999999999999999999999999998877654
No 391
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0014 Score=66.75 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987774
No 392
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=3e-05 Score=84.01 Aligned_cols=46 Identities=35% Similarity=0.481 Sum_probs=38.8
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++++...+.....|+++++.+..| ++|+||||+|||||+++|++.
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 3555555555667899999999999 999999999999999999985
No 393
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.01 E-value=0.00056 Score=65.50 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~ 440 (568)
.+..+.|.||+|+|||||++.++..+... ...+.|+.-.......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~--------~~~~~~~~~~~~~~~~--------------------------- 95 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL--------ERRSFYIPLGIHASIS--------------------------- 95 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEEGGGGGGSC---------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEHHHHHHHH---------------------------
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHHH--HHHHHHHHHhc---Cce-EEEEecc
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLDIES--IDALAEAIKNY---QGG-VILVSHD 509 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEPt~~LD~~~--~~~l~~~l~~~---~~t-vi~vsHd 509 (568)
..++ +.+|.+|++|| ...++... ...|...+... +.. +|++|+.
T Consensus 96 ------------------------~~~~~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 96 ------------------------TALLEGLEQFDLICIDD-VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp ------------------------GGGGTTGGGSSEEEEET-GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ------------------------HHHHHhccCCCEEEEec-cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.01 E-value=0.00032 Score=64.34 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|.+++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999864
No 395
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.00 E-value=0.0002 Score=66.57 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=29.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
.+|.+++|+|++||||||+++.|++.+.+..+.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4688999999999999999999999887655544
No 396
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.97 E-value=0.00038 Score=64.84 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=20.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678888887776 789999999999999999987
No 397
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.96 E-value=0.00031 Score=64.48 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+|.+++|||++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999864
No 398
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.95 E-value=3.2e-05 Score=84.97 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=37.9
Q ss_pred EeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 62 i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++..++....++.++++++ +|+.++|+||||||||||+++|++.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445555555556778888888 8999999999999999999999985
No 399
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.92 E-value=0.00037 Score=70.18 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.++||+|++|||||||++.|++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999985
No 400
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.90 E-value=4.5e-05 Score=74.14 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=67.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
..|+.++|+||+||||||++.++........|. ...++.+.+.|... ....+.+.+....+... -..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-----~~~~~~l~~~p~~~--la~q~~~~~~~~~~~~~------~~~ 140 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-----AAECNIVVTQPRRI--SAVSVAERVAFERGEEP------GKS 140 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-----GGGCEEEEEESSHH--HHHHHHHHHHHTTTCCT------TSS
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-----CCceEEEEeccchH--HHHHHHHHHHHHhcccc------Cce
Confidence 468899999999999999887765322111111 11234455544210 01111122211111000 000
Q ss_pred CCC----CCcc--ccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHH-HHHHHHHhcC--ceEEEE-ec
Q psy16366 440 FGL----PSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESID-ALAEAIKNYQ--GGVILV-SH 508 (568)
Q Consensus 440 ~~l----~~~~--~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~-~LD~~~~~-~l~~~l~~~~--~tvi~v-sH 508 (568)
.|. .... ....+--.+.|.-.+... ..+.+.+++|+||.-. ++|..... .+...+.... .+++++ |.
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~ 218 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI 218 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSS
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 000 0000 000111234566666543 3688999999999976 57777664 3444444332 233333 55
Q ss_pred chHHHHhh
Q psy16366 509 DERLIRET 516 (568)
Q Consensus 509 d~~~i~~~ 516 (568)
+.+.+.++
T Consensus 219 ~~~~~~~~ 226 (235)
T 3llm_A 219 DTSMFCEY 226 (235)
T ss_dssp CCHHHHHH
T ss_pred CHHHHHHH
Confidence 55544443
No 401
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.90 E-value=0.00038 Score=70.34 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=32.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.+|++++|+|+||+||||++..|++...+ ..+..+.++..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCc
Confidence 47999999999999999999999985321 1334677777665
No 402
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.90 E-value=0.00066 Score=70.70 Aligned_cols=44 Identities=16% Similarity=0.455 Sum_probs=32.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
..+..+++.. -..++++++++.+| ..+|+|+||||||||+-+|.
T Consensus 3 M~l~~L~l~n--Fr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNN--FKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEE--ETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEc--cccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455555541 12346777787775 89999999999999999986
No 403
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=6.9e-05 Score=77.00 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=39.3
Q ss_pred CCceeeeeeeEEEeCCCE--EEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 347 GGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~--~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
++..+++.++..|..|++ +.+.||+|+|||||++++++.+.+..+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 556788888889999988 999999999999999999998876554
No 404
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.88 E-value=0.00044 Score=65.46 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=25.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
..+|.+++|+||+|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45788999999999999999999988763
No 405
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.88 E-value=0.00012 Score=74.11 Aligned_cols=40 Identities=25% Similarity=0.105 Sum_probs=34.0
Q ss_pred ee-eeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 353 EK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 353 ~~-vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
.+ ++|+++ |.+++++|+||+||||++..|++.+.+..|.|
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 45 677765 99999999999999999999999998766554
No 406
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.88 E-value=0.0005 Score=63.59 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.++|+|++|+|||||++.++|...+..+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~ 31 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLG 31 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCC
Confidence 5899999999999999999997544333
No 407
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.88 E-value=5.4e-05 Score=77.80 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.2
Q ss_pred eEEEeCCceeeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcC
Q psy16366 65 FSLSAKGVELFHNANLQIASGRR--YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 65 ls~~~~~~~ll~~isl~i~~Ge~--~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|+..++...+++.++..|..|+. ++|.||+|+|||||+++|++.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33345566788888888999988 999999999999999999985
No 408
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.86 E-value=8.4e-05 Score=70.00 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=31.7
Q ss_pred EEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 66 SLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 66 s~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|++ ..+++++|++...+ +++|+|++|+|||||++.+.+..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCC
Confidence 445554 36888888888777 68999999999999999999753
No 409
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.0017 Score=64.39 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..+..+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345569999999999999999998865
No 410
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.85 E-value=9.7e-05 Score=76.84 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.|.+.|++..++.+.++++++|+| +|||+||+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 577888888888888999999977 999999999999999998753
No 411
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.85 E-value=0.003 Score=64.15 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|-+-|+.+.--+.+|+.+.|.|++|+|||||+..++.... . .+..++|+.-|.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~-~g~~vl~~slE~ 106 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-D-NDDVVNLHSLEM 106 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-T-TTCEEEEEESSS
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-H-cCCeEEEEECCC
Confidence 3455666665689999999999999999999999885321 1 235677777664
No 412
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.84 E-value=0.00045 Score=65.12 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+++|+|++|||||||++.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999974
No 413
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.84 E-value=0.00047 Score=63.82 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|.+++|+|++||||||+++.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999985
No 414
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.83 E-value=0.0016 Score=63.68 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+++|+|+.|+|||||++.|+|.-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 415
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.00024 Score=76.89 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=41.3
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.++++...| ....+++++++.+++| +.|+||||+|||||+++|++... .+.+.
T Consensus 42 ~l~~lv~~l-~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~ 94 (499)
T 2dhr_A 42 ELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFIT 94 (499)
T ss_dssp HHHHHHHHH-HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEE
T ss_pred HHHHHHHHh-hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEE
Confidence 344554445 3456789999999999 99999999999999999999864 44444
No 416
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.83 E-value=0.00055 Score=71.77 Aligned_cols=37 Identities=30% Similarity=0.615 Sum_probs=29.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcC-----------cCCCccEEEE
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGE-----------LTPNKGELRK 395 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~ 395 (568)
+..|..++|+|+||+|||||++.|+|. +.|..|.+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 356788999999999999999999998 5677777654
No 417
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00063 Score=65.97 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-.+|.+++|+|++||||||+++.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999973
No 418
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.00025 Score=72.52 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 511 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~ 511 (568)
++.||++|| ...|+......|.+.+.+.. ..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 567999999 88999999999999998764 34667776654
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.77 E-value=0.00068 Score=61.45 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 420
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.76 E-value=0.00014 Score=74.93 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=31.8
Q ss_pred eeeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRR--YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~--~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++.+++.+.+|++ ++|+|++|||||||+++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 366777888889988 999999999999999999974
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.75 E-value=0.00068 Score=62.97 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|..+.|+|++||||||+++.|+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999974
No 422
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.74 E-value=0.0006 Score=63.50 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=22.0
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+++++++..... +++|+|++|+|||||++.+.+..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSC
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCC
Confidence 4678888888877 79999999999999999999853
No 423
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.73 E-value=0.00013 Score=75.30 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=33.3
Q ss_pred eeeeeeeEEEeCCCE--EEEECCCCChHHHHHHHHhcCcC
Q psy16366 350 VLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~--~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.+++.+++.+.+|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367778888889998 99999999999999999998653
No 424
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.72 E-value=0.001 Score=70.79 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++|+|+||||||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 699999999999999999999854
No 425
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.72 E-value=0.00061 Score=64.18 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.71 E-value=0.0029 Score=59.95 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 511 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~ 511 (568)
.+|.+|++||.-. +|......|...+.+.. ..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3578999999755 88888999999888753 46888888764
No 427
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.71 E-value=0.00026 Score=75.04 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=44.0
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..++++..|++.. ++++|+ +|++++++|+|||||||++..|++... +.+..+.++..++
T Consensus 78 v~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred HHHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 3445666676544 677887 899999999999999999999998532 3456677666543
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.00048 Score=67.48 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=23.4
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++.++.+..| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 344445545544 999999999999999999985
No 429
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.0015 Score=67.17 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=64.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
..+..+.|.||.|+|||||++.++..+....+.. .....+-++.-. ...+....+ ..++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~------~~~~~~~~~-----------~~l~~~ 102 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSL--GVLVKPIYVNAR------HRETPYRVA-----------SAIAEA 102 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH--TCCEEEEEEETT------TSCSHHHHH-----------HHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc--CCCeEEEEEECC------cCCCHHHHH-----------HHHHHH
Confidence 3456799999999999999999988664321100 001112222211 112332222 223333
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHH-HHHHHHHHHHhc-------CceEEEEecc
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLDIE-SIDALAEAIKNY-------QGGVILVSHD 509 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEPt~~LD~~-~~~~l~~~l~~~-------~~tvi~vsHd 509 (568)
++.. .+....|.++.... +..++ ...|.+|++||.-.-.+.. ....+..++... +..+|++|++
T Consensus 103 l~~~-----~~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 103 VGVR-----VPFTGLSVGEVYER-LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HSCC-----CCSSCCCHHHHHHH-HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred hCCC-----CCCCCCCHHHHHHH-HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 4432 12234455552222 22233 2346799999985432221 345555555422 3478999988
Q ss_pred hH
Q psy16366 510 ER 511 (568)
Q Consensus 510 ~~ 511 (568)
..
T Consensus 177 ~~ 178 (387)
T 2v1u_A 177 LG 178 (387)
T ss_dssp ST
T ss_pred Cc
Confidence 73
No 430
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.69 E-value=0.0065 Score=63.07 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.+.+|+++.|.||.|+|||||+..++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999998776543
No 431
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.67 E-value=0.00067 Score=70.26 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.4
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
..+|+++++++. +++|||++|||||||++.|.|..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 357888888888 999999999999999999999643
No 432
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.66 E-value=0.0022 Score=57.79 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHH-------hcCC-Cc--cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEE
Q psy16366 177 ADAAEPRARRILA-------GLGF-TT--IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHL 234 (568)
Q Consensus 177 ~~~~~~~~~~~L~-------~lg~-~~--L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L 234 (568)
..+++++.+..++ .+-. .. ++|||. ++.+++..+ +.|||+||||.+ +..+||++++|
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ii~l 135 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVIRI 135 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEEEE
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCEEEEE
Confidence 4577777776554 1111 12 889992 555655543 579999999995 56799999999
Q ss_pred c--CCe
Q psy16366 235 D--MKK 238 (568)
Q Consensus 235 ~--~g~ 238 (568)
+ +|.
T Consensus 136 ~~~~g~ 141 (148)
T 1f2t_B 136 SLENGS 141 (148)
T ss_dssp EEETTE
T ss_pred EcCCCe
Confidence 4 553
No 433
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.66 E-value=0.00079 Score=69.67 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=34.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 127 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~ 127 (568)
-|.+|+.+.|+||||||||||+..++.... +.+..+.|+..+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccccc
Confidence 478999999999999999999999997532 234567777665433
No 434
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.00074 Score=62.42 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999853
No 435
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.64 E-value=0.00064 Score=64.69 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=25.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+..|.++.|+|++||||||+++.|++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999974
No 436
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.00096 Score=61.38 Aligned_cols=22 Identities=50% Similarity=0.844 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 437
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.61 E-value=0.00099 Score=60.48 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++||||||+++.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.60 E-value=0.00097 Score=61.58 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 439
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.58 E-value=0.0012 Score=60.53 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.|+|++||||||+++.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999974
No 440
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.58 E-value=0.001 Score=64.53 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999998743
No 441
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.56 E-value=0.0006 Score=68.95 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+.+++|||++|+|||||++.|.|...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 44899999999999999999999753
No 442
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.55 E-value=0.0074 Score=64.32 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=69.1
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH----hc
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LF 426 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~ 426 (568)
-|+.+.-.+.+|+.+.|.|+.|+|||||+--++...--. | ..+.|+.-+ ++..+...+ ..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-------~~vl~fSlE--------ms~~ql~~R~~~~~~ 249 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-------DVVNLHSLE--------MGKKENIKRLIVTAG 249 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-------CEEEEECSS--------SCTTHHHHHHHHHHS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-------CEEEEEECC--------CCHHHHHHHHHHHHc
Confidence 345444368999999999999999999987665432211 2 245555422 232222221 12
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HHHhcCce--E
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNYQGG--V 503 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~t--v 503 (568)
+++...++. .-..|+..+.+|+.-|...+.+.+++|.|+| ++++..+...+. +..+.+.. +
T Consensus 250 ~i~~~~l~~--------------g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~--~~s~~~i~~~ir~l~~~~~~~~~l 313 (444)
T 3bgw_A 250 SINAQKIKA--------------ARRDFASEDWGKLSMAIGEISNSNINIFDKA--GQSVNYIWSKTRQTKRKNPGKRVI 313 (444)
T ss_dssp CCCHHHHHH--------------TGGGTCCSCHHHHHHHHHHHHTSCEEEECCS--SCBHHHHHHHHHHHHHHSCSSCEE
T ss_pred CCCHHHHhc--------------ccCCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHHHHHHHHHHHHHhCCCCeE
Confidence 333222210 0012667777777777666666777777776 355555443333 33344555 6
Q ss_pred EEE
Q psy16366 504 ILV 506 (568)
Q Consensus 504 i~v 506 (568)
|+|
T Consensus 314 IVI 316 (444)
T 3bgw_A 314 VMI 316 (444)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 443
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.55 E-value=0.00098 Score=68.86 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.+.+++|+|++|||||||++.|.|... +.+..+.++..++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 466899999999999999999998532 3344555555443
No 444
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.55 E-value=0.0012 Score=60.80 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.49 E-value=0.00075 Score=62.64 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
-.+++|+|++|||||||++.|.+.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 357999999999999999999988754
No 446
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.47 E-value=0.017 Score=61.35 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999887764
No 447
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0016 Score=60.12 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
|-++.|+|++||||||+++.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999985
No 448
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.44 E-value=0.0038 Score=66.74 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHH
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~ 514 (568)
.+.+....+...+.+++++|+......-....-..+.+.+++.+..+|+|-+-.+...
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 4777777888888889988876655443333456788888888888888887666543
No 449
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.43 E-value=0.0013 Score=60.45 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+|++||||||+++.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999964
No 450
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.41 E-value=0.0009 Score=65.53 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHhcCcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+.|+||+|+|||||+++|++.+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998763
No 451
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.39 E-value=0.0016 Score=58.88 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy16366 87 RYGLVGPNGHGKTTLLRHI 105 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~L 105 (568)
+++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 452
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.35 E-value=0.00029 Score=71.26 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=43.3
Q ss_pred EEeeeEEEeCCceeeee-eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 61 KVENFSLSAKGVELFHN-ANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~-isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
-.++++..|++.. .+ ++|+.. |++++++|+||+||||++..|++... +.+..+.++..+.
T Consensus 76 ~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 76 VYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred HHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 3445555565543 45 777766 99999999999999999999998532 3355677766554
No 453
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.35 E-value=0.0018 Score=60.50 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|++||||||+++.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999974
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.35 E-value=0.0018 Score=60.00 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999974
No 455
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0018 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 456
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.33 E-value=0.0017 Score=63.83 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+||||||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999974
No 457
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.33 E-value=0.0019 Score=66.76 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=33.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
-|.+|+.+.|.||||||||||+..++.... ..+..+.|+..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHA 100 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 578999999999999999999999886422 23456777776643
No 458
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.33 E-value=0.002 Score=59.41 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+..+.|+|++||||||+.+.|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999999999985
No 459
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.32 E-value=0.013 Score=59.38 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=66.5
Q ss_pred EeCCCEEEEECCCCChHHHHH-HHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFL-NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLl-k~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
+.+| ++-|.||.|+|||||+ .+++...+...| .++.|+.-.. .+. . .+ +
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g-------~~vlyId~E~--s~~----~-~r---------------a 75 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD-------AVCLFYDSEF--GIT----P-AY---------------L 75 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT-------CEEEEEESSC--CCC----H-HH---------------H
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC-------ceEEEEeccc--hhh----H-HH---------------H
Confidence 5788 8999999999999995 444443321112 2345554322 121 1 11 2
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHH--c--cCCCeEEEeCCCCCCC-H--H-----------H-HH-------H
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELT--L--NNPDILILDEPTNNLD-I--E-----------S-ID-------A 491 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~--~~p~lLlLDEPt~~LD-~--~-----------~-~~-------~ 491 (568)
.++|++.... .+..-.-++++.+.++..+ + .+|+++++|--++-.- . + . .+ .
T Consensus 76 ~~lGvd~d~l--lv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~Lrk 153 (333)
T 3io5_A 76 RSMGVDPERV--IHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRI 153 (333)
T ss_dssp HHTTCCGGGE--EEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHH
T ss_pred HHhCCCHHHe--EEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHH
Confidence 3444432111 1111123566656666666 3 3699999998877641 0 0 1 11 2
Q ss_pred HHHHHHhcCceEEEEecchH
Q psy16366 492 LAEAIKNYQGGVILVSHDER 511 (568)
Q Consensus 492 l~~~l~~~~~tvi~vsHd~~ 511 (568)
|..++++++.+||+|-|=..
T Consensus 154 L~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 154 VTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhCCEEEEECCeee
Confidence 33345677889999999765
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.32 E-value=0.0019 Score=62.84 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.-+++|+||+||||||+++.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999953
No 461
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.31 E-value=0.0018 Score=61.61 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
No 462
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.29 E-value=0.0023 Score=58.63 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+|.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999998653
No 463
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0013 Score=63.87 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 464
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.28 E-value=0.0035 Score=64.31 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=39.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+-|+.+.--+.+|+.+.|.|++|+|||||+..|+..... .+..++|+.-|.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm 84 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM 84 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 445555556899999999999999999999999864221 455778877765
No 465
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.24 E-value=0.0021 Score=59.15 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+..+.|+|++||||||+++.|+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 466
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.21 E-value=0.0014 Score=68.60 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.+..++|+|++|||||||++.|++...+..+.|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5778999999999999999999998777777765
No 467
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.21 E-value=0.0024 Score=58.33 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999996
No 468
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.0016 Score=63.97 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...+..+.|+|++||||||+++.|+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999999974
No 469
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.16 E-value=0.003 Score=59.14 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|-+++|+|+.||||||+++.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999975
No 470
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.15 E-value=0.0022 Score=59.88 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++|+|++||||||+++.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999974
No 471
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.13 E-value=0.0023 Score=59.27 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|..+.|+|++||||||+++.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
No 472
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.13 E-value=0.0029 Score=58.41 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
|-+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998754
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.13 E-value=0.0027 Score=61.41 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|||++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 689999999999999999999754
No 474
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.12 E-value=0.0024 Score=58.60 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.11 E-value=0.0016 Score=65.70 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.+..+..+.|.||+|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34677899999999999999999999984
No 476
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.10 E-value=0.0027 Score=58.90 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.+++|+|+.||||||+++.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 477
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.10 E-value=0.016 Score=56.33 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.+.+....-+.|.||.|+|||||++.|+..+ ...+-++.-......+
T Consensus 33 ~~g~~~~~~vll~G~~GtGKT~la~~la~~~-----------~~~~~~~~~~~~~~~~---------------------- 79 (262)
T 2qz4_A 33 QLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----------QVPFLAMAGAEFVEVI---------------------- 79 (262)
T ss_dssp ---CCCCCEEEEESCTTSSHHHHHHHHHHHH-----------TCCEEEEETTTTSSSS----------------------
T ss_pred HcCCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CCCEEEechHHHHhhc----------------------
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC-----------CHHHHHHHHHHHHhcCc---
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL-----------DIESIDALAEAIKNYQG--- 501 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L-----------D~~~~~~l~~~l~~~~~--- 501 (568)
.-.+....+-.+..+....|.+|++||.-.-. +......+..++..+..
T Consensus 80 -----------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 80 -----------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred -----------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Q ss_pred ----eEEEEecchHHHH
Q psy16366 502 ----GVILVSHDERLIR 514 (568)
Q Consensus 502 ----tvi~vsHd~~~i~ 514 (568)
.||.+|.....+.
T Consensus 143 ~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 143 TDHVIVLASTNRADILD 159 (262)
T ss_dssp TCCEEEEEEESCGGGGG
T ss_pred CCCEEEEecCCChhhcC
No 478
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.0021 Score=65.86 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++|+||||+|||||+++|++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999984
No 479
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.08 E-value=0.0028 Score=57.22 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLL 382 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l 382 (568)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 480
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.08 E-value=0.0025 Score=62.58 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 481
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.003 Score=58.44 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+.+++|+|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999999985
No 482
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.06 E-value=0.0017 Score=63.76 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
..+.++.|+|++||||||+.+.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456799999999999999999998764
No 483
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.06 E-value=0.0026 Score=60.49 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=21.2
Q ss_pred CCEEEEECCCCChHHHHHHHHhc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 484
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.04 E-value=0.003 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 485
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.04 E-value=0.003 Score=59.18 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|+||||+|||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999753
No 486
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.03 E-value=0.00084 Score=63.48 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
+++|+|++|||||||++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 487
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.02 E-value=0.0033 Score=58.99 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|-+++|+|+.||||||+++.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999863
No 488
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.01 E-value=0.0023 Score=67.07 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+..|.+++|||+||+|||||+++|+|..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4567899999999999999999999863
No 489
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.00 E-value=0.024 Score=61.20 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.3
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.+.+|+.+.|.|+.|+|||||+.-++-.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 5789999999999999999997666543
No 490
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.98 E-value=0.0033 Score=59.21 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
..|-+++|+|+.||||||+++.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999985
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.98 E-value=0.003 Score=62.45 Aligned_cols=24 Identities=46% Similarity=0.645 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
No 492
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.97 E-value=0.0027 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997644
No 493
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.97 E-value=0.0034 Score=58.88 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++||||||+++.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999973
No 494
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.96 E-value=0.0051 Score=63.72 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.8
Q ss_pred CCEEEEECCCCChHHHHHHHHhc-----------CcCCCccEEEE
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKG-----------ELTPNKGELRK 395 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G-----------~~~p~~G~i~~ 395 (568)
|-.++|+|.+|+|||||++.|+| -+.|+.|.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~ 46 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec
Confidence 56799999999999999999998 34566676654
No 495
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.93 E-value=0.0034 Score=66.77 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+||+|||||++.|.|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 89999999999999999999974
No 496
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.92 E-value=0.0017 Score=61.39 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++|||||||++.|+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 497
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.92 E-value=0.0014 Score=70.59 Aligned_cols=37 Identities=38% Similarity=0.558 Sum_probs=30.9
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 70 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.....+.++++.+..| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 36 KDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred hChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3445677777777777 999999999999999999985
No 498
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.90 E-value=0.0034 Score=62.89 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.|+||+|||||||.+.|+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 499
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.90 E-value=0.0033 Score=57.75 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
++..+.|+|++||||||+++.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
No 500
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.90 E-value=0.0056 Score=57.84 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 70 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+...++..-+.+ .|..+.|+||+|+|||||+..|+.+
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3445566655555 5889999999999999999999865
Done!