RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16366
(568 letters)
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 396 bits (1020), Expect = e-132
Identities = 171/531 (32%), Positives = 267/531 (50%), Gaps = 53/531 (9%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
I +EN SL+ L N +L + G R GLVG NG GK+TLL+ +A +
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 119 L------YCEQEVEA-SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE 171
Y QE + + ++ V+ +LL E + + + L E+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEAL 122
Query: 172 LKSIEADAAEPRARRILAGLGFTTIYIPSS--------RVH---------EIM------- 207
L+ ++ E RA L GLGF P S RV +++
Sbjct: 123 LEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTN 182
Query: 208 --------------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY 253
+ + T++VVSHD+ FL+N+ T I+ LD KL YKGN++ + +
Sbjct: 183 HLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQK 242
Query: 254 VQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313
++ ++ YE Q+K++ + + + + KA + KA ++R + + + E
Sbjct: 243 AERLRQEAAAYEKQQKELAKEQEW-IRRGKAAASKAKKA---KSRIKRLEKLEARLAEER 298
Query: 314 EKPREYIVKFRFPNPP-YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNG 372
+ FRFP P L VL +V+ GY GG++LL+ ++F +D R+A+VGPNG
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNG 358
Query: 373 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYE 431
GKST L LL GEL P G ++ ++IG FDQH + L PD T E L + F + +
Sbjct: 359 AGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQ 417
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ R LG FG P+ LSGG+KAR+ LA+L L P++L+LDEPTN+LDIES++A
Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 492 LAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542
L EA+ +++G V+LVSHD + +W +E K + +F G ++DY E+
Sbjct: 478 LEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDK-VEEFEGGYEDYLEQK 527
Score = 171 bits (436), Expect = 8e-47
Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 38/244 (15%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ L +++ Y G + LLE V+ L+ R+ LVG NG GKST L +L GEL P+ GE
Sbjct: 1 MSMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 393 LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR----------------- 435
+ + LR+G Q L P+ T +Y+++ F E
Sbjct: 60 VTRPKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117
Query: 436 -------QLGMFGLPSYAHTI-----------PIRDLSGGQKARVALAELTLNNPDILIL 477
+L + L + A P+ LSGG + RVALA L PD+L+L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537
DEPTN+LD+ESI+ L + +K Y G VI+VSHD + + L++ + + G++
Sbjct: 178 DEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237
Query: 538 YREK 541
Y E+
Sbjct: 238 YLEQ 241
Score = 42.6 bits (101), Expect = 4e-04
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 205 EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKE 259
E + ++ T+L+VSHD+ FL+ + T I ++ K+ ++G + Y++++KE
Sbjct: 480 EALLDFEGTVLLVSHDRYFLDRVATRIWLVE-DKVEEFEGGYE----DYLEQKKE 529
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 358 bits (921), Expect = e-115
Identities = 206/604 (34%), Positives = 318/604 (52%), Gaps = 90/604 (14%)
Query: 8 KEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL 67
K K++ +++ +YQ ++ + + + + + DI +ENFS+
Sbjct: 134 KRKEERQREVQYQAHVAEMEAAKAGMPGVYVNHDGNGGGPAIK--------DIHMENFSI 185
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVE 126
S G +L +A++ +A GR YGLVG NG GKTT LR++A A+ IP + +L+ EQEV
Sbjct: 186 SVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV 245
Query: 127 ASDDSAVNIVLSADKNRVKLLKECSKL--------ERDESGDNQL-------------RL 165
D +A+ VL+ D R +LL+E ++L E+G + RL
Sbjct: 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL 305
Query: 166 TEVYDELKSIEADAAEPRARRILAGLGFT-----------------------TIYI---- 198
E+Y L+ I+A AE RA ILAGL FT ++I
Sbjct: 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL 365
Query: 199 -----PSSRV--HEIM------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245
P++ + H ++ W KT +VVSH + FLN + TDI+HL +KL YKG+
Sbjct: 366 LLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425
Query: 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKS-----QGMSKEKAERQHSHKALKEQARKR 300
+ F++ ++ K K +E E+ M++ + +K + Q KAL
Sbjct: 426 YDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVD 485
Query: 301 VQKDDDDEPKELLEKPREYIVKFRFPNPPYLP-PPVLGLHDVTFGYPGGKVLLEKVNFGL 359
+D D KF FP P P PP++ D +FGYPGG +L + +NFG+
Sbjct: 486 AVVNDPD-------------YKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGI 532
Query: 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
D++SR+A+VGPNGIGKST L L+ GEL P+ G + +S ++R+ F QH + L P
Sbjct: 533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPL 592
Query: 420 EYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
Y+M+ F +P +K R LG FG+ P+ LSGGQK+RVA A++T P IL+LD
Sbjct: 593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD 652
Query: 479 EPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538
EP+N+LD+++++AL + + +QGGV++VSHDE LI + ELW + + + F+G F DY
Sbjct: 653 EPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712
Query: 539 REKL 542
++ L
Sbjct: 713 KKTL 716
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 219 bits (559), Expect = 2e-63
Identities = 165/526 (31%), Positives = 263/526 (50%), Gaps = 77/526 (14%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLL----RHIATRA--LAIPSSIDLLYCEQEVEA 127
L NA I G++ GLVG NG GK+TLL I+ P + L + QE A
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 128 SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 187
A+ V+ D+ +L E + +E D T ++ +L +I+A RA +
Sbjct: 76 LPQPALEYVIDGDREYRQL--EAQLHDANERNDGHAIAT-IHGKLDAIDAWTIRSRAASL 132
Query: 188 LAGLGFTTIYI--PSS--------RVH----EIMRT----------------------WK 211
L GLGF+ + P S R++ I R+ W
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192
Query: 212 K----TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQ 267
K TL+++SHD+ FL+ I IIH++ + LF Y GN++ F+ + + YE Q
Sbjct: 193 KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQ 252
Query: 268 EKQIREMKSQGMSKEKAERQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIV----- 321
++++ ++S + + +A KA K +QA+ R++ +LE+ E I
Sbjct: 253 QERVAHLQSY-IDRFRA------KATKAKQAQSRIK---------MLER-MELIAPAHVD 295
Query: 322 ---KFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 378
F F P LP P+L + V+ GY G +++L+ + L SR+ L+G NG GKST
Sbjct: 296 NPFHFSFRAPESLPNPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTL 354
Query: 379 LNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-L 437
+ LL GEL P GE+ + +++G F QH E L D++P ++L +L E+ R L
Sbjct: 355 IKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYL 414
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
G FG T R SGG+KAR+ LA + P++L+LDEPTN+LD++ AL EA+
Sbjct: 415 GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474
Query: 498 NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLL 543
+++G +++VSHD L+R T +L+ + + F+GD +DY++ L
Sbjct: 475 DFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLS 520
Score = 67.1 bits (164), Expect = 1e-11
Identities = 32/99 (32%), Positives = 64/99 (64%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
P+ D SGG + R+ LA+ + D+L+LDEPTN+LD++++ L + +K+YQG +IL+SHD
Sbjct: 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHD 205
Query: 510 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548
+ ++ +E++++ ++ G++ + + T L +
Sbjct: 206 RDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQ 244
Score = 43.2 bits (102), Expect = 3e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
G +VLL+ ++ +V LVG NG GKST L LLK E++ + G
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG 56
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 175 bits (446), Expect = 2e-52
Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 48/189 (25%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
L +++ Y GGK+LL+ ++ ++ R+ LVG NG GKST L L+ GEL P++G +
Sbjct: 3 LENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 457
++IG F+Q LSGG
Sbjct: 62 TVKIGYFEQ-----------------------------------------------LSGG 74
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 517
+K R+ALA+L L NP++L+LDEPTN+LD+ESI+AL EA+K Y G VILVSHD + +
Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVA 134
Query: 518 CELWALEKK 526
++ LE
Sbjct: 135 TKIIELEDG 143
Score = 87.9 bits (219), Expect = 1e-20
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 61/189 (32%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI------P 113
I++EN S + G L + +L I G R GLVG NG GK+TLL+ IA
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 114 SSIDLLYCEQEVEASDDSAVNIVLS-ADKNRVKLLKECSKLERDESGDNQLRLTEVYDE- 171
S++ + Y EQ LS +K R+ L K N L L DE
Sbjct: 61 STVKIGYFEQ-------------LSGGEKMRLALAKLLL------ENPNLLLL----DEP 97
Query: 172 -----LKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNN 226
L+SIEA + E ++ + T+++VSHD+ FL+
Sbjct: 98 TNHLDLESIEA-------------------------LEEALKEYPGTVILVSHDRYFLDQ 132
Query: 227 ICTDIIHLD 235
+ T II L+
Sbjct: 133 VATKIIELE 141
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 168 bits (428), Expect = 1e-45
Identities = 146/542 (26%), Positives = 243/542 (44%), Gaps = 111/542 (20%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS----SID----LLYCEQEV 125
LF N +++ G RYGL+G NG GK+T ++ I L PS S+D L Q+
Sbjct: 16 LFENISVKFGGGNRYGLIGANGCGKSTFMK-ILGGDLE-PSAGNVSLDPNERLGKLRQDQ 73
Query: 126 EASDD-SAVNIVLSADKNRVKLLKECSKLERDE-------SGDNQLRLTEVYDELKSIEA 177
A ++ + ++ V+ +L + K ERD S ++ +++ ++ E+K E
Sbjct: 74 FAFEEFTVLDTVIMGHT---ELWE--VKQERDRIYALPEMSEEDGMKVADL--EVKFAEM 126
Query: 178 D--AAEPRARRILAGLGFTTI--YIPSSRV------------------------------ 203
D AE RA +L G+G Y S V
Sbjct: 127 DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNL 186
Query: 204 --------HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ 255
+++ T++++SHD+ FLN++CT + LD +L Y GN+
Sbjct: 187 DINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY--------- 237
Query: 256 KRKELTKEYELQEKQIREMKSQGMSKEKAE--------RQHSHKALK-EQARKRVQKDDD 306
EY Q RE +K+KA+ + S A K +QA R ++ D
Sbjct: 238 ------DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDK 291
Query: 307 DEPKELLEKPREYIVKF-RFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV 365
+ +E+ KP F RF L L + ++T G+ L + +N L+ R+
Sbjct: 292 IKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGF-DNGPLFKNLNLLLEAGERL 348
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425
A++G NG+GK+T L L GEL P+ G ++ S IG + Q + F +D + L
Sbjct: 349 AIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDH-AYDFEND------LTL 401
Query: 426 FNLPY----EKSRRQL--GMFG-LPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILI 476
F+ E Q G G L I ++ LSGG+K R+ +L + P++L+
Sbjct: 402 FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461
Query: 477 LDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536
+DEPTN++D+ESI++L A++ Y+G +I VSHD + + + + F+G ++
Sbjct: 462 MDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521
Query: 537 DY 538
+Y
Sbjct: 522 EY 523
Score = 98.8 bits (247), Expect = 8e-22
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 50/246 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF-- 404
G K L E ++ +R L+G NG GKSTF+ +L G+L P+ G + P R+GK
Sbjct: 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71
Query: 405 DQHSGE-------------------------HLFPDDTPCEYLMKLFNLPYE-------- 431
DQ + E + P+ + + MK+ +L +
Sbjct: 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDG-MKVADLEVKFAEMDGYT 130
Query: 432 -KSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
++R LG+ G+P H + +++ G K RV LA+ +NPDIL+LDEPTNNLDI
Sbjct: 131 AEARAGELLLGV-GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189
Query: 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWA-LEKKNIRKFNGDFDDY-------R 539
+I L + + +I++SHD R + C A L+ +R + G++D+Y R
Sbjct: 190 TIRWLEDVLNERNSTMIIISHD-RHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQAR 248
Query: 540 EKLLTS 545
E+LL
Sbjct: 249 ERLLAD 254
Score = 45.3 bits (108), Expect = 8e-05
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
VEN + LF N NL + +G R ++G NG GKTTLLR
Sbjct: 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLR 363
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 145 bits (367), Expect = 6e-37
Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 82/370 (22%)
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYEL 266
++T++ +++ +SHD+SF+ N+ T I+ LD KL Y GN+ Y+ +++E + EL
Sbjct: 199 LKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ----YLLEKEEALRVEEL 254
Query: 267 Q-----------EKQIREMKSQGMSKEKAERQHSH------KALKEQARKR--------V 301
Q E IR QG+ KA R + KAL+ + +R +
Sbjct: 255 QNAEFDRKLAQEEVWIR----QGI---KARRTRNEGRVRALKALRRERSERREVMGTAKM 307
Query: 302 QKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDM 361
Q ++ ++ V + +V + G K L++ + +
Sbjct: 308 QVEEASRSGKI----------------------VFEMENVNYQIDG-KQLVKDFSAQVQR 344
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
++AL+GPNG GK+T L L+ G+L + G + +L + FDQH E L P+ T +
Sbjct: 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE-LDPEKTVMD- 402
Query: 422 LMKLFNLPYEK--------SRRQLG-----MFGLPSYAHTIPIRDLSGGQKARVALAELT 468
NL K R LG +F P A T P++ LSGG++ R+ LA L
Sbjct: 403 -----NLAEGKQEVMVNGRPRHVLGYLQDFLFH-PKRAMT-PVKALSGGERNRLLLARLF 455
Query: 469 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKN- 527
L ++LILDEPTN+LD+E+++ L E + +YQG V+LVSHD + + T E W E
Sbjct: 456 LKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGK 515
Query: 528 IRKFNGDFDD 537
I ++ G + D
Sbjct: 516 IGRYVGGYHD 525
Score = 93.9 bits (234), Expect = 4e-20
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 42/227 (18%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------RKSPR 398
LL+ ++ RV LVG NG GKST + +L GE+ + G + + PR
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77
Query: 399 LRIGK-FD------QHSGEHLF------------PDDTPCEYLMKL------FNLPYEKS 433
G +D + E+L P + L KL NL ++
Sbjct: 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137
Query: 434 RRQ--LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
R L GL + LSGG + AL ++NPD+L+LDEPTN+LDIE+I+
Sbjct: 138 RINEVLAQLGLD--PDA-ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEW 194
Query: 492 LAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538
L +K +QG +I +SHD IR + L++ + + G++D Y
Sbjct: 195 LEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
Score = 39.2 bits (92), Expect = 0.005
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+EN + G +L + + Q+ G + L+GPNG GKTTLL+
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLK 363
Score = 36.1 bits (84), Expect = 0.046
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I + LS L NA L I R LVG NG GK+TL++ +
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN 50
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 143 bits (362), Expect = 1e-36
Identities = 96/352 (27%), Positives = 178/352 (50%), Gaps = 36/352 (10%)
Query: 213 TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF-----KKMYVQKRKELTKEYELQ 267
T++ V+HD+ FL+N+ I+ LD + ++GN++ + K++ ++++E ++ L+
Sbjct: 210 TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALK 269
Query: 268 EKQ--IREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 325
+ +R +K KA + L ++ +KR +E E+ YI
Sbjct: 270 RELEWVRSSPKARQAKSKARLARYEELLSQEFQKR------NETAEI------YI----- 312
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P P L V+ +++ G+ G K+L++ ++F L V ++GPNG GKST ++ G+
Sbjct: 313 PPGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ 371
Query: 386 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQLG 438
P+ G ++ +++ DQ S + L P+ T E +++L E SR +G
Sbjct: 372 EQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIQLGK--REVPSRAYVG 428
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
F + LSGG++ RV LA+ + ++L+LDEPTN+LD+E++ AL EA+
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLE 488
Query: 499 YQGGVILVSHDERLIRETDCELWALE-KKNIRKFNGDFDDYREKLLTSLGEA 549
+ G +++SHD + + A E ++ F G++ +Y E LGE
Sbjct: 489 FAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGED 540
Score = 82.7 bits (205), Expect = 1e-16
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
+ LSGG++ RVAL L L+ PD+L+LDEPTN+LD ES+ L + ++ Y G V+ V+HD
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
Score = 42.6 bits (101), Expect = 5e-04
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
++ V+ P K +L+ ++ +++ ++G NG GKST L ++ G GE R +P
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66
Query: 398 RLRIGKFDQ 406
+++G Q
Sbjct: 67 GIKVGYLPQ 75
Score = 41.8 bits (99), Expect = 0.001
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 36/157 (22%)
Query: 3 KKLSHKEKKQLKKQSKYQQEL----SALSGGQGT--------DELENFTVSQSSKASSKR 50
K+L +EK++ +Q ++EL S+ Q +EL S+ KR
Sbjct: 252 KRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEEL-------LSQEFQKR 304
Query: 51 STVDD----------NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ + + V I+ EN S L + + ++ G G++GPNG GK+T
Sbjct: 305 NETAEIYIPPGPRLGDKV-IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKST 363
Query: 101 LLRHIATR------ALAIPSSIDLLYCEQEVEASDDS 131
L R I + + I ++ L Y +Q +A D +
Sbjct: 364 LFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400
Score = 34.5 bits (80), Expect = 0.17
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
E+ + +L G + G++G NG GK+TLLR +A
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA 52
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 124 bits (313), Expect = 1e-32
Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
L +++F YP G + L+ ++ + V +VGPNG GKST L LL G L P GE+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 395 -KSPR-LRIGKFDQHSG------EHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGM 439
K L + + + G + F T E + ++ LP E+ + L +
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
GL LSGGQK RVA+A + +PDIL+LDEPT LD L E +K
Sbjct: 122 VGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 500 QG---GVILVSHDERLIRE 515
+ +I+V+HD L+ E
Sbjct: 181 KAEGKTIIIVTHDLDLLLE 199
Score = 59.0 bits (144), Expect = 6e-10
Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 79/231 (34%)
Query: 61 KVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
+++N S S + +L I G +VGPNG GK+TLLR + L P+S ++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN--GLLGPTSGEV 58
Query: 119 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESG------DNQLRLTEVYDEL 172
L +++ LKE + + G D+Q V +E+
Sbjct: 59 LVDGKDLTKLS-----------------LKELRR----KVGLVFQNPDDQFFGPTVEEEV 97
Query: 173 K------SIEADAAEPRARRILAGLGF----------------------------TTIYI 198
+ + E R L +G I +
Sbjct: 98 AFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
Query: 199 ---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLD 235
P++ + E+++ K KT+++V+HD L + +I L+
Sbjct: 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLE 208
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 125 bits (315), Expect = 4e-32
Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 20/194 (10%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
V+ + ++T Y G K L+ V+F ++ L+GPNG GK+T L +L G L P GE+
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 394 R---KSPRLRIGKFDQHSG-----EHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LG 438
K + G L+P+ T E L +L+ L E++ + L
Sbjct: 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+FGL A+ +R LSGG K R+++A L++P++LILDEPT+ LD ES + E ++
Sbjct: 123 LFGLEDKANK-KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181
Query: 499 Y--QGG--VILVSH 508
+GG ++L +H
Sbjct: 182 LAKEGGVTILLSTH 195
Score = 47.7 bits (114), Expect = 8e-06
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
I+V N + + ++ G +GL+GPNG GKTTLL+ +A L P+S ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTSGEI 62
Query: 119 LYCEQEV 125
L +V
Sbjct: 63 LVLGYDV 69
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 121 bits (307), Expect = 8e-32
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
+ D+T Y GG +LE V+F + +A+VGPNG GKST L + G L P G +R
Sbjct: 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 398 ------RLRIGKFDQHSG-EHLFPDD------TPCEYLMKLFNLPYEKSRRQ-----LGM 439
R RIG Q + FP LF K+ + L
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF-RRLSKADKAKVDEALER 119
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
GL A I +LSGGQ+ RV LA + +PD+L+LDEP +D ++ + + E ++
Sbjct: 120 VGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 500 QG---GVILVSHD 509
+ +++V+HD
Sbjct: 179 RREGMTILVVTHD 191
Score = 49.8 bits (120), Expect = 7e-07
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+VE+ ++S G + + + ++ G +VGPNG GK+TLL+ I
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL 46
Score = 28.7 bits (65), Expect = 7.3
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 205 EIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241
E++R + T+LVV+HD + ++ L+ +
Sbjct: 173 ELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVAS 212
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 121 bits (306), Expect = 3e-31
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P++ + ++T Y G + +LE ++ ++ AL+GPNG GKST L + G L P+ GE
Sbjct: 2 MPMIEVENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 393 LR--------KSPRLRIGKFDQHSG-EHLFP---DDT---PCEYLMKLFNLPYEKSRR-- 435
++ + RLRIG Q S + FP D F +K +
Sbjct: 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 436 -----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
++GM I +LSGGQK RV LA NPD+L+LDEP +D+
Sbjct: 121 DEALERVGMED---LRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176
Query: 491 ALAEAIKNY--QG-GVILVSHD 509
+ + +K +G V++V+HD
Sbjct: 177 EIYDLLKELRQEGKTVLMVTHD 198
Score = 51.8 bits (125), Expect = 3e-07
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+VEN ++S + + +L + G L+GPNG GK+TLL+ I
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL 51
Score = 29.5 bits (67), Expect = 4.6
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 205 EIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242
++++ + KT+L+V+HD + +I L+ + L
Sbjct: 180 DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIAS 219
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 115 bits (291), Expect = 4e-30
Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 42/191 (21%)
Query: 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+V+F YPG K +L+ V+ + +VA+VGP+G GKST L LL P GE+
Sbjct: 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-- 60
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP------ 450
D L +L E R+ + Y P
Sbjct: 61 -------IDGVD----------------LRDLDLESLRKNIA------YVPQDPFLFSGT 91
Query: 451 IRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILV 506
IR+ LSGGQ+ R+A+A L +P ILILDE T+ LD E+ + EA++ G VI++
Sbjct: 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVI 151
Query: 507 SHDERLIRETD 517
+H IR+ D
Sbjct: 152 AHRLSTIRDAD 162
Score = 47.8 bits (115), Expect = 2e-06
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 60 IKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+ +N FS + + + +L I G + +VGP+G GK+TLL+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLK 46
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 115 bits (289), Expect = 4e-30
Identities = 63/181 (34%), Positives = 84/181 (46%), Gaps = 40/181 (22%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
+ +++F Y G L V+ L VALVGPNG GKST L + G L P GE+
Sbjct: 2 IENLSFRYGGRTALDN-VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL--- 57
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 457
I D + LP E+ RR++G + LSGG
Sbjct: 58 ---IDGKD-------------------IAKLPLEELRRRIGY-----------VPQLSGG 84
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDERLIR 514
Q+ RVALA L NPD+L+LDEPT+ LD S + L E ++ VI+V+HD L
Sbjct: 85 QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144
Query: 515 E 515
Sbjct: 145 L 145
Score = 66.5 bits (163), Expect = 6e-13
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120
++EN S G N +L + +G LVGPNG GK+TLLR IA L P+S ++L
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIA--GLLKPTSGEILI 58
Query: 121 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLT---------EVY-- 169
+++ + + R+ + + SG + R+ ++
Sbjct: 59 DGKDIAKLPLEEL-------RRRIGYVPQL-------SGGQRQRVALARALLLNPDLLLL 104
Query: 170 DELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICT 229
DE S +P +R L L + E+ +T+++V+HD
Sbjct: 105 DEPTS----GLDPASRERLLEL-----------LRELAEE-GRTVIIVTHDPELAELAAD 148
Query: 230 DIIHLD 235
+I L
Sbjct: 149 RVIVLK 154
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 120 bits (303), Expect = 8e-29
Identities = 104/374 (27%), Positives = 174/374 (46%), Gaps = 80/374 (21%)
Query: 213 TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT--LFKKMYVQKRKELTKEYELQEKQ 270
T++ V+HD+ FL+N+ I+ LD + ++GN++ L QK K L +EKQ
Sbjct: 212 TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL-----EQKAKRL----AQEEKQ 262
Query: 271 IREMKSQ-GMSKE--------KAERQHSHKA--------LKEQARKRVQKDDDDEPKELL 313
E Q + +E KA RQ KA L E+ +KR +E E+
Sbjct: 263 --EAARQKALKRELEWVRQSPKA-RQAKSKARLARYEELLSEEYQKR------NETNEI- 312
Query: 314 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGI 373
+I P P L V+ +++ + G ++L++ ++F L V ++GPNG
Sbjct: 313 -----FI-----PPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGA 361
Query: 374 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFN 427
GKST ++ G+ P+ G ++ +++ DQ S + L P+ T E ++K+ N
Sbjct: 362 GKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIKVGN 420
Query: 428 LPYE-KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
E SR +G F + LSGG++ R+ LA+ ++L+LDEPTN+LD+
Sbjct: 421 --REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478
Query: 487 ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK-----------KNIRKFNGDF 535
E++ AL EA+ + G +++SHD W L++ + F G+F
Sbjct: 479 ETLRALEEALLEFPGCAVVISHDR----------WFLDRIATHILAFEGDSQVEWFEGNF 528
Query: 536 DDYREKLLTSLGEA 549
+Y E LG
Sbjct: 529 QEYEEDKKRRLGAD 542
Score = 82.5 bits (205), Expect = 1e-16
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
+ LSGG++ RVAL L L PD+L+LDEPTN+LD ES+ L + + +Y G V+ V+HD
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219
Score = 41.3 bits (98), Expect = 0.001
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
++ V+ P K +L+ ++ +++ ++G NG GKST L ++ G +GE R +P
Sbjct: 9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68
Query: 398 RLRIG 402
+++G
Sbjct: 69 GIKVG 73
Score = 33.9 bits (79), Expect = 0.26
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR------ALAIP 113
I+ EN S S L + + + G G++GPNG GK+TL + I + + I
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG 384
Query: 114 SSIDLLYCEQEVEASDDS 131
++ L Y +Q +A D +
Sbjct: 385 ETVKLAYVDQSRDALDPN 402
Score = 32.8 bits (76), Expect = 0.59
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 89 GLVGPNGHGKTTLLRHIA 106
G++G NG GK+TLLR +A
Sbjct: 37 GVLGLNGAGKSTLLRIMA 54
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 111 bits (281), Expect = 4e-28
Identities = 70/214 (32%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
+++F YPG K L+ V+ ++ RV L+GPNG GKST L LL G L P GE+
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67
Query: 395 KSPRLRIGKFDQHSG------EHLFPDDTPCEYLM-KLFNLPYEKS------RRQLGMFG 441
S + + Q G + T + + L NL + L + G
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVG 127
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 499
L P +LSGGQK RVA+A + P+IL+LDEPT LD + L E +K
Sbjct: 128 LEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE 186
Query: 500 QGG--VILVSHDERLIRETDCELWALEKKNIRKF 531
+GG +I+V+HD L+ E + L+ I
Sbjct: 187 EGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220
Score = 55.7 bits (135), Expect = 1e-08
Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 66/226 (29%)
Query: 60 IKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
I+ EN S + +L+I G R L+GPNG GK+TLL+ + L P+S
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN--GLLKPTS--- 58
Query: 119 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL------ 172
EV + S++K+ ++L ++ + ++ D+QL V DE+
Sbjct: 59 ----GEVLVDG-----LDTSSEKSLLELRQKVGLVFQN--PDDQLFGPTVEDEVAFGLEN 107
Query: 173 KSIEADAAEPRARRILAGLGFT------------------------------------TI 196
+ + E R L +G T
Sbjct: 108 LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 197 YIPSSRVHEIMRTWKK-------TLLVVSHDQSFLNNICTDIIHLD 235
+ E++ KK T+++V+HD + ++ LD
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 109 bits (275), Expect = 2e-27
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
+ +++F Y G +L+ ++ L +AL G NG GK+T +L G + + G +
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAH 447
K R IG Q LF D E L+ L L E++ L L +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE 121
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVI 504
P LSGGQK R+A+A L+ D+LI DEPT+ LD ++++ + E I+ VI
Sbjct: 122 RHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVI 180
Query: 505 LVSHDERLI 513
+++HD +
Sbjct: 181 VITHDYEFL 189
Score = 39.9 bits (94), Expect = 0.002
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 62 VENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120
+EN S S KG E+ + +L + +G L G NG GKTTL + +A L SS +L
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA--GLIKESSGSILL 59
Query: 121 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN-QLRLTEVYDELKSIEADA 179
+ ++A + + D + +L + + E + LK ++ A
Sbjct: 60 NGKPIKAKERRKSIGYVMQDVDY-QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 180 AEPRARRILAG------------LGFTTIYI---PSS--------RVHEIMRTW---KKT 213
+ R L+G L + I P+S RV E++R K
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 214 LLVVSHDQSFLNNICTDIIHLD 235
++V++HD FL +C ++ L
Sbjct: 179 VIVITHDYEFLAKVCDRVLLLA 200
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 107 bits (269), Expect = 7e-27
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
+ +++ GY GG+ +L+ ++ ++ V ++GPNG GKST L L G L P+ GE+
Sbjct: 2 VENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI---- 56
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG-------MFGLPSYAHTIP 450
D L +L ++ R++ + GL A P
Sbjct: 57 -----LLDGKD----------------LASLSPKELARKIAYVPQALELLGLAHLADR-P 94
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILV 506
+LSGG++ RV LA P IL+LDEPT++LDI E ++ L + V++V
Sbjct: 95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154
Query: 507 SHD 509
HD
Sbjct: 155 LHD 157
Score = 55.1 bits (134), Expect = 7e-09
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+VEN S+ G + + +L I +G G++GPNG GK+TLL+ +A
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA 46
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 111 bits (280), Expect = 5e-26
Identities = 73/219 (33%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
P P L V+ YPG + L V+F + RVALVGP+G GKST LNLL G + P +
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 391 GELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY---EKSRRQ 436
G + S R +I QH LF T E + P + R
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHP--FLFAG-TIAENI--RLARPDASDAEIREA 431
Query: 437 LGMFGLPSYAHTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
L GL + +P LSGGQ R+ALA L + +L+LDEPT +LD
Sbjct: 432 LERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 487 ESIDALAEAIKNYQGG--VILVSHDERLIRETDCELWAL 523
E+ + EA++ G V+LV+H L D + L
Sbjct: 492 ETEAEVLEALRALAQGRTVLLVTHRLALAALAD-RIVVL 529
Score = 40.3 bits (95), Expect = 0.003
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGV-ELFHNANLQIASGRRYGLV 91
+ L + + K + ++ S++ G + + G R LV
Sbjct: 295 EALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALV 354
Query: 92 GPNGHGKTTLL 102
GP+G GK+TLL
Sbjct: 355 GPSGAGKSTLL 365
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 102 bits (258), Expect = 1e-25
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 46/191 (24%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
+ +++ Y L + ++ ++ L+GPNG GK+T + ++ G L P+ GE++
Sbjct: 3 VRNLSKRYGKKTAL-DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61
Query: 395 -------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH 447
+ + RIG + L+ + T E L
Sbjct: 62 KDIKKEPEEVKRRIGYLPEEPS--LYENLTVRENL------------------------- 94
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 504
LSGG K R+ALA+ L++P++LILDEPT+ LD ES E ++ ++
Sbjct: 95 -----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 505 LVSHDERLIRE 515
L SH
Sbjct: 150 LSSHILEEAER 160
Score = 57.4 bits (140), Expect = 1e-09
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+V N S + +L + G YGL+GPNG GKTTL++ I L P S
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDS 54
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 110 bits (277), Expect = 2e-25
Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 50/222 (22%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
PP + L +++F YP GK L +N + ALVG +G GKST LNLL G L P +G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 392 ELR-----------KSPRLRIGKFDQHSGEHLFP---------------DDTPCE----- 420
E+R ++ R +I Q+ +LF D+
Sbjct: 377 EIRVNGIDLRDLSPEAWRKQISWVSQNP--YLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
L++ P + +G G LSGGQ R+ALA L+ +L+LDEP
Sbjct: 435 GLLEFVPKP-DGLDTVIGEGG----------AGLSGGQAQRLALARALLSPASLLLLDEP 483
Query: 481 TNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRETDC 518
T +LD E+ + AL E K Q V++++H + D
Sbjct: 484 TAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAADADR 523
Score = 45.7 bits (109), Expect = 5e-05
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 48 SKRSTVDDNSVDIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
K ++ ++I +EN S G + NL I +G+ LVG +G GK+TLL +
Sbjct: 309 EKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368
Query: 107 TRALAIPSSIDL 118
I +
Sbjct: 369 GFLAPTQGEIRV 380
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 103 bits (258), Expect = 3e-25
Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
H+V+ YPGG L V+ + + L GP+G GK+T L LL G LTP++G++R
Sbjct: 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63
Query: 395 ----KSPRLRIGKFDQHSG-----EHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LG 438
+ ++ + G L PD T E + +++ + +R+ L
Sbjct: 64 EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEA 495
GL A P + LSGG++ RVA+A +N+P +L+ DEPT NLD E I L +
Sbjct: 124 QVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182
Query: 496 IKNYQGGVILVSHDERLIR 514
+ VI+ +HD L+
Sbjct: 183 LNKRGTTVIVATHDLSLVD 201
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ N S + GV H+ +L I G L GP+G GKTTLL+ +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLL 48
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 103 bits (259), Expect = 4e-25
Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 34/208 (16%)
Query: 340 DVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
+++ Y GG L+ V+ ++ VA+VGP+G GKST LN+L G P GE+R
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64
Query: 395 ----------KSPRLR---IGK-FDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKS 433
+ R IG F +L PD T P E++
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSF---NLLPDLTALENVELPLLLAGVPKKERRERA 121
Query: 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----I 489
L GL + P +LSGGQ+ RVA+A N+P I++ DEPT NLD E+ +
Sbjct: 122 EELLERVGLGDRLNHYP-SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 490 DALAEAIKNYQGGVILVSHDERLIRETD 517
+ L E K +++V+HD L D
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYAD 208
Score = 45.2 bits (108), Expect = 2e-05
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+++N S + G V+ +L I G +VGP+G GK+TLL + L P+S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG--LDRPTS 58
Query: 116 IDLLYCEQEVEASDDSA 132
++ ++ +
Sbjct: 59 GEVRVDGTDISKLSEKE 75
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 103 bits (260), Expect = 5e-25
Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+L + +++FGY GGK +L+ ++F + ++GPNG GKST L L G L P GE+
Sbjct: 1 MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 394 --------RKSPR---LRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLPYEKSR 434
SP+ ++ Q P L + LF P ++
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQ---SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE 116
Query: 435 RQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---- 486
L + GL A P+ +LSGG++ RV +A IL+LDEPT++LDI
Sbjct: 117 EIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 487 ESIDALAEAIKNYQGGVILVSHD 509
E ++ L + + V++V HD
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHD 198
Score = 54.5 bits (132), Expect = 3e-08
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN S G + + + I G G++GPNG GK+TLL+ +A
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA 49
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 101 bits (255), Expect = 1e-24
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
+V+ YPGG+ L V+F + V L GP+G GKST L L+ GE P +G++
Sbjct: 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD 65
Query: 395 --KSPRLRIGKFDQHSG-----EHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMF 440
+ I + G L PD T E +++ P + RR+ L +
Sbjct: 66 LSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLV 125
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--- 497
GL A +P LSGG++ RVA+A +N P +L+ DEPT NLD L+ I
Sbjct: 126 GLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD----PDLSWEIMRLF 180
Query: 498 ---NYQG-GVILVSHDERLIR 514
N G V++ +HD L+
Sbjct: 181 EEINRLGTTVLMATHDLELVN 201
Score = 32.2 bits (74), Expect = 0.56
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN S + G E + + I G L GP+G GK+TLL+ I
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI 48
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 106 bits (266), Expect = 4e-24
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 40/236 (16%)
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P+P + +V+F YPG K +L+ ++F ++ +VA+VGP+G GKST + LL
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
Query: 386 LTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY---- 430
P GE+ S R RIG Q LF + + N+
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP--LLFSGT-----IRE--NIALGRPD 429
Query: 431 ------EKSRRQLGMFG----LPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILIL 477
E++ + LP TI LSGGQ+ R+A+A L NP ILIL
Sbjct: 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL 489
Query: 478 DEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETDCELWALEKKNIRKF 531
DE T+ LD E+ + +A+K G ++++H I+ D + L+ I +
Sbjct: 490 DEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD-RIIVLDNGRIVER 544
Score = 34.3 bits (79), Expect = 0.16
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 36 ENFTVSQSSKASSKR--------STVDDNSVDIKVENFSLSAKGVE--------LFHNAN 79
E ++ Q + A+++R V+D +K S+ + V + + +
Sbjct: 290 EVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDIS 349
Query: 80 LQIASGRRYGLVGPNGHGKTTLLR 103
I G + +VGP+G GK+TL++
Sbjct: 350 FSIEPGEKVAIVGPSGSGKSTLIK 373
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 100 bits (252), Expect = 4e-24
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 335 VLGLHDVTFGYPGGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
++ L +V+ Y G L+ VN ++ VA+VGP+G GKST LNLL G P G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 392 ELR------------KSPRLR---IGK-FDQHSGEHLFPDDT-------PCEYLMKLFNL 428
E+ + +LR IG F +L PD T P K
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNF---NLLPDLTVLENVELPLLIAGKSAGR 117
Query: 429 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+ L + GL +LSGGQ+ RVA+A +NNP I++ DEPT NLD ++
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 489 ----IDALAEAIKNYQGGVILVSHDERLIRETD 517
++ L E K +I+V+HD L + D
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+++N + L + VE + NL+I +G +VGP+G GK+TLL + L P+S
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPTS 59
Query: 116 IDLLYCEQEVEASDDSA 132
++L +++ +
Sbjct: 60 GEVLINGKDLTKLSEKE 76
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 99.4 bits (248), Expect = 8e-24
Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--- 396
+VT YP G L+ +N + V LVGP+G GKST L L+ E P G +R +
Sbjct: 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64
Query: 397 ----PRLRIGKFDQHSG-----EHLFPDDTPCEYLMKLFNLPYEKSRR-------QLGMF 440
I + G L PD E + + R L +
Sbjct: 65 VSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV 124
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 498
GL +P +LSGG++ RVA+A +N+P ILI DEPT NLD ++ + +K N
Sbjct: 125 GLSHKHRALP-AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 499 YQGGVILVS-HDERLIRETDCELWALEK 525
G ++V+ H + L+ T + ALE+
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALER 211
Score = 33.5 bits (77), Expect = 0.19
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
G N+ I++G LVGP+G GK+TLL+ I L P+S
Sbjct: 13 GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTS 55
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 105 bits (264), Expect = 8e-24
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVG 369
++L+ P E + P L + +V+F Y P +LE ++ + +VA+VG
Sbjct: 448 DILDTPPEQEGDKTLIHLPKLQGEIE-FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVG 506
Query: 370 PNGIGKSTFLNLLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTP 418
+G GKST L LL G P +G + S R ++G Q LF
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP--FLFSGSIR 564
Query: 419 CEYLMKLFNLPYEKSRRQLGMFG-------LPSYAHTIPIRD----LSGGQKARVALAEL 467
+ E+ + G LP T P+ + LSGGQ+ R+ALA
Sbjct: 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT-PVGEGGANLSGGQRQRLALARA 623
Query: 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
L+ P IL+LDE T+ LD E+ + + + G VI+++H IR D
Sbjct: 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSAD 675
Score = 41.8 bits (99), Expect = 0.001
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+I+ EN F + + +L+I G + +VG +G GK+TLL+
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 98.8 bits (247), Expect = 2e-23
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+L + V+ + G +VL E +N ++ VA++GP+G GKST L L+ G P GE
Sbjct: 1 MALLEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 393 LR------KSPRLRIG-KFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQLG 438
+ P IG F + + L P T E K E+++ L
Sbjct: 60 VLLDGRPVTGPGPDIGYVFQEDA---LLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
+ GL + P LSGG + RVA+A P +L+LDEP LD E D L
Sbjct: 117 LVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175
Query: 495 AIKNYQGGVILVSHD 509
+ + V+LV+HD
Sbjct: 176 LWEETRKTVLLVTHD 190
Score = 47.2 bits (113), Expect = 7e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++E S S GVE+ + NL + G ++GP+G GK+TLLR IA
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 95.7 bits (239), Expect = 5e-23
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 336 LGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L + +V+F YPG + +L V+F ++ +A++GP+G GKST L+ G L P G +R
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 395 ----KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQLGMFGLPSYAH 447
+ + H G YL +LF +
Sbjct: 61 LDGADISQWDPNELGDHVG-----------YLPQDDELF-------------------SG 90
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VI 504
+I LSGGQ+ R+ LA NP IL+LDEP ++LD+E AL +AI + I
Sbjct: 91 SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI 150
Query: 505 LVSHDERLIRETD 517
+++H + D
Sbjct: 151 VIAHRPETLASAD 163
Score = 39.5 bits (93), Expect = 0.001
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 60 IKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN S G E + N + I G ++GP+G GK+TL R I
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 98.0 bits (245), Expect = 5e-23
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 39/219 (17%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P+L + ++ + GG + V+ + V L+GPNG GK+T NL+ G P+ G
Sbjct: 1 TTPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59
Query: 392 EL--------RKSPRLR----IGKFDQHSGEHLFPDDTPCEYLM----------KLFNLP 429
+ P I + Q + LFP T E + L P
Sbjct: 60 TVIFRGRDITGLPPHRIARLGIARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRP 117
Query: 430 ---------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
E++R L GL A P +LS GQ+ R+ +A P +L+LDEP
Sbjct: 118 RARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALATQPKLLLLDEP 176
Query: 481 TNNLDIESIDALAEAIK--NYQGG--VILVSHDERLIRE 515
L+ E + LAE I+ +GG ++L+ HD +L+
Sbjct: 177 AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
Score = 42.9 bits (102), Expect = 2e-04
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+V S G+ ++ +L++ G GL+GPNG GKTTL
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF 47
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 96.8 bits (242), Expect = 9e-23
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG------ 391
L +T + GG+ +L+ V+ + +A++GP+G GKST L L+ G L P+ G
Sbjct: 3 LRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61
Query: 392 ---------ELRKSPRLRIGKFDQHSGEHLFPDDTPCE----YLMKLFNLPYEKSRRQ-- 436
EL + R R+G Q LF T E L + L E+ R
Sbjct: 62 EDISGLSEAELYRL-RRRMGMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
L GL P +LSGG K RVALA +P++L+ DEPT LD + + +
Sbjct: 119 EKLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD 177
Query: 495 AIKNYQG----GVILVSHD 509
I++ + I+V+HD
Sbjct: 178 LIRSLKKELGLTSIMVTHD 196
Score = 41.7 bits (99), Expect = 5e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ + S G + +L + G ++GP+G GK+TLLR I
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV 47
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 101 bits (254), Expect = 1e-22
Identities = 70/207 (33%), Positives = 96/207 (46%), Gaps = 39/207 (18%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P L L D++ GYPG +L+ V+ L RVA++GP+G GKST L L G L P +GE+
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 394 -----------RKSPRLRIGKFDQHSGEHLF------------PDDTPCEYLMKLFNLPY 430
+ R R+ Q + HLF PD T E L
Sbjct: 393 TLDGVPVSSLDQDEVRRRVSVCAQDA--HLFDTTVRENLRLARPDATDEELWAAL----- 445
Query: 431 EKSRRQLGMF--GLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
R L + LP T+ LSGG++ R+ALA L + IL+LDEPT +LD
Sbjct: 446 --ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD 503
Query: 486 IESIDALAEAIKNYQGG--VILVSHDE 510
E+ D L E + G V+L++H
Sbjct: 504 AETADELLEDLLAALSGRTVVLITHHL 530
Score = 37.3 bits (87), Expect = 0.019
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111
+ +L + G R ++GP+G GK+TLL L
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLL-ATLAGLLD 386
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 94.9 bits (237), Expect = 1e-22
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L +V+ Y VL + V+ ++ VAL+GP+G GKST L + G P+ G +
Sbjct: 3 LKNVSKRYGQKTVLND-VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61
Query: 395 ---KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
+ + G + + F L + + GL
Sbjct: 62 EDLTDLEDELPPLRRRIG-----------MVFQDFALFPHLTVLENIALGL--------- 101
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE---SIDALAEAIKNYQG-GVILVS 507
SGGQ+ RVALA +PD+L+LDEPT+ LD + AL ++++ G V+LV+
Sbjct: 102 ---SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 508 HD 509
HD
Sbjct: 159 HD 160
Score = 54.1 bits (131), Expect = 1e-08
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 53/202 (26%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N S + ++ +L I +G L+GP+G GK+TLLR IA L P S +L
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA--GLEEPDSGSIL 58
Query: 120 YCEQEVEASDD------SAVNIV---------LSADKNRVKLLKECSKLERDESGDNQLR 164
+++ +D + +V L+ +N L SG Q R
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL----------SGGQQQR 108
Query: 165 LT---------EV--YDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKT 213
+ +V DE S A +P RR + L + + T
Sbjct: 109 VALARALAMDPDVLLLDEPTS----ALDPITRREVRAL-----------LKSLQAQLGIT 153
Query: 214 LLVVSHDQSFLNNICTDIIHLD 235
+++V+HD + ++ L
Sbjct: 154 VVLVTHDLDEAARLADRVVVLR 175
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 96.4 bits (241), Expect = 1e-22
Identities = 64/202 (31%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP- 397
GG V L+ V+F + L+GPNG GK+T NL+ G L P G + P
Sbjct: 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH 70
Query: 398 ---RLRIG-KFDQHSGEHLFPDDTPCEYLM---------KLFNLPYEKSRRQ-------- 436
RL IG F Q LFP+ T E +M L + R+
Sbjct: 71 EIARLGIGRTF-QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEEL 127
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L GL A P +LS GQ+ R+ +A +P +L+LDEP L+ E + LAE I
Sbjct: 128 LERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 497 K--NYQG-GVILVSHDERLIRE 515
+ +G V+LV HD ++
Sbjct: 187 RELRERGITVLLVEHDMDVVMS 208
Score = 42.4 bits (101), Expect = 2e-04
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++V + G+ + + + G +GL+GPNG GKTTL ++ + L P+S +L
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLR-PTSGSVL 58
Query: 120 YCEQEV 125
+ +++
Sbjct: 59 FDGEDI 64
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 95.3 bits (238), Expect = 2e-22
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L ++ Y G L+ ++ ++ +AL+GP+G GK+T L L+ G P+ GE+
Sbjct: 3 LKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61
Query: 395 -----KSPRLR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMF 440
P R IG F ++ LFP T E + +KL +P + R + L +
Sbjct: 62 RDVTGVPPERRNIGMVFQDYA---LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV 118
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL + P +LSGGQ+ RVALA P +L+LDEP + LD + + L E +K Q
Sbjct: 119 GLEGLLNRYP-HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 501 GG----VILVSHD 509
I V+HD
Sbjct: 178 RELGITTIYVTHD 190
Score = 51.0 bits (123), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++ S + V + +L + G L+GP+G GKTTLLR IA L P S ++L
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA--GLERPDSGEIL 58
Query: 120 YCEQEV 125
++V
Sbjct: 59 IDGRDV 64
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 94.4 bits (235), Expect = 3e-22
Identities = 63/191 (32%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------R 394
YPGG +L+ +NF + +AL+G NG GKST L L G L P G + R
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 395 KS---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGLPSY 445
K R R+G Q + LF D + NL E RR L G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL 120
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-G 502
P LSGG+K RVA+A PD+L+LDEPT LD + + ++ +G
Sbjct: 121 RER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 503 VILVSHDERLI 513
V++ +HD L
Sbjct: 180 VVISTHDVDLA 190
Score = 40.9 bits (96), Expect = 6e-04
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
G E+ N G L+G NG GK+TLL H+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLN 39
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 94.5 bits (236), Expect = 5e-22
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 345 YPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---------- 393
Y G ++ ++ + L+G NG GK+T L +L GEL P G
Sbjct: 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSY 445
RK+ R +G Q LF + T E+L + + + L + GL
Sbjct: 70 RKAARQSLGYCPQFDA--LFDELTVREHLR-FYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--V 503
A+ R LSGG K +++LA + P +L+LDEPT+ LD S A+ + I + G +
Sbjct: 127 ANK-RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSI 185
Query: 504 ILVSHD 509
IL +H
Sbjct: 186 ILTTHS 191
Score = 30.6 bits (70), Expect = 1.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 89 GLVGPNGHGKTTLLRHIA 106
GL+G NG GKTT L+ +
Sbjct: 32 GLLGHNGAGKTTTLKMLT 49
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 94.5 bits (236), Expect = 5e-22
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 29/197 (14%)
Query: 336 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
L + +V+ Y GG LE ++ ++ VALVGP+G GKST L ++ G P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 393 LR------KSPRLRIG-KFDQHSGEHLFP-----DDTPCEYLMKLFNLPYEKSRRQ---- 436
+ P G F Q + L P D+ ++L +P ++R +
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDA---LLPWLTVLDN--VALGLELQGVPKAEARERAEEL 115
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESI-DAL 492
L + GL + + P LSGG + RVALA +PD+L+LDEP + LD E + + L
Sbjct: 116 LELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 493 AEAIKNYQGGVILVSHD 509
+ + V+LV+HD
Sbjct: 175 LDIWRETGKTVLLVTHD 191
Score = 43.2 bits (103), Expect = 1e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++V N + V + +L + G LVGP+G GK+TLLR IA
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 95.4 bits (238), Expect = 5e-22
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P P++ + VT + G +V+L+ V+ + +A++G +G GKST L L+ G L P+KG
Sbjct: 5 PEPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63
Query: 392 ELR--------------KSPRLRIGKFDQHSGEHLFPDDTPCE----YLMKLFNLPYEKS 433
E+ R R+G Q LF T E L + LP
Sbjct: 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGA--LFSSLTVFENVAFPLREHTKLPESLI 121
Query: 434 RRQ----LGMFGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
R L + GL + A P +LSGG + RVALA +P++L LDEPT+ LD S
Sbjct: 122 RELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180
Query: 489 IDALAEAIKNYQ----GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540
+ E I+ VI+V+HD + + L + G ++
Sbjct: 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV-IAEGTPEELLA 235
Score = 38.7 bits (91), Expect = 0.004
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+V + S + +L + G ++G +G GK+TLLR I
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 93.4 bits (233), Expect = 9e-22
Identities = 63/184 (34%), Positives = 84/184 (45%), Gaps = 36/184 (19%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
GG+VL ++F L + L GPNG GK+T L L+ G L P G +++ D
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG------TIKLDGGDI 66
Query: 407 HSGEHLFPDDTPCEYL-----MKLF-----NLPYEKSRRQLG-----------MFGLPSY 445
+ C YL MK NL E LG GL
Sbjct: 67 DDPDVA----EACHYLGHRNAMKPALTVAENL--EFWAAFLGGEELDIAAALEAVGLAPL 120
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGV 503
AH +P LS GQK RVALA L ++N I ILDEPT LD ++ AE I+ + QGG+
Sbjct: 121 AH-LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 504 ILVS 507
++ +
Sbjct: 180 VIAA 183
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
E+ + G LF + +A+G L GPNG GKTTLLR IA L P++ +
Sbjct: 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA--GLLPPAAGTIKLD 62
Query: 122 EQEVEASD 129
+++ D
Sbjct: 63 GGDIDDPD 70
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 92.8 bits (231), Expect = 9e-22
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G ++L E ++F L+ + + GPNGIGK+T L +L G L P+ GE+R + + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT-ALAEQRD 69
Query: 407 HSGEHLF---------PDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIR 452
++ P+ + E L F ++ L GL + +P
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLH--FWAAIHGGAQRTIEDALAAVGLTGFED-LPAA 126
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 509
LS GQ+ R+ALA L L+ + ILDEPT LD + LA ++ + G V+L +H
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186
Query: 510 ERLIRET 516
+ + E
Sbjct: 187 DLGLVEA 193
Score = 40.4 bits (95), Expect = 8e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N + S LF + + +G + GPNG GKTTLLR +A L P S
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA--GLLRPDS 54
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 92.3 bits (230), Expect = 5e-21
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 26/206 (12%)
Query: 334 PVLGLHDVTFGYPGGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L + +++ Y GGK L V+ ++ + +VG +G GKST LL G P+
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 391 GELR----KSPRLRIGKFD--------QHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQ- 436
G + + K Q L P T L + L KS+++
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 437 ---LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ES 488
L GLP S+ P +LSGGQ+ R+A+A + P +LILDEPT+ LD+ +
Sbjct: 122 AELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
Query: 489 IDALAEAIKNYQGGVILVSHDERLIR 514
++ L E K + +SHD L+
Sbjct: 181 LNLLLELKKERGLTYLFISHDLALVE 206
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ V N S+ G +N +L+I G G+VG +G GK+TL R +A
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 91.9 bits (229), Expect = 8e-21
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 36/215 (16%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
++ + +++ YPGG L+ VN ++ VA++GP+G GKST L L G + P GE+
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 394 --------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----------KLFNL 428
+ R IG Q L P + E ++ LF L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 429 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
++ + Q L G+ A+ LSGGQ+ RVA+A + P I++ DEP +L
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 485 DIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
D ES +D L + + VI+ H L ++
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKK 213
Score = 45.3 bits (108), Expect = 3e-05
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+V+N S + G + + NL+I G ++GP+G GK+TLLR +
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLN 51
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 87.4 bits (217), Expect = 9e-21
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 376 STFLNLLKGELTPNKGEL------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
ST L L+ G L P G + RK R RIG Q LFP+ T E L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENLF 58
Query: 424 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479
F L +++ + L GLP + P+ LSGGQK RVA+A L P +L+LDE
Sbjct: 59 --FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDE 116
Query: 480 PTN 482
PT
Sbjct: 117 PTA 119
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 89.3 bits (222), Expect = 2e-20
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGK 403
G + L ++F L+ + + GPNG GK+T L +L G L P+ GE+ + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72
Query: 404 FDQHS---GEH--LFPDDTPCEYL--MKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDL 454
+ Q G + + T E L + F+ L GL +P+ L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQL 131
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDER 511
S GQ+ RVALA L L+ + ILDEP LD E + L + G V+L +H
Sbjct: 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN S LF + + + +G + GPNG GKTTLLR +A
Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILA 49
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 89.2 bits (222), Expect = 2e-20
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSP 397
G K +L+ ++ + +GPNG GK+T + ++ G + P+ GE+
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70
Query: 398 RLRIGK-------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 450
RIG + + L +L + ++ L + GL A
Sbjct: 71 LRRIGALIEAPGFYPNLTARENL------RLLARLLGIRKKRIDEVLDVVGLKDSAKK-K 123
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 507
++ S G K R+ +A L NPD+LILDEPTN LD + I L E I + QG +L+S
Sbjct: 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLIS 182
Score = 46.1 bits (110), Expect = 1e-05
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+K + + + + + +L + G YG +GPNG GKTT ++ I
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL 47
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 88.7 bits (220), Expect = 3e-20
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G+ L ++F L + + GPNG GK+T L +L G P G + + + D
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 407 HSGEHLFPDDTPC--EYLMKLFNLPY-------EKSRRQLGMFGLPSYAHTIPIRDLSGG 457
+ L+ P L L NL + E+ L GL + P+ LS G
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAG 129
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVSH-----D 509
Q+ RVALA L L+ + ILDEPT LD + AEA+ + +GG V+L +H
Sbjct: 130 QQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189
Query: 510 ERLIRETD 517
E RE D
Sbjct: 190 EAGARELD 197
Score = 39.0 bits (91), Expect = 0.003
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
+ + G LF + +A+G + GPNG GKTTLLR +A L+ P + +L
Sbjct: 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILA--GLSPPLAGRVLLN 60
Query: 122 EQEVEASDDS 131
++ DS
Sbjct: 61 GGPLDFQRDS 70
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 93.9 bits (234), Expect = 4e-20
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 31/223 (13%)
Query: 322 KFRFPNPPYLPPP-VLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 379
+ FP+ L L +V+F YPG + L+ N L +VA++G +G GKST L
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
Query: 380 NLLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428
LL G P +G + ++ R I Q HLF T + L +L N
Sbjct: 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV--HLF-SGTLRDNL-RLANP 437
Query: 429 --PYEKSRRQLGMFGLPSYAHTIPI----------RDLSGGQKARVALAELTLNNPDILI 476
E+ L GL + P R LSGG++ R+ALA L++ + +
Sbjct: 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497
Query: 477 LDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
LDEPT LD + + + + G +++V+H R + D
Sbjct: 498 LDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540
Score = 44.2 bits (105), Expect = 1e-04
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 41 SQSSKASSKRSTVDDNSVDIKVENFSLSAKGVEL--FHNANLQIASGRRYGLVGPNGHGK 98
Q + + +++ N S + G + N NL +A G + ++G +G GK
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377
Query: 99 TTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133
+TLL + A P + E+ + D+ A+
Sbjct: 378 STLL-QLLAGAW-DPQQGSITLNGVEIASLDEQAL 410
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 87.6 bits (218), Expect = 9e-20
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 24/170 (14%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNKG--- 391
L L ++T Y + L L + + L+GPNG GK+T + +L P+ G
Sbjct: 1 LQLENLTKRYGKKRAL---DGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 392 ----ELRKSP---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----L 437
++ K P R RIG Q G ++P+ T E Y+ L +P ++ + + L
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+ L A I LSGG + RV +A+ + +P ILI+DEPT LD E
Sbjct: 116 ELVNLGDRAKK-KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Score = 49.5 bits (119), Expect = 1e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+++EN + +L + G YGL+GPNG GKTTL+R +AT L PSS +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILAT--LTPPSSGTIR 57
Query: 120 YCEQEV 125
Q+V
Sbjct: 58 IDGQDV 63
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 87.6 bits (218), Expect = 1e-19
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 338 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG----- 391
+V+F YP ++ L+ V+ + +VA++G G GKST L LL G P G
Sbjct: 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64
Query: 392 ----------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG--- 438
+LR+ IG Q LF T + + P R L
Sbjct: 65 GTDIRQLDPADLRR----NIGYVPQDV--TLF-YGTLRDNIT--LGAPLADDERILRAAE 115
Query: 439 MFGLPSYAHTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+ G+ + + P R LSGGQ+ VALA LN+P IL+LDEPT+ +D+ S
Sbjct: 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175
Query: 489 IDALAEAIKNYQGG--VILVSHDERLIRETD 517
+ L E ++ G +I+++H L+ D
Sbjct: 176 EERLKERLRQLLGDKTLIIITHRPSLLDLVD 206
Score = 38.7 bits (91), Expect = 0.004
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N +L I +G + ++G G GK+TLL+ +A L P+S
Sbjct: 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA--GLYKPTS 58
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 87.2 bits (217), Expect = 2e-19
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 28/193 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----------KGELTPNKGEL 393
G K +L+ ++ ++ V ++GP+G GKST L N L GE +K ++
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFNLP----YEKSRRQLGMFGLPSY 445
K R ++G Q +LFP T +K+ L EK+ L GL
Sbjct: 73 LKL-RRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK 129
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-G 502
A P + LSGGQ+ RVA+A +P +++ DEPT+ LD E + + + +K+ +G
Sbjct: 130 ADAYPAQ-LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 188
Query: 503 VILVSHDERLIRE 515
+I+V+H+ RE
Sbjct: 189 MIIVTHEMGFARE 201
Score = 42.5 bits (101), Expect = 3e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+++N S S E+ +L + G ++GP+G GK+TLLR
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLR 46
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 86.1 bits (213), Expect = 3e-19
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 328 PPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387
P + PP+L H + F V ++F +D + + G NG GK+T L +L G L
Sbjct: 4 PLHTAPPLLAAHALAFSRNEEPVF-GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62
Query: 388 PNKGEL-------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---- 436
G++ + R R + H L D + E L L L ++++
Sbjct: 63 VESGQIQIDGKTATRGDRSRFMAYLGHLPG-LKADLSTLENLHFLCGLHGRRAKQMPGSA 121
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L + GL Y T+ +R LS GQK R+ALA L L+ + +LDEP NLD+E I + I
Sbjct: 122 LAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
Query: 497 KNY---QGGVILVSH 508
+ G ++ +H
Sbjct: 181 SAHLRGGGAALVTTH 195
Score = 28.7 bits (64), Expect = 6.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 92 GPNGHGKTTLLRHIA 106
G NG GKTTLLR +A
Sbjct: 44 GDNGAGKTTLLRVLA 58
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 86.7 bits (215), Expect = 4e-19
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 18/182 (9%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 400
V+FG + +L V+ L + L+GPNG GKST + ++ G + P++G ++++ +LR
Sbjct: 12 VSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLR 68
Query: 401 IGKFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI--PIRDLS 455
IG Q L+ D T ++L P K L H I P++ LS
Sbjct: 69 IGYVPQK----LYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQAGHLIDAPMQKLS 122
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG----GVILVSHDER 511
GG+ RV LA LN P +L+LDEPT +D+ AL + I + V++VSHD
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182
Query: 512 LI 513
L+
Sbjct: 183 LV 184
Score = 35.5 bits (82), Expect = 0.049
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ +EN S+S + + +L++ G+ L+GPNG GK+TL+R
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVR 48
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 85.4 bits (212), Expect = 9e-19
Identities = 59/207 (28%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------ 393
+V F Y K +L+ +NF + VA+VGP G GK+T +NLL P KG++
Sbjct: 7 NVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66
Query: 394 -----RKSPRLRIGKFDQHSGEHLFPD--------------DTPCEYLMKLFNLPYEKSR 434
RKS R IG Q + LF D K +
Sbjct: 67 IRDISRKSLRSMIGVVLQDT--FLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMK 124
Query: 435 RQLGMFGLPSYAHTIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
G Y + +LS G++ +A+A L +P ILILDE T+N+D E+ +
Sbjct: 125 LPNG------YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 493 AEAIKNYQGG--VILVSHDERLIRETD 517
EA++ G I+++H I+ D
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNAD 205
Score = 41.4 bits (98), Expect = 6e-04
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 59 DIKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+I+ EN + S + + + N I G +VGP G GKTTL+
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLIN 47
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 89.2 bits (222), Expect = 1e-18
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 49/233 (21%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVL-G---LHDVTFGYPG-GKVLLEKVNFGLDMESRV 365
EL++ P E R +L P L G +V+F YPG L+ V+ + +V
Sbjct: 440 ELMQLPVE-----RPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKV 494
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD--TPCEYLM 423
A++G G GKST L LL G P +G + + D + P D Y+
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEG------SVLLDGVDIR---QIDPADLRRNIGYVP 545
Query: 424 K---LF------NL----PY---EKSRRQLGMFGLPSYAHTIPI----------RDLSGG 457
+ LF N+ PY E+ R + G+ + P R LSGG
Sbjct: 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 508
Q+ VALA L +P IL+LDEPT+ +D S + + +K + G ++LV+H
Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658
Score = 39.5 bits (93), Expect = 0.005
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 17 SKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSV--DIKVENFSLSAKGVE- 73
++YQQ +AL Q DEL + + + + +I+ N S + G E
Sbjct: 426 TRYQQAKTAL---QSLDEL----MQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET 478
Query: 74 -LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
N +L I G + ++G G GK+TLL+ +
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 83.7 bits (208), Expect = 3e-18
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 52/222 (23%)
Query: 335 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG------- 384
+L + +++ +P G L+ V+F + + LVG +G GKST + G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 385 -------ELTPNKGELRKSPRLRIGKFDQHS----------GEHLFPDDTPCEYLMKLFN 427
+L LRK R I Q GE + E L
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI------AEPLRIHGK 114
Query: 428 LPYEKSRRQLGM-----FGLPS-----YAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
L +++R++ + GLP Y H +LSGGQ+ RVA+A NP +LI
Sbjct: 115 LSKKEARKEAVLLLLVGVGLPEEVLNRYPH-----ELSGGQRQRVAIARALALNPKLLIA 169
Query: 478 DEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
DEPT+ LD+ +D L + + ++ ++HD ++ +
Sbjct: 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211
Score = 40.6 bits (96), Expect = 0.001
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 60 IKVENFSLS----AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
++V+N S+S V+ + + I G GLVG +G GK+TL R I L P+S
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL--GLLKPTS 59
Query: 116 IDLLYCEQEVEASDDS 131
+++ +++
Sbjct: 60 GSIIFDGKDLLKLSRR 75
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 83.8 bits (208), Expect = 3e-18
Identities = 66/227 (29%), Positives = 93/227 (40%), Gaps = 76/227 (33%)
Query: 340 DVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR 398
+VTF YPG G +L ++ + VALVGP+G GKST +NL+ PR
Sbjct: 5 NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI--------------PR 50
Query: 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----------------FG 441
+D SG L +Y L +L RRQ+G+ +G
Sbjct: 51 F----YDVDSGRILIDGHDVRDY--TLASL-----RRQIGLVSQDVFLFNDTVAENIAYG 99
Query: 442 LP-------------SYAHTI----------PIRD----LSGGQKARVALAELTLNNPDI 474
P + AH I + LSGGQ+ R+A+A L +P I
Sbjct: 100 RPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETD 517
LILDE T+ LD ES + A++ +++H RL I D
Sbjct: 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAH--RLSTIENAD 204
Score = 39.1 bits (92), Expect = 0.004
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
V+ K F G + + +L I +G LVGP+G GK+TL+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV 45
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 84.1 bits (208), Expect = 5e-18
Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSP 397
D+ + Y G K L +NF SR+A++GPNG GKST G L P G +R P
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS------RRQLGMFGL 442
R +G Q+ + +F + NL ++ L M GL
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KN 498
+P LSGG+K RVA+A + P +L+LDEPT LD + + L + + +
Sbjct: 128 EELRDRVP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186
Query: 499 YQGGVILVSHDERLIRETDCELWALEKKNI 528
Y VI +H L+ E ++ ++K I
Sbjct: 187 YGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
Score = 33.2 bits (76), Expect = 0.31
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 60 IKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
I+ + S G E +N N R ++GPNG GK+TL RH
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRH 49
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 82.4 bits (204), Expect = 7e-18
Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 36/209 (17%)
Query: 335 VLGLHDV--TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
++ +H + T G G++ +L+ V + VA+VGP+G GKST L +L G P+ G
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65
Query: 392 ELR------------KSPRLRIGKFDQHSGE-----HLFPDDT-------PCEYLMKLFN 427
E+R LR +H G HL P+ T P E +
Sbjct: 66 EVRLLGQPLHKLDEDARAALR----ARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121
Query: 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
++ L GL P LSGG++ RVALA PD+L DEPT NLD
Sbjct: 122 DSRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 488 SIDALAEAI--KNYQGG--VILVSHDERL 512
+ D +A+ + N + G ++LV+HD +L
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQL 209
Score = 35.8 bits (83), Expect = 0.034
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 60 IKVENFSLS----AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
I+V + S + + + L + G +VGP+G GK+TLL
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLL 53
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 81.8 bits (203), Expect = 1e-17
Identities = 55/216 (25%), Positives = 81/216 (37%), Gaps = 63/216 (29%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
L D+ Y G K L+ ++ + AL+GP+G GKST L LL G
Sbjct: 3 LRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA----- 56
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-FGLP-----------SY 445
GE L + + + L RR++GM F P +Y
Sbjct: 57 --------PDEGEVLLDGKDIYDLDVDVLEL-----RRRVGMVFQKPNPFPGSIYDNVAY 103
Query: 446 A---HTI---------------------------PIRDLSGGQKARVALAELTLNNPDIL 475
H I LSGGQ+ R+ LA N P++L
Sbjct: 104 GLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163
Query: 476 ILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHD 509
+LDEPT+ LD S + E I + +++V+H+
Sbjct: 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
Score = 47.9 bits (115), Expect = 3e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I++ + ++ + +L I G L+GP+G GK+TLLR
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLR 44
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 81.6 bits (202), Expect = 2e-17
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL- 399
L+ ++F ++ V +GPNG GK+T L +L G L P GE+R + +
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 400 -RIGK-FDQHSGEHLFPDDTPCE--YLMK-LFNLPYEKSRRQLG----MFGLPSYAHTIP 450
RIG F Q + L+ D + YL+ +++LP + +++L + L T P
Sbjct: 94 RRIGVVFGQKT--QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-P 150
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 506
+R LS GQ+ R +A L+ P+IL LDEPT LD+ + + + +K Y V+L
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 507 SHD 509
SH
Sbjct: 211 SHY 213
Score = 35.4 bits (82), Expect = 0.054
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
VE + I G G +GPNG GKTT L+
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLK 65
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 81.0 bits (201), Expect = 2e-17
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 29/194 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGELR------KSP 397
G +L+ ++ + V ++GP+G GKST L NLL+ P+ G +
Sbjct: 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKLTDD 67
Query: 398 RLRIGKFDQHSGE-----HLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPS 444
+ I + Q G +LFP T E + K+ + E++ L GL
Sbjct: 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD 127
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG- 502
A P LSGGQ+ RVA+A NP +++ DEPT+ LD E + + + +K+ + G
Sbjct: 128 KADAYP-AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM 186
Query: 503 -VILVSHDERLIRE 515
+++V+H+ RE
Sbjct: 187 TMVVVTHEMGFARE 200
Score = 36.0 bits (84), Expect = 0.027
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+++N S + +L + G ++GP+G GK+TLLR I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI 46
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 81.0 bits (201), Expect = 4e-17
Identities = 62/202 (30%), Positives = 82/202 (40%), Gaps = 53/202 (26%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSP 397
GG+ LL+ V+ L VA++GPNG GKST L L GEL+P+ GE+R
Sbjct: 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPA 72
Query: 398 RL--RIGKFDQHSGEHL-FPDDTPCEYLMKLFN---------LPYEKSRRQ--------L 437
L R QHS L FP F P+ SR + L
Sbjct: 73 ELARRRAVLPQHS--SLSFP-----------FTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARV----ALAELTLNNPD--ILILDEPTNNLDI----E 487
L A LSGG++ RV LA+L + L+LDEPT+ LD+
Sbjct: 120 AQVDLAHLAGR-DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 488 SIDALAEAIKNYQGGVILVSHD 509
+ + VI+V HD
Sbjct: 179 VLRLARQLAHERGLAVIVVLHD 200
Score = 50.9 bits (123), Expect = 5e-07
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ N S+ G L + +L + G ++GPNG GK+TLLR ++
Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS 49
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 78.7 bits (195), Expect = 4e-17
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 39/183 (21%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ L +++ P G+VLL+ ++F + R+ + GP+G GKS+ L L P
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWP------- 52
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYL-----MKLFNLPYEKSRRQLGMFGLPSYAHTIP 450
G+ GE L +L + L L R QL Y P
Sbjct: 53 ---WGSGRIGMPEGEDLL-------FLPQRPYLPLGTL-----REQL------IY----P 87
Query: 451 IRD-LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
D LSGG++ R+A A L L+ P + LDE T+ LD ES D L + +K VI V H
Sbjct: 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147
Query: 510 ERL 512
L
Sbjct: 148 PSL 150
Score = 36.0 bits (84), Expect = 0.017
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++EN SL+ G L + + +I G R + GP+G GK++L R +A
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 82.3 bits (204), Expect = 5e-17
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P P L + +V+ + G ++ ++ + V L+GP+G GK+T L ++ G P+ G
Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 392 ELR--------KSPRLR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ-- 436
E+ P R IG F ++ LFP T E + +K+ + +
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYA---LFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 437 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493
L + GL +A P LSGGQ+ RVALA + P +L+LDEP + LD + + +
Sbjct: 118 EEALELVGLEGFADRKP-HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 494 EAIKNYQG----GVILVSHD 509
+ +K Q + V+HD
Sbjct: 177 KELKELQRELGITFVYVTHD 196
Score = 46.5 bits (111), Expect = 2e-05
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ N S S + +L I G L+GP+G GKTTLLR IA
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 79.9 bits (198), Expect = 5e-17
Identities = 68/205 (33%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRL 399
G G L+ V+F + R+ L+G NG GKST L LL G P+ G + R S L
Sbjct: 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL 89
Query: 400 RIGKFDQHSGEHLFPDDTPCE--YLMKLFNLPYEKSRRQLG-------MF-GLPSYAHTI 449
+G G + P+ T E YL SR+++ F L +
Sbjct: 90 GLG-----GGFN--PELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSELGDFIDL- 138
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVIL 505
P++ S G KAR+A A T PDIL++DE D L E +K VIL
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVIL 197
Query: 506 VSHDERLIRET-DCELWALEKKNIR 529
VSHD I+ D L LEK IR
Sbjct: 198 VSHDPSSIKRLCDRALV-LEKGKIR 221
Score = 47.5 bits (114), Expect = 6e-06
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGP 93
ELEN + S + S + + ++ G R GL+G
Sbjct: 2 ELENVSKSYPTYKGGSSSLKKLGI-----LGRKGEVGEFWALKDVSFEVPRGERIGLIGR 56
Query: 94 NGHGKTTLLRHIA 106
NG GK+TLLR +A
Sbjct: 57 NGAGKSTLLRLLA 69
Score = 28.7 bits (65), Expect = 7.7
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 202 RVHEIMRTWKK---TLLVVSHDQSFLNNICTDIIHLD 235
+ +R K T+++VSHD S + +C + L+
Sbjct: 180 KCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLE 216
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 80.4 bits (199), Expect = 5e-17
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 73/225 (32%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
+VTF Y G+ +L+ V+F + +VA+VGP+G GKST L LL + G +
Sbjct: 5 NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD 64
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------------------- 427
S R IG + P DT LFN
Sbjct: 65 IREVTLDSLRRAIG---------VVPQDTV------LFNDTIGYNIRYGRPDATDEEVIE 109
Query: 428 -------------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474
P + +G GL LSGG+K RVA+A L NP I
Sbjct: 110 AAKAAQIHDKIMRFP-DGYDTIVGERGL----------KLSGGEKQRVAIARAILKNPPI 158
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
L+LDE T+ LD + + A+++ G I+++H I D
Sbjct: 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNAD 203
Score = 33.0 bits (76), Expect = 0.28
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
G + + + I +G++ +VGP+G GK+T+LR
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILR 45
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 79.1 bits (196), Expect = 5e-17
Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 37/174 (21%)
Query: 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGELR--------K 395
GK LL+ V+ A++GP+G GKST LN L G T GE+ +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR 78
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLS 455
S R IG Q + L P T E LM +R LS
Sbjct: 79 SFRKIIGYVPQD--DILHPTLTVRETLM-----------------------FAAKLRGLS 113
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 507
GG++ RV++A ++NP +L LDEPT+ LD S + ++ G I+ S
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
Score = 34.4 bits (80), Expect = 0.072
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 66 SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109
S S G +L N + + G ++GP+G GK+TLL +A R
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 83.9 bits (208), Expect = 6e-17
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 59/229 (25%)
Query: 331 LPPP--VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387
LP P L + +T PG K +L+ ++F L + ++GP+G GKST LL G
Sbjct: 328 LPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP 387
Query: 388 PNKGELRKSPRLRIGKFDQHS----GEH---------LFP-----------DDTPCEYLM 423
P G S RL Q G H LF ++ E ++
Sbjct: 388 PTSG----SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 424 K----------LFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471
+ + LP Y+ +G G LSGGQ+ R+ALA +
Sbjct: 444 EAARLAGVHELILRLPQGYDTR---IGEGGAT----------LSGGQRQRIALARALYGD 490
Query: 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVSHDERLIRETD 517
P +++LDEP +NLD E ALA AI +GG V++++H + D
Sbjct: 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539
Score = 35.7 bits (83), Expect = 0.068
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 59 DIKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ VE + + G + + + + +G G++GP+G GK+TL R +
Sbjct: 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL 382
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 83.4 bits (207), Expect = 6e-17
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P L + +T +PG V + V+ + AL+G NG GKST + +L G P+ GE
Sbjct: 2 EPALEMRGITKRFPG-VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 393 LR--------KSP----RLRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSR 434
+R KSP RL IG QH L P T E ++ K + ++R
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 435 -------RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+ G+ + A + DLS G++ RV + + +LILDEPT L +
Sbjct: 119 ARIKELSERYGLP-VDPDAK---VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 488 SIDALAEAIKNY--QG-GVILVSH 508
D L E ++ +G +I ++H
Sbjct: 175 EADELFEILRRLAAEGKTIIFITH 198
Score = 52.5 bits (127), Expect = 4e-07
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 36/223 (16%)
Query: 321 VKFRFPNPPYLP-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
V R PP P VL + D++ G ++ V+F + V + G G G+S +
Sbjct: 242 VVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 380 NLLKGELTPNKGEL---------RKSPRLRIGK------FDQHSGEHLFPD--------- 415
+ G P G + R SPR R D+H G L D
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRH-GHGLVLDLSLAENLVL 360
Query: 416 ---DTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTL 469
D + + +R + F + + + P R LSGG + ++ LA EL
Sbjct: 361 GRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR 420
Query: 470 NNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHD 509
PD+LI +PT LD+ +I+ + E + ++ V+L+S D
Sbjct: 421 R-PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462
Score = 30.2 bits (69), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLR 103
+ +L + G + L+G NG GK+TL++
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMK 48
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 79.1 bits (196), Expect = 7e-17
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 40/182 (21%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
GGK +L+ VN + AL+GPNG GKST + G P+ + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-----------PKYEVTE--- 56
Query: 407 HSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIP-------IRDL---- 454
GE LF + + +L P E++R LG+F Y IP +R +
Sbjct: 57 --GEILFKGED-------ITDLPPEERAR--LGIFLAFQYPPEIPGVKNADFLRYVNEGF 105
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDER 511
SGG+K R + +L L PD+ ILDEP + LDI+++ +AE I + V++++H +R
Sbjct: 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165
Query: 512 LI 513
L+
Sbjct: 166 LL 167
Score = 47.1 bits (113), Expect = 5e-06
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++++ +S G E+ NL I G + L+GPNG GK+TL + I
Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 79.3 bits (196), Expect = 8e-17
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPRLRIGKF 404
L+ V+ + VA+VG +G GKST L+LL G P GE L K K
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80
Query: 405 -DQHSG-----EHLFPDDTPCEYLMKLFNLPY-----------EKSRRQLGMFGLPSYAH 447
++ G HL PD T E + +P E++ L GL H
Sbjct: 81 RNKKLGFIYQFHHLLPDFTALENVA----MPLLIGKKSVKEAKERAYEMLEKVGL---EH 133
Query: 448 TIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQG 501
I R +LSGG++ RVA+A +N P +++ DEPT NLD + + + + +
Sbjct: 134 RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193
Query: 502 GVILVSHDERLIRETD 517
++V+HD L ++ D
Sbjct: 194 SFLVVTHDLELAKKLD 209
Score = 32.3 bits (74), Expect = 0.44
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 127
+ +L I G +VG +G GK+TLL H+ L P+S ++L+ Q +
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLG-GLDNPTSGEVLFNGQSLSK 71
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 78.7 bits (195), Expect = 1e-16
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 347 GGKVLLEKVNFGL---DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIG 402
++L ++F L ++ V + GPNG GK++ L +L G P+ GE+ + +R
Sbjct: 12 DERILFSGLSFTLNAGEL---VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ 68
Query: 403 KFDQHSGEHLF--------PDDTPCE---YLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIP 450
+ + H + L+ + T E + +L +++ + L GL + +P
Sbjct: 69 RDEYHQ-DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VP 126
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVS 507
+R LS GQ+ RVALA L L + ILDEP +D + + L + + QGG VIL +
Sbjct: 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT 186
Query: 508 H 508
H
Sbjct: 187 H 187
Score = 49.0 bits (118), Expect = 1e-06
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-- 131
LF + + +G + GPNG GKT+LLR +A LA P + ++L+ + + D
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILA--GLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 132 ----------AVNIVLSADKN 142
+ L+A +N
Sbjct: 74 QDLLYLGHQPGIKTELTALEN 94
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 83.0 bits (206), Expect = 1e-16
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL------KGELTPNKGELR----K 395
P GK L +NF L R+ALVGP+G GK++ LN L +G L N ELR +
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPE 419
Query: 396 SPRLRIGKFDQHSGEHLF------------PDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
S R + Q+ L PD + E L + + L GL
Sbjct: 420 SWRKHLSWVGQNP--QLPHGTLRDNVLLGNPDASD-EQLQQALENAWVSEFLPLLPQGLD 476
Query: 444 SYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
+ PI D LS GQ R+ALA L +L+LDEPT +LD S + +A+
Sbjct: 477 T-----PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 500 QGG--VILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDD 537
++V+H +L ++W ++ I + GD+ +
Sbjct: 532 SRRQTTLMVTH--QLEDLAQWDQIWVMQDGQIVQ-QGDYAE 569
Score = 46.0 bits (110), Expect = 4e-05
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNS-VDIKVENFS-LSAKGVELFHNANLQIASGRRYGL 90
+ L F + + + N V I+ E+ LS G L N + +G+R L
Sbjct: 322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIAL 381
Query: 91 VGPNGHGKTTLL 102
VGP+G GKT+LL
Sbjct: 382 VGPSGAGKTSLL 393
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 82.6 bits (205), Expect = 1e-16
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 45/223 (20%)
Query: 334 PVLGLHD--VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN- 389
P+L + + V F GG+V + V+F ++ + +VG +G GKST L G L
Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63
Query: 390 ------------------KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 431
+ E+RK RI Q L P T + + + L +
Sbjct: 64 RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123
Query: 432 KSRRQ--------LGMFGLP------SYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
SR + L GLP Y H LSGG + RV +A P +LI
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPH-----QLSGGMRQRVMIAMALALKPKLLIA 178
Query: 478 DEPTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRET 516
DEPT LD + +D L + + V+ ++HD ++ E
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Score = 68.8 bits (169), Expect = 3e-12
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 41/221 (18%)
Query: 334 PVLGLHDVTFGYPGGKVL----------LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 383
P+L + +++ Y K L ++ V+F L + LVG +G GKST +L
Sbjct: 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA 338
Query: 384 GELTPNKGE---------LRKSPRLRIGK-----F-DQHSGEHLFPDDTPCEYLMK--LF 426
G L P+ G L R+ + F D +S L P T + L +
Sbjct: 339 GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS--LNPRMTVGDILAEPLRI 396
Query: 427 NLPYEKSRRQ------LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479
+ + R+ L + GLP + P +LSGGQ+ RVA+A P +LILDE
Sbjct: 397 HGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEPKLLILDE 455
Query: 480 PTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRET 516
P + LD + ++ L + + + +SHD ++R
Sbjct: 456 PVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496
Score = 44.5 bits (106), Expect = 1e-04
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ F V+ + + + G GLVG +G GK+TL R +A L PSS ++
Sbjct: 292 SRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA--GLLPPSSGSII 349
Query: 120 YCEQEVEAS 128
+ Q+++ +
Sbjct: 350 FDGQDLDLT 358
Score = 38.7 bits (91), Expect = 0.008
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++VEN ++ V + + ++ G G+VG +G GK+TL +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALAL 55
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 79.7 bits (197), Expect = 1e-16
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIG 402
G+ LL+ V+ L +A++GPNG GKST L L GEL+P+ GE+
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 403 KFDQHSGEHLFPDDTPCEY------LMKLFNLPYEKSRRQ----------LGMFGLPSYA 446
+ +H + P ++ + ++++ +P+ R L L A
Sbjct: 72 ELARHRA--VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 447 HTIPIRDLSGGQKARVALAEL------TLNNPDILILDEPTNNLDI---ESIDALAEAIK 497
R LSGG++ RV LA + + + L LDEPT+ LDI LA +
Sbjct: 130 -GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 498 NYQGGVILVSHD 509
G V+ V HD
Sbjct: 189 REGGAVLAVLHD 200
Score = 50.4 bits (121), Expect = 6e-07
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN S S G L +L + G ++GPNG GK+TLL+ +
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL 47
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 78.4 bits (194), Expect = 1e-16
Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 44/188 (23%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH---SGEHL------FPDD 416
+VG NG GK+T + LK LT P + G D GE F +
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTG-----ELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80
Query: 417 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH--------TIPIRDLSGGQKA------RV 462
+Y R L + + H SGG+K R+
Sbjct: 81 NGKKY----------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRL 130
Query: 463 ALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGG----VILVSHDERLIRETD 517
ALAE +N IL LDEPT NLD E+I+ +LAE I+ + +I+++HDE L+ D
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190
Query: 518 CELWALEK 525
++ +EK
Sbjct: 191 -HIYRVEK 197
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 77.4 bits (191), Expect = 1e-16
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 48/188 (25%)
Query: 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
L +++V+F YP + +L+ ++ L ++AL+G +G GKST L LL G+L P +GE
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 393 --------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 444
L K+ I +Q +LF D T R LG
Sbjct: 61 LDGVPVSDLEKALSSLISVLNQRP--YLF-DTT---------------LRNNLG------ 96
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQ 500
R SGG++ R+ALA + L + I++LDEPT LD + + + E +K+
Sbjct: 97 -------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT 149
Query: 501 GGVILVSH 508
+I ++H
Sbjct: 150 --LIWITH 155
Score = 34.2 bits (79), Expect = 0.095
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 64 NFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL 110
+FS + ++ N +L++ G + L+G +G GK+TLL+ + T L
Sbjct: 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL-TGDL 52
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 81.1 bits (200), Expect = 1e-16
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 29/189 (15%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--------------- 391
GGK + + + ++G +G GKST + +L + P G
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLP----YEKSRRQLGMFGLPS 444
ELR+ R +IG Q LFP T +L P EK+ L + GL
Sbjct: 64 ELREVRRKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQ 500
Y H P +LSGG + RV LA PDIL++DE + LD D++ + +K Q
Sbjct: 122 YEHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 501 GGVILVSHD 509
++ ++HD
Sbjct: 181 KTIVFITHD 189
Score = 31.4 bits (71), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
KGV ++A+L IA G + ++G +G GK+T +R +
Sbjct: 5 GKKGV---NDADLAIAKGEIFVIMGLSGSGKSTTVRML 39
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 78.9 bits (195), Expect = 2e-16
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 27/196 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
+VT Y GGK + +N + + L+GP+G GK+T + ++ + P GE+
Sbjct: 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62
Query: 395 -----KSP---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGM 439
+ P R +IG Q G LFP T E + KL P EK R + L +
Sbjct: 63 EDIREQDPVELRRKIGYVIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLAL 120
Query: 440 FGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL +A P +LSGGQ+ RV +A +P +L++DEP LD + D L E K
Sbjct: 121 VGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179
Query: 498 NYQ----GGVILVSHD 509
Q ++ V+HD
Sbjct: 180 RLQQELGKTIVFVTHD 195
Score = 36.5 bits (85), Expect = 0.023
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLSAKGVE-LFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN + G + +N NL+IA G L+GP+G GKTT ++ I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI 47
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 78.7 bits (194), Expect = 2e-16
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 334 PVLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L ++ Y G V L V+F + +A+VG +G GKST L+LL G TP
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 391 GEL--------RKSPRLRIGKFDQHSG-----EHLFPDDTPCEYL-MKLF------NLPY 430
G++ + S + +Q G HL PD T E + M L
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
++ L GL A+ P +LSGG++ RVA+A +NNP +++ DEPT NLD + D
Sbjct: 124 SRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 491 ALAEAIK--NYQGGV--ILVSHDERL 512
++ + + N G ++V+HD +L
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQL 208
Score = 28.6 bits (64), Expect = 7.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120
++ HN + I G +VG +G GK+TLL + L P+S D+++
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG--GLDTPTSGDVIF 68
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 80.5 bits (199), Expect = 2e-16
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RK 395
G L+ ++ + VAL+GP+G GKST L ++ G TP+ G +
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 396 SPRLR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRR------QLGMFGLPSY 445
+ R R +G QH LFP T + + +K+ ++ L + L
Sbjct: 73 AVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQG 501
A P LSGGQ+ RVALA P +L+LDEP LD E L +
Sbjct: 131 ADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 502 GVILVSHDERLIRETDCELWALEKKNIRK 530
+ V+HD+ E + L + I +
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQ 218
Score = 49.3 bits (118), Expect = 3e-06
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ N + +L I SG L+GP+G GK+TLLR IA
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 78.4 bits (194), Expect = 2e-16
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
+ + +++ YP GK L+ V+ ++ VAL+GP+G GKST L L G + P G +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 395 -------------KSPRLRIGK-FDQHSGEHLFPDDTPCEYLM-----------KLFNLP 429
+ R +IG F Q +L + E ++ LF L
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQF---NLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 430 YEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
++ +++ L GL A+ LSGGQ+ RVA+A + P +++ DEP +LD
Sbjct: 118 PKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 486 IES----IDALAEAIKNYQGGVILVSHDERLIRE 515
S +D L + VI+ H L RE
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210
Score = 48.3 bits (116), Expect = 3e-06
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+VEN S + G + + +L I G L+GP+G GK+TLLR + L P+S
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTS 55
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 78.6 bits (194), Expect = 3e-16
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
D+ F Y G L+ ++ + S+ AL+GPNG GKST L L G P +G ++
Sbjct: 9 DLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE 68
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGL 442
K R ++G Q + +F + N+ E RR L +
Sbjct: 69 VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM 128
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQ 500
+ P LS GQK RVA+A + +PD+++LDEP LD + L E + + Q
Sbjct: 129 WDFRDKPPYH-LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 501 GG-VILVSHDERLIRETDCELWA 522
G VI+ +HD L E WA
Sbjct: 188 GKTVIVATHDVDLAAE-----WA 205
Score = 39.3 bits (92), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+VE+ K G + +L I G + L+GPNG GK+TLL H+
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHL 51
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 78.9 bits (195), Expect = 4e-16
Identities = 61/190 (32%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---------- 393
G P K L+ VN ++ V L+G G GKST + L G L P G++
Sbjct: 15 GTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDK 74
Query: 394 ---RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLP- 443
R ++G Q+ LF + + NL + +R + + GL
Sbjct: 75 KVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY 134
Query: 444 -SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN---- 498
Y P +LSGGQK RVA+A + P ILILDEPT LD + D + IK
Sbjct: 135 EDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193
Query: 499 YQGGVILVSH 508
Y +ILVSH
Sbjct: 194 YNMTIILVSH 203
Score = 31.6 bits (72), Expect = 1.1
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 60 IKVENFS-LSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 114
IK+EN + + +G + N N++I G GL+G G GK+TL++H+ L P+
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHL--NGLLKPT 60
Query: 115 S 115
S
Sbjct: 61 S 61
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 79.1 bits (195), Expect = 4e-16
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+ + +V Y G K++++ ++F + L+GPNG GK+T L +L G P+
Sbjct: 3 MSVAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 391 GELR----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQL 437
G + + R R+G Q ++L PD T E L+ + F L +R +
Sbjct: 62 GSISLCGEPVPSRARHARQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALV 119
Query: 438 GMF----GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L + A + +LSGG K R+ LA +N+PD+L+LDEPT LD
Sbjct: 120 PPLLEFAKLENKADA-KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Score = 36.7 bits (85), Expect = 0.022
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125
+ + G +GL+GPNG GKTT LR + L P + + C + V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLL--GLTHPDAGSISLCGEPV 71
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 76.9 bits (190), Expect = 4e-16
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L + +VT + G L+ ++F ++ L+GPNG GK+T + ++ G + P+ GE+
Sbjct: 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFG 441
+ R RIG + G L+P + YL +L L E++RR+ L
Sbjct: 60 DGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE 117
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
L YA+ + +LS G + +V +++P++LILDEP + LD +++ L + I+
Sbjct: 118 LSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 502 G---VILVSH 508
VIL +H
Sbjct: 177 AGKTVILSTH 186
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN + V + + + G +GL+GPNG GKTT +R I
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL 47
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 77.5 bits (191), Expect = 5e-16
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 40/194 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RK 395
GG+++++ V+ S L+GPNG GKST L LL G L P+ G + R+
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYL--MKLFNLPY------------EKSRRQLGMFG 441
+ R+ +Q S P + L +P+ R L
Sbjct: 72 ARARRVALVEQDS-----DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 442 LPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
L A RD LSGG++ RV +A P +L+LDEPTN+LD+ + ++
Sbjct: 127 LSHLAD----RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 499 YQGG---VILVSHD 509
V+ HD
Sbjct: 183 LAATGVTVVAALHD 196
Score = 38.6 bits (90), Expect = 0.005
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ S SA G + ++ G GL+GPNG GK+TLLR +A
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA 48
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 76.9 bits (190), Expect = 6e-16
Identities = 65/208 (31%), Positives = 91/208 (43%), Gaps = 49/208 (23%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
++F Y G + L+ V+F + VAL+GPNG GKST +LL +G+
Sbjct: 6 GLSFRY-GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 393 LRKSPR---LRIGK-FDQHSGEHLFPDDTPCEYLMKLFNLPYEK-----SRRQ------- 436
LR++PR R+G F Q + L D L NL Y SR +
Sbjct: 65 LRRAPRAALARLGVVFQQPT---LDLD------LSVRQNLRYHAALHGLSRAEARARIAE 115
Query: 437 -LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
L GL A +R+L+GG + RV +A L+ P +L+LDEPT LD S A
Sbjct: 116 LLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA---- 170
Query: 496 IKNYQGGVILVSHDERLIRETD-CELWA 522
+ +H L R+ LWA
Sbjct: 171 ---------ITAHVRALARDQGLSVLWA 189
Score = 33.0 bits (76), Expect = 0.32
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ + GR L+GPNG GK+TL + TR
Sbjct: 21 SFTVRPGRFVALLGPNGAGKSTLFS-LLTRLYVAQEG 56
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 80.5 bits (199), Expect = 6e-16
Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 52/240 (21%)
Query: 317 REYIVKFRFPNPPY-LPPP--VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNG 372
E + + +P LP P L + +VT PGGK L ++F L +A++GP+G
Sbjct: 295 NELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSG 354
Query: 373 IGKSTFLNLLKGELTPNKG-------ELRKSPRLRIGK-----------FDQHSGEHL-- 412
GKST L+ G P G +L++ R GK F E++
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414
Query: 413 FPDDTPCEYLMK----------LFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460
F ++ E +++ + LP Y+ +G G LSGGQ+
Sbjct: 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTV---IGPGGAT----------LSGGQRQ 461
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERLIRETD 517
R+ALA +P +++LDEP +NLD E ALA AIK + V++++H L+ D
Sbjct: 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVD 521
Score = 30.4 bits (69), Expect = 2.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ + +G ++GP+G GK+TL R I
Sbjct: 336 GISFSLQAGEALAIIGPSGSGKSTLARLI 364
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 76.2 bits (188), Expect = 8e-16
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
K++F L+ E + G +G GKST L + G P+ G + + + FD +L
Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL---FDSRKKINLP 71
Query: 414 PDDTPCEYLMK---LF-------NLPY------EKSRRQ-----LGMFGLPSYAHTIPIR 452
P + + LF NL + + R L + GL +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-YPA 130
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSH 508
LSGG+K RVALA P++L+LDEP + LD + L + KN VI V+H
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190
Query: 509 D 509
D
Sbjct: 191 D 191
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 79 NLQIA---SGRRYGLVGPNGHGKTTLLRHIA 106
L+I + G+ G +G GK+TLLR IA
Sbjct: 14 TLKIDFDLNEEVTGIFGASGAGKSTLLRCIA 44
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 76.7 bits (189), Expect = 1e-15
Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 33/196 (16%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
V + DV+F G++ L+G NG GK+T L ++ L P+ G
Sbjct: 12 GSKVQAVRDVSFEAEEGEI--------------TGLLGENGAGKTTLLRMIATLLIPDSG 57
Query: 392 E-------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG------ 438
+ + P K GE +K F SR+++
Sbjct: 58 KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL 117
Query: 439 --MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L Y + + S G K +VA+A +++P IL+LDEPT+ LDI + + I
Sbjct: 118 SKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 497 ---KNYQGGVILVSHD 509
KN VI SH
Sbjct: 177 KQLKNEGRAVIFSSHI 192
Score = 40.9 bits (96), Expect = 8e-04
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ + + G GL+G NG GKTTLLR IAT L IP S
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIAT--LLIPDS 56
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 77.0 bits (190), Expect = 1e-15
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------ 393
D+ + YP G L+ +NF + VAL+GPNG GKST G L P GE+
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 394 ----RKS---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------EKSRRQLGMF 440
+KS R +G Q+ + LF + NL ++ + L
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV 125
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 498
G+ + + P LSGGQK RVA+A + P+I++LDEPT+ LD + + + N
Sbjct: 126 GMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 499 YQGGVILVS-HDERLI 513
+G I++S HD L+
Sbjct: 185 KEGITIIISTHDVDLV 200
Score = 32.0 bits (73), Expect = 0.74
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
G E N + G L+GPNG GK+TL H
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLH 47
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 76.1 bits (188), Expect = 1e-15
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSPRLRIGKF 404
GG V L+ V+ + L+GP+G GK+T L L+ G TP GE L +
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH 70
Query: 405 DQHSGE-----HLFPDDTPCE---YLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIR 452
+ LFP T E + ++L LP E+ L + L YA+ P
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-S 129
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSH 508
LSGGQ+ RVA+A +N P +L+LDEP LD++ + +K Q + + V+H
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
Query: 509 DE 510
D+
Sbjct: 190 DQ 191
Score = 41.1 bits (97), Expect = 8e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++EN S G +L I G + L+GP+G GKTTLLR IA
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA 47
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 77.7 bits (192), Expect = 1e-15
Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L L +V + +VL + VN ++ V L+GP+G GKST L ++ G P GE+
Sbjct: 4 LELKNVRKSFGSFEVLKD-VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 395 -------KSPRLR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LG 438
P R I F ++ L+P T E + +KL +P + ++
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNYA---LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+ GL + P LSGGQ+ RVALA + P + +LDEP +NLD + + IK
Sbjct: 120 LLGLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178
Query: 499 YQG----GVILVSHD 509
I V+HD
Sbjct: 179 LHERLGTTTIYVTHD 193
Score = 53.4 bits (129), Expect = 1e-07
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N S E+ + NL I G L+GP+G GK+TLLR IA L P+S ++L
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA--GLEEPTSGEIL 61
Query: 120 YCEQEV 125
++V
Sbjct: 62 IDGRDV 67
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 75.3 bits (185), Expect = 2e-15
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 31/187 (16%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--RKSP------- 397
G +L ++ + +A+ GP+G GKST L ++ ++P G L
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---------LGMFGLPSYA 446
R ++ Q LF D T + L+ P++ R+ L F LP
Sbjct: 74 AYRQQVSYCAQTPA--LFGD-TVEDNLI----FPWQIRNRRPDRAAALDLLARFALPDSI 126
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGG 502
T I +LSGG+K R+AL P IL+LDE T+ LD + + E I Y
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 503 VILVSHD 509
V+ ++HD
Sbjct: 187 VLWITHD 193
Score = 38.3 bits (89), Expect = 0.005
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 128
A ++ +N +L + +G + GP+G GK+TLL+ +A+ L P+S LL+ ++V
Sbjct: 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDVSTL 70
Query: 129 D 129
Sbjct: 71 K 71
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 76.9 bits (190), Expect = 3e-15
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 32/207 (15%)
Query: 338 LHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-- 391
L +V+ + L+ V+ + ++G +G GKST L L+ P G
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 392 --------ELRKSP----RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ 436
L ++ R +IG QH +L T E + ++L +P + +++
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 437 ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
L + GL A P LSGGQK RVA+A NNP IL+ DE T+ LD E+ ++
Sbjct: 122 VAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180
Query: 493 AEAIK--NYQGG--VILVSHDERLIRE 515
E +K N + G ++L++H+ +++
Sbjct: 181 LELLKDINRELGLTIVLITHEMEVVKR 207
Score = 41.5 bits (98), Expect = 9e-04
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 60 IKVENFS-----LSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 114
I++EN S V + +L+I G +G++G +G GK+TLLR I L P+
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI--NLLERPT 59
Query: 115 SIDLLYCEQEVEASDDSAV 133
S + Q++ A ++ +
Sbjct: 60 SGSVFVDGQDLTALSEAEL 78
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 75.2 bits (185), Expect = 4e-15
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 27/197 (13%)
Query: 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+L + ++ Y G + LE V+ + V ++GP+G GK+T LNL+ G +TP++G
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 393 LRKSPRLRIGK-------FDQHSGEHLFP-----DDTPCEYLMKLFNLP----YEKSRRQ 436
++ + R G F + L P D+ + ++L + E + +
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEA---LLPWLNVIDNV--AFGLQLRGIEKAQRREIAHQM 116
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESI-DAL 492
L + GL H LSGG + RV +A P +L+LDEP LD E + + L
Sbjct: 117 LALVGLEGAEHKYIW-QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 493 AEAIKNYQGGVILVSHD 509
+ + V+L++HD
Sbjct: 176 LDLWQETGKQVLLITHD 192
Score = 44.4 bits (105), Expect = 8e-05
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 62 VENFSLS--AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V + SLS K + +L IASG ++GP+G GKTTLL IA
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 75.0 bits (185), Expect = 4e-15
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 29/212 (13%)
Query: 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 402
L+ ++F + RV ++G NG GKST L L+ G P G+++ + ++
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL 93
Query: 403 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRR---------QLGMFGLPSYAHTIP 450
+ +G P+ T E + L ++ +LG F P
Sbjct: 94 -IELGAG--FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI------DQP 144
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVILV 506
++ S G AR+A + T PDIL+LDE D ++ L E ++ ++LV
Sbjct: 145 VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLV 203
Query: 507 SHDERLIRET-DCELWALEKKNIRKFNGDFDD 537
SHD I++ D +W LE IR G ++
Sbjct: 204 SHDLGAIKQYCDRAIW-LEHGQIR-MEGSPEE 233
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 57 SVDIKVENFSLSAKGVELFH---NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
S+ +++ + + V F + + +I G R G++G NG GK+TLL+ IA
Sbjct: 22 SLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 77.7 bits (192), Expect = 5e-15
Identities = 72/229 (31%), Positives = 94/229 (41%), Gaps = 52/229 (22%)
Query: 328 PPYLPPP--VLGL---HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
PP V G DV+F Y + +E V+F VA+VGP G GKST +NLL
Sbjct: 322 PPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
Query: 383 KGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLF------------PDDTPC 419
+ P G + R S R I Q +G LF PD T
Sbjct: 382 QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG--LFNRSIEDNIRVGRPDATDE 439
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPS---YAHTIPIR--DLSGGQKARVALAELTLNNPDI 474
E R Q F Y + R LSGG++ R+A+A L +P I
Sbjct: 440 EMRAAA-------ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 475 LILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERL--IRETD 517
LILDE T+ LD+E+ AL E +K +I +H RL +R D
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFII--AH--RLSTVRNAD 537
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 75.9 bits (187), Expect = 5e-15
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSGEH 411
++F + V +G NG GKST L +L G L P G++R K P R ++ + G
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 412 LF---------PDDTPCEYLMKLFNLPYEKSRRQLG----MFGLPSYAHTIPIRDLSGGQ 458
+ P E L ++ +P ++ +L + L + P+R LS GQ
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQ 161
Query: 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
+ R LA L+ P +L LDEPT LD+ + + E +K Y Q V+L +H
Sbjct: 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
Score = 37.4 bits (87), Expect = 0.016
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLR 103
+ + +I G G +G NG GK+T L+
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLK 68
Score = 28.9 bits (65), Expect = 7.1
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
+ E + T+L+ +H + +C ++ +D +L + G ++ + KE +
Sbjct: 199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF-GPYKEFSV 256
Query: 263 E 263
E
Sbjct: 257 E 257
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 73.9 bits (182), Expect = 5e-15
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 34/192 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-- 391
V + V+F G+V L+GPNG GK+T L +L G L P+ G
Sbjct: 17 TVQAVDGVSFTVKPGEV--------------TGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62
Query: 392 -----ELRKSP---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL-PYEKSRRQLGM 439
++ K P R R+G L+ T E Y L+ L E + R +
Sbjct: 63 TVDGFDVVKEPAEARRRLGFVS--DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 440 FGLPSYAHTIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
+ R S G + +VA+A +++P +L+LDEPT LD+ + AL E I+
Sbjct: 121 ADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 498 NY--QGGVILVS 507
G IL S
Sbjct: 181 QLRALGKCILFS 192
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107
F K V+ + + G GL+GPNG GKTT LR +A
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 77.2 bits (191), Expect = 6e-15
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNK 390
PP+L L ++ + G K L + V+ + V AL+G NG GKST + +L G P+
Sbjct: 5 TPPLLELRGISKSFGGVKAL-DGVSLTV-RPGEVHALLGENGAGKSTLMKILSGVYPPDS 62
Query: 391 GELR--------KSPR----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--------- 429
GE+ SPR I Q L P+ + E + L P
Sbjct: 63 GEILIDGKPVAFSSPRDALAAGIATVHQEL--SLVPNLSVAENIF-LGREPTRRFGLIDR 119
Query: 430 ---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
++R L GL T + DLS Q+ V +A + +LILDEPT L +
Sbjct: 120 KAMRRRARELLARLGLDIDPDT-LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 487 ESIDALAEAIKNY--QG-GVILVSH 508
+ + L + I+ QG +I +SH
Sbjct: 179 KETERLFDLIRRLKAQGVAIIYISH 203
Score = 48.7 bits (117), Expect = 6e-06
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 450 PIRDLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQ 500
PI LSGG QK V LA +P +LILDEPT +D+ + I LA K
Sbjct: 398 PIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK--- 452
Query: 501 GGVILVS 507
++++S
Sbjct: 453 -AILMIS 458
Score = 36.7 bits (86), Expect = 0.034
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ S S GV+ +L + G + L+G NG GK+TL++ ++
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS 55
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 74.7 bits (184), Expect = 6e-15
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P++ L +V+ GK +L +++ ++ A+VGPNG GK+T L+LL GE P+ G
Sbjct: 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 392 ----------------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNL 428
ELRK RIG E +T + ++ ++
Sbjct: 87 DVTLLGRRFGKGETIFELRK----RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQE 142
Query: 429 PYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
L + G A P LS G++ RV +A + +P++LILDEP
Sbjct: 143 DLTAEDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 484 LDIESIDALAE-----AIKNYQGGVILVSH 508
LD+ + + L A ++ V+H
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTH 231
Score = 46.5 bits (111), Expect = 2e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 45 KASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
K KR ++ N I+++N S+ G ++ + + Q+ G + +VGPNG GKTTLL
Sbjct: 17 KEPKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSL 76
Query: 105 IAT 107
+
Sbjct: 77 LTG 79
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 71.7 bits (177), Expect = 8e-15
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 39/167 (23%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
+ G K L + V+ + AL+G NG GKST + +L G P+ GE+
Sbjct: 10 FGGVKAL-DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL---------V 59
Query: 405 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464
D G+ + F P + R + M + LS G++ V +
Sbjct: 60 D---GKEV------------SFASPRDARRAGIAM-----------VYQLSVGERQMVEI 93
Query: 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILVSH 508
A N +LILDEPT L ++ L + I+ QG VI +SH
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Score = 35.1 bits (82), Expect = 0.035
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ + GV+ +L + G + L+G NG GK+TL++ ++
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILS 47
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 73.4 bits (180), Expect = 9e-15
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
L L V + Y + L + + + VA++GP+G GKST LNL+ G + P G +
Sbjct: 1 LALDKVRYEY---EHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57
Query: 394 ------RKSPRLRIGK--FDQHSGEHLFPDDTPCEYL-------MKLFNLPYEKSRRQLG 438
+P R F +++ LF T + + +KL EK
Sbjct: 58 NDQSHTGLAPYQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ 114
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
G+ Y +P LSGGQ+ RVALA + IL+LDEP + LD E + + +
Sbjct: 115 QVGIADYLDRLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173
Query: 495 AIKNYQGGVILVSH 508
Q +++V+H
Sbjct: 174 LCSERQRTLLMVTH 187
Score = 32.9 bits (75), Expect = 0.29
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+L +A G ++GP+G GK+TLL IA
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIA 45
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 74.5 bits (183), Expect = 9e-15
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------- 394
G P K L+ ++F L+ S VALVG G GKST + L P+ G +
Sbjct: 15 GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPE 74
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFG 441
K R ++ Q LF ++T + + K F ++++ + L G
Sbjct: 75 TGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVG 133
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
L + +LSGGQ RVA+A + P+IL LDEP LD E + + K+YQ
Sbjct: 134 LSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193
Query: 502 G---VILVSHDERLIRETDCELWALEKKNIRK 530
VILV+H+ + E ++ LE + K
Sbjct: 194 AGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
Score = 30.2 bits (68), Expect = 2.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 66 SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ KG++ N + ++ G LVG G GK+TL++H AL PSS
Sbjct: 17 PMEKKGLD---NISFELEEGSFVALVGHTGSGKSTLMQHF--NALLKPSS 61
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 72.9 bits (179), Expect = 1e-14
Identities = 66/195 (33%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KG 391
+L L +V+ PG LL VNF + V L+GP+G GKST L+ + G L G
Sbjct: 2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60
Query: 392 ELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYE---KSRRQ-----LG 438
EL RL + Q LF D +L LF LP +RR L
Sbjct: 61 ELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALE 120
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
GL H P LSGGQ+ARVAL L P L+LDEP + LD+ D + + +
Sbjct: 121 RSGLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179
Query: 499 YQGG----VILVSHD 509
+ V+HD
Sbjct: 180 EVRAAGIPTVQVTHD 194
Score = 36.3 bits (84), Expect = 0.022
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++N SL G L N N IA G L+GP+G GK+TLL +
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMI 49
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 76.9 bits (190), Expect = 1e-14
Identities = 67/222 (30%), Positives = 93/222 (41%), Gaps = 64/222 (28%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDME--SRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L ++TFGY P L+E NF L ++ RVALVG +G GKST L+ G P GE+
Sbjct: 480 LRNITFGYSPLEPPLIE--NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----KLFNLPYEKS-RRQLGMFGLPSYAHT 448
FD E + + M LF E + R L ++ T
Sbjct: 538 ---------FDGIPREEIPREVLANSVAMVDQDIFLF----EGTVRDNLTLWD-----PT 579
Query: 449 IPIRDL-------------------------------SGGQKARVALAELTLNNPDILIL 477
IP DL SGGQ+ R+ +A + NP ILIL
Sbjct: 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639
Query: 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL--IRETD 517
DE T+ LD E+ + + ++ I+V+H RL IR+ D
Sbjct: 640 DEATSALDPETEKIIDDNLRRRGCTCIIVAH--RLSTIRDCD 679
Score = 34.2 bits (79), Expect = 0.21
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
F S L N +L + G+R LVG +G GK+T+ + +A
Sbjct: 485 FGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 72.6 bits (179), Expect = 1e-14
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------- 393
G KV+L+ +N ++ A++G +G GKST LN++ + G++
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSK 68
Query: 394 --RKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPY----EKSRRQLGMFGLPS 444
K R ++G Q+ L ++T E L +K L EK + L GL
Sbjct: 69 KASKFRREKLGYLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL 126
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG 502
I +LSGG++ RVALA L P +++ DEPT +LD ++ D + + + N +G
Sbjct: 127 KLKQ-KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 503 -VILVSHD 509
+I+V+HD
Sbjct: 186 TIIIVTHD 193
Score = 37.6 bits (88), Expect = 0.008
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++N S + + NL I G+ Y ++G +G GK+TLL I
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG 45
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 73.9 bits (182), Expect = 2e-14
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 28/197 (14%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----- 392
+V+ Y G K ++ VN ++ + L+GP+G GK+T L ++ + P GE
Sbjct: 4 FENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62
Query: 393 --LRKSP----RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQ------LGM 439
+ R +IG Q G LFP T E + + L ++K R + L +
Sbjct: 63 EDISDLDPVELRRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120
Query: 440 FGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL YA P +LSGGQ+ RV +A +P IL++DEP LD + L E IK
Sbjct: 121 VGLDPSEYADRYP-HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 498 NYQGG----VILVSHDE 510
Q ++ V+HD
Sbjct: 180 ELQKELGKTIVFVTHDI 196
Score = 42.3 bits (100), Expect = 4e-04
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN S + + NL I G L+GP+G GKTT L+ I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI 47
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 75.9 bits (187), Expect = 2e-14
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 29/220 (13%)
Query: 317 REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKS 376
R V R V L K LL+ V+ +A++G +G GK+
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKT 65
Query: 377 TFLNLLKGELTPN---------KGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYLM--- 423
T +N L G + +R I + Q + P T E+LM
Sbjct: 66 TLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD-DLFIPTLTVREHLMFQA 124
Query: 424 --KLFNLPYEKSRRQ-----LGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNN 471
++ +K +R+ L GL A+T ++ LSGG++ R+A A L +
Sbjct: 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184
Query: 472 PDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSH 508
P +L DEPT+ LD ++ + +K Q G +I H
Sbjct: 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
Score = 30.4 bits (69), Expect = 3.3
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 38 FTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGV---ELFHNANLQIASGRRYGLVGPN 94
T S + R D + + + L N + G ++G +
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSS 60
Query: 95 GHGKTTLLRHIATR 108
G GKTTL+ +A R
Sbjct: 61 GAGKTTLMNALAFR 74
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 74.3 bits (183), Expect = 3e-14
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 43/201 (21%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
V+G++D + G++ + ++G +G GKST + LL + P +GE
Sbjct: 41 VVGVNDASLDVEEGEIFV--------------IMGLSGSGKSTLVRLLNRLIEPTRGEIL 86
Query: 393 -------------LRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEK 432
LR+ R +I Q L P T E + +++ +P E+
Sbjct: 87 VDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREER 144
Query: 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IES 488
+ L + GL YA P +LSGG + RV LA N+PDIL++DE + LD E
Sbjct: 145 ALEALELVGLEGYADKYP-NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
Query: 489 IDALAEAIKNYQGGVILVSHD 509
D L E + ++ ++HD
Sbjct: 204 QDELLELQAKLKKTIVFITHD 224
Score = 33.1 bits (76), Expect = 0.38
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++A+L + G + ++G +G GK+TL+R +
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLL 74
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 72.2 bits (177), Expect = 4e-14
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 47/220 (21%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L D+T P G+ L+ L+GP+G GKS+ L +L P G L
Sbjct: 18 LFDITLDCPEGETLV--------------LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63
Query: 395 ------KSP--------RLRIGK-FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRR 435
K+P R +G F Q+ +L+P T E L ++ L +++
Sbjct: 64 NHFDFSKTPSDKAIRDLRRNVGMVFQQY---NLWPHLTVQENLIEAPCRVLGLSKDQALA 120
Query: 436 Q----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L L YA P+ LSGGQ+ RVA+A + P +L+ DEPT LD E
Sbjct: 121 RAEKLLKRLRLKPYADRYPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 492 LAEAIKNYQGGVI---LVSHDERLIRETDCELWALEKKNI 528
+ IK I +V+H+ + R+T + +E +I
Sbjct: 180 IVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
Score = 33.7 bits (77), Expect = 0.20
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I++ + + + L G L+GP+G GK++LLR
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLR 46
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 74.4 bits (183), Expect = 5e-14
Identities = 61/199 (30%), Positives = 85/199 (42%), Gaps = 45/199 (22%)
Query: 341 VTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
VTF YPG + L+ ++ ++ VALVG +G GKST +NL+ P+ G+
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 393 ----LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY--------EKSRRQLGMF 440
S R ++ Q LF +DT N+ Y + R L
Sbjct: 396 LADYTLASLRRQVALVSQDV--VLF-NDTIAN------NIAYGRTEQADRAEIERALAAA 446
Query: 441 -------GLPSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 488
LP T PI + LSGGQ+ R+A+A L + ILILDE T+ LD ES
Sbjct: 447 YAQDFVDKLPLGLDT-PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505
Query: 489 ---IDALAEAIKNYQGGVI 504
AL ++ VI
Sbjct: 506 RLVQAALERLMQGRTTLVI 524
Score = 34.7 bits (80), Expect = 0.16
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
D++ N F + + +L I G LVG +G GK+TL
Sbjct: 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTL 374
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 71.9 bits (177), Expect = 5e-14
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 43/202 (21%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----- 388
+G++DV+ G++ + ++G +G GKST L + + P
Sbjct: 36 QTVGVNDVSLDVREGEIFV--------------IMGLSGSGKSTLLRCINRLIEPTSGKV 81
Query: 389 ----------NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YE 431
++ ELR+ R +I Q L P T E + +++ +P E
Sbjct: 82 LIDGQDIAAMSRKELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREE 139
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IE 487
++ L + GL + H P +LSGG + RV LA +PDIL++DE + LD E
Sbjct: 140 RAAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198
Query: 488 SIDALAEAIKNYQGGVILVSHD 509
D L Q ++ ++HD
Sbjct: 199 MQDELLRLQAELQKTIVFITHD 220
Score = 31.1 bits (71), Expect = 1.4
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133
++ +L + G + ++G +G GK+TLLR I R L P+S +L Q++ A +
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCI-NR-LIEPTSGKVLIDGQDIAAMSRKEL 96
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 71.1 bits (174), Expect = 5e-14
Identities = 68/202 (33%), Positives = 95/202 (47%), Gaps = 37/202 (18%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------- 393
V+ Y GG+ L+ V F + L G +G GKST L L+ G P+ G++
Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66
Query: 394 -----RKSPRLR--IGK-FDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LG 438
R+ P LR IG F H HL D T + + + + + RR+ L
Sbjct: 67 TRLKNREVPFLRRQIGMIFQDH---HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALD 123
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 497
GL A PI+ LSGG++ RV +A +N P +L+ DEPT NLD DAL+E I
Sbjct: 124 KVGLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILR 178
Query: 498 -----NYQG-GVILVSHDERLI 513
N G V++ +HD LI
Sbjct: 179 LFEEFNRVGVTVLMATHDIGLI 200
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 71.2 bits (175), Expect = 5e-14
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIG 402
L+ V+ ++ ++GP G GKS L + G + P+ G++ + I
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 403 KFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLS 455
Q LFP T Y +K + ++ R++ M G+ + P LS
Sbjct: 75 YVPQ--NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-LS 131
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 509
GG++ RVA+A + NP IL+LDEP + LD+ + + L + K + V+ V+HD
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
Score = 33.8 bits (78), Expect = 0.15
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+KVEN S K +L N +L++ G + ++GP G GK+ LL IA
Sbjct: 1 LKVENLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIA 46
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 74.1 bits (183), Expect = 8e-14
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 35/163 (21%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG------KFDQHSGEHLFPDDTP 418
+ +VGPNGIGK+TF LL G L P++GE+ P L+I K D D T
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQYIKPDY--------DGTV 417
Query: 419 CEYLMKL---FNLPYEKSR--RQLGMFGLPSYAHTI---PIRDLSGGQKARVALAELTLN 470
+ L + Y KS + L + + ++DLSGG+ RVA+A
Sbjct: 418 EDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
+ D+ +LDEP+ +LD+E A+A+AI+ + ++V HD
Sbjct: 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513
Score = 48.3 bits (116), Expect = 8e-06
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDALAEAIKNYQGG--VILV 506
I +LSGG+ RVA+A L + D DEPT+ LDI + ++ A I+ G V++V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVV 267
Query: 507 SHD 509
HD
Sbjct: 268 EHD 270
Score = 47.9 bits (115), Expect = 1e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
++GPNGIGK+T + +L GEL PN G+ + P
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEP 134
Score = 36.3 bits (85), Expect = 0.048
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 38 FTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHG 97
F S + + V+ + K+ +FSL +G E++ + G+VGPNG G
Sbjct: 326 FEERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGEVI--------GIVGPNGIG 377
Query: 98 KTTLLRHIA 106
KTT + +A
Sbjct: 378 KTTFAKLLA 386
Score = 29.0 bits (66), Expect = 7.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 85 GRRYGLVGPNGHGKTTLLR 103
G+ G++GPNG GKTT ++
Sbjct: 99 GKVTGILGPNGIGKTTAVK 117
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 72.2 bits (177), Expect = 1e-13
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 298 RKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 357
R ++ +E+ + I + + P + + L V+ Y G K ++ ++F
Sbjct: 4 RAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSF 62
Query: 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRIGKFDQH 407
+ L+GPNG GKST ++ G +P+ G++ + R RIG Q
Sbjct: 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQF 122
Query: 408 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHTIPIRDLSGGQK 459
++L + T E L+ +F + S R+ L L S A + DLSGG K
Sbjct: 123 --DNLDLEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADA-RVSDLSGGMK 178
Query: 460 ARVALAELTLNNPDILILDEPTNNLD 485
R+ LA +N+P +LILDEPT LD
Sbjct: 179 RRLTLARALINDPQLLILDEPTTGLD 204
Score = 36.3 bits (84), Expect = 0.033
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+V I + S S + + + +ASG +GL+GPNG GK+T+ R I
Sbjct: 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMI 87
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 70.7 bits (174), Expect = 1e-13
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 342 TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--------- 391
FG GGKV L+ V+ + ++G +G GKST + + G P G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69
Query: 392 ------ELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLG 438
ELRK+ R RIG QH +L T E +++ +P E+ L
Sbjct: 70 TLLSGKELRKA-RRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE 126
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 497
+ GL A P LSGGQK RV +A NNP +L+ DE T+ LD E+ ++ ++
Sbjct: 127 LVGLEDKADAYP-AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD 185
Query: 498 -NYQGG--VILVSHDERLIRE 515
N + G ++L++H+ +++
Sbjct: 186 INRELGLTIVLITHEMEVVKR 206
Score = 37.9 bits (89), Expect = 0.007
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+++N F + V + +L + G +G++G +G GK+TL+R I
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCI 51
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 70.0 bits (172), Expect = 1e-13
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------------R 394
K +L +N ++ V L GP+G GK+T L L+ G + +G L
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77
Query: 395 KSPRLRIGK-FDQHS-------------GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
R IG F H+ L P+ + E E++R L
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE--------ARERARAMLEAV 129
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-- 498
GL + P +LSGGQK RVA+A ++ P +++ DEPT LD +S + E ++
Sbjct: 130 GLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
Query: 499 -YQGGVIL-VSHDERLIRETD 517
QG IL V+HD R++ D
Sbjct: 189 REQGCTILIVTHDNRILDVAD 209
Score = 32.3 bits (74), Expect = 0.42
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107
+ NL+I G L GP+G GKTTLL I
Sbjct: 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGG 53
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 71.2 bits (175), Expect = 1e-13
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 354 KVNFGLDMESR----VALVGPNGIGKST----FLNLLK---GELTPNKGELRKSPRLRIG 402
K + E L+GPNG GK+T L LL+ GE+T N G L + + RIG
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75
Query: 403 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRDLS 455
+ G L+P T + YL +L +P + +++L + I++LS
Sbjct: 76 YLPEERG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELS 132
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS-----H 508
G + ++ ++ P++LILDEP + LD +++ L +AI +G I+ S H
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192
Query: 509 DERLIRETDCELWALEKKNIRKFNGDFDDYR 539
E L C+ + KK G +D R
Sbjct: 193 VEEL-----CDRLLMLKKGQTVLYGTVEDIR 218
Score = 38.1 bits (89), Expect = 0.009
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++E + S + N + ++ G +GL+GPNG GKTT R I
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL 49
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 72.7 bits (179), Expect = 2e-13
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTP 388
+ L +++ P G+ LL ++NF + R+ + G +G GK++ L L G ++
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452
Query: 389 NKGE----LRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
L + P L G + + F D L K+ L R +
Sbjct: 453 PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV-GLGDLAER----LD 507
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-- 498
+ LSGG++ R+A A L L+ P + LDE T+ LD E+ D L + +K
Sbjct: 508 EEDRWDRV-----LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562
Query: 499 YQGGVILVSHDERLIR 514
VI V H L
Sbjct: 563 PDATVISVGHRPTLWN 578
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNSVD--IKVENFSLSAKGVELF-HNANLQIASGRRYG 89
LE + A + R D++ D I +EN SL + N ++ G R
Sbjct: 364 QALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLL 423
Query: 90 LVGPNGHGKTTLLRHIA 106
+ G +G GKT+LLR +A
Sbjct: 424 ITGESGAGKTSLLRALA 440
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 70.6 bits (173), Expect = 2e-13
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 340 DVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
+V++ Y G + VN + A+VG G GKST + + L P G +
Sbjct: 7 NVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66
Query: 395 --------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSR---- 434
+ R RIG Q LF D E + K F + ++ +
Sbjct: 67 DDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH 126
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
R L G + +SGGQ ++A+ + NPDI++LDEPT LD +S +
Sbjct: 127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR 186
Query: 495 AIKNYQ----GGVILVSHD 509
+K+ Q +ILVSHD
Sbjct: 187 LLKSLQTDENKTIILVSHD 205
Score = 34.4 bits (79), Expect = 0.12
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ H+ N + G+ Y +VG G GK+TL+++I
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 71.0 bits (174), Expect = 2e-13
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKS--------PRLR-IGKFDQHSGEHLFPDDT 417
L+GP+G GK+T L LL G P+ G + P LR I Q LFP T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMT 58
Query: 418 PCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470
E + +K+ +P + L + L +A P + LSGGQ+ RVALA +
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVALARALVF 117
Query: 471 NPDILILDEPTNNLDIESIDALAEAIKNYQG----GVILVSHDER 511
P IL+LDEP + LD + D + +K Q + V+HD+
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
Score = 29.8 bits (67), Expect = 4.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125
L+GP+G GKTTLLR +A P S ++ ++V
Sbjct: 1 LLGPSGCGKTTLLRLLA--GFEQPDSGSIMLDGEDV 34
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 69.7 bits (171), Expect = 2e-13
Identities = 67/209 (32%), Positives = 93/209 (44%), Gaps = 42/209 (20%)
Query: 326 PNPPYLPPPV-LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384
N L L L+ V+ Y G + +L +++ + VA+VG +G GKST L LL G
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60
Query: 385 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEK-------- 432
TP+ GEL G +DT LM F LP++K
Sbjct: 61 LETPSAGELLA------GTAPLAEAR----EDT---RLM--FQDARLLPWKKVIDNVGLG 105
Query: 433 --------SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
+ + L GL A+ P LSGGQK RVALA ++ P +L+LDEP L
Sbjct: 106 LKGQWRDAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGAL 164
Query: 485 D----IESIDALAEAIKNYQGGVILVSHD 509
D IE D + + + V+LV+HD
Sbjct: 165 DALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Score = 32.0 bits (73), Expect = 0.71
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ + +L I +G+ +VG +G GK+TLLR +A L PS+ +LL
Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA--GLETPSAGELL 70
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 72.3 bits (178), Expect = 3e-13
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 53/220 (24%)
Query: 317 REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESR-------VALVG 369
R ++F PP D YP K +F L++E + ++G
Sbjct: 322 RPEEIEFEEK-----PPRDDKARDTLVEYPDLKKTYG--DFKLEVEEGEIYDGEVIGILG 374
Query: 370 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG--------KFDQHSGEHLFPDDTPCEY 421
PNGIGK+TF+ LL G + P++G L++ +D + E L +
Sbjct: 375 PNGIGKTTFVKLLAGVIKPDEG---SEEDLKVSYKPQYISPDYD-GTVEDLLRSAIRSAF 430
Query: 422 --------LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473
++K NL R P+ +LSGG+ RVA+A D
Sbjct: 431 GSSYFKTEIVKPLNLEDLLER---------------PVDELSGGELQRVAIAAALSREAD 475
Query: 474 ILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHD 509
+ +LDEP+ LD+E +A+ I+ N + ++V HD
Sbjct: 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD 515
Score = 48.4 bits (116), Expect = 8e-06
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
V ++GPNGIGKST L +L GEL PN G P
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Score = 44.6 bits (106), Expect = 1e-04
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQGGV 503
+ +LSGG+ RVA+A L + D+ DEP++ LDI I LAE K V
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY----V 266
Query: 504 ILVSHD 509
I+V HD
Sbjct: 267 IVVEHD 272
Score = 35.7 bits (83), Expect = 0.060
Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 73/234 (31%)
Query: 38 FTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHG 97
F ++ + V+ + +F L + E I G G++GPNG G
Sbjct: 328 FEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGE--------IYDGEVIGILGPNGIG 379
Query: 98 KTTLLRHIATRALAIPSS-----IDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSK 152
KTT ++ +A + P + + Y Q + D V +L
Sbjct: 380 KTTFVKLLA--GVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLL-------------RS 424
Query: 153 LERDESGDNQ--------LRLTEVYD---------ELK--------SIEADA---AEPRA 184
R G + L L ++ + EL+ S EAD EP A
Sbjct: 425 AIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484
Query: 185 -----RRILAGLGFTTIYIPSSRV-HEIMRTWKKTLLVVSHDQSFLNNICTDII 232
+RI+ ++V + +KT LVV HD ++ + +I
Sbjct: 485 YLDVEQRIIV-----------AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
Score = 30.3 bits (69), Expect = 3.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 84 SGRRYGLVGPNGHGKTTLLR 103
G+ G++GPNG GK+T L+
Sbjct: 99 PGKVVGILGPNGIGKSTALK 118
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 69.2 bits (170), Expect = 3e-13
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 40/216 (18%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--- 391
+L + +++ YP GK L+ +N ++ VA++GP+G GKST L + + P+ G
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 392 ------------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----------KLFNL 428
+LRK R RIG QH +L T E ++ L
Sbjct: 61 LEGTDITKLRGKKLRKL-RRRIGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLG- 116
Query: 429 PYEKSRRQLGM-----FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
+ + ++ + GL A+ LSGGQ+ RVA+A PD+++ DEP +
Sbjct: 117 RFSEEDKERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 484 LDIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
LD ++ +D L K VI+ H L ++
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK 211
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++VEN S G + N NL I G ++GP+G GK+TLLR I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI 48
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 68.6 bits (169), Expect = 3e-13
Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 61/219 (27%)
Query: 336 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
+ + D +F + G L+ +N + VA+VGP G GKS+ L+ L GEL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPS 444
+ I Q P ++ LF P+++ R
Sbjct: 61 SVSVPGS--IAYVSQ----------EP--WIQNGTIRENILFGKPFDEER---------- 96
Query: 445 YAHTI------------PIRD----------LSGGQKARVALAELTLNNPDILILDEPTN 482
Y I P D LSGGQK R++LA ++ DI +LD+P +
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLS 156
Query: 483 NLDIESIDALAE-AIKNY-QGG--VILVSHDERLIRETD 517
+D + E I ILV+H +L+ D
Sbjct: 157 AVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHAD 195
Score = 37.8 bits (89), Expect = 0.007
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 34/132 (25%)
Query: 60 IKVENFSLSAKGVE-----LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA------TR 108
I VE+ S + E + NL++ G +VGP G GK++LL + +
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 109 ALAIPSSIDLLYCEQE---VEAS--DDSAVNIVLSA--DKNRV-KLLKECSKLERD---- 156
++++P SI Y QE + + NI+ D+ R K++K C+ LE D
Sbjct: 61 SVSVPGSI--AYVSQEPWIQNGTIRE----NILFGKPFDEERYEKVIKACA-LEPDLEIL 113
Query: 157 ESGDNQLRLTEV 168
GD TE+
Sbjct: 114 PDGDL----TEI 121
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 69.3 bits (170), Expect = 3e-13
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 44/202 (21%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKG 391
L L DV F Y + D+ VA++GP+G GKST LNL+ G TP G
Sbjct: 2 LALDDVRFSY-------GHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
Query: 392 ELRKSPRLRIGKFDQHSG-------------EH-LFPDDTPCEYL-------MKLFNLPY 430
E + I D H+ E+ LF T + + +KL
Sbjct: 55 E------ILINGVD-HTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQR 107
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 486
EK GL + +P +LSGGQ+ RVALA + IL+LDEP + LD
Sbjct: 108 EKVEAAAAQVGLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166
Query: 487 ESIDALAEAIKNYQGGVILVSH 508
E + +++ + +++V+H
Sbjct: 167 EMLALVSQLCDERKMTLLMVTH 188
Score = 34.2 bits (79), Expect = 0.13
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+L + +G ++GP+G GK+TLL IA
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIA 46
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 71.6 bits (176), Expect = 4e-13
Identities = 67/192 (34%), Positives = 93/192 (48%), Gaps = 41/192 (21%)
Query: 340 DVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKG 391
+VTF YPG +V L +NF + VALVG +G GKST NLL +GE+ +
Sbjct: 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405
Query: 392 ELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK----SRRQLGMFGLP 443
+LR S R ++ Q+ HLF +DT N+ Y + SR Q+
Sbjct: 406 DLRDYTLASLRNQVALVSQNV--HLF-NDTIAN------NIAYARTEQYSREQIEEAARM 456
Query: 444 SYA-----------HTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+YA T+ I + LSGGQ+ R+A+A L + ILILDE T+ LD ES
Sbjct: 457 AYAMDFINKMDNGLDTV-IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Query: 489 IDALAEAIKNYQ 500
A+ A+ Q
Sbjct: 516 ERAIQAALDELQ 527
Score = 30.8 bits (70), Expect = 2.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 59 DIKVENFSLSAKGVEL--FHNANLQIASGRRYGLVGPNGHGKTTL 101
DI+ N + + G E+ N N +I +G+ LVG +G GK+T+
Sbjct: 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 69.5 bits (170), Expect = 4e-13
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+ +L + ++ + Y G L+ +N + A++G NG GKST L G L P+
Sbjct: 1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 391 GEL----------RK---SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP------YE 431
G + RK R +G Q LF + NL +
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L G+ P LS GQK RVA+A + + P +L+LDEPT LD +
Sbjct: 121 RVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
Query: 492 LAEAIKNYQGG----VILVSHD 509
+ + + Q +I+ +HD
Sbjct: 180 IMKLLVEMQKELGLTIIIATHD 201
Score = 33.7 bits (77), Expect = 0.22
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 21/130 (16%)
Query: 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 128
+ G N+ I G ++G NG GK+TL +++ + PSS +L+ + ++ S
Sbjct: 16 SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNL--NGILKPSSGRILFDGKPIDYS 73
Query: 129 DDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK------SIEADAAEP 182
K +KL + + +D DNQL VY ++ + D
Sbjct: 74 -----------RKGLMKLRESVGMVFQDP--DNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 183 RARRILAGLG 192
R L G
Sbjct: 121 RVDNALKRTG 130
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 68.6 bits (168), Expect = 4e-13
Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G + + ++ + S L+GPNG GKST L ++ G L P GE+ + D
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-PWTRKDL 69
Query: 407 HSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLP-----SYAHTI--------PIR 452
H L ++P Y NL E + + GLP + + +
Sbjct: 70 HKIGSLI--ESPPLYE----NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK 123
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILVSH 508
S G K R+ +A LN+P +LILDEPTN LD I L E I+++ QG VIL SH
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++ +N S +N +L + YGL+GPNG GK+TLL+ I
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMI 46
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 71.3 bits (175), Expect = 5e-13
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 326 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
+P LP P+ G V F YP + L+ +N + VALVGP+G GKST
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384
Query: 381 LLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429
LL P G + R R+ L P D + N+
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMA---------LVPQDPVLFAASVMENIR 435
Query: 430 Y---EKSRRQLGMFGLPSYAHTIPIRD---------------LSGGQKARVALAELTLNN 471
Y + + ++ ++AH I LSGGQ+ R+A+A L +
Sbjct: 436 YGRPDATDEEVEAAARAAHAHEF-ISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494
Query: 472 PDILILDEPTNNLDIESIDALAEAI 496
IL+LDE T+ LD ES + +A+
Sbjct: 495 APILLLDEATSALDAESEQLVQQAL 519
Score = 33.5 bits (77), Expect = 0.36
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLR 103
NL + G LVGP+G GK+TL +
Sbjct: 360 NLTVRPGETVALVGPSGAGKSTLFQ 384
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 69.2 bits (169), Expect = 7e-13
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 22/157 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KS 396
G KV++ ++F + L+GPNG GKST +L G ++P++G++ +
Sbjct: 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHT 448
R+ IG Q ++L P+ T E L+ +F + S R+ L L S A
Sbjct: 75 ARVAIGVVPQF--DNLDPEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADV 131
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ LSGG K R+ LA +N+P +LILDEPT LD
Sbjct: 132 -RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Score = 35.3 bits (81), Expect = 0.067
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
V I + S S + ++ + IA G +GL+GPNG GK+T+ R +
Sbjct: 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARML 50
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 67.9 bits (166), Expect = 9e-13
Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 23/214 (10%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPR 398
G L+ VN + S VAL+GP+G GKST L ++ G P+ G + R R
Sbjct: 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR 70
Query: 399 LR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 450
R IG QH LF T + + +++ P K + + L + L P
Sbjct: 71 DRKIGFVFQHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP 128
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILV 506
LSGGQ+ RVALA P +L+LDEP LD + L ++ V + V
Sbjct: 129 -NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 507 SHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540
+HD+ E + + I + + Y
Sbjct: 188 THDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
Score = 40.2 bits (94), Expect = 0.001
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ N S + + NL++ +G L+GP+G GK+TLLR IA
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA 47
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 68.6 bits (168), Expect = 9e-13
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
L +V++ Y G + F +++ S A +G G GKST + LL G P +G +
Sbjct: 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64
Query: 394 R---------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKS-- 433
R K R ++G Q LF ++T + + + F + E++
Sbjct: 65 RVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEA 123
Query: 434 --RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
R +L + G+ +LSGGQ RVA+A + P IL+LDEPT LD +
Sbjct: 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183
Query: 492 LAEAIKN-YQGG--VILVSH 508
L K +Q G ++LV+H
Sbjct: 184 LMTLFKKLHQSGMTIVLVTH 203
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 67.0 bits (164), Expect = 1e-12
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 36/210 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P+L L +V + G +L ++F L + GP+G GKST L ++ ++P G L
Sbjct: 6 PLLQLQNVGY-LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 394 RKSPRLRIGKFDQHSGEHLFPDD-----TPCEYLMKLF------NL--PYE--------- 431
F+ L P+ + C LF NL P++
Sbjct: 65 L---------FEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPA 115
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
L F LP T I +LSGG+K R++L P +L+LDE T+ LD +
Sbjct: 116 IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 492 LAEAIKNY----QGGVILVSHDERLIRETD 517
+ E I Y V+ V+HD+ I D
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHAD 205
Score = 30.8 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 114
+NS ++++N A ++ +N + + +G + GP+G GK+TLL+ +A+ L P+
Sbjct: 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS--LISPT 60
Query: 115 SIDLLYCEQEV 125
S LL+ +++
Sbjct: 61 SGTLLFEGEDI 71
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 67.1 bits (165), Expect = 1e-12
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L + ++ GY G +L V+ + VAL+G NG GK+T L + G L P G +R
Sbjct: 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59
Query: 395 -------KSPRLR----IGKFDQHSGEHLFPDDTPCEYL-MKLFNLPYEKSRRQLG-MFG 441
P R IG + G +FP+ T E L + + K + +L ++
Sbjct: 60 DGRDITGLPPHERARAGIGYVPE--GRRIFPELTVEENLLLGAYARRRAKRKARLERVYE 117
Query: 442 L-P-------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493
L P A T LSGG++ +A+A ++ P +L+LDEP+ L + ++ +
Sbjct: 118 LFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172
Query: 494 EAIK--NYQG-GVILVSHDERLIRE 515
EAI+ +G ++LV + R E
Sbjct: 173 EAIRELRDEGVTILLVEQNARFALE 197
Score = 39.0 bits (92), Expect = 0.003
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN + ++ +L + G L+G NG GKTTLL+ I
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 68.0 bits (167), Expect = 2e-12
Identities = 56/229 (24%), Positives = 83/229 (36%), Gaps = 72/229 (31%)
Query: 341 VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------- 391
V+F G V ++ V+F L + +VG +G GKS + G L
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 392 ------------ELRK-----------------SPRLRIGKFDQHSGEHLFPDDTPCEYL 422
ELRK +P + IG + E L
Sbjct: 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD-------QI------AEVL 115
Query: 423 MKLFNLP-----YEKSRRQLGMFGLP-------SYAHTIPIRDLSGGQKARVALAELTLN 470
E++ L + G+P SY H +LSGG + RV +A
Sbjct: 116 RLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-----ELSGGMRQRVMIAMALAL 170
Query: 471 NPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
NP +LI DEPT LD+ +D L E + +IL++HD ++ E
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE 219
Score = 35.6 bits (83), Expect = 0.056
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++V+N F A V+ + ++ G G+VG +G GK+ L + I
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAI 51
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 66.1 bits (162), Expect = 2e-12
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
L +VT + G L+ +N + V L+GP+G GK+T L ++ G P G
Sbjct: 3 LENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG------ 55
Query: 398 RLRIGK----------------FDQHSGEHLFPDDTPCE---YLMKLFNLPY----EKSR 434
R+ IG F ++ L+P T + + +KL +P E+ R
Sbjct: 56 RIYIGGRDVTDLPPKDRDIAMVFQNYA---LYPHMTVYDNIAFGLKLRKVPKDEIDERVR 112
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESID 490
+ + P + LSGGQ+ RVAL + P + ++DEP +NLD ++
Sbjct: 113 EVAELLQIEHLLDRKP-KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 491 ALAEAIKNYQGGVILVSHDE 510
L + I V+HD+
Sbjct: 172 ELKRLQQRLGTTTIYVTHDQ 191
Score = 44.2 bits (105), Expect = 6e-05
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++EN + V + NL IA G L+GP+G GKTT LR IA
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA 47
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 66.8 bits (164), Expect = 2e-12
Identities = 64/233 (27%), Positives = 89/233 (38%), Gaps = 81/233 (34%)
Query: 338 LHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+V+F YP +L ++ + VALVG +G GKST ++LL
Sbjct: 3 FKNVSFRYPSRPDVPILKG-LSLTIPPGKTVALVGSSGCGKSTVVSLL------------ 49
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM--------------- 439
R +D SGE L ++ NL + R Q+G+
Sbjct: 50 ----ERF--YDPTSGEILLDGVD-----IRDLNLRW--LRSQIGLVSQEPVLFDGTIAEN 96
Query: 440 --FGLPS-------------YAHTIPIRDL---------------SGGQKARVALAELTL 469
+G P H I L SGGQK R+A+A L
Sbjct: 97 IRYGKPDATDEEVEEAAKKANIHDF-IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155
Query: 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
NP IL+LDE T+ LD ES + EA+ G I+++H RL IR D
Sbjct: 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH--RLSTIRNADL 206
Score = 31.7 bits (73), Expect = 0.80
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
S V + +L I G+ LVG +G GK+T++
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV 46
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 66.8 bits (164), Expect = 2e-12
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 52/205 (25%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN---------------LLKGE----LT 387
G K +L+ VN + A++GPNG GKST L GE L+
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 388 PN----KG------------ELRKSPRLRIGKFDQHSGEHLFPDDTP-CEYLMKLFNLPY 430
P+ G + S LR + + P+ + +L L
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
E R + SGG+K R + +L L P + ILDEP + LDI+++
Sbjct: 135 EFLERYVNE-------------GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK 181
Query: 491 ALAEAIKNYQG---GVILVSHDERL 512
+AE I + GV++++H +RL
Sbjct: 182 IVAEGINALREEGRGVLIITHYQRL 206
Score = 35.6 bits (83), Expect = 0.049
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 61 KVENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++++ + +G E+ NL + G + ++GPNG GK+TL I
Sbjct: 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM 51
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 69.1 bits (169), Expect = 2e-12
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 35/231 (15%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
+TF + + V+F VA+VGP G GK+T +NLL+ P G++
Sbjct: 337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396
Query: 394 -------RKSPRLRI-------GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
R+S R I G F++ E++ +++ + +
Sbjct: 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGAT-DEEVYEAAKAAAAHDFIL 455
Query: 440 FGLPSYAHTIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------ID 490
Y + R LSGG++ R+A+A L N IL+LDE T+ LD+E+ ID
Sbjct: 456 KRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID 515
Query: 491 ALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
AL + + +++H +R D L+ + + I K G F + +K
Sbjct: 516 ALRKNRTTF-----IIAHRLSTVRNADLVLFLDQGRLIEK--GSFQELIQK 559
Score = 33.7 bits (77), Expect = 0.30
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
F+ S++GV + + + +G+ +VGP G GKTTL+
Sbjct: 344 FANSSQGV---FDVSFEAKAGQTVAIVGPTGAGKTTLI 378
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 69.1 bits (169), Expect = 3e-12
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 25/144 (17%)
Query: 365 VALVGPNGIGKSTFLNLLKGELT---------PNKGELRKSPRLRIGKFDQHSGEHLFPD 415
+A++GP+G GKST LN L G + N + K R G Q + L+P
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD--DILYPH 154
Query: 416 DTPCEYLM--KLFNLPYEKSRRQ--------LGMFGLPSYAHTIP----IRDLSGGQKAR 461
T E L+ L LP ++++ + GL +TI IR +SGG++ R
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 462 VALAELTLNNPDILILDEPTNNLD 485
V++A L NP +LILDEPT+ LD
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 65.6 bits (160), Expect = 3e-12
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 37/172 (21%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
A+VGP+G GKST LNL+ G TP G R+ I D P D P L
Sbjct: 26 ITAIVGPSGSGKSTLLNLIAGFETPQSG------RVLINGVDV---TAAPPADRPVSMLF 76
Query: 424 K---LF---------------NLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 460
+ LF L RQ L GL +P +LSGG++
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-GELSGGERQ 135
Query: 461 RVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 508
RVALA + + + +L+LDEP LD E +D + + + V++V+H
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Score = 34.8 bits (80), Expect = 0.069
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 132
L A G +VGP+G GK+TLL IA P S +L +V A+ +
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIA--GFETPQSGRVLINGVDVTAAPPAD 69
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 66.3 bits (162), Expect = 3e-12
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS-------PRLRIGKFDQHSGEHLFPDDT 417
+ ++GPNGIGK+TF+ +L G L P++G++ P+ ++ + L
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS---- 83
Query: 418 PCEYLMKLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475
+ PY K+ + L + + +P +LSGG+ RVA+A + DI
Sbjct: 84 --SITKDFYTHPYFKTEIAKPLQIEQI--LDREVP--ELSGGELQRVAIAACLSKDADIY 137
Query: 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
+LDEP+ LD+E ++ I+ + + +V HD
Sbjct: 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175
Score = 30.1 bits (68), Expect = 2.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR----ALAIPSSIDLL- 119
F+L +G I+ G++GPNG GKTT ++ +A I +D +
Sbjct: 13 FTLEVEGGS--------ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS 64
Query: 120 YCEQEVEASDDSAVNIVLS 138
Y Q ++A + V +LS
Sbjct: 65 YKPQYIKADYEGTVRDLLS 83
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 66.2 bits (162), Expect = 4e-12
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 36/214 (16%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
P +L L V+ + G K L + ++F +D L+GPNG GK+T ++++ G+ P +G
Sbjct: 3 PIILYLDGVSVSFGGFKALND-LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61
Query: 392 -------ELRKSP-----RLRIG-KFDQHSGEHLFPDDTPCEYLM-----------KLFN 427
+L K P R IG KF + + +F + T E L LF
Sbjct: 62 VLFDGDTDLTKLPEHRIARAGIGRKFQKPT---VFENLTVRENLELALNRDKSVFASLFA 118
Query: 428 LPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
+ RR+ L GL LS GQK + + L +P +L+LDEP
Sbjct: 119 RLRAEERRRIDELLATIGLGDERD-RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177
Query: 484 LDIESIDALAEAIKNYQGG--VILVSHDERLIRE 515
+ + AE +K+ G +++V HD +RE
Sbjct: 178 MTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211
Score = 36.2 bits (84), Expect = 0.035
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
N + + ++ S+S G + ++ + + G L+GPNG GKTTL+
Sbjct: 2 NPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLM 48
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 65.8 bits (161), Expect = 4e-12
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 49/221 (22%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF---LNLLK----GEL---- 386
L D+T P G+ L+ L+GP+G GKS+ LNLL+ G L
Sbjct: 18 LFDITLDCPQGETLV--------------LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63
Query: 387 -------TPNKGELRKSPRLRIGK-FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSR 434
TP+ +R+ R +G F Q+ +L+P T + L ++ L +++
Sbjct: 64 NHFDFSKTPSDKAIREL-RRNVGMVFQQY---NLWPHLTVQQNLIEAPCRVLGLSKDQAL 119
Query: 435 RQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
+ L L YA P+ LSGGQ+ RVA+A + P +L+ DEPT LD E
Sbjct: 120 ARAEKLLERLRLKPYADRFPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
Query: 491 ALAEAIKNYQG-GV--ILVSHDERLIRETDCELWALEKKNI 528
+ I+ G+ ++V+H+ + R+T + +E +I
Sbjct: 179 QIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
Score = 33.1 bits (76), Expect = 0.34
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 66 SLSAKGVELF-------HNANLQIASGRRYGLVGPNGHGKTTLLR 103
S+ G+ F + L G L+GP+G GK++LLR
Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLR 46
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 66.3 bits (162), Expect = 4e-12
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLR 400
GGK LE +N L+ + ++GP+G GK+T LNL+ G + G + + P
Sbjct: 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE 71
Query: 401 IGKFDQHSGEHLFP-----DDTPCEYLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPI 451
G Q+ G L P D+ + ++L + + + L GL I
Sbjct: 72 RGVVFQNEG--LLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-YI 126
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQGG-VILVS 507
LSGGQ+ RV +A NP +L+LDEP LD E + L + G V+L++
Sbjct: 127 WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186
Query: 508 HD 509
HD
Sbjct: 187 HD 188
Score = 34.7 bits (80), Expect = 0.11
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ + G + NL + SG ++GP+G GKTTLL IA
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA 48
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 65.4 bits (160), Expect = 6e-12
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 39/173 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK---G 391
L+DV+ G+V+ A++G +G GK+T L+ + G + G
Sbjct: 20 ARILNDVSLHVESGQVM--------------AILGSSGSGKTTLLDAISGRVEGGGTTSG 65
Query: 392 E--LRKSPRLRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLPYEKSRRQLGM-- 439
+ PR + +F + ++ DD L + LP + S
Sbjct: 66 QILFNGQPR-KPDQFQKCVA-YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Query: 440 --FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L A T I +SGG++ RV++A L +P +LILDEPT+ LD
Sbjct: 124 EDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
Score = 36.5 bits (85), Expect = 0.022
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109
K + ++ +L + SG+ ++G +G GKTTLL I+ R
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 65.8 bits (161), Expect = 6e-12
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 340 DVTF--GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
TF G P K L ++ + V ++G NG GKST LN + G+L P G++
Sbjct: 8 TKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG 67
Query: 394 ----RKSPR---LRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSRRQLGMF 440
+KS + + Q P+ T E L K L + R+ F
Sbjct: 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSF 127
Query: 441 ---------GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IE 487
GL + I LSGGQ+ ++L TL+ P IL+LDE T LD
Sbjct: 128 RERLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 488 SIDALAEAIKNYQGGVILVSH 508
++ A+ ++ ++ ++V+H
Sbjct: 187 VMELTAKIVEEHKLTTLMVTH 207
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 64.9 bits (159), Expect = 8e-12
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDM-ESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
P+L L ++ + G K L ++ +D E RV ++GPNG GK+T ++++ G+ P++G
Sbjct: 1 PILYLEGLSVSFDGFKAL-NDLSLYVDPGELRV-IIGPNGAGKTTMMDVITGKTRPDEGS 58
Query: 392 ------ELRKSP-----RLRIG-KFDQHSGEHLFPDDTPCEYLM-------KLFNLPYEK 432
+L P R IG KF + + +F + T E L +F + +
Sbjct: 59 VLFGGTDLTGLPEHQIARAGIGRKFQKPT---VFENLTVFENLELALPRDKSVFASLFFR 115
Query: 433 SRR--------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
L GL A LS GQK + + L + +P +L+LDEP +
Sbjct: 116 LSAEEKDRIEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
Query: 485 DIESIDALAEAIKNYQGG--VILVSHDERLIRETDC 518
E + AE +K+ G V++V HD +R
Sbjct: 175 TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIAD 210
Score = 34.8 bits (81), Expect = 0.079
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+E S+S G + ++ +L + G ++GPNG GKTT++
Sbjct: 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM 45
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 65.9 bits (161), Expect = 8e-12
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 48/204 (23%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------------- 394
L+ V+ ++ +A++G G GK+TF+ L L P+ G +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 395 ------------------KSPRLRIGKFDQHSGEHLFPDDT-------PCEYLMKLFNLP 429
K R R+G Q + LF P +
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK-EEA 141
Query: 430 YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+++ + + + GL SY P +LSGGQK RVALA + PD L+ DEPT LD +
Sbjct: 142 KKRAAKYIELVGLDESYLQRSPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 489 IDALAEAIKN-YQGG--VILVSHD 509
+ + E N + G +ILV+HD
Sbjct: 201 VKEILEIFDNLNKQGKTIILVTHD 224
Score = 34.3 bits (79), Expect = 0.14
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N +++I G ++G G GKTT + H+ AL +P +
Sbjct: 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHL--NALLLPDT 61
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 64.9 bits (159), Expect = 9e-12
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 57/208 (27%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKG 391
L + ++ Y +L G+ +E ++G NG+GK+T L L G L G
Sbjct: 1 LEVSNLNVYYGQSHIL-----RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55
Query: 392 EL--------RKSPRLR----IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
+ + P R I Q G +FP T E NL G+
Sbjct: 56 SIRLDGEDITKLPPHERARAGIAYVPQ--GREIFPRLTVEE------NL-------LTGL 100
Query: 440 FGLPSYAHTIPIR-----------------DLSGGQKARVALAELTLNNPDILILDEPTN 482
LP + IP DLSGGQ+ ++A+A + P +L+LDEPT
Sbjct: 101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
Query: 483 NLDIESIDALAEAIK--NYQGG--VILV 506
+ I + I+ +GG ++LV
Sbjct: 161 GIQPSIIKDIGRVIRRLRAEGGMAILLV 188
Score = 32.9 bits (76), Expect = 0.28
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+V N ++ + +L++ G ++G NG GKTTLL+ +
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL 46
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 64.8 bits (158), Expect = 9e-12
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 30/194 (15%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG------ 391
+V++ GK +L+ ++ + + +VGP+G GKST + L+ + P +G
Sbjct: 6 FKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64
Query: 392 ---------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS---RRQLGM 439
+LR+ +IG Q HLF + T + + L EK+ L +
Sbjct: 65 VDIKTIDVIDLRR----KIGMVFQQP--HLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSI 117
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
GL T +++LSGG+ RV++A NNP++L+LDEPT+ LD S + + E I
Sbjct: 118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL 177
Query: 500 QGG----VILVSHD 509
+ VI ++H+
Sbjct: 178 KNKMNLTVIWITHN 191
Score = 35.2 bits (81), Expect = 0.070
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+I+ + S S+ G E+ + +++ G Y +VGP+G GK+TL++ I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI 49
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 66.2 bits (162), Expect = 1e-11
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 400
+ F G L+ NF L AL GP+G GK++ +N++ G P++G + + R+
Sbjct: 4 LNFRQRLGNFALD-ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL 62
Query: 401 IGKFDQHSGEHLFPDDTPCEYLM---KLF-------NLPY--EKSRRQ-----LGMFGLP 443
D G L P+ Y+ +LF NL Y KS R + + G+
Sbjct: 63 ---VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIE 119
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNY 499
P LSGG+K RVA+ L P++L++DEP +LD+ E + L
Sbjct: 120 HLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 500 QGGVILVSH 508
++ VSH
Sbjct: 179 NIPILYVSH 187
Score = 31.2 bits (71), Expect = 1.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 64 NFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
NF L +AN + + L GP+G GKT+L+ IA
Sbjct: 5 NFRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIA 45
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 64.8 bits (159), Expect = 1e-11
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P+L + +++ GY G L V+ ++ VAL+G NG GK+T L + G + P G +
Sbjct: 2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 394 --------RKSP----RLRIGKFDQHSGEHLFPDDTPCEYL-MKLFNLPYEKSRRQL--G 438
P RL I + G +FP T E L + + ++++ +
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPE--GRRIFPRLTVEENLLLGAYARRDKEAQERDLEE 118
Query: 439 MFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
++ L + LSGG++ +A+A ++ P +L+LDEP+ L + ++ + EA
Sbjct: 119 VYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178
Query: 496 IK--NYQGG--VILVSHDERLIRE 515
IK +GG ++LV + R E
Sbjct: 179 IKELRKEGGMTILLVEQNARFALE 202
Score = 39.4 bits (93), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN S ++ +L++ G L+G NG GKTTLL+ I
Sbjct: 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIM 50
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 64.9 bits (159), Expect = 1e-11
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 39/196 (19%)
Query: 334 PVLGLHDVTFGYPGGKVL--------LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P+L + ++ +P GK ++ V+F + + LVG +G GKST L+ G
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 386 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP-S 444
P GE+ F+ L ++ E+ L GLP
Sbjct: 63 EEPTSGEIL---------FEGKDITKLSKEER------------RERVLELLEKVGLPEE 101
Query: 445 YAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDA-----LAEAIKN 498
+ + P +LSGGQ+ R+ +A L LN P +++ DEP + LD+ S+ A L + +
Sbjct: 102 FLYRYP-HELSGGQRQRIGIARALALN-PKLIVADEPVSALDV-SVQAQILNLLKDLQEE 158
Query: 499 YQGGVILVSHDERLIR 514
+ +SHD ++R
Sbjct: 159 LGLTYLFISHDLSVVR 174
Score = 31.8 bits (73), Expect = 0.90
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ I G GLVG +G GK+TL R I
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLIL 60
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 65.6 bits (160), Expect = 1e-11
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 20/164 (12%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRI 401
L++V+F V +GPNG GKST + ++ G L P+ G ++ K + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDL 454
G +H+ L+ D EYL ++ + + +++ + + GL H I L
Sbjct: 78 GYLPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQL 134
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
S G + RV LA+ +++P +LILDEPT LD + + IKN
Sbjct: 135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
Score = 30.9 bits (70), Expect = 1.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 85 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125
GR G +GPNG GK+T ++ I T L P S + C ++V
Sbjct: 28 GRIVGFLGPNGAGKSTTMK-IITGYLP-PDSGSVQVCGEDV 66
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 65.5 bits (160), Expect = 1e-11
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRL 399
G ++ VNF + +GPNG GK+T + +L L P G R + PR
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63
Query: 400 ---RIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPY----EKSRRQLGMFGLPSYAHTI 449
IG Q++ + D T E L +L+ LP E++ L +F L A
Sbjct: 64 VRRSIGIVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADR 120
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILV 506
P+ SGG + R+ +A ++ PD+L LDEPT LD + I A+K ++L
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180
Query: 507 SHD 509
+H
Sbjct: 181 THY 183
Score = 35.8 bits (83), Expect = 0.048
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N ++ G +G +GPNG GKTT +R + T L P+S
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTT--LLRPTS 47
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 65.0 bits (158), Expect = 1e-11
Identities = 62/179 (34%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
L +V++ YP G LE +N + + ++G NG GKST L G L P KG++
Sbjct: 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
Query: 394 ------RKSPRLR--IGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR----RQLG 438
K +R +G Q+ E F T E L + LP + R R L
Sbjct: 64 IDTGDFSKLQGIRKLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALA 122
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL Y H P + LSGGQ VALA + P+ LI DE T+ LD +S A+ E IK
Sbjct: 123 EIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180
Score = 35.0 bits (80), Expect = 0.082
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I++EN S S G N NL I G G++G NG GK+TL H+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHL 48
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 65.1 bits (159), Expect = 2e-11
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
+F L + A+ G +G GK+T + L+ G P++GE+ + R FD G L
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL---FDSRKGIFLP 71
Query: 414 PDDTPCEYLMK---LF-------NLPYEKSR-----------RQLGMFGLPSYAHTIPIR 452
P+ Y+ + LF NL Y R R + + G+ +P
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-G 130
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSH 508
LSGG+K RVA+ L++P +L++DEP LD E + L + ++ VSH
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 509 D 509
Sbjct: 191 S 191
Score = 28.9 bits (65), Expect = 7.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
A+ + + G +G GKTTL+R IA
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIA 44
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 63.8 bits (156), Expect = 2e-11
Identities = 53/183 (28%), Positives = 70/183 (38%), Gaps = 53/183 (28%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---- 420
+ LVGPNG GKST L + G L P G ++ F E + E
Sbjct: 25 LHLVGPNGAGKSTLLARMAG-LLPGSGSIQ---------FAGQPLEAW----SAAELARH 70
Query: 421 --YL----MKLFNLP---Y-----------EKSRRQL----GMFGLPSYAHTIPIRDLSG 456
YL F +P Y E L GL + LSG
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-SVNQLSG 129
Query: 457 GQKARVALAELTL-----NNPD--ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 507
G+ RV LA + L NP +L+LDEP N+LD+ AL + QG +++S
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189
Query: 508 -HD 509
HD
Sbjct: 190 SHD 192
Score = 33.8 bits (78), Expect = 0.18
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ ++ +G LVGPNG GK+TLL +A
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMA 43
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 63.9 bits (156), Expect = 2e-11
Identities = 58/203 (28%), Positives = 80/203 (39%), Gaps = 54/203 (26%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
L+D++ P GK+ AL+GPNG GKST L LTP G +
Sbjct: 18 LNDLSLSLPTGKI--------------TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD 63
Query: 394 ----RKSPRL---RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----------EKSRRQ 436
S R R+ QH HL P+ L+ P+ + +R
Sbjct: 64 KPISMLSSRQLARRLALLPQH---HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVN 120
Query: 437 LGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----E 487
M + DLSGGQ+ R LA + + +++LDEPT LDI E
Sbjct: 121 QAM----EQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 488 SIDALAEAIKNYQGG-VILVSHD 509
+ + E N QG V+ V HD
Sbjct: 177 LMRLMREL--NTQGKTVVTVLHD 197
Score = 39.2 bits (92), Expect = 0.003
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN ++ + ++ +L + +G+ L+GPNG GK+TLL+ A
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA 49
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 63.4 bits (155), Expect = 3e-11
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 28/194 (14%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
L L D+T+ Y L + + ++ RVA++GP+G GKST LNL+ G LTP G L
Sbjct: 2 LKLTDITWLYHH---LPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58
Query: 394 ------RKSPRLRIGK--FDQHSGEHLFPDDTPCEYL-------MKLFNLPYEKSRRQLG 438
P R F +++ LF T + + +KL EK
Sbjct: 59 NGQDHTTTPPSRRPVSMLFQENN---LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR 115
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
G+ +P LSGGQ+ RVALA + IL+LDEP + LD E + +++
Sbjct: 116 QMGIEDLLARLP-GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
Query: 495 AIKNYQGGVILVSH 508
+ Q +++VSH
Sbjct: 175 VCQERQLTLLMVSH 188
Score = 33.8 bits (78), Expect = 0.15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+L + G R ++GP+G GK+TLL IA
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIA 46
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 65.5 bits (160), Expect = 3e-11
Identities = 73/258 (28%), Positives = 109/258 (42%), Gaps = 65/258 (25%)
Query: 303 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGL 359
D ++ +LL+ E V P+ P L P LG +V+F Y + +L ++F +
Sbjct: 230 LTDMEKMFDLLDVEAE--VSDA-PDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTI 286
Query: 360 DMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELR----KSPRLRIGKFDQHS 408
+ VA+VG +G GKST L LL G +T + ++R +S R IG
Sbjct: 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG------ 340
Query: 409 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP--------SYAHTIPIRD------- 453
+ P DT LFN + +G P + A I D
Sbjct: 341 ---IVPQDTV------LFN----DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE 387
Query: 454 ------------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
LSGG+K RVA+A L NP ILILDE T+ LD + A+ A++
Sbjct: 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447
Query: 502 G--VILVSHDERLIRETD 517
G ++++H I + D
Sbjct: 448 GRTTLVIAHRLSTIIDAD 465
Score = 30.0 bits (68), Expect = 3.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ + I G+ +VG +G GK+T+LR
Sbjct: 280 NGISFTIPLGKTVAIVGESGAGKSTILR 307
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 65.3 bits (160), Expect = 3e-11
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P L + +PG K L + ++F AL+G NG GKST L +L G P+ G
Sbjct: 2 SPYLSFDGIGKTFPGVKAL-DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 393 LR---KSPRLRIGKFDQHSG------E-HLFPDDTPCEYLMKLFNLP-----------YE 431
+ + R +G E HL P+ T E L L LP
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY-LGQLPHKGGIVNRRLLNY 119
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
++R QL G+ T P++ LS GQ+ V +A+ N ++ DEPT++L I+
Sbjct: 120 EAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 492 LAEAIKNY--QGGVIL-VSH 508
L I+ +G VIL VSH
Sbjct: 179 LFRVIRELRAEGRVILYVSH 198
Score = 36.0 bits (84), Expect = 0.048
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 21/72 (29%)
Query: 450 PIRDLSGG--QKARVA--LAELTLNNPDILILDEPTNNLDI-------ESIDALAEAIKN 498
I +LSGG QKA + L+E + +++LDEPT +D+ I LA
Sbjct: 393 LIMNLSGGNQQKAILGRWLSE----DMKVILLDEPTRGIDVGAKHEIYNVIYELAA---- 444
Query: 499 YQG-GVILVSHD 509
QG V+ VS D
Sbjct: 445 -QGVAVLFVSSD 455
Score = 29.9 bits (68), Expect = 4.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
GV+ + + +G+ + L+G NG GK+TLL+
Sbjct: 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLK 48
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 62.8 bits (153), Expect = 5e-11
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLR 400
G +L ++ +D V ++GP+G GKST L + G+L P++
Sbjct: 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVD 71
Query: 401 IGKFDQHSGE-----HLFPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAH 447
Q +G +LFP T E +M ++ E++ +Q L GL AH
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH 131
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
P +LSGGQ+ RVA+A P +++ DEPT+ LD E
Sbjct: 132 HYP-SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170
Score = 36.6 bits (85), Expect = 0.021
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I+ +N S ++ HN +L I G ++GP+G GK+TLLR I L +S DL+
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI--NKLEEITSGDLI 59
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 63.9 bits (156), Expect = 6e-11
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIGKFD-----QHSGEHLFPD 415
V L+GP+G GK+T L ++ G G + R RL K D Q LFP+
Sbjct: 33 VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPN 90
Query: 416 DTPCEYL-MKLFNLPYEKSRRQ------LGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468
T + + L N ++ L + GLP P + LSGGQ+ RVALA
Sbjct: 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-LSGGQQQRVALARAL 149
Query: 469 LNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GV--ILVSHDE 510
+P +L+LDEP + LD + L I+ Q GV I+V+HD+
Sbjct: 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Score = 36.6 bits (85), Expect = 0.034
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ +L + G L+GP+G GKTTLLR IA
Sbjct: 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIA 51
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 63.9 bits (155), Expect = 6e-11
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 44/196 (22%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD- 405
G +L+ ++ ++ +AL+G +G GK+T L + G + + R+ I D
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG----LTGRIAIADRDL 71
Query: 406 QHSGEH------------LFPDDTPCEYLMKLFNLPYEKSRRQ------------LGMFG 441
H+ H LFP + + F L ++++ L + G
Sbjct: 72 THAPPHKRGLALLFQNYALFPHLKVEDNVA--FGL---RAQKMPKADIAERVADALKLVG 126
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD-------IESIDALAE 494
L A +P LSGG + R+A+A PD+L+LDEP + LD E I AL E
Sbjct: 127 LGDAAAHLP-AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185
Query: 495 AIKNYQGGVILVSHDE 510
+ ++ V+HD+
Sbjct: 186 ELPELT--ILCVTHDQ 199
Score = 37.3 bits (86), Expect = 0.018
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++++ ++ + + +L+I +G L+G +G GKTTLLR IA
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIA 52
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 62.5 bits (152), Expect = 6e-11
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 41/194 (21%)
Query: 358 GLDMESR----VALVGPNGIGKSTFL---NLLK---------GELTPNKGELRKSPRLRI 401
G+D+E + VA++GP+G GK+T L NLL+ G++T + + I
Sbjct: 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80
Query: 402 GKFDQHSGE-----HLFPDDTPCEYLMK----LFNLPYE----KSRRQLGMFGLPSYAHT 448
+ QH G +LFP T E +++ + P E ++R L GL +
Sbjct: 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS 140
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQG 501
P R LSGGQ+ RVA+A P++++ DEPT+ LD E +I LA+ +
Sbjct: 141 YP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRT--- 196
Query: 502 GVILVSHDERLIRE 515
+++V+H+ R+
Sbjct: 197 -MVIVTHEMSFARD 209
Score = 42.8 bits (101), Expect = 2e-04
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I+V+N G + H +L++ G ++GP+G GKTTLLR I L P + +
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI--NLLEQPEAGTIR 61
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKE 149
+ ++ + LS K ++ L++
Sbjct: 62 VGDITIDTA------RSLSQQKGLIRQLRQ 85
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 62.8 bits (153), Expect = 6e-11
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Query: 334 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ +V+F Y L+ V+F + ++VG NG GKST L+ G GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 393 L--RKSP---------RLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQ-- 436
+ R IG Q+ ++ F + ++ +PY++ R+
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNP-DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
L + A P LSGGQK RVA+A + NP ++ILDE T+ LD ++ L +
Sbjct: 125 EALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
Query: 495 AIKNYQGG----VILVSHD 509
++ + +I ++HD
Sbjct: 184 LVRKVKSEHNITIISITHD 202
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 61.8 bits (150), Expect = 7e-11
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPR---LRIGKFDQHSGE 410
D + L+GPNG GK+T L + G + P KG ++ SP IG Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQ---R 57
Query: 411 HLFPDDTPCEY----------LMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSG 456
H F D P + P + R L GL A P+ +LSG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSG 116
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHD 509
GQ+ RV +A P +L+LDEP LD+ + + L E G +++ +HD
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Score = 36.0 bits (83), Expect = 0.033
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 80 LQIASGRRYGLVGPNGHGKTTLLRHI 105
L G GL+GPNG GKTTLLR I
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAI 26
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 62.8 bits (152), Expect = 8e-11
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 28/234 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNK 390
++ V + Y + F +D+E S AL+G G GKST L L G L P +
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 391 GELR---------------KSPRLRIGKFDQHSGEHLFPDDT--PCEYLMKLFNLPYEKS 433
G++ K R ++G Q LF + + + F +P EK+
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 434 RR----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 488
+ +L M GL +LSGGQ RVA+A + P++L+LDEPT LD ++
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 489 --IDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540
+ L E+I V+LV+H + + ++ LEK +I D ++E
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 62.0 bits (151), Expect = 8e-11
Identities = 50/165 (30%), Positives = 67/165 (40%), Gaps = 35/165 (21%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPR 398
G V L+ V+ + VAL+GP+G GK+T L L+ G P+ G + +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 399 LR-IGKFDQHSGEHLFPDDT-----------------PCEYLMKLFNLPYEKSRRQLGMF 440
R +G QH LF T P E ++ K L +
Sbjct: 73 ERNVGFVFQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIR------AKVHELLKLV 124
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L A P LSGGQ+ RVALA P +L+LDEP LD
Sbjct: 125 QLDWLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
Score = 43.9 bits (104), Expect = 9e-05
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+V N S + +L I SG L+GP+G GKTTLLR IA
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA 49
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 62.2 bits (151), Expect = 8e-11
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 40/213 (18%)
Query: 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL---------------- 382
DVT + G +L+ +NF + +VAL+GP+G GKST L +L
Sbjct: 4 SDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62
Query: 383 --------KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD----DTPCEYLMKLFNLPY 430
G L P + + R +IG Q +LFP D E + + +
Sbjct: 63 QLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 431 EKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
++ ++ L M GL A +P + LSGGQ+ RVA+A P +++ DE T+ LD
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
Query: 487 ESIDALAEAIKN----YQGGVILVSHDERLIRE 515
E + + I+ + ++LV+H+ RE
Sbjct: 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212
Score = 33.3 bits (76), Expect = 0.29
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107
N +A+G + L+GP+G GK+T+LR + T
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMT 48
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 61.6 bits (150), Expect = 1e-10
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-------RKSP-- 397
G + V+F + L+GPNG GK+T + +L L P G + P
Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70
Query: 398 -RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTI 449
R RIG Q + + T E L +L+ +P + R + L GL A +
Sbjct: 71 VRRRIGIVFQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL 128
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
++ SGG + R+ +A ++ P++L LDEPT LD ++ + E I+
Sbjct: 129 -VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Score = 43.1 bits (102), Expect = 1e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+VEN E + ++ G +GL+GPNG GKTT ++ + T L P+S
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT--LLKPTS 54
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 62.7 bits (153), Expect = 1e-10
Identities = 60/204 (29%), Positives = 83/204 (40%), Gaps = 41/204 (20%)
Query: 340 DVTFGY----PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
V Y P + L VN + S VA++G G GKST L L G L P G +
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 395 --------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYE-- 431
K R ++G Q LF E + K F + E
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-----ETVEKDICFGPMNFGVSEEDA 121
Query: 432 --KSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--- 485
K+R + + GLP P +LSGGQ RVA+A + P++L+LDEPT LD
Sbjct: 122 KQKAREMIELVGLPEELLARSPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180
Query: 486 -IESIDALAEAIKNYQGGVILVSH 508
E ++ + K +LV+H
Sbjct: 181 RKEMMEMFYKLHKEKGLTTVLVTH 204
Score = 30.8 bits (70), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHI 105
N+ I SG ++G G GK+TLL+H+
Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHL 53
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 63.7 bits (155), Expect = 1e-10
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 60/259 (23%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGE------------ 392
GK +L+ ++F ++ + ++G +G GKS +++L+G + P G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 393 --------------------------------LRKSPRLRIGKFDQHSGEHLFPDDTPCE 420
LR+ R RI Q + L+ DDT +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDDTVLD 129
Query: 421 YLMK-LFNLPYEKSR---RQLGMFGLPSYAHTIP--IRDLSGGQKARVALAELTLNNPDI 474
+++ L + YE R + + + +H I RDLSGG+K RV LA P +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 475 LILDEPTNNLDIESI----DALAEAIKNYQGGVILVSHDERLIRE-TDCELWALEKKNIR 529
+ DEPT LD ++ +AL EA+K ++L SH +I + +D +W LE I+
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW-LENGEIK 248
Query: 530 KFNGDFDDYREKLLTSLGE 548
+ G D+ + + E
Sbjct: 249 E-EGTPDEVVAVFMEGVSE 266
Score = 62.5 bits (152), Expect = 3e-10
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 44/186 (23%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL------------RKSPRLR------IGKFDQHS 408
+VG +G GK+T ++ G L P GE+ + P R IG Q
Sbjct: 315 IVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374
Query: 409 GEHLFPDDTPCEYLMKL--FNLPYEKSRRQ----LGMFG---------LPSYAHTIPIRD 453
L+P T + L + LP E +R + L M G L Y
Sbjct: 375 D--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE----- 427
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 509
LS G++ RVALA++ + P I+ILDEPT +D + + +I + + I+VSHD
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 510 ERLIRE 515
+ +
Sbjct: 488 MDFVLD 493
Score = 35.5 bits (82), Expect = 0.070
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
I+V+N + G E+ N + I G G++G +G GK+ L+
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLM 43
Score = 30.5 bits (69), Expect = 2.7
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 IKVEN-----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
IKV N S+ V+ N +L++ G +G+VG +G GKTTL + IA
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIA 331
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 63.2 bits (154), Expect = 2e-10
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 42/224 (18%)
Query: 334 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L L D+ YP G+ +L+ ++ + VA+VG +G GKST +N+L P
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 391 GELRKS------------PRLRIGKFDQHSG-----EHLFPDDT-------PCEYLMKLF 426
G R + +LR +H G HL T P Y
Sbjct: 63 GTYRVAGQDVATLDADALAQLR----REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER 118
Query: 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+++ L GL P LSGGQ+ RV++A +N +++ DEPT LD
Sbjct: 119 KQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 487 ESIDALAEAIK--NYQG-GVILVSHD-------ERLIRETDCEL 520
S + + + +G VI+V+HD ER+I D E+
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
Score = 29.7 bits (67), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
VE+ +L I +G +VG +G GK+TL+
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLM 51
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 62.6 bits (152), Expect = 2e-10
Identities = 49/181 (27%), Positives = 68/181 (37%), Gaps = 52/181 (28%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
V FG +L+ V+ + S V LVGPNG GK+T L + G LTP G +
Sbjct: 10 SVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT------V 60
Query: 400 RIGKFDQHS------GEHL--FPDDTPCEYLMKLFNLPYEKSRRQ---------LGMFGL 442
+ D + + P DT +L +E RQ F
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDT---------SLSFEFDVRQVVEMGRTPHRSRFDT 111
Query: 443 PSYAHTI-----------------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ P+ LSGG++ RV LA +L+LDEPT +LD
Sbjct: 112 WTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
Query: 486 I 486
I
Sbjct: 172 I 172
Score = 44.1 bits (104), Expect = 1e-04
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I V + S+ + +L + G GLVGPNG GKTTLLR I
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAI 49
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 61.2 bits (148), Expect = 2e-10
Identities = 70/216 (32%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
+L D+ F Y VL + +N + LVG NG GKST L G L P KG
Sbjct: 1 MLATSDLWFRYQDEPVL-KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59
Query: 393 -----LRKSPR----LR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR--- 435
L S R LR + Q + +F D + L NL E +RR
Sbjct: 60 WQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDE 119
Query: 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
L + + H PI+ LS GQK RVA+A + L+LDEPT LD +
Sbjct: 120 ALTLVDAQHFRHQ-PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 496 IKNY--QGG-VILVSHDERLIRETDCELWALEKKNI 528
I+ QG VI+ SHD LI E ++ L + I
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 62.7 bits (153), Expect = 3e-10
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 53/213 (24%)
Query: 341 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----------- 388
VTF Y P G ++L+ V+ ++ VA+VGP+G GKST L LL G TP
Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516
Query: 389 ----NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-------LPYEKSRRQL 437
+ +R+ ++G Q+ L +F L +++
Sbjct: 517 LAGLDVQAVRR----QLGVVLQNG--RLMSGS--------IFENIAGGAPLTLDEAWEAA 562
Query: 438 GMFGL-------PSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
M GL P HT+ I + LSGGQ+ R+ +A + P IL+ DE T+ LD
Sbjct: 563 RMAGLAEDIRAMPMGMHTV-ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 487 ESIDALAEAIKNYQGGVILVSHDERL--IRETD 517
+ ++E+++ + I+++H RL IR D
Sbjct: 622 RTQAIVSESLERLKVTRIVIAH--RLSTIRNAD 652
Score = 38.4 bits (90), Expect = 0.009
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 53 VDDNSVD-------IKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
VD+ D I+V+ F G + + +LQI G +VGP+G GK+TLLR
Sbjct: 438 VDEAKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLR 497
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 62.0 bits (150), Expect = 3e-10
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 29/169 (17%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKG---------------ELRKSPRLRIGKFDQHSGEH 411
++G +G GKST + LL + P +G ELR+ R +I Q
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA-- 116
Query: 412 LFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVAL 464
L P T + + M+L + E+ R + L GL +YAH+ P +LSGG + RV L
Sbjct: 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-DELSGGMRQRVGL 175
Query: 465 AELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 509
A NPDIL++DE + LD E D L + +Q ++ +SHD
Sbjct: 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 60.0 bits (146), Expect = 4e-10
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------------ 394
GG + + VN + + V+L+GPNG GK+T N L G P G +
Sbjct: 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLM-------------KLFNLP-YEKSRRQ---- 436
+ R+ + + QH LF + T E L+ L P + ++ +
Sbjct: 76 QIARMGVVRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDR 133
Query: 437 ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
L GL +A+ +L+ GQ+ R+ +A + P+IL+LDEP L+ + L
Sbjct: 134 AATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 493 AEAI----KNYQGGVILVSHDERLI 513
E I + V+L+ HD +L+
Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLV 217
Score = 28.8 bits (65), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ V + G+ +N NL++ L+GPNG GKTT
Sbjct: 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTT 46
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 60.1 bits (146), Expect = 5e-10
Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 59/187 (31%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ LVGPNGIGKST L +L G+L PN G+ P D+ G L Y K
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWD-EILDEFRGSELQ------NYFTK 81
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIP---------------------------------- 450
L + + P Y IP
Sbjct: 82 LLEGDVKVIVK-------PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD 134
Query: 451 --IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI------KNYQGG 502
I LSGG+ RVA+A + D DEP++ LDI+ A I NY
Sbjct: 135 RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY--- 191
Query: 503 VILVSHD 509
V++V HD
Sbjct: 192 VLVVEHD 198
Score = 29.6 bits (67), Expect = 3.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 83 ASGRRYGLVGPNGHGKTTLLRHIA 106
G+ GLVGPNG GK+T L+ +A
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILA 47
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 61.5 bits (150), Expect = 6e-10
Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 57/229 (24%)
Query: 334 PVLGLHD--VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
P+L + + V F GG V ++ ++F ++ +ALVG +G GKS + G L P+
Sbjct: 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG-LLPSP 63
Query: 391 GELRKSPRLRIGKFDQHSGEHLFPDDTPC-------------------------EYLMKL 425
S + FD + + L ++
Sbjct: 64 AAAHPSGSIL---FDGEDLLAA-SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 426 FNLPYEKSRRQ--------LGMFGLP-------SYAHTIPIRDLSGGQKARVALAELTLN 470
L SR L + G+P +Y H +LSGGQ+ RV +A N
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH-----ELSGGQRQRVMIAMALAN 174
Query: 471 NPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRE 515
PD+LI DEPT LD + +D L E ++ ++HD ++R+
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223
Score = 55.7 bits (135), Expect = 4e-08
Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 72/243 (29%)
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEK----------VNFGLDMESRVALVGPNGIGK 375
P P P +L + D+ +P L + ++ L + LVG +G GK
Sbjct: 267 PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326
Query: 376 STF-LNLLKGELTPNKGELR-------------------------------KSPRLRIGK 403
ST L LL+ L P++GE+R SPR+ +G
Sbjct: 327 STLGLALLR--LIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG- 383
Query: 404 FDQHSGEHLF---PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-----YAHTIPIRDLS 455
Q E L P + E ++ L GL Y H + S
Sbjct: 384 --QIIEEGLRVHEPKLSAAERD--------QRVIEALEEVGLDPATRNRYPH-----EFS 428
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDER 511
GGQ+ R+A+A + P++++LDEPT+ LD + +D L + + + + +SHD
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488
Query: 512 LIR 514
++R
Sbjct: 489 VVR 491
Score = 34.2 bits (79), Expect = 0.19
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 53 VDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKT----TLLRHIATR 108
+ + SV E + VE + I +G LVG +G GK+ ++L + +
Sbjct: 9 IRNLSVAFHQEGGT-----VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSP 63
Query: 109 ALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
A A PS +L+ +++ A+ + + V
Sbjct: 64 AAAHPSG-SILFDGEDLLAASERQLRGVRGNK 94
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 59.0 bits (143), Expect = 6e-10
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELR------------KSPRLRIGKFDQHSGE-- 410
+AL+G +G GKST L +L G + GE+ +LR +H G
Sbjct: 39 IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA----KHVGFVF 94
Query: 411 ---HLFPDDTPCE--YLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 460
L P E L L + R L GL +P + LSGG++
Sbjct: 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQ 153
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERL---- 512
RVALA PD+L DEPT NLD ++ D +A+ + + + +ILV+HD +L
Sbjct: 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARC 213
Query: 513 ---IRETDCELW 521
+R + +L
Sbjct: 214 DRRLRLVNGQLQ 225
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 58.0 bits (140), Expect = 7e-10
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 49/149 (32%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGPNG GK+T + +L G+L PN + +
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGITPV---------------------- 64
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
Y+ P Y DLSGG+ RVA+A L N + DEP+ L
Sbjct: 65 -----YK-----------PQYI------DLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102
Query: 485 DIESIDALAEAIKNY----QGGVILVSHD 509
DIE A AI+ + ++V HD
Sbjct: 103 DIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Score = 29.8 bits (67), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIA 106
+ G G+VGPNG GKTT ++ +A
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILA 46
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 59.4 bits (144), Expect = 9e-10
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 338 LHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ ++TF Y K L V+F + ++++G NG GKST + L+ G L G++
Sbjct: 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66
Query: 396 SP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYE--KSRRQ--LG 438
R +IG Q+ + L N +P+E K R L
Sbjct: 67 DGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALE 126
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+ G+ + P R LSGGQK RVA+A P I+ILDE T+ LD E L + IK
Sbjct: 127 LVGMQDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185
Query: 499 ----YQGGVILVSHD 509
YQ VI ++HD
Sbjct: 186 IRDDYQMTVISITHD 200
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 59.0 bits (143), Expect = 1e-09
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 40/219 (18%)
Query: 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------- 393
FG +L V+ ++ V L+G +G GKST LL G P +G +
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77
Query: 394 -----RKSPRLRIGKFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQ----- 436
R++ R + Q S + P T P +L L ++S ++
Sbjct: 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL-----DESEQKARIAE 132
Query: 437 -LGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDA 491
L M GL S A +P R LSGGQ R+ +A P +++LDE +NLD+ I
Sbjct: 133 LLDMVGLRSEDADKLP-RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191
Query: 492 LAEAIKNYQGGV--ILVSHDERLIRETDCELWALEKKNI 528
L ++ G + ++HD RL++ + ++K I
Sbjct: 192 LLRKLQQ-AFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
Score = 30.2 bits (68), Expect = 2.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLR 103
N +L I G GL+G +G GK+TL R
Sbjct: 28 TNVSLSIEEGETVGLLGRSGCGKSTLAR 55
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 58.7 bits (142), Expect = 1e-09
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------------- 394
++ V+F L +A++G NG GKST +L G + P GE+
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 395 -----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
+PRLRIG+ L D P + ++F + R +G+ LP
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQI-LDFPLRLNTDLEPEQRRKQIFE-----TLRMVGL--LP 140
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+A+ P L+ GQK RVALA + P I+I DE +LD
Sbjct: 141 DHANYYP-HMLAPGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 58.6 bits (142), Expect = 1e-09
Identities = 57/196 (29%), Positives = 85/196 (43%), Gaps = 43/196 (21%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
+++ P GK+ A++GP+GIGK+T L L+ G++ P+ GE
Sbjct: 25 NISLTVPRGKI--------------TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70
Query: 393 ---LRKS----PRLRIGKFDQHSGEHLFPDDTPCEY----LMKLFNLPYEKSRRQLGM-- 439
+ +S R R+ Q SG LF D + L + LP + M
Sbjct: 71 IPAMSRSRLYTVRKRMSMLFQ-SGA-LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKL 128
Query: 440 --FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL A +P +LSGG R ALA PD+++ DEP D ++ L + I
Sbjct: 129 EAVGLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLIS 187
Query: 498 --NYQGGV--ILVSHD 509
N GV ++VSHD
Sbjct: 188 ELNSALGVTCVVVSHD 203
Score = 39.4 bits (92), Expect = 0.003
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
N VD++ +F+ + +F N +L + G+ ++GP+G GKTTLLR I
Sbjct: 5 ANLVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLI 53
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 58.7 bits (142), Expect = 2e-09
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 340 DVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK--- 395
V+F YP K L ++F + S AL+G NG GKST L+ G L P+ K
Sbjct: 10 HVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV 69
Query: 396 -----------SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKS----RRQLG 438
R ++G Q+ + L N +P + R L
Sbjct: 70 DGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA 129
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
G+ Y + P +LSGGQK RVA+A + P I+ILDE T+ LD + + + I+
Sbjct: 130 DVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRK 188
Query: 499 YQG----GVILVSHD 509
+ VI ++HD
Sbjct: 189 LKKKNNLTVISITHD 203
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 59.6 bits (145), Expect = 2e-09
Identities = 51/177 (28%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 325 FPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 383
FP P P L L +VTF Y + +N + + L+G NG GKST LL
Sbjct: 311 FPRPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370
Query: 384 GELTPNKGELRKSPRL----RIGKFDQH-----SGEHLF-----PDDTPCEYLMKLFNLP 429
G P GE+ + + + + + HLF P+ P
Sbjct: 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN------PAL 424
Query: 430 YEKSRRQLGMFGLPSYAHTIPIRD-------LSGGQKARVALAELTLNNPDILILDE 479
EK +L M AH + + D LS GQK R+AL DIL+LDE
Sbjct: 425 VEKWLERLKM------AHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
Score = 28.8 bits (65), Expect = 9.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 138
NL I G L+G NG GK+TL + L P S ++L + V A + S
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLT--GLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400
Query: 139 A 139
A
Sbjct: 401 A 401
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 58.2 bits (141), Expect = 2e-09
Identities = 60/203 (29%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---- 394
H G + +L V+ L VAL+G +G GKST LL G +P++G +
Sbjct: 15 HGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74
Query: 395 ---KSPRLRIGKFD-------QHSGEHLFPDDTPC----EYLMKLFNL-PYEKSRRQLGM 439
K R + F Q S + P T E L L +L E+ R M
Sbjct: 75 PLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEM 134
Query: 440 F---GL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDA 491
L S P LSGGQ RV LA P +LILDE +NLD+ I
Sbjct: 135 LRAVDLDDSVLDKRP-PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 492 LAEAIKNYQGGVILVSHDERLIR 514
L + + + + ++HD RL+
Sbjct: 194 LKKLQQQFGTACLFITHDLRLVE 216
Score = 30.0 bits (68), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLR 103
+N +L + SG L+G +G GK+TL R
Sbjct: 29 NNVSLSLKSGETVALLGRSGCGKSTLAR 56
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 57.7 bits (140), Expect = 2e-09
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 41/203 (20%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN-------- 389
++ Y G K L+ +N + AL+GP+G GKST L L +L P
Sbjct: 6 NLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL 64
Query: 390 -KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----------------- 430
G+ ++ + + + G +F P + M ++ N+ Y
Sbjct: 65 FDGQDIYDKKIDVVELRRRVG-MVFQKPNP--FPMSIYDNIAYGPRLHGIKDKKELDEIV 121
Query: 431 EKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
E+S ++ ++ + H + LSGGQ+ R+ +A P++L+LDEPT+ LD +
Sbjct: 122 EESLKKAALWDEVKDRLHDSALG-LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180
Query: 490 DALAEAI----KNYQGGVILVSH 508
+ E I K Y +++V+H
Sbjct: 181 GKIEELIQELKKKYT--IVIVTH 201
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I++EN +L E N NL I + L+GP+G GK+TLLR +
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 57.2 bits (138), Expect = 4e-09
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 37/187 (19%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH--------LFPDDTP 418
LVGPNG GKST L + G +T G ++ + G+ + L TP
Sbjct: 30 LVGPNGAGKSTLLARMAG-MTSGSGSIQFA-----GQPLEAWSATELARHRAYLSQQQTP 83
Query: 419 CEYLMKLFN-----LPYEKSRRQL----GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469
+ M +++ P + L G L LSGG+ RV LA + L
Sbjct: 84 -PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS-TNQLSGGEWQRVRLAAVVL 141
Query: 470 N-----NPD--ILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD-ERLIRETDC 518
NP +L+LDEP N+LD+ ++D L A+ +++ SHD +R
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAH- 200
Query: 519 ELWALEK 525
W L++
Sbjct: 201 RAWLLKR 207
Score = 32.9 bits (75), Expect = 0.37
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ ++ +G LVGPNG GK+TLL +A
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMA 46
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 56.9 bits (138), Expect = 5e-09
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNK 390
+ +V+ Y G KV+L+ V+ + +++GPNG GKST L+++ GE+T +
Sbjct: 4 IENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62
Query: 391 GELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-----RQLGM 439
EL +P +L I K + H L D L+ PY + R R++ +
Sbjct: 63 LELTSTPSKELAKKLSILKQENHINSRLTVRD-----LVGFGRFPYSQGRLTKEDRRI-I 116
Query: 440 FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESID 490
Y H + D LSGGQ+ R +A + + D ++LDEP NNLD+ + +
Sbjct: 117 NEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 491 ALAEAIKNYQGGVILVSHD 509
L +++V HD
Sbjct: 177 ILRRLADELGKTIVVVLHD 195
Score = 39.2 bits (92), Expect = 0.003
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 114
I +EN S S + + +L I G ++GPNG GK+TLL + +R L S
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLKKDS 55
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 58.0 bits (141), Expect = 5e-09
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P++ L ++ + GK ++ ++ ++ + L+GP+G GK+T L L+ G TP+ G
Sbjct: 12 SPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 393 LRKSPRLRIGKFDQHSGEH-----------LFPDDTPCE---YLMKLFNLPYEKSRRQ-- 436
+ L E+ LFP T E + +++ P + +
Sbjct: 71 IM----LDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM 126
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L M L +A P LSGGQ+ RVA+A +N P +L+LDE + LD
Sbjct: 127 EALRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Score = 36.8 bits (86), Expect = 0.024
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ S S G E+ N +L I +G L+GP+G GKTT+LR IA
Sbjct: 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA 61
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 58.6 bits (142), Expect = 5e-09
Identities = 60/210 (28%), Positives = 88/210 (41%), Gaps = 40/210 (19%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ +V+F Y ++L+ +N L + SR VALVG G GKST +LL G +GE+R
Sbjct: 343 IDNVSFAYRDDNLVLQNIN--LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 396 SPR---------LRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NLPYEKSRRQLGM 439
R LR G + D P ++ E+ + L
Sbjct: 401 DGRPLSSLSHSVLR-------QGVAMVQQD-PVVLADTFLANVTLGRDISEEQVWQALET 452
Query: 440 FGLPSYAHTIP--IRDLSGGQ--------KARVALAELTLNNPDILILDEPTNNLDIESI 489
L A ++P + G Q K +ALA + + P ILILDE T N+D +
Sbjct: 453 VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512
Query: 490 DALAEAIKNYQGGVILVSHDERL--IRETD 517
A+ +A+ + LV RL I E D
Sbjct: 513 QAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
Score = 28.9 bits (65), Expect = 9.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 56 NSVDIKVENFSLSAKGVEL-FHNANLQIASGRRYGLVGPNGHGKTTL 101
S I ++N S + + L N NL + S LVG G GK+TL
Sbjct: 337 QSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTL 383
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 58.3 bits (141), Expect = 6e-09
Identities = 62/240 (25%), Positives = 84/240 (35%), Gaps = 49/240 (20%)
Query: 297 ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKV 355
A ++ K + K FP P P L L +V F Y + +
Sbjct: 295 AFNKIAKLELAPYKAD------------FPRPQAFPDWKTLELRNVRFAYQDNAFHVGPI 342
Query: 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLRIGKFDQ- 406
N + V L+G NG GKST LL G P GE+ + F
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402
Query: 407 HSGEHLFPDDTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRD-------LS 455
S HLF L+ EK ++L + AH + D LS
Sbjct: 403 FSDYHLFDQ------LLGPEGKASPQLIEKWLQRLEL------AHKTSLNDGRFSNLKLS 450
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDER 511
GQK R+AL L DIL+LDE + D E L +K + +SHD+
Sbjct: 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH 510
Score = 29.0 bits (65), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 79 NLQIASGRRYGLVGPNGHGKTTLLR 103
NL I G L+G NG GK+TL
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAM 367
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 57.4 bits (139), Expect = 8e-09
Identities = 53/159 (33%), Positives = 68/159 (42%), Gaps = 39/159 (24%)
Query: 356 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRL-----RIGKF 404
+ LD+ S VAL+GP+G GK+T L ++ G G +R RL ++G
Sbjct: 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79
Query: 405 DQHSGEHLFPDDTPCEYLMKLFN--------LPY----------EKSRRQLGMFGLPSYA 446
QH LF M +F+ LP K + L M L A
Sbjct: 80 FQHYA--LFRH-------MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
P + LSGGQK RVALA P IL+LDEP LD
Sbjct: 131 DRYPAQ-LSGGQKQRVALARALAVEPQILLLDEPFGALD 168
Score = 45.5 bits (108), Expect = 4e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ N S ++ ++ +L I SG+ L+GP+G GKTTLLR IA
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA 49
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 55.6 bits (135), Expect = 9e-09
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 28/192 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSP-- 397
G + ++ V+ + V L+GPNG GK+T ++ G + P+ G++ K P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAH 447
RL IG Q + +F T E ++ ++ L ++ + L F +
Sbjct: 71 KRARLGIGYLPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK 128
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVI 504
+ LSGG++ RV +A NP L+LDEP +D ++ I + + +K+ GV+
Sbjct: 129 SKASS-LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187
Query: 505 LVSHDERLIRET 516
+ H+ +RET
Sbjct: 188 ITDHN---VRET 196
Score = 36.8 bits (86), Expect = 0.016
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN S ++ + +L + G GL+GPNG GKTT I
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV 47
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 57.8 bits (140), Expect = 9e-09
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------- 398
P G VL+E ++F + + + + GPNG GKS+ +L GEL P G P
Sbjct: 462 PNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPAKGKLFYV 520
Query: 399 -----LRIGKF-DQHSGEHLFPD-----------DTPCEYLMKLFNLPYEKSRRQLGMFG 441
+ +G DQ ++PD D E ++ L + R G
Sbjct: 521 PQRPYMTLGTLRDQI----IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREG----G 572
Query: 442 LPSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
+ ++D LSGG+K R+A+A L + P ILDE T+ + ++ + +
Sbjct: 573 WSA------VQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626
Query: 498 NYQGGVILVSHDERLIR 514
+ + VSH + L +
Sbjct: 627 EFGITLFSVSHRKSLWK 643
Score = 38.2 bits (89), Expect = 0.013
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 18 KYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL-SAKGVELFH 76
K + SG +G ++S R V+ IK EN L + G L
Sbjct: 419 KRPRVEEIESGREG---------GRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIE 469
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA----TRA--LAIPSSIDLLYCEQ 123
+ + ++ SG + GPNG GK++L R + L P+ L Y Q
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQ 522
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 55.0 bits (132), Expect = 1e-08
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---RKSPRLRIGKFD 405
+ LL++++F L + L G NG GK+T L L+ G L P KGE+ R+S + + +
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73
Query: 406 QH-------SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG-MFGLPSYAHTI--PIRDLS 455
+ SG + P T E L+++ + + + L S H I P LS
Sbjct: 74 KQLCFVGHRSG--INPYLTLRENC--LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLS 129
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERL 512
GQK +VAL L ++ + +LDEP LD S+ + I+ ++ G V+L SH +
Sbjct: 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189
Query: 513 IRETDCELWAL 523
+ + D E + L
Sbjct: 190 LNKADYEEYHL 200
Score = 29.5 bits (66), Expect = 3.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126
L + + +G L G NG GKTTLL+ IA L P ++L+ Q ++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA--GLLNPEKGEILFERQSIK 66
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 55.9 bits (135), Expect = 1e-08
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
L +V+F PG + LL ++ L+G NG GKST L +L
Sbjct: 3 EYTNHSDTTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61
Query: 387 TPNKGE--LRKSPRLRIGKFDQHSGEH---LFPDDTPCEYLMKLFNL------PY----- 430
P++GE L P + + + P P M + L P+
Sbjct: 62 PPSEGEILLDAQP---LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG 118
Query: 431 -------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
EK + + GL AH + + LSGG++ R +A L + L+LDEPT+
Sbjct: 119 RFGAADREKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 484 LDI-ESIDALA--EAIKNYQG-GVILVSHD 509
LDI +D LA + +G VI V HD
Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHD 207
Score = 41.3 bits (97), Expect = 8e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL----RHIATRALAIPSSID 117
+ N S G L H +L +G+ GL+G NG GK+TLL RH PS +
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP------PSEGE 67
Query: 118 LLYCEQEVEASDDSA 132
+L Q +E+ A
Sbjct: 68 ILLDAQPLESWSSKA 82
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 55.9 bits (134), Expect = 1e-08
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 32/205 (15%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P + ++T G+ GK +L++V+ G + +L+GP G GK+TFL L +
Sbjct: 20 PAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN-RMNDKVSGY 77
Query: 394 RKSPRLRIG-----------KFDQHSGEHLF--PDDTPCEYL------MKLFNLPYEKSR 434
R S + +G +F + G LF P+ P + ++ L K
Sbjct: 78 RYSGDVLLGGRSIFNYRDVLEFRRRVG-MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEF 136
Query: 435 RQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
R + L ++D LSGGQ+ + LA NP++L+LDEPT+ LD
Sbjct: 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196
Query: 487 ESIDALAEAIKNYQG--GVILVSHD 509
+ + + E I++ VI+V+H+
Sbjct: 197 TTTEKIEEFIRSLADRLTVIIVTHN 221
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 55.2 bits (133), Expect = 1e-08
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 24/178 (13%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL-------RIGKF 404
L+ VN + ++L+G +G GKST LNL+ G P G + + R+ F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 405 DQHSGEHLFPDDTPCEYLMKLFN-----LPYEKSRR----QLGMFGLPSYAHTIPIRDLS 455
+S L P T E + + L + R + + GL A LS
Sbjct: 61 QNYS---LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-RPGQLS 116
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHD 509
GG K RVA+A P +L+LDEP LD + L E + ++ V++V+HD
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Score = 28.6 bits (64), Expect = 7.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
NL I G L+G +G GK+TLL I+ LA P+S
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLIS--GLAQPTS 39
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 53.9 bits (130), Expect = 2e-08
Identities = 38/159 (23%), Positives = 52/159 (32%), Gaps = 42/159 (26%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425
+ GPNG GKST L+ + R + +G
Sbjct: 25 IITGPNGSGKSTILDAIG------LALGGAQSATRRRSGVK-AGC--------------- 62
Query: 426 FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA----ELTLNNPDILILDEPT 481
+ + L SGG+K ALA +L + ILDE
Sbjct: 63 -IVAAVSAELIFTRLQL------------SGGEKELSALALILALASLKPRPLYILDEID 109
Query: 482 NNLDIESIDALAEAIK-NYQGG--VILVSHDERLIRETD 517
LD ALAEAI + G VI+++H L D
Sbjct: 110 RGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELAD 148
Score = 30.4 bits (69), Expect = 1.2
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
F +L I + GPNG GK+T+L I
Sbjct: 18 FGEGSLTI-------ITGPNGSGKSTILDAIG 42
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 55.2 bits (134), Expect = 2e-08
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 74/225 (32%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL-------------- 379
P + + D+ Y G K L+ +N + AL+GP+G GKST L
Sbjct: 6 PAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 380 ----------NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL 428
N+ ++ ELR+ R+G Q + FP M ++ N+
Sbjct: 65 VEGEVLLDGKNIYDPKVDVV--ELRR----RVGMVFQKP--NPFP--------MSIYDNV 108
Query: 429 PY----------------EKSRRQLGMFG-----LPSYAHTIPIRDLSGGQKARVALAEL 467
Y E S ++ ++ L A LSGGQ+ R+ +A
Sbjct: 109 AYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALG-----LSGGQQQRLCIARA 163
Query: 468 TLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSH 508
P++L++DEPT+ LD S + E I K Y +++V+H
Sbjct: 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYT--IVIVTH 206
Score = 41.4 bits (98), Expect = 7e-04
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+V + +L + NL I + L+GP+G GK+TLLR
Sbjct: 2 TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLR 51
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 56.0 bits (136), Expect = 2e-08
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
VN L + A+ G +G GK++ +N + G P KG + + R+ FD G L
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVL---FDAEKGICLP 72
Query: 414 PDDTPCEYLM---KLF-------NLPY---EKSRRQ----LGMFGLPSYAHTIPIRDLSG 456
P+ Y+ +LF NL Y + Q + + G+ P LSG
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS-LSG 131
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDI 486
G+K RVA+ L P++L++DEP +LD+
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 55.0 bits (132), Expect = 2e-08
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------- 393
+T GY G + E + + A++GPNG GKST L L +TP G +
Sbjct: 13 LTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE---------------KSR 434
K RIG Q++ P D + L+ P++ K+
Sbjct: 72 QHYASKEVARRIGLLAQNATT---PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDAL 492
+ G+ L + + LSGGQ+ R +A + I++LDEPT LDI ID L
Sbjct: 129 QATGITHLADQS----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
Score = 35.0 bits (80), Expect = 0.076
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
E +L + N ++I G ++GPNG GK+TLLR ++
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 56.8 bits (137), Expect = 3e-08
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 33/155 (21%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 410
+L+ ++F L+ +A+ G G GKS+ L ++ GEL P++G+++ HSG
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK------------HSGR 488
Query: 411 HLFPDDTPCEYLMK-------LFNLPYEKSRRQ--LGMFGLPSYAHTIPIRD-------- 453
F T ++M +F L Y++ R + L P +D
Sbjct: 489 ISFSPQTS--WIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 454 --LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P +LD+
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
Score = 33.7 bits (77), Expect = 0.29
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 513
LS G K + LA L+ IL+LDEP+ +LD ++ + + +K ++ + R+
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413
Query: 514 RETDCE-LWALEKKNIRKFNGDFDDYREKLLT 544
+C+ +E +++++ D +KLL
Sbjct: 1414 ALLECQQFLVIEGSSVKQY-----DSIQKLLN 1440
Score = 32.2 bits (73), Expect = 0.93
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+ +T Y G+ +L+ ++F ++ RV L+G G GKST L+ L
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Score = 29.1 bits (65), Expect = 7.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 67 LSAK----GVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
L+AK G + + + + G+R GL+G G GK+TLL
Sbjct: 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL 1262
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 55.6 bits (134), Expect = 3e-08
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P+L + ++T + G+ ++ V+ + AL+G +G GKST L +L G P G++
Sbjct: 18 PLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 394 --------RKSPRLR-IGKFDQHSGEHLFPDDT---PCEYLMKLFNLPY-EKSRR---QL 437
P R I Q LFP T + +K LP E + R L
Sbjct: 77 MLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML 134
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--------IESI 489
G+ + +A P LSGGQ+ RVALA P +L+LDEP LD +E +
Sbjct: 135 GLVHMQEFAKRKP-HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVV 193
Query: 490 DALAEAIKNYQGGV--ILVSHDE 510
D L GV ++V+HD+
Sbjct: 194 DILERV------GVTCVMVTHDQ 210
Score = 35.2 bits (81), Expect = 0.076
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ N + S G + +L I G + L+G +G GK+TLLR +A
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA 66
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 56.0 bits (136), Expect = 3e-08
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVG 369
E+ E+ E V F + L L++V+F YP +L+ ++ + +VAL+G
Sbjct: 316 EITEQKPE--VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373
Query: 370 PNGIGKSTFLNLLKGELTPNKGELR 394
G GKST L LL P +GE+
Sbjct: 374 RTGCGKSTLLQLLTRAWDPQQGEIL 398
Score = 49.1 bits (118), Expect = 4e-06
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 8/66 (12%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 507
R LSGG++ R+ +A L++ +L+LDEPT LD E+ ++ LAE +N V++++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKT--VLMIT 531
Query: 508 HDERLI 513
H RL
Sbjct: 532 H--RLT 535
Score = 35.6 bits (83), Expect = 0.079
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 51 STVDDNSVDIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108
ST + V + + N F+ + + +LQI +G + L+G G GK+TLL+ + TR
Sbjct: 330 STAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL-TR 388
Query: 109 A 109
A
Sbjct: 389 A 389
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 52.8 bits (126), Expect = 3e-08
Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 33/149 (22%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGP G GK+T L EL P G +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGG------------------------------VI 34
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
+ + + L SG + R+ALA PD+LILDE T+ L
Sbjct: 35 YIDGE---DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLL 91
Query: 485 DIESIDALAEAIKNYQGGVILVSHDERLI 513
D E L + ++ + +I
Sbjct: 92 DAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Score = 35.0 bits (80), Expect = 0.034
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
G +VGP G GKTTL R +A P ++Y
Sbjct: 1 PGEVILIVGPPGSGKTTLARALA--RELGPPGGGVIYI 36
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 55.2 bits (133), Expect = 3e-08
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 38/201 (18%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELR---------------------------KSPRL 399
++G +G GKST + G + G ++ K R
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 400 RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-RQLGMFGL------PSYAHTIPIR 452
R+ Q LF D + + L +KS ++L F L SY P
Sbjct: 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF- 175
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHD 509
LSGGQK RVA+A + P+ILI DEPT LD + + + I K V +++H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 510 ERLIRETDCELWALEKKNIRK 530
+ E E+ ++K I K
Sbjct: 236 MEHVLEVADEVIVMDKGKILK 256
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 53.9 bits (130), Expect = 3e-08
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 347 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------- 393
GG L L+ V+ ++ VAL GP+G GKST L L P+ G +
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76
Query: 394 -RKSPR----LR---IGKFDQHSGEHLFPDDTPCEYLMKLF-------NLPYEKSRRQLG 438
+ SPR +R IG Q + P + E + + ++R L
Sbjct: 77 AQASPREVLEVRRKTIGYVSQFL--RVIPRVSALEVVAEPLLERGVPREAARARARELLA 134
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+P +P SGG++ RV +A + + IL+LDEPT +LD + + E I
Sbjct: 135 RLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 499 Y-QGGVILVS--HDE 510
G L+ HDE
Sbjct: 195 AKARGAALIGIFHDE 209
Score = 35.1 bits (81), Expect = 0.067
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 60 IKVENFSLS-----AKGVEL--FHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++VE+ S + GV L N +L + +G L GP+G GK+TLL+ +
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL 54
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 53.4 bits (129), Expect = 4e-08
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 42/147 (28%)
Query: 365 VALVGPNGIGKSTFLNLL---------KGELTPNKGELRKSPRLRIG---KFDQHSGEHL 412
AL+G +G GK+T L++L GE+ N L K+ + G + D HS
Sbjct: 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNL- 94
Query: 413 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTLNN 471
T E L L R LS Q+ R+ + EL
Sbjct: 95 ----TVREALRFSALL-----------------------RGLSVEQRKRLTIGVELA-AK 126
Query: 472 PDILILDEPTNNLDIESIDALAEAIKN 498
P IL LDEPT+ LD ++ + +K
Sbjct: 127 PSILFLDEPTSGLDSQAAYNIVRFLKK 153
Score = 32.2 bits (74), Expect = 0.45
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108
+L +N + + G L+G +G GKTTLL +A R
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 54.2 bits (130), Expect = 4e-08
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN- 389
+L DV Y G K ++ VN + + AL+GP+G GK+TFL + +LTP
Sbjct: 2 TLLLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60
Query: 390 --------KGELRKSPRL-------RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
G+ PR+ R+G Q FP + + ++ L + R
Sbjct: 61 RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP--FPTMSVFDNVVAGLKLAGIRDR 118
Query: 435 RQL------GMFGLPSYAH-----TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
L + G + P LSGGQ+ R+ +A P+IL++DEPT+
Sbjct: 119 DHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178
Query: 484 LDIESIDALAEAIKNYQG--GVILVSHD 509
LD S + + + + + +I+V+H+
Sbjct: 179 LDPASTARIEDLMTDLKKVTTIIIVTHN 206
Score = 36.1 bits (83), Expect = 0.030
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 67 LSAKGVELFH-------NANLQIASGRRYGLVGPNGHGKTTLLRHI 105
LSA+ V +++ N NL + G L+GP+G GKTT LR I
Sbjct: 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI 50
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 55.4 bits (134), Expect = 4e-08
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
PP+L ++ Y G +VL + ++F L AL+G NG GKST + ++ G + P+ G
Sbjct: 8 APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 392 ELR------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR----- 434
L K+ +L I Q LFP+ + E + LF LP ++
Sbjct: 67 TLEIGGNPCARLTPAKAHQLGIYLVPQEP--LLFPNLSVKENI--LFGLPKRQASMQKMK 122
Query: 435 ---RQLGM-FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
LG L S A ++ + D + V + + + ILILDEPT +L +
Sbjct: 123 QLLAALGCQLDLDSSAGSLEVAD-----RQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 491 ALAEAIKNYQG---GVILVSHDERLIRE 515
L I+ G++ +SH IR+
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQ 205
Score = 43.5 bits (103), Expect = 2e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 431 EKSRRQLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 488
E+ RR L + + H R LSGG + +V +A+ +P +LI+DEPT +D+ +
Sbjct: 384 ERYRRALNI----KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
Query: 489 --IDALAEAIKNYQGGVILVSHD 509
I L +I V+ +S D
Sbjct: 440 NDIYQLIRSIAAQNVAVLFISSD 462
Score = 32.3 bits (74), Expect = 0.71
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + S GVE+ + + +G + L+G NG GK+TL++ IA
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIA 58
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 55.0 bits (133), Expect = 6e-08
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 48/173 (27%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRLRIGKFDQHSGEHLF-------- 413
A VG NG GKS L GEL GE + RL + Q +
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQL-QKLVSDEWQRNNTDML 91
Query: 414 ---PDDTP----------------CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
DDT CE L + F + RR + L
Sbjct: 92 SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRR---------------FKYL 136
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGGVILV 506
S G+ + L + ++ PD+LILDEP + LD+ S LAE + + +Q G+ LV
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Score = 36.1 bits (84), Expect = 0.046
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L + G+ P LS GQ+ + + +P +LILDEP LD
Sbjct: 385 LDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
Score = 35.8 bits (83), Expect = 0.066
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 329 PYLPP--PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
LP P + L++ Y + +L +++ ++ +VGPNG GKST L+L+ G+
Sbjct: 252 HALPANEPRIVLNNGVVSY-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309
Score = 33.4 bits (77), Expect = 0.36
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLL 102
HN + Q+ G + +VGPNG GK+TLL
Sbjct: 277 HNLSWQVNPGEHWQIVGPNGAGKSTLL 303
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 55.1 bits (133), Expect = 7e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 513
LSGGQK R+A+A + P +LILDE T+ LD E L E+ V+L++H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV 677
Query: 514 RETD 517
D
Sbjct: 678 ERAD 681
Score = 53.6 bits (129), Expect = 2e-07
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 314 EKPREYI-VKFRFPNP-PYLPPPVLGL---HDVTFGYPG--GKVLLEKVNFGLDMESRVA 366
EK EY+ K P P + GL DV+F YP +L+ + F L VA
Sbjct: 452 EKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVA 511
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL 393
LVGP+G GKST LL+ P G++
Sbjct: 512 LVGPSGSGKSTVAALLQNLYQPTGGQV 538
Score = 30.8 bits (70), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTT---LLRH 104
V + + G LVGP+G GK+T LL++
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 52.9 bits (127), Expect = 8e-08
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSHDER 511
LSGGQK RVA+A + NP +LILDE T+ LD ES + +A+ + V++++H
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210
Query: 512 LIRETD 517
+ D
Sbjct: 211 TVERAD 216
Score = 43.6 bits (103), Expect = 1e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 340 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+VTF YP ++L+ V+F L ALVGP+G GKST + LL+ P G++
Sbjct: 16 NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 53.5 bits (129), Expect = 8e-08
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
RQ+GM + + P R LSGGQK RVA+A + PDI+ILDE T+ LD + E
Sbjct: 126 RQVGM---EDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE 181
Query: 495 AIK--NYQGG--VILVSHD 509
++ Q G V+ ++HD
Sbjct: 182 TVRQLKEQKGITVLSITHD 200
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 334 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ + ++F YP L+ V+F + VA+VG NG GKST LL G L P G
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 393 LR 394
+
Sbjct: 64 IT 65
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 53.2 bits (128), Expect = 9e-08
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 37/217 (17%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P+L + ++ Y G V+F L + +VG +G GK+T L + G LTP+ G
Sbjct: 3 DKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 392 --------------------ELRKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFN 427
E R+ R G Q+ + L + E LM +
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 428 LPYEKSRRQLGMFGL------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
Y R L +P R SGG + R+ +A + P ++ +DEPT
Sbjct: 122 RHYGNI-RAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179
Query: 482 NNLDIES----IDALAEAIKNYQGGVILVSHDERLIR 514
LD+ +D L ++ V++V+HD + R
Sbjct: 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Score = 35.5 bits (82), Expect = 0.059
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108
+ V S + + + + G G+VG +G GKTTLL+ I+ R
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 53.2 bits (128), Expect = 9e-08
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 46/200 (23%)
Query: 365 VALVGPNGIGKSTFL---NLL----KGELTPNKGELRKSP-----------------RLR 400
++++G +G GKSTFL N L G + N E+R R R
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94
Query: 401 IGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIR 452
+G QH +L+ T E +++ + + E++ + L G+ A P
Sbjct: 95 LGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH 152
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQGGVIL 505
LSGGQ+ RVA+A P++++ DEPT+ LD E + LAE + +++
Sbjct: 153 -LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT----MVV 207
Query: 506 VSHDERLIRETDCELWALEK 525
V+H+ R+ + L +
Sbjct: 208 VTHEMGFARDVSSHVIFLHQ 227
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 53.3 bits (128), Expect = 9e-08
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 33/155 (21%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-------- 402
+L+ +N ++ +A+ G G GK++ L L+ GEL P++G+++ S R+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 403 -----------KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
+D++ + + C+ + P EK LG G+
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVV---KACQLEEDITKFP-EKDNTVLGEGGI--------- 158
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 159 -TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Score = 28.7 bits (64), Expect = 8.5
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 36 ENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNG 95
E ++ K S+ D+N + N L V N NL+I G + G G
Sbjct: 19 ELLEKAKQENNDRKHSSDDNN---LFFSNLCLVGAPV--LKNINLKIEKGEMLAITGSTG 73
Query: 96 HGKTTLLRHI 105
GKT+LL I
Sbjct: 74 SGKTSLLMLI 83
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 54.7 bits (132), Expect = 1e-07
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A + NP ILI DE T+ LD ES + ++ G VI+++H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS 653
Query: 512 LIRETDCELWALEKKNI 528
+R D + LEK I
Sbjct: 654 TVRACD-RIIVLEKGQI 669
Score = 36.3 bits (84), Expect = 0.051
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 41 SQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
++ A ++ + F + E+ N NL I G G+VGP+G GK+T
Sbjct: 439 TEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKST 498
Query: 101 LLR 103
L +
Sbjct: 499 LTK 501
Score = 31.3 bits (71), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
++ F Y P +L +N + + +VGP+G GKST LL+ TP G++
Sbjct: 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 52.8 bits (127), Expect = 1e-07
Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 56/219 (25%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGELTPNKGELR------------ 394
L++ +N L +ALVG +G GKS L LL LT GE+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 395 --------KSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
++PR +G H+ E L KL L
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMG---NHAIE-------TLRSLGKLSKQARALILEALEAV 110
Query: 441 GLP-------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESI 489
GLP Y LSGG RV +A L P LI DEPT +LD+ +
Sbjct: 111 GLPDPEEVLKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165
Query: 490 DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 528
L E + + G++L++HD ++ E+ ++ I
Sbjct: 166 KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 54.6 bits (131), Expect = 1e-07
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 35/182 (19%)
Query: 326 PNPPYLP-PPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
NPP P P + + + F + K L +N + + S VA+VG G GK++ ++ +
Sbjct: 604 QNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM 663
Query: 383 KGELTPN-------KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR- 434
GEL+ +G + P++ F+ E++ LF +E R
Sbjct: 664 LGELSHAETSSVVIRGSVAYVPQVS-WIFNATVRENI------------LFGSDFESERY 710
Query: 435 -RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNPDILILDEPTNN 483
R + + L +P RDL SGGQK RV++A +N DI I D+P +
Sbjct: 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
Query: 484 LD 485
LD
Sbjct: 771 LD 772
Score = 38.0 bits (88), Expect = 0.017
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 42/185 (22%)
Query: 340 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKG 391
DV Y PG +L ++F + +V +VG G GKS+ LN L KG + +
Sbjct: 1239 DVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC 1298
Query: 392 ELRK---------------SP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429
++ K SP R I F +H+ L+ +
Sbjct: 1299 DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW----------EALERA 1348
Query: 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
+ K FGL + + S GQ+ ++LA L IL+LDE T ++D+
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR-T 1406
Query: 490 DALAE 494
D+L +
Sbjct: 1407 DSLIQ 1411
Score = 29.2 bits (65), Expect = 7.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL-------LRHIATRA 109
S D K +LS + NL+I G +VG G GKT+L L H T +
Sbjct: 623 SWDSKTSKPTLS--------DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 110 LAIPSSI 116
+ I S+
Sbjct: 675 VVIRGSV 681
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 53.0 bits (127), Expect = 1e-07
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKST-------FLNLLKGELTPNK 390
L D +F PGG + ALVG NG GKST F+ L G+++
Sbjct: 23 LRDASFTVPGGSI--------------AALVGVNGSGKSTLFKALMGFVRLASGKISILG 68
Query: 391 GELRKSPRLRIGKFDQHSGE--HLFP---DDTPC--EY-LMKLFNLPYEKSRR----QLG 438
R++ + + + S E FP +D Y M ++ R+ L
Sbjct: 69 QPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALA 128
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEA 495
+ + H I +LSGGQK RV LA +++LDEP +D+++ I +L
Sbjct: 129 RVDMVEFRHR-QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 496 IKNYQGGVILVS 507
+++ +G +LVS
Sbjct: 188 LRD-EGKTMLVS 198
Score = 30.2 bits (68), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+A+ + G LVG NG GK+TL + +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKAL 53
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 48.7 bits (117), Expect = 1e-07
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 232 IHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHK 291
+ L+ KL YKGN++ + + ++ ++ K YE Q+K+I++++ R + K
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRF----RAKASK 56
Query: 292 ALKEQAR-KRVQKDDDDEPKELLEKPREYIVKFRF 325
A + Q+R K ++K E +EKP E K RF
Sbjct: 57 AKQAQSRIKALEK------MERIEKPVEKKPKIRF 85
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 52.5 bits (126), Expect = 1e-07
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 43/219 (19%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P+L + ++ Y GG V+F L + +VG +G GKST L L G L P+ G
Sbjct: 1 KPLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 393 ---------------LRKSPRLRIGKFD-----QHSGEHLFPDDTP----CEYLMKLFNL 428
L ++ R R+ + + Q+ + L + E LM +
Sbjct: 60 ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR 119
Query: 429 PYEKSRRQLGMFGLPSYAHTIPI---------RDLSGGQKARVALAELTLNNPDILILDE 479
Y R + + I R SGG + R+ +A + P ++ +DE
Sbjct: 120 HYGNIRATAQ-----DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 480 PTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIR 514
PT LD+ +D L +++ VI+V+HD + R
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
Score = 34.4 bits (79), Expect = 0.11
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111
++V S S G + + + + G G+VG +G GK+TLL +A R
Sbjct: 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 52.3 bits (126), Expect = 2e-07
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 44/205 (21%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG----ELTPN----KGE--LRKS 396
K +L+ VN + A++GPNG GKST + G E+T KG+ L
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 397 P--RLRIGKF--DQHSGEHLFPDDTPCEYL---------------MKLFNLPYEKSRRQL 437
P R R G F Q+ E P + E+L + L + + + +L
Sbjct: 71 PDERARAGLFLAFQYPEE--IPGVSNLEFLRSALNARRSARGEEPLDLLDF-LKLLKAKL 127
Query: 438 GMFGLP-SYAHTIPIRDL----SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
+ G+ + + R + SGG+K R + ++ L P + ILDE + LDI+++ +
Sbjct: 128 ALLGMDEEFLN----RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 493 AEAIKNYQG---GVILVSHDERLIR 514
AE I + ++++H +RL+
Sbjct: 184 AEGINRLREPDRSFLIITHYQRLLN 208
Score = 39.5 bits (93), Expect = 0.002
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+K+++ +S + E+ NL + G + ++GPNG GK+TL + IA
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIA 47
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 52.3 bits (125), Expect = 2e-07
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 37/190 (19%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG----------ELRKSPRLR- 400
L V+ + VAL+GP+G GKST L L G +T +K +++ RL
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 401 -IGKFDQHSGEHLFPDDTPCEYLMKLFNL-------------------PYEKSR--RQLG 438
I K ++G ++F L L N+ +K R + L
Sbjct: 80 DIRKSRANTG-YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 497
G+ +AH + LSGGQ+ RVA+A + +++ DEP +LD ES + + ++
Sbjct: 139 RVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 498 -NYQGGVILV 506
N G+ +V
Sbjct: 198 INQNDGITVV 207
Score = 42.7 bits (100), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+VE + + + H +L I G L+GP+G GK+TLLRH++
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLS 51
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 52.4 bits (126), Expect = 2e-07
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 46/205 (22%)
Query: 340 DVTFGYPGG-----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+V++ Y K+ L+ VN + + ++G NG GKST + L P++G
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG--- 65
Query: 395 KSPRLRIGKFDQHSGEHLF------------PDDTPCEYLMK---------LFNLPYEKS 433
++ + D E+L+ PD+ +++ L P E
Sbjct: 66 ---KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 434 RR------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD-- 485
R ++GM+ +A + LSGGQK RVA+A + P+ +I DEPT LD
Sbjct: 123 ERVDESLKKVGMYEYRRHAPHL----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 486 --IESIDALAEAIKNYQGGVILVSH 508
E ++ + E K Y +IL++H
Sbjct: 179 GRREVVNTIKELNKKYGITIILITH 203
Score = 32.8 bits (75), Expect = 0.38
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ NL++ G ++G NG GK+T+ +H+ AL IPS
Sbjct: 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHM--NALLIPSE 64
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 51.8 bits (125), Expect = 2e-07
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 54/206 (26%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------ELRKSP-- 397
+ ++ V+ ++ V L+GPNG GK+T ++ G + P+ G ++ K P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 398 ---RLRIGKFDQHS---------------GEHLFPDDTP------CEYLMKLFNLPYEKS 433
RL IG Q + E D + L++ F++
Sbjct: 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI--THL 132
Query: 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESID 490
R LSGG++ RV +A NP ++LDEP +D + I
Sbjct: 133 RDSKAYS-------------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 491 ALAEAIKNYQGGVILVSHDERLIRET 516
+ + +K+ GV++ H+ +RET
Sbjct: 180 RIIKHLKDRGIGVLITDHN---VRET 202
Score = 39.1 bits (92), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ EN + S K ++ ++ +L++ SG GL+GPNG GKTT
Sbjct: 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTT 45
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 51.3 bits (123), Expect = 3e-07
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A ++NP ILI DE T+ LD ES A+ + + G VI+++H
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 199 TVKNAD-RIIVMEKGRI 214
Score = 37.1 bits (86), Expect = 0.014
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 341 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
V F Y P G V+L+ ++ + V +VG +G GKST L++ P G +
Sbjct: 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Score = 35.5 bits (82), Expect = 0.049
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
F G + N +L+I G G+VG +G GK+TL + I
Sbjct: 8 FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI 48
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 51.4 bits (123), Expect = 3e-07
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF---LNL------- 381
V ++ + Y G L+ +N + A++GP+G GKSTF LNL
Sbjct: 9 KQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN 67
Query: 382 --LKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY------EK 432
L GE+ N + K ++ + + ++ G +F P + +F N+ Y K
Sbjct: 68 VKLTGEMNYNGSNILKG-KVDLVELRKNIG-MVFQKGNP--FPQSIFDNVAYGPRIHGTK 123
Query: 433 SRRQLGMF---GLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPT 481
++++L L A ++D LSGGQ+ R+ +A NPD+L++DEPT
Sbjct: 124 NKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183
Query: 482 NNLDIESIDALAEAI 496
+ LD S + E I
Sbjct: 184 SALDPVSTRKIEELI 198
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 50.1 bits (121), Expect = 3e-07
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 53/196 (27%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTP 388
PVL + ++ K + V+F + R V + G G G++ L G P
Sbjct: 2 EPVLEVRGLS-----VKGAVRDVSFEV----RAGEIVGIAGLVGNGQTELAEALFGLRPP 52
Query: 389 NKGEL--------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
GE+ R+SPR I G P+D R++ G+
Sbjct: 53 ASGEITLDGKPVTRRSPRDAIRA-----GIAYVPED-----------------RKREGLV 90
Query: 441 -GLPSYAHTIPIRDLSGG--QKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L + LSGG QK V LA L + P +LILDEPT +D+ + + I
Sbjct: 91 LDLSVAENIALSSLLSGGNQQK--VVLARWLARD-PRVLILDEPTRGVDVGAKAEIYRLI 147
Query: 497 KNY--QG-GVILVSHD 509
+ G V+L+S +
Sbjct: 148 RELADAGKAVLLISSE 163
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 52.2 bits (125), Expect = 4e-07
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 345 YPGGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKG-----------ELTP 388
+ G K + L V+ + ++G +G GKST + NLL+ +LT
Sbjct: 12 HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71
Query: 389 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFG 441
R +IG QH +L T + ++L N P ++ +R+ L + G
Sbjct: 72 LSNSELTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG 129
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NY 499
L + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++ E +K N
Sbjct: 130 LGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 500 QGG--VILVSHDERLIR 514
+ G ++L++H+ +++
Sbjct: 189 RLGLTILLITHEMDVVK 205
Score = 36.4 bits (84), Expect = 0.032
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
IK+ N F K ++ +N +L + +G+ YG++G +G GK+TL+R
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR 49
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 49.2 bits (118), Expect = 6e-07
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 30/171 (17%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
L+ ++ + + V + G +G GKST +N L S + R+ F
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG----------LYASGKARLISFLPK---- 56
Query: 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTLN 470
++ +L L LG L T LSGG+ RV LA EL
Sbjct: 57 --FSRNKLIFIDQLQFL----IDVGLGYLTLGQKLST-----LSGGELQRVKLASELFSE 105
Query: 471 NPDIL-ILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERLIRETD 517
P L ILDEP+ L + I+ L E IK + VIL+ H+ ++ D
Sbjct: 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSAD 156
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 50.8 bits (121), Expect = 7e-07
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGE--------------LRKSPRLR--IGKFDQHSGE 410
++G G GKST + L G + G+ +++ RLR IG Q
Sbjct: 42 VIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101
Query: 411 HLFPDDTPCEYLMKLFNL------PYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVA 463
LF + + NL Y+K L + LP Y P +LSGGQK RVA
Sbjct: 102 QLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF-ELSGGQKRRVA 160
Query: 464 LAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 509
LA + + + L+LDEPT LD + I+ K Y+ +I+V+H+
Sbjct: 161 LAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 51.3 bits (123), Expect = 7e-07
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPR 398
G +++ +N + + V L+GP+G GK+T L L+ G P +G++ +S +
Sbjct: 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 399 LR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 450
R I Q LFP + E Y +K+ +P E+ +++ L + L +
Sbjct: 77 QRDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY- 133
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILV 506
+ +SGGQ+ RVALA + P +L+ DEP +NLD ++ E I+ Q + V
Sbjct: 134 VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193
Query: 507 SHDE 510
+HD+
Sbjct: 194 THDQ 197
Score = 34.7 bits (80), Expect = 0.11
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N NL I G L+GP+G GKTT+LR +A L P+
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVA--GLEKPTE 60
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 52.0 bits (125), Expect = 7e-07
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 37/183 (20%)
Query: 326 PNPPYLPP-PVLGLHDVTFGY--PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
PNPP P P + + + F + + L +N + + S VA+VG G GK++ ++ +
Sbjct: 604 PNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM 663
Query: 383 KGELTPN-------KGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
GEL P +G + P++ I F+ +++ LF P++ R
Sbjct: 664 LGELPPRSDASVVIRGTVAYVPQVSWI--FNATVRDNI------------LFGSPFDPER 709
Query: 435 --RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNPDILILDEPTN 482
R + + L +P DL SGGQK RV++A +N D+ I D+P +
Sbjct: 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
Query: 483 NLD 485
LD
Sbjct: 770 ALD 772
Score = 30.9 bits (70), Expect = 2.2
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 48/197 (24%)
Query: 332 PPP------VLGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384
PPP + DV Y P +L ++F + +V +VG G GKS+ LN L
Sbjct: 1228 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287
Query: 385 ELTPNKGE---------------LRK-------SP-------RLRIGKFDQHSGEHLFPD 415
+ +G LRK +P R + F++H+ L+
Sbjct: 1288 IVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW-- 1345
Query: 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475
E L + +L R LG+ S A + S GQ+ ++LA L IL
Sbjct: 1346 ----ESLERA-HLKDVIRRNSLGLDAEVSEAG----ENFSVGQRQLLSLARALLRRSKIL 1396
Query: 476 ILDEPTNNLDIESIDAL 492
+LDE T +D+ + DAL
Sbjct: 1397 VLDEATAAVDVRT-DAL 1412
Score = 30.1 bits (68), Expect = 3.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 57 SVDIKVENFSLSAKGVE-LFHNANLQIASGRRYGLVGPNGHGKTTLL 102
++ IK FS +K N NL + G +VG G GKT+L+
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI 660
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 51.7 bits (124), Expect = 9e-07
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 448 TIPIRDLSGGQKA------RVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY 499
PI+ LSGG++ R+AL++L ++L LDEP LD E ++ LAE ++
Sbjct: 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL 869
Query: 500 QGG---VILVSHDERLI 513
+I++SH E L
Sbjct: 870 LSDGRQIIIISHVEELK 886
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 51.0 bits (123), Expect = 9e-07
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 52/181 (28%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KG- 384
+ L++V+ P G++ FG+ +G +G GKST + NLL G
Sbjct: 16 RTIHALNNVSLHIPAGEI------FGV--------IGASGAGKSTLIRCINLLERPTSGR 61
Query: 385 ------ELTP-NKGELRKSPRLRIGKFDQH---------SGEHLFPDDTPCEYLMKLFNL 428
+LT ++ ELRK+ R +IG QH P ++L
Sbjct: 62 VLVDGQDLTALSEKELRKA-RRQIGMIFQHFNLLSSRTVFDNVALP--------LELAGT 112
Query: 429 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
P + + + L + GL A P LSGGQK RVA+A +NP +L+ DE T+ L
Sbjct: 113 PKAEIKARVTELLELVGLSDKADRYP-AQLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 485 D 485
D
Sbjct: 172 D 172
Score = 39.8 bits (94), Expect = 0.003
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+++N F + + +N +L I +G +G++G +G GK+TL+R I
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCI 51
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.2 bits (120), Expect = 9e-07
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 49/189 (25%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN-- 389
P+L + D++ Y K L V+ AL+GP+G GKST L + +L P
Sbjct: 4 PILQVSDLSV-YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62
Query: 390 -------KGELRKSPR-----LR--IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY---- 430
G SPR LR IG Q P + M ++ N+ Y
Sbjct: 63 ITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ----------PNPFPMSIYENVVYGLRL 112
Query: 431 -------------EKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476
EKS + ++ + H + LSGGQ+ RV +A + +P I++
Sbjct: 113 KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-GLSGGQQQRVCIARVLATSPKIIL 171
Query: 477 LDEPTNNLD 485
LDEPT+ LD
Sbjct: 172 LDEPTSALD 180
Score = 30.5 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++V + S+ + ++ +L L+GP+G GK+TLLR I
Sbjct: 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSI 51
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 51.3 bits (123), Expect = 1e-06
Identities = 68/259 (26%), Positives = 104/259 (40%), Gaps = 60/259 (23%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
L P VL L DV+ P GK+ + ++G G GKST L L + ++
Sbjct: 670 LEPKVL-LRDVSVSVPRGKLTV--------------VLGATGSGKSTLLQSLLSQFEISE 714
Query: 391 GE----------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
G + + R I FD+ L D L E
Sbjct: 715 GRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL-ADAVRVSQL--------EADL 765
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDA 491
QLG GL + + +LSGGQKARV+LA N D+ +LD+P + LD E +
Sbjct: 766 AQLGG-GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV-- 821
Query: 492 LAEAIKNYQGGV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEA 549
+ E G +L +H ++ D + AL + +F+G D+ TSL
Sbjct: 822 VEECFLGALAGKTRVLATHQVHVVPRADY-VVALGDGRV-EFSGSSADFMR---TSLYAT 876
Query: 550 MVYNPSVAAEQDDDEDYED 568
+ AAE +++D ++
Sbjct: 877 L------AAELKENKDSKE 889
Score = 29.7 bits (67), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 81 QIASGRRYGLVGPNGHGKTTLL 102
+IA + G+VG G GK+TLL
Sbjct: 1332 RIAPREKVGIVGRTGSGKSTLL 1353
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 49.6 bits (118), Expect = 1e-06
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELRKSPRL 399
Y GG L+ +N + + AL+GP+G GKSTFL +L P +GE+ P
Sbjct: 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP-- 82
Query: 400 RIGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP----------- 443
+ L P+ P E M++ + P+ KS + +GL
Sbjct: 83 -------DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILE 135
Query: 444 --------SYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLD-- 485
+ A ++D LSGGQ+ R+ +A +P+IL+ DEPT+ LD
Sbjct: 136 ERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195
Query: 486 -IESIDALAEAIKNYQGGVILVSHD 509
SI+ L +KN + +++V+H+
Sbjct: 196 ATASIEELISDLKN-KVTILIVTHN 219
Score = 29.6 bits (66), Expect = 4.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
V + G + N N+ + + L+GP+G GK+T LR
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLR 60
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 49.3 bits (118), Expect = 2e-06
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 347 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------- 394
GG L L V+ ++ V L GP+G GKST L L P++G++
Sbjct: 20 GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79
Query: 395 --KSPR----LR---IGKFDQHSGEHLFPD----DTPCEYLMKL---FNLPYEKSRRQLG 438
PR +R IG Q + P D E L+ + K+ L
Sbjct: 80 VTAEPREVLEVRRTTIGYVSQFL--RVIPRVSALDVVAEPLLARGVPREVARAKAADLLT 137
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
LP ++ SGG++ RV +A + + IL+LDEPT +LD + + E I
Sbjct: 138 RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
Query: 497 KNYQGGVIL-VSHDERLIRETDCE 519
+G ++ + HDE +RE +
Sbjct: 198 AKARGAALVGIFHDEE-VREAVAD 220
Score = 32.4 bits (74), Expect = 0.45
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 71 GVEL--FHNANLQIASGRRYGLVGPNGHGKTTLLR 103
GV L N +L + +G L GP+G GK+TLLR
Sbjct: 21 GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLR 55
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 329 PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 388
P L P V + V P G+ ++++N A +G NG GK+T L++L G L P
Sbjct: 923 PGLVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP 982
Query: 389 NKGELR----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRR 435
G + + R +G QH+ LF T E+++ +L +E+++
Sbjct: 983 TSGTVLVGGKDIETNLDAVRQSLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQL 1040
Query: 436 QLGMF----GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
++ GL + +DLSGG + ++++A + + +++LDEPT+ +D S +
Sbjct: 1041 EMEAMLEDTGL-HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRS 1099
Query: 492 LAEAIKNYQGG--VILVSH 508
+ + + Y+ G +I+ +H
Sbjct: 1100 IWDLLLKYRSGRTIIMSTH 1118
Score = 45.8 bits (108), Expect = 7e-05
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 45/240 (18%)
Query: 295 EQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG-GKVLLE 353
E A++ + +DDD +E R+ I+ +L L+++T Y G ++
Sbjct: 1908 EPAKEPIFDEDDDVAEE-----RQRIISGGNKTD------ILRLNELTKVYSGTSSPAVD 1956
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSG- 409
++ G+ L+G NG GK+T +L G+ T G+ KS I Q+ G
Sbjct: 1957 RLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGY 2016
Query: 410 --------------EHLFPDDTPCEYLMKLFNLPYEKSRR----QLGMFGLPSYAHTIPI 451
EHL+ +L +P E+ + + GL YA +
Sbjct: 2017 CPQFDAIDDLLTGREHLY-------LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA- 2068
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508
SGG K +++ A + P +++LDEPT +D ++ L I + V+L SH
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 48.9 bits (117), Expect = 2e-06
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFL---------NLLKGE-LTPNKGELRKSPRLR 400
+L+ +N ++ A++GPNG GKST +L+G+ L + L P R
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 401 IGKFDQHSGEHL---FPDDTP----CEYLM-------KLFNLP-------YEKSRRQLGM 439
H G L +P + P ++L K LP E +L +
Sbjct: 82 -----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKL 136
Query: 440 FGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
G+ PS+ SGG+K R + ++ L + ++ ILDE + LDI+++ +AE I
Sbjct: 137 VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196
Query: 497 -KNYQGGVILVSHDERLI 513
+ +IL++H +RL+
Sbjct: 197 LMTSENSIILITHYQRLL 214
Score = 40.4 bits (95), Expect = 0.001
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++++N S E+ NL I G + ++GPNG GK+TL + IA
Sbjct: 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA 54
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 49.0 bits (117), Expect = 3e-06
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-------------RKSPRLRI 401
++F L +A++G NG GKST +L G + P GEL +S R+R+
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 402 GKFDQHSGEHLFPD-------DTPCEYLMKLFNLPYEK----SRRQLGMFGLPSYAHTIP 450
Q L P D P L EK + RQ+G+ LP +A P
Sbjct: 92 --IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDHASYYP 147
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
L+ GQK R+ LA + P ++I DE +LD+
Sbjct: 148 -HMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 49.4 bits (118), Expect = 3e-06
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 432 KSRRQ-----LGMFGLPSYAHTIPI--RDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
K+RRQ L G+P A + + LSGG RV +A P +LI DEPT L
Sbjct: 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184
Query: 485 DI----ESIDALAEAIKNYQGGVILVSHDERLIRE 515
D+ + I+ L E + ++L++HD L+ E
Sbjct: 185 DVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 48.7 bits (116), Expect = 3e-06
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 27/191 (14%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------------LRK 395
G+ ++E V+ ++ V L+GPNG GK+T ++ G + + G L
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE--KSRRQLGMFGLPSYAHTIPIRD 453
R IG Q + +F + + LM + + + +R+ L H +RD
Sbjct: 75 RARRGIGYLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 454 -----LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVIL 505
LSGG++ RV +A NP ++LDEP +D + I + E +++ GV++
Sbjct: 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 506 VSHDERLIRET 516
H+ +RET
Sbjct: 193 TDHN---VRET 200
Score = 39.9 bits (93), Expect = 0.002
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ +N + + KG + + +L + SG GL+GPNG GKTT
Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT 44
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 49.5 bits (119), Expect = 3e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQG- 501
I LSGG + + LA+ L NP ILILDEPT +D+ + I+ L + QG
Sbjct: 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-----QGV 456
Query: 502 GVILVS 507
+I++S
Sbjct: 457 AIIVIS 462
Score = 41.5 bits (98), Expect = 0.001
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 27/201 (13%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL---------K 383
+L + ++T + G K L + V+ + V+L G NG GKST + +L +
Sbjct: 3 EYLLEMKNITKTFGGVKAL-DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE 61
Query: 384 GELTPNKGEL-----RKSPRLRIGKFDQH--------SGEHLFPDDTPCEYLMKLFNLPY 430
GE+ EL R + R I Q E++F + + ++ Y
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
++++ L L T P+ +L GQ+ V +A+ +LILDEPT +L
Sbjct: 122 LRAQKLLAQLKLDINPAT-PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETA 180
Query: 491 ALAEAIKNYQ-GGV--ILVSH 508
L + I++ + G+ I +SH
Sbjct: 181 VLLDIIRDLKAHGIACIYISH 201
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
GV+ N +L++ +G L G NG GK+TL++
Sbjct: 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMK 49
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 48.5 bits (115), Expect = 4e-06
Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 42/193 (21%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
L +N + S AL+GP+G GKSTFL L +G ++I + G++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-------IKIEGNVIYEGKN 75
Query: 412 LFPDD---------------TPCEYLMKLF-NLPY------EKSRRQLGMF---GLPSYA 446
++ ++ TP +LM ++ N+ Y K +++L L A
Sbjct: 76 IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA 135
Query: 447 HTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
++D LSGGQ+ R+ +A P+++++DEPT+ LD S + E I N
Sbjct: 136 LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195
Query: 499 YQGG--VILVSHD 509
+ +I+V+H+
Sbjct: 196 LKESYTIIIVTHN 208
Score = 34.2 bits (78), Expect = 0.14
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
N I+ EN +L + +N N++I L+GP+G GK+T LR
Sbjct: 4 NEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLR 51
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 49.6 bits (118), Expect = 4e-06
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 509
LSGGQK R+++A + NP ILILDE T++LD +S + + I N +G I+++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 510 ERLIR 514
IR
Sbjct: 640 LSTIR 644
Score = 44.2 bits (104), Expect = 2e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVS 507
+ LSGGQK R+A+A L P IL+LDE T++LD S + + I + + +I ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 508 HDERLIRETD 517
H I+ +D
Sbjct: 1417 HRIASIKRSD 1426
Score = 33.1 bits (75), Expect = 0.51
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
K VE++ + N + G+ Y VG +G GK+T+L+ I
Sbjct: 396 KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431
Score = 29.2 bits (65), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+ + + F D + A+VG G GKST ++LL
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214
Score = 28.8 bits (64), Expect = 9.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+NF L A VG +G GKST L L++ P +G++
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 48.1 bits (114), Expect = 4e-06
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL----- 399
Y K +L+ + + S ++GP+G GKST L +L + +++ ++
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 400 ---RIG--KFDQHSGEHLFPDDTPCEYLMKLFNLPY-----------------EKSRRQL 437
+I K + G +F P +L N+ Y E+ R++
Sbjct: 79 DIFQIDAIKLRKEVG-MVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV 137
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAE 494
G++ P LSGGQ+ R+ +A P +L++DEPT+ +DI ++I+ L
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 495 AIKNYQGGVILVSHD 509
+KN + +++VSH+
Sbjct: 198 ELKN-EIAIVIVSHN 211
Score = 28.5 bits (63), Expect = 8.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ + ++I + +G++GP+G GK+TLL+
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLK 54
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 48.6 bits (116), Expect = 4e-06
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 47/218 (21%)
Query: 333 PPVLGLHD--VTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKS----TFLNLL--- 382
+L + D VTF P G V + +NF L + +VG +G GKS + LL
Sbjct: 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69
Query: 383 ---KGELTPNKGELRKSP-----RLR---IGKFDQHSGEHLFPDDTPCEYLMKLFNL--- 428
G T N E+ P +LR I Q L P E LM++ L
Sbjct: 70 GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 429 -----PYEKSRRQLGMFGLPS-------YAHTIPIRDLSGGQKARVALAELTLNNPDILI 476
+E+S R L +P Y H + SGG + RV +A L P +LI
Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPH-----EFSGGMRQRVMIAMALLCRPKLLI 184
Query: 477 LDEPTNNLDIESIDA-----LAEAIKNYQGGVILVSHD 509
DEPT LD+ ++ A L E + + +I+++HD
Sbjct: 185 ADEPTTALDV-TVQAQIMTLLNELKREFNTAIIMITHD 221
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 49.2 bits (117), Expect = 5e-06
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 48/206 (23%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL------ 386
PP L + +TF P G + VA+VG G GKS+ L+ L E+
Sbjct: 651 PPTL--NGITFSIPEGAL--------------VAVVGQVGCGKSSLLSALLAEMDKVEGH 694
Query: 387 TPNKGELRKSPRLRIGKFDQHSGEHLF--PDDTP--------CEYLMKLFNLPYEKSRRQ 436
KG + P+ + D LF + C L L LP R +
Sbjct: 695 VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILP-SGDRTE 753
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
+G G+ +LSGGQK RV+LA +N DI + D+P + +D + E +
Sbjct: 754 IGEKGV----------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 497 KNYQGGV-----ILVSHDERLIRETD 517
+G + ILV+H + + D
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVD 829
Score = 38.4 bits (89), Expect = 0.013
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 328 PPYLPPPV--LGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384
PP PP + + Y ++L +N + +V +VG G GKS+ L
Sbjct: 1275 PPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334
Query: 385 ELTPNKGELRKSPR--LRIGKFDQHSGEHLFPDDTPCEYLMKL-FNL-PY-----EKSRR 435
+GE+ +IG D + P D P + L NL P+ E+
Sbjct: 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD-PVLFSGSLRMNLDPFSQYSDEEVWW 1393
Query: 436 QLGMFGLPSYAHTIPIR----------DLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L + L ++ +P + +LS GQ+ V LA L IL+LDE T +D
Sbjct: 1394 ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
Query: 486 IESIDALAEAIK 497
+E+ + + I+
Sbjct: 1454 LETDNLIQSTIR 1465
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 48.9 bits (117), Expect = 6e-06
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN-YQGGVILVSHDE 510
SGGQ+ R+A+A + P ++ILDEPT++LD I AL ++++ +Q + +SHD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 511 RLIR 514
++R
Sbjct: 487 HVVR 490
Score = 43.2 bits (102), Expect = 3e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA-----LAEAIKNYQGGVILVSH 508
LSGG++ RV +A L P++LI DEPT LD+ S+ A L E + G++ ++H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITH 215
Query: 509 DERLIR 514
+ ++R
Sbjct: 216 NLSIVR 221
Score = 29.3 bits (66), Expect = 5.9
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGP 93
++E V+ + + TVD N V V+N S + + G GLVG
Sbjct: 277 DVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLR-------------PGETLGLVGE 320
Query: 94 NGHGKTT----LLRHIATR 108
+G GK+T LLR I ++
Sbjct: 321 SGSGKSTTGLALLRLINSQ 339
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 48.6 bits (116), Expect = 8e-06
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 342 TFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----KS 396
F YP LE VNF L + + GP G GKST L+L++ ++G++R
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 397 PRLRI----GKFDQHSGE-HLF------------PDDTP--CEYLMKLFN-------LP- 429
+L++ + S LF PD T E++ +L + LP
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 430 -YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
Y+ + G+ LSGGQK R+++A L N +ILILD+ + +D
Sbjct: 440 GYDTEVGERGVM-------------LSGGQKQRISIARALLLNAEILILDDALSAVD 483
Score = 36.6 bits (85), Expect = 0.034
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL----RH 104
V+I+ F+ N N + G+ G+ GP G GK+TLL RH
Sbjct: 315 DVNIR--QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 48.3 bits (115), Expect = 8e-06
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 19/185 (10%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
+ +L +N + VA+VG +G GK+T L ++ G +GE + P +
Sbjct: 392 RVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-GRGEEKYRPDSGKVEV 450
Query: 405 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG----------MFGLPS-YAHTIPIRD 453
+++ L P + E+ E R + G GL + +
Sbjct: 451 PKNTVSALIPGEYEPEFGEVTI---LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA----EAIKNYQGGVILVSHD 509
LS GQK R LA+L P++L++DE +LD + +A E + +I+V+H
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 510 ERLIR 514
+
Sbjct: 568 PEVGN 572
Score = 33.7 bits (77), Expect = 0.28
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 53 VDDNSVDIKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL 110
+ + DI +E+F + + +E + N NL+I G +VG +G GKTTLLR I
Sbjct: 376 LPNEFQDI-LESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434
Query: 111 AIP 113
Sbjct: 435 GRG 437
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 47.3 bits (112), Expect = 9e-06
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 51/238 (21%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP---NKGELRK---- 395
Y G K + ++ ++ + AL+GP+G GKSTFL + +L P ++GE+
Sbjct: 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89
Query: 396 ---------SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----FG 441
+ R IG Q FP Y L Y RR+ +
Sbjct: 90 ILDSNINVVNLRREIGMVFQKPNP--FPKSI---YNNITHALKYAGERRKSVLDEIVEES 144
Query: 442 LPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---ID 490
L A ++D LSGGQ+ R+ +A P +L+LDEP + LD S I+
Sbjct: 145 LTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE 204
Query: 491 ALAEAIKNYQGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDY--REKLLTS 545
L +K + +I+V+H+ ++ +R +D + L NGD +Y E++ TS
Sbjct: 205 ELITELKE-EYSIIIVTHNMQQALRVSDRTAFFL--------NGDLVEYDQTEQIFTS 253
Score = 32.2 bits (73), Expect = 0.56
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
++V++ S+ ++ ++ I L+GP+G GK+T LR I IPS+
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 46.7 bits (111), Expect = 1e-05
Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 44/190 (23%)
Query: 365 VALVGPNGIGKSTFLNLLKGELT----PN----------KGE-LRKSPRLRIGKFDQ--- 406
AL+G NG GKST L L G+LT P GE L R+ +
Sbjct: 30 TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLP 89
Query: 407 HSGEHLFPDDTPCEYLMKLFNLPY-----EKSRRQLGMFGLP---SYAHTIPIRD---LS 455
+ + F ++ L P+ + R + + A + RD LS
Sbjct: 90 QAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLS 147
Query: 456 GGQKARV----ALAEL-----TLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGG 502
GG+ ARV LA+L P L+LDEPT LD+ L + + +++ G
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLG 207
Query: 503 VILVSHDERL 512
V+ + HD L
Sbjct: 208 VLAIVHDPNL 217
Score = 35.2 bits (81), Expect = 0.061
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ ++ ++ + + + +L+I GR L+G NG GK+TLL+ +A
Sbjct: 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALA 48
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 46.5 bits (110), Expect = 1e-05
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 41/197 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G K L+ V+ + S AL+GP+G GKSTF+ L +L K+ R+ GK
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-----RMNDLIKNCRIE-GKVSI 76
Query: 407 HSGEHLFPDDT---------------PCEYLMKLF-NLPY----------------EKSR 434
GE ++ D P + M ++ N+ Y E +
Sbjct: 77 E-GEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENAL 135
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
R ++ S P LSGGQ+ R+ +A P I++ DEPT+ LD S + +
Sbjct: 136 RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195
Query: 495 AIKNYQGG--VILVSHD 509
I N + +++V+H+
Sbjct: 196 LIMNLKKDYTIVIVTHN 212
Score = 33.4 bits (76), Expect = 0.21
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
IKVEN +L + N ++QI L+GP+G GK+T +R
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIR 56
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.5 bits (110), Expect = 1e-05
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 40/197 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL------------KGELTPNKG--- 391
G K L +N + AL+GP+G GKSTFL L +GE+ +
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 392 -------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 444
ELRK R+G Q Y ++ + +K ++ + L
Sbjct: 75 DKDVDVVELRK----RVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK 130
Query: 445 YAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DAL 492
A ++D LSGGQ+ R+ +A PD++++DEPT+ LD S D +
Sbjct: 131 AALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 493 AEAIKNYQGGVILVSHD 509
E K Y +++V+H+
Sbjct: 191 VELKKEYT--IVIVTHN 205
Score = 30.3 bits (68), Expect = 2.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ ++ +N +L + ++ NL I + L+GP+G GK+T LR
Sbjct: 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLR 48
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 46.7 bits (111), Expect = 1e-05
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 63/193 (32%)
Query: 362 ESRV-ALVGPNGIGKSTFLNLL------------KGELT---PNKGELRKSP---RLRIG 402
E++V A++GP+G GKSTFL + +GELT N + P R RIG
Sbjct: 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIG 123
Query: 403 KFDQHSGEHLFPD-------------------DTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
Q FP D E ++ L +++ + QL GL
Sbjct: 124 MVFQKPNP--FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAAL-WDEVKDQLDSSGL- 179
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD------IES-IDALAEAI 496
DLSGGQ+ R+ +A +P+++++DEP + LD IE I+ LAE
Sbjct: 180 ---------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 497 KNYQGGVILVSHD 509
V++V+H+
Sbjct: 231 T-----VVIVTHN 238
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.6 bits (110), Expect = 1e-05
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELT-PNK 390
P + + D++F Y K + E ++ + A++GP+G GKSTF+ L EL P K
Sbjct: 6 PAIKVKDLSFYYNTSKAI-EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 391 --------GELRKSPRLRIGKFDQHSGEHLFPDDTP--------CEYLMKLFNLPYEKSR 434
G+ PR+ I + + G +F P Y +++ +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 435 RQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
++ L A ++D LSGGQ+ R+ +A P +L++DEP + LD
Sbjct: 124 DEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP 183
Query: 487 ESIDALAEAIKNYQG--GVILVSHD 509
+ + E I + + + +V+H+
Sbjct: 184 IATMKVEELIHSLRSELTIAIVTHN 208
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 47.1 bits (112), Expect = 2e-05
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------R 394
G L+ VN + AL+G NG GKST + +L G P KG + +
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 395 KSPRLRIGKFDQHSG--------EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA 446
+ +L IG Q E+L+ + + + + + + R + M L
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 447 HTIP---IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID---ALAEAIKNYQ 500
+ +LS K + +A+ + + ++I+DEPT++L + +D + ++
Sbjct: 136 KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195
Query: 501 GGVILVSHDERLIRE 515
++ +SH IR
Sbjct: 196 TAIVYISHKLAEIRR 210
Score = 34.8 bits (80), Expect = 0.13
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
I +LSGG + +V +++ P+++I DEPT +D+
Sbjct: 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDV 442
Score = 33.2 bits (76), Expect = 0.39
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I + S V + NL + G + L+G NG GK+TL++
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMK 49
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.2 bits (109), Expect = 2e-05
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 35/201 (17%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELR 394
DV F Y G L+ ++ ++ +S VA +GP+G GKSTFL L +L P +GE+R
Sbjct: 8 DVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 395 KSPR------LRIGKFDQHSGEHLFPDDTP--------CEYLMKLFNLPYEKSRRQLGMF 440
R +++ + ++ G +F P Y +++ + RQ
Sbjct: 67 IDGRNIYDKGVQVDELRKNVG-MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE 125
Query: 441 GLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
L A ++D LSGGQ+ R+ +A +P +L++DEP + LD S +
Sbjct: 126 TLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 493 AEAI----KNYQGGVILVSHD 509
E I K+Y +++V+H+
Sbjct: 186 EELIHELKKDYT--IVIVTHN 204
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.1 bits (109), Expect = 2e-05
Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 49/212 (23%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGELRKSPRLRI 401
Y G K ++ V + A++GP+G GK+T L N + + P R+
Sbjct: 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI----------PGFRV 61
Query: 402 GKFDQHSGEHLFPDDT---------------PCEYLMKLF-NLPY--------------- 430
G+ ++ P + M ++ N+ +
Sbjct: 62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDR 121
Query: 431 --EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--- 485
E+S ++ ++ P LSGGQ+ R+ +A P++++LDEPT+ LD
Sbjct: 122 IVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
Query: 486 IESIDALAEAIKNYQGGVILVSHDERLIRETD 517
+ I+ L E + VI+ + + IR D
Sbjct: 182 TQRIEKLLEELSENYTIVIVTHNIGQAIRIAD 213
Score = 32.6 bits (74), Expect = 0.39
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I++ENFS + N ++I + ++GP+G GKTTLLR I
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI 49
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 46.1 bits (110), Expect = 3e-05
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 49/175 (28%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
L+ V+F L+ +A+VG +G GKST LL TP GEL + G+
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY------------YQGQD 78
Query: 412 LFPDDTPCEYLMK-----LFNLPY--------------------------EKSRRQLGMF 440
L D + L++ +F PY E+ + L M
Sbjct: 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMM 138
Query: 441 ---GL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
GL P + P SGGQ+ R+A+A + +PD+++ DEP + LD+ S+ A
Sbjct: 139 AKVGLRPEHYDRYP-HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV-SVQA 191
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 45.7 bits (109), Expect = 3e-05
Identities = 57/214 (26%), Positives = 83/214 (38%), Gaps = 58/214 (27%)
Query: 334 PVLGLHDVTFG-YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
P G DV+F YPG +VL +VG +G GK+T LN L L P+ G
Sbjct: 18 PRKGCRDVSFDLYPG-EVL--------------GIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 392 -------------------ELRKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFNL 428
E R+ R G QH + L + E LM +
Sbjct: 63 VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR 122
Query: 429 PYEKSRRQ----LGMFGLPSYAHTIPIRDL----SGGQKARVALAELTLNNPDILILDEP 480
Y R L + I DL SGG + R+ +A + +P ++ +DEP
Sbjct: 123 HYGDIRATAGDWLERVEID----AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178
Query: 481 TNNLDIESI-----DALAEAIKNYQGGVILVSHD 509
T LD+ S+ D L ++ V++V+HD
Sbjct: 179 TGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHD 211
Score = 33.4 bits (77), Expect = 0.23
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108
V + + + + + G G+VG +G GKTTLL ++ R
Sbjct: 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 45.6 bits (108), Expect = 3e-05
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 52/205 (25%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
Y G +++ V+ + AL+GP+G GKST L L N+ E R +R+
Sbjct: 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE-EARVEGEVRL--- 68
Query: 405 DQHSGEHLF-PDDTPCEYLMKL---FNLP--------YEKSRRQLGMFGLPSYAHTIPIR 452
G +++ PD P E ++ F P Y+ + + GL + R
Sbjct: 69 ---FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER 125
Query: 453 -----------------------DLSGGQKARVALAELTLNNPDILILDEPTNNLD---- 485
+LSGGQ+ R+ +A P IL++DEPT N+D
Sbjct: 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGT 185
Query: 486 --IESIDALAEAIKNYQGGVILVSH 508
IE + L E K Y ++LV+H
Sbjct: 186 AKIEEL--LFELKKEYT--IVLVTH 206
Score = 29.4 bits (66), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+ N + + +L+I + L+GP+G GK+TLLR
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLR 48
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.4 bits (107), Expect = 3e-05
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN--- 389
++ DV Y G L ++ + + AL+GP+G GKSTFL L + N
Sbjct: 4 IISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI 62
Query: 390 KGELR------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM----------------KLFN 427
GE++ ++ + + + G +F TP + + +L +
Sbjct: 63 TGEIKFEGQNIYGSKMDLVELRKEVG-MVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
E+S +Q ++ + SGGQ+ R+ +A P +++LDEPT+ LD
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 488 SIDALAEAIKN--YQGGVILVSHD 509
S + E + +Q I+V+H+
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHN 205
Score = 31.2 bits (70), Expect = 1.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I ++ LS E H +L L+GP+G GK+T LR
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLR 48
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 45.2 bits (107), Expect = 3e-05
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 62/210 (29%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL------------LKGE 385
L+D+T P +V AL+GP+G GKST L + G+
Sbjct: 22 LYDITISIPKNRV--------------TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGD 67
Query: 386 LTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------EKS 433
+ N + S R +IG Q FP N+ Y EK+
Sbjct: 68 ILYNGENIMDSGADVVALRRKIGMVFQRPNP--FPKSI-------YENVAYGPRIHGEKN 118
Query: 434 RRQLGMFGLPSYAHTI---PIRD--------LSGGQKARVALAELTLNNPDILILDEPTN 482
++ L S ++D LSGGQ+ R+ +A NP+++++DEP +
Sbjct: 119 KKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178
Query: 483 NLD---IESIDALAEAIKNYQGGVILVSHD 509
LD I+ L E +K VI+V+H+
Sbjct: 179 ALDPIATAKIEDLIEDLKKEY-TVIIVTHN 207
Score = 33.3 bits (76), Expect = 0.30
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ +N +L ++ + I R L+GP+G GK+TLLR
Sbjct: 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLR 50
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 45.9 bits (109), Expect = 3e-05
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--IES 488
++ QL + GL +A P +LSGG + RV LA IL++DEP + LD I +
Sbjct: 143 KRVDEQLELVGLAQWADRKP-GELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 489 --IDALAEAIKNYQGGVILVSHD 509
D L E + ++ VSHD
Sbjct: 202 QLQDELLELQSKLKKTIVFVSHD 224
Score = 30.9 bits (70), Expect = 1.9
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
HNA+L I G L+G +G GK+TLLR +
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAV 70
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 46.0 bits (109), Expect = 4e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+PI LSGG + + LA++ L NP +LILDEPT +D+
Sbjct: 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
Score = 40.6 bits (95), Expect = 0.002
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 358 GLDMESR----VALVGPNGIGKSTFLNLL---------KGELTPNKGELRKS---PRLRI 401
G+D+E R V L G NG GKST + +L GE+ + L+ S R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78
Query: 402 GKFDQHSGEHLFPDDTPCEYL-----------MKLFNLPYEKSRRQLGMFGLPSYAHTIP 450
G H L P+ + E + +N Y +++ L L + T P
Sbjct: 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP 138
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GV--ILVS 507
+ D GGQ+ V +A+ +LILDEP+++L + + L + I++ + GV + +S
Sbjct: 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198
Query: 508 H 508
H
Sbjct: 199 H 199
Score = 32.1 bits (73), Expect = 0.84
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS-- 128
GV+ +L++ G GL G NG GK+TL++ ++ ++ + ++AS
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 129 -DDSAVNIVLSADKNRVKLLKECSKLE 154
D IV+ + L+ E S E
Sbjct: 73 RDTERAGIVII--HQELTLVPELSVAE 97
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 45.8 bits (109), Expect = 4e-05
Identities = 59/223 (26%), Positives = 83/223 (37%), Gaps = 84/223 (37%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
L +VT Y G V++ K + LD+ V VGP+G GKST L
Sbjct: 6 LRNVTKAY--GDVVISK-DINLDIHEGEFVVFVGPSGCGKSTLL---------------- 46
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM---------------- 439
R+ G D SG+ LF + K N + R +GM
Sbjct: 47 --RMIAGLEDITSGD-LFIGE-------KRMN-DVPPAERGVGMVFQSYALYPHLSVAEN 95
Query: 440 --FGLP--------------------SYAHTIPIR--DLSGGQKARVALAELTLNNPDIL 475
FGL AH + + LSGGQ+ RVA+ + P +
Sbjct: 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
Query: 476 ILDEPTNNLD--------IESIDALAEAIKNYQGGVILVSHDE 510
+LDEP +NLD IE ++ K +I V+HD+
Sbjct: 156 LLDEPLSNLDAALRVQMRIE----ISRLHKRLGRTMIYVTHDQ 194
Score = 38.1 bits (89), Expect = 0.011
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
+ + N + + V + + NL I G VGP+G GK+TLLR IA L +S DL
Sbjct: 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA--GLEDITSGDL 60
Query: 119 LYCEQ---EVEASD 129
E+ +V ++
Sbjct: 61 FIGEKRMNDVPPAE 74
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 45.0 bits (106), Expect = 4e-05
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---------KGEL 393
+ G L+ ++ + AL+GP+G GKST+L L +L P +G+
Sbjct: 14 FYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73
Query: 394 RKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--------FNLPYEKSRRQLG 438
+P R ++G Q F Y ++L + E S +Q
Sbjct: 74 IYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 439 MF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAE 494
++ + + H + LSGGQ+ RV +A + PD+++LDEPT+ LD S I+ +
Sbjct: 134 IWDEVKDHLHESAL-SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL 192
Query: 495 AIKNYQGGVILVSHD 509
+++ Q +ILV+H
Sbjct: 193 ELRD-QYTIILVTHS 206
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 44.6 bits (106), Expect = 6e-05
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
LSGGQK RVA+A + NP+I+I DE T+ LD
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Score = 43.8 bits (104), Expect = 1e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ + +V+F YP L+ V+F ++ VA++G NG GKST +L G L P GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 393 L 393
+
Sbjct: 66 I 66
Score = 32.3 bits (74), Expect = 0.53
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 54 DDNSVDIKVENFSLSAKGVELF--HNANLQIASGRRYGLVGPNGHGKTTL 101
+ SV IKVEN S S E N + +I G ++G NG GK+T+
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTI 51
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 44.5 bits (105), Expect = 7e-05
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 34/189 (17%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELRKSPRLRIGKFDQ 406
++KVN + + A++GP+G GKSTFL + +L P+ G L GKF
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF-- 112
Query: 407 HSGEHLFPD------DTPCEYLMKLF-NLPY-----------------EKSRRQLGMFGL 442
+ E L P + +F N+ Y EKS R+ ++
Sbjct: 113 -TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE 171
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 502
S LSGGQ+ R+ +A P+IL+LDEPT+ LD ++ + + I+ +G
Sbjct: 172 VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS 231
Query: 503 --VILVSHD 509
+++V+H+
Sbjct: 232 YTIMIVTHN 240
Score = 31.0 bits (70), Expect = 1.3
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 48 SKRSTVDDNSV-DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+R V + +NFS+ E N I S ++GP+G GK+T LR I
Sbjct: 27 PERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN 86
Query: 107 TRALAIPS 114
IPS
Sbjct: 87 RMNDLIPS 94
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 44.0 bits (104), Expect = 9e-05
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 34/192 (17%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI-----GKFDQHSG-EHLFPDDTP 418
+ LVG NG GKST N++ G L+P G++ ++ + + G Q +G E++
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENI------ 106
Query: 419 CEYLMKLFNLPYEKSRR---------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469
E+ M ++ + +LG F P++ S G +A++ +
Sbjct: 107 -EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ------PVKKYSSGMRAKLGFSINIT 159
Query: 470 NNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 525
NPDIL++DE + D + +D + E K + VSH+ +R+ ++ +E
Sbjct: 160 VNPDILVIDEALSVGDQTFAQKCLDKIYE-FKEQNKTIFFVSHNLGQVRQFCTKIAWIEG 218
Query: 526 KNIRKFNGDFDD 537
++ + G+ DD
Sbjct: 219 GKLKDY-GELDD 229
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 44.0 bits (103), Expect = 9e-05
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 448 TIPIRDLSGGQKARVALAEL---TLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 501
+ I+ +S G K +AL L +L++DEP N L + + L E +K
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243
Query: 502 GVILVSHDERLIR 514
+I +H L+
Sbjct: 244 QLIFTTHSPLLLD 256
Score = 34.0 bits (77), Expect = 0.17
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425
++GPNG GKS L L L L L +G + P E+ ++
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIEE 62
Query: 426 FNL 428
F +
Sbjct: 63 FLI 65
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 45.2 bits (107), Expect = 1e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 44/166 (26%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPN--KGELRKS--PR-----LRIGKF----DQHSGEHL 412
AL+G +G GK+T +++L G T +G++R S P+ RI + D HS
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS---- 965
Query: 413 FPDDTPCEYLM--KLFNLPYEKSRRQLGMF------------------GLPSYAHTIPIR 452
P T E L+ LP E S+ + MF GLP +
Sbjct: 966 -PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG------VT 1018
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
LS Q+ R+ +A + NP I+ +DEPT+ LD + + ++N
Sbjct: 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064
Score = 32.9 bits (75), Expect = 0.57
Identities = 54/219 (24%), Positives = 80/219 (36%), Gaps = 63/219 (28%)
Query: 329 PYLPPPVLGLHDVTFGYPG------GKVLLEKVNFGLDMESRVALV-GPNGIGKSTFLNL 381
P LP + + G G K+ + K G+ SR+ L+ GP GK+T L
Sbjct: 151 PTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLA 210
Query: 382 LKGELTPN---KGEL------------RKSPRLRIGKFDQHSGEHLFPD----DTPCEYL 422
L G+L P+ GE+ RK+ I + D H G + C+ +
Sbjct: 211 LAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHVGVMTVKETLDFSARCQGV 269
Query: 423 MKLFNLPYEKSRRQ--------------------------------LGMFGLPSYAHTIP 450
++L E +RR+ L + GL TI
Sbjct: 270 GTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIV 329
Query: 451 ----IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
IR +SGGQK RV E+ + L +DE + LD
Sbjct: 330 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.7 bits (103), Expect = 1e-04
Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 33/200 (16%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELR------K 395
G K +L +N + A +GP+G GKSTFL + PN KGEL
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 396 SP-------RLRIGKFDQHSGEHLFPDDT--PCEYLMKLFNLP---------YEKSRRQL 437
S R ++G Q FP Y KL L EKS +
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNP--FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV 133
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
G++ +LSGGQ+ R+ +A P +L++DEP + LD + + + I+
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 498 NYQGG--VILVSHDERLIRE 515
+ +I+V+H + ++
Sbjct: 194 ELKKNFTIIVVTHSMKQAKK 213
Score = 32.9 bits (75), Expect = 0.38
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ + V+N +L ++ + NL I +GP+G GK+T LR
Sbjct: 2 SEIHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLR 49
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 43.9 bits (103), Expect = 1e-04
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-----------SPRLR 400
L V+F + V+++G NG GKST L+ G +G+++ + R +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 401 IGKFDQHSGEHLF----PDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIR 452
IG Q+ DD + M+ +P E+ ++ L + + P R
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVA--FGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 508
LSGGQK RVA+A + P+I+ILDE T+ LD E + + E + YQ V+ ++H
Sbjct: 141 -LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199
Query: 509 D 509
D
Sbjct: 200 D 200
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 42.9 bits (101), Expect = 1e-04
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 369 GPNGIGKSTFLNLLKGELTPNKGEL--RKSPRLRIGK-FDQHSGEHL-FPDDTPCEYLMK 424
G NG GKS+ L ++ G + P+ G + + I K + + G +L + +K
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILI 476
++ Y + L + H + D LS G + VA+A L D+ +
Sbjct: 93 FWSEIYNSAET------LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWL 146
Query: 477 LDEPTNNLDIESIDALAE--AIKNYQGGVILV-SHDERLIR 514
LDE NL E+ D L +K GG++L+ SH E I+
Sbjct: 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.4 bits (102), Expect = 1e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILV 506
P LSGGQ+ R+ +A P++L+ DEPT NLD E+ I++L +K ++LV
Sbjct: 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLV 201
Query: 507 SH 508
+H
Sbjct: 202 TH 203
Score = 34.5 bits (79), Expect = 0.100
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I++ + +S VE+ NL+I L+GP+G GK+TLLR
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLR 47
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 43.9 bits (103), Expect = 1e-04
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 38/193 (19%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-----ELTPNKGEL------RKSP 397
K +L +N + A +GP+G GKSTFL L E T ++GE+ +S
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY---------EKSRRQLGMFGLPSYAH 447
++ + G +F TP E M +F N+ Y K ++ L S A
Sbjct: 155 KISSLELRTRIG-MVFQKPTPFE--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL 211
Query: 448 TIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI--- 496
++D LSGGQ+ R+ +A P++L++DEPT+ LD + + E I
Sbjct: 212 WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271
Query: 497 -KNYQGGVILVSH 508
K Y +I+V+H
Sbjct: 272 KKKYS--IIIVTH 282
Score = 39.3 bits (91), Expect = 0.004
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 12 QLKKQSKYQQELSALS-GGQGTDELENFTVSQSSKASSKRSTVDD-NSVDIKVENFSLSA 69
+ +K +KYQ+ + L Q EL+ F + ++ + + N +I+ NF
Sbjct: 33 EFQKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN 92
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ + H+ NL I + +GP+G GK+T LR++
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 44.2 bits (105), Expect = 1e-04
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 26/109 (23%)
Query: 406 QHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+H+ E D ++LFN+ P S Q I LSGG + +VA
Sbjct: 367 KHADEQQAVSD-----FIRLFNIKTP---SMEQ-------------AIGLLSGGNQQKVA 405
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSHD 509
+A + P +LILDEPT +D+ + + + I + G +ILVS +
Sbjct: 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Score = 36.5 bits (85), Expect = 0.037
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 38/205 (18%)
Query: 334 PVLGLHDVTFGYPGGKVLLE---KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L L + +PG K L V G M ALVG NG GKST + +L G T +
Sbjct: 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVM----ALVGENGAGKSTMMKVLTGIYTRDA 58
Query: 391 GELR--------KSPRLR----IGKFDQHSGEHLFPDDTPCE--YLMKLFNLP------- 429
G + P+ IG H +L P T E +L + F
Sbjct: 59 GSILYLGKEVTFNGPKSSQEAGIGII--HQELNLIPQLTIAENIFLGREFVNRFGRIDWK 116
Query: 430 --YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL-DI 486
Y ++ + L L + + +LS G++ V +A++ ++I+DEPT+ L D
Sbjct: 117 KMYAEADKLLARLNLRFSSDK-LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
Query: 487 ESIDALAEAIKNY--QG-GVILVSH 508
E+ ++L I+ QG G++ +SH
Sbjct: 176 ET-ESLFRVIRELKSQGRGIVYISH 199
Score = 33.8 bits (78), Expect = 0.24
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
GV+ A L + GR LVG NG GK+T+++
Sbjct: 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMK 48
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 43.9 bits (104), Expect = 2e-04
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 48/179 (26%)
Query: 358 GLDMESRVALV-GPNGIGKSTFLNLLKGE----------------LTPNKGELRKSPR-- 398
GL + +V G G G ST L + +TP E++K R
Sbjct: 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE--EIKKHYRGD 139
Query: 399 -LRIGKFDQHSGEHLFPDDT---------PCEYLMKLFNLPYEKSRRQLGM--FGLPSYA 446
+ + D H HL +T P + Y K + M +GL +
Sbjct: 140 VVYNAETDVHFP-HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL---S 195
Query: 447 HTIP-------IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
HT +R +SGG++ RV++AE +L I D T LD +E I AL
Sbjct: 196 HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKT 254
Score = 38.2 bits (89), Expect = 0.012
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 32/160 (20%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTP----------NKGELRKSPRLRIGKFDQHSGEHLFPD 415
AL+G +G GK+T LN+L +T N L S + IG + Q HL P
Sbjct: 793 ALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG-YVQQQDLHL-PT 850
Query: 416 DTPCE------YLMKLFNLP-YEKSR------RQLGMFGLPSYAHTI---PIRDLSGGQK 459
T E YL + ++ EK + L M SYA + P L+ Q+
Sbjct: 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM---ESYADAVVGVPGEGLNVEQR 907
Query: 460 ARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
R+ + EL +L LDEPT+ LD ++ ++ + ++
Sbjct: 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 43.6 bits (103), Expect = 2e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+SGGQK R+ALA L + +LILDE T+NLD
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Score = 43.6 bits (103), Expect = 3e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
DV++ Y G +L ++ + M S+ +VG +G GKST LL G GE+ +
Sbjct: 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
Query: 400 RIGKFDQH 407
+ D+H
Sbjct: 538 -LKDIDRH 544
Score = 34.7 bits (80), Expect = 0.14
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 36 ENFTVSQSSKASSKRSTVDDNSVDIKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPN 94
E + V KR+ +++ + DI + + S S G + + +L I + +VG +
Sbjct: 450 EVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMS 509
Query: 95 GHGKTTLLR 103
G GK+TL +
Sbjct: 510 GSGKSTLAK 518
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 42.3 bits (99), Expect = 3e-04
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 365 VALVGPNGIGKSTFL---NLLK----GELTPNKGELR-----------------KSPRLR 400
++++G +G GKSTFL N L+ G + N + + R R
Sbjct: 34 ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93
Query: 401 IGKFDQHSG--EHLFPDDTPCEYLMKLFNLPYEKSR----RQLGMFGLPSYAHTIPIRDL 454
+ QH H+ + E +++ L +++R + L G+ A L
Sbjct: 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
SGGQ+ RV++A P++L+ DEPT+ LD E
Sbjct: 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Score = 29.2 bits (65), Expect = 5.7
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 132
E+ +LQ +G ++G +G GK+T LR I L PS ++ Q + D
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 133 VNIVLSADKNRVKLLK 148
+ + ADKN+++LL+
Sbjct: 77 GQLKV-ADKNQLRLLR 91
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 43.3 bits (102), Expect = 3e-04
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKS-TFLNLLK------GELTPNKGELRKSPR--LRIG 402
+ ++F L +A+VG +G GKS T L L++ G + +K LR+ R + +
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 403 KFDQHSGEHLFPDDT------PCEYLMKLF--------------NLPYEK----SRRQLG 438
+ H+ D P L +F E+ ++R L
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151
Query: 439 MFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
+P A TI R LSGG + RV +A P +LI DEPT LD+ + +
Sbjct: 152 QVRIPE-AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 496 IKNYQG----GVILVSHD 509
IK Q GVI ++HD
Sbjct: 211 IKVLQKEMSMGVIFITHD 228
Score = 39.8 bits (93), Expect = 0.004
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKST----FLNLLK---GELTPNKGELRKSP------- 397
+EKV+F L ++LVG +G GKST L L++ GE+ N +
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQ----LGMFGL-PSYAHT 448
R I Q L P T + +M+ LP + + + L GL P +A
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVI 504
P + SGGQ+ R+ +A NP ++I DE + LD+ + I+ L + +++ +
Sbjct: 460 YP-HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 505 LVSHD 509
+SHD
Sbjct: 519 FISHD 523
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 41.5 bits (98), Expect = 4e-04
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL--AEAIKNY---QGGVIL 505
+R +SGG++ RV++AE ++ +L D T LD S AL + I+
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD--SSTALEILKCIRTMADVLKTTTF 173
Query: 506 VS 507
VS
Sbjct: 174 VS 175
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 42.1 bits (99), Expect = 4e-04
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 51/196 (26%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK------------GELTPNKGELR----- 394
L+ +N + AL+GP+G GKST L L G+LT + ++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY-----------------EKSRRQ 436
R+++G Q P + M ++ N+ Y E+S R
Sbjct: 79 ADLRIKVGMVFQ----------KPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG 128
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALA 493
++ LSGGQ+ R+ +A PD++++DEPT+ LD I+ L
Sbjct: 129 AALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 494 EAI-KNYQGGVILVSH 508
E + KNY +++V+H
Sbjct: 189 EELKKNYT--IVIVTH 202
Score = 29.0 bits (65), Expect = 5.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+EN L + + NL I + + L+GP+G GK+TLLR
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLR 47
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 42.1 bits (99), Expect = 4e-04
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 52/199 (26%)
Query: 358 GLDMESRV----ALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPRLRIGKFDQHSGEH 411
GL++E R A++GPNG GKST L G + G + F
Sbjct: 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---------FKGKDLLE 69
Query: 412 LFPDDTPCEYLMKLFNLPYE---KSRR---QLGMFGLPSYAHTIPI-------------- 451
L P+D E + F P E S + Q + + SY P+
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129
Query: 452 -----RDL---------SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
DL SGG+K R + ++ + P++ ILDE + LDI+++ +A+ +
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 498 NYQGG---VILVSHDERLI 513
+ + G I+V+H +R++
Sbjct: 190 SLRDGKRSFIIVTHYQRIL 208
Score = 38.2 bits (89), Expect = 0.006
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 44/247 (17%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-------TRALAI 112
+ +++ +S + + NL++ G + ++GPNG GK+TL +A T
Sbjct: 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61
Query: 113 PSSIDLLYCEQEVEASD------DSAVNI-------VLSADKNRVKLLKECSKLERDESG 159
DLL E A + V I L N V+ + L+R +
Sbjct: 62 FKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQ 121
Query: 160 D---NQLRLTEVYDEL--KSIEA--DAAEPRARRIL----------------AGLGFTTI 196
D ++ L ++ ++L +S+ E + IL +GL +
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 181
Query: 197 YIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQK 256
I + V+ +R K++ ++V+H Q L+ I D +H+ + G+FTL K++ Q
Sbjct: 182 KIVADGVNS-LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG 240
Query: 257 RKELTKE 263
LT++
Sbjct: 241 YGWLTEQ 247
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 41.7 bits (98), Expect = 4e-04
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 68/213 (31%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELR----- 394
+ G L ++ + AL+GP+G GKSTFL L +L P +GE+
Sbjct: 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74
Query: 395 -KSPRL-------RIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY--------------- 430
P + R+G Q FP +F N+ Y
Sbjct: 75 IYDPHVDVVELRRRVGMVFQKPNP--FPK--------SIFENVAYGLRVNGVKDKAYLAE 124
Query: 431 --EKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEP 480
E+S R ++ ++D LSGGQ+ R+ +A P++L++DEP
Sbjct: 125 RVERSLRHAALWD--------EVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176
Query: 481 TNNLD---IESIDALAEAIK-NYQGGVILVSHD 509
+ LD + I+ L +K Y +I+V+H+
Sbjct: 177 ASALDPIATQKIEELIHELKARYT--IIIVTHN 207
Score = 31.3 bits (71), Expect = 1.00
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 67 LSAKGVELF-------HNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ A+G+ F H+ +L+ + L+GP+G GK+T LR
Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLR 50
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 42.0 bits (99), Expect = 4e-04
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 509
LSGGQ+ R+ +A PDIL++DEP + LD S L E + KNY +I+V+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTHN 221
Score = 31.2 bits (71), Expect = 1.1
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 52 TVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
T + + + ++ + E ++Q + L+GP+G GK+T LR
Sbjct: 13 TFPEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLR 64
Score = 30.1 bits (68), Expect = 2.9
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 357 FGLDMESR----VALVGPNGIGKSTFLNLL 382
G+DM+ AL+GP+G GKST+L L
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.6 bits (98), Expect = 5e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 509
LSGGQ+ R+ +A P++L++DEPT+ LD S I+ L + +K +Y +++V+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT--IVIVTHN 204
Score = 34.3 bits (79), Expect = 0.13
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+ G L+K+N ++ AL+GP+G GKSTFL L
Sbjct: 12 FYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTL 49
Score = 33.1 bits (76), Expect = 0.32
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I V++ L + NL I + L+GP+G GK+T LR
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLR 47
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 41.9 bits (98), Expect = 5e-04
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 37/183 (20%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P + +++++F Y K+L E V+ + A++GP+G GKSTFL L + + E+
Sbjct: 6 PAIKVNNLSFYYDTQKIL-EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEV 63
Query: 394 RKSPRLRIGKFDQHSGEH-------------LFPDDTPCEYLMKLF-NLPYEKS----RR 435
R R+ F+Q+ E + P P + M ++ N+ Y R
Sbjct: 64 RVEGRVEF--FNQNIYERRVNLNRLRRQVSMVHP--KPNLFPMSVYDNVAYGVKIVGWRP 119
Query: 436 QLGMFGLPSYA-----------HTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTN 482
+L + + A H I DLSGGQ+ R+ +A P +L++DEP
Sbjct: 120 KLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 483 NLD 485
LD
Sbjct: 180 GLD 182
Score = 31.2 bits (70), Expect = 1.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
IKV N S ++ +++I + ++GP+G GK+T L+
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLK 51
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 41.6 bits (98), Expect = 5e-04
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 79/219 (36%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELRKSPRL 399
Y G +E VN ++ S A +GP+G GKST L L E+ P +GE+
Sbjct: 13 YYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD--- 69
Query: 400 RIGKFDQHSGEHLF-PDDTPCEYLMKLFNLPYEKSRRQLGM-FGLPSYAHTIPIRD---- 453
GE L+ P P RR +GM F P+ T+ IRD
Sbjct: 70 ---------GEDLYGPGVDPVAV------------RRTIGMVFQRPNPFPTMSIRDNVVA 108
Query: 454 ----------------------------------------LSGGQKARVALAELTLNNPD 473
LSGGQ+ R+ +A PD
Sbjct: 109 GLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPD 168
Query: 474 ILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 509
+L++DEP + LD S I+ L +K +++V+H+
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN 206
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 41.4 bits (97), Expect = 6e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 509
LSGGQ+ R+ +A PD++++DEPT+ LD S ++ L + +K +Y +I+V+H+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS--IIIVTHN 225
Score = 28.7 bits (64), Expect = 8.8
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 35 LENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPN 94
+ ++ ++ + V D +N +L N NL I ++GP+
Sbjct: 6 VNVQVKNEEKIETAPKKVVFD------TQNLNLWYGEDHALKNINLDIHENEVTAIIGPS 59
Query: 95 GHGKTTLLRHIATRALAIPS 114
G GK+T ++ + +PS
Sbjct: 60 GCGKSTYIKTLNRMVELVPS 79
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 41.2 bits (96), Expect = 7e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 44/220 (20%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLL--------- 382
P + + V F Y +VL N +D R A++GP+G GKST L L
Sbjct: 3 PKIKIRGVNFFYHKHQVL---KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 383 ---KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY-------- 430
+G + + + SP L + + G +F P + +F N+ +
Sbjct: 60 ARLEGAVLLDNENIY-SPNLDVVNLRKRVG-MVFQQPNP--FPKSIFDNVAFGPRMLGTT 115
Query: 431 ---------EKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
EKS RQ ++ + H + LSGGQ+ R+ +A + P+++++DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA-LSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 481 TNNLDIES---IDALAEAIKNYQGGVILVSHDERLIRETD 517
+ LD S I+ L + +K I+ + ++ R +D
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASD 214
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 41.1 bits (96), Expect = 9e-04
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 44/250 (17%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL-------NLLKGELTPNKGELRK-- 395
+ GG + L V+ + + +A +GP+G GKST L +L+ G + R
Sbjct: 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN 88
Query: 396 --SPRLRIGKFDQHSGEHLF--PDDTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAH 447
++ K + G +F P+ P + P Y+ + +L L A
Sbjct: 89 IYDSQINSVKLRRQVG-MVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAI 147
Query: 448 TIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAI 496
++D LSGGQ+ R+ +A PD+L++DEP + LD ++ L +
Sbjct: 148 WEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207
Query: 497 KNYQGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDY---REKLLT-SLGEAMV 551
K Q +I+V+H+ ++ R D + FN + D+Y R KL+ S E M
Sbjct: 208 KE-QYTIIMVTHNMQQASRVADWTAF---------FNTEIDEYGKRRGKLVEFSPTEQMF 257
Query: 552 YNPSVAAEQD 561
+P ++
Sbjct: 258 GSPQTKEARE 267
Score = 35.8 bits (82), Expect = 0.041
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 40 VSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKT 99
++ SS++ S +T++ + +VE + G + +L+I + + +GP+G GK+
Sbjct: 1 MTYSSRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKS 60
Query: 100 TLLR 103
TLLR
Sbjct: 61 TLLR 64
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 40.6 bits (96), Expect = 9e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LS GQ+ + LA L IL+LDE T ++D E+ + + I+ V+ ++H R
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH--R 197
Query: 512 L 512
L
Sbjct: 198 L 198
Score = 32.9 bits (76), Expect = 0.34
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 339 HDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+V+ Y P +L+ ++F + +V +VG G GKS+ L L
Sbjct: 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL 50
Score = 32.1 bits (74), Expect = 0.60
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 59 DIKVENFSLS-AKGVEL-FHNANLQIASGRRYGLVGPNGHGKTTLL 102
DI+ +N SL + N + I G + G+VG G GK++LL
Sbjct: 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL 47
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 40.4 bits (94), Expect = 0.001
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-----IKNYQGGVILVS 507
+LSGGQ+ R+ +A N +I+ LD+P + LDI D L + +++ + ++LV+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 508 HDERLIRETDCELWALEKKN 527
H + + D W + K+
Sbjct: 200 HKLQYLPHAD---WIIAMKD 216
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 41.6 bits (97), Expect = 0.001
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 18/75 (24%)
Query: 455 SGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----------KN 498
S GQK R+ALAE N I+ LDEPT NLD E+I++LA A+ +N
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260
Query: 499 YQGGVILVSHDERLI 513
+Q +++++HDE +
Sbjct: 1261 FQ--LLVITHDEDFV 1273
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 40.3 bits (95), Expect = 0.001
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 454 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ---GGVI 504
LSGG+ R+ LA LT +L +LDEP+ L D L E +K + V+
Sbjct: 138 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193
Query: 505 LVSHDERLIRETD 517
+V HDE IR D
Sbjct: 194 VVEHDEDTIRAAD 206
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 41.3 bits (97), Expect = 0.001
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQG 501
H I LSGG + +V + L P+IL+LDEPT +D+ E +AE K +G
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 502 GVILVSHDERLIRETD 517
+I+ S L+ TD
Sbjct: 444 IIIISSEMPELLGITD 459
Score = 37.0 bits (86), Expect = 0.026
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+++ +PG K L + VN + S AL+G NG GKST L L G + G +
Sbjct: 3 NISKSFPGVKAL-DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI 55
Score = 36.6 bits (85), Expect = 0.032
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
N S S GV+ N NL++ + L+G NG GK+TLL+
Sbjct: 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLK 42
Score = 28.9 bits (65), Expect = 8.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSH 508
LS Q + +A+ N I+I+DEPT++L + ++ L I K G++ +SH
Sbjct: 134 TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 347 GGKVLLEKVNFGLDMES--------RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
G +VL+ G +E L G +G+GKST LN L EL GE+ +
Sbjct: 12 GYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPELDLRTGEISEK 69
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 40.0 bits (93), Expect = 0.002
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 25/188 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL--------------NLLKGELTPNKGE 392
G K L +N ++ AL+G +G GKSTFL L++ E K +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 393 LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---------RQLGMFGLP 443
+ R +G Q + Y KL + K +++G+F
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQG 501
LSGGQ+ R+ +A P +L+LDEPT+ LD S + E +K ++
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 502 GVILVSHD 509
+I+V+H+
Sbjct: 193 SMIMVTHN 200
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 44 SKASSKRSTVDDNSVDIKVENFSLSAKGVELF-------HNANLQIASGRRYGLVGPNGH 96
S + + + +++ E +L + + LF + +++I R +GP+G
Sbjct: 3 SHGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGC 62
Query: 97 GKTTLLR 103
GK+TLLR
Sbjct: 63 GKSTLLR 69
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSH 508
LSGGQ+ R+ +A P++L+LDEPT+ LD S I+ L +K+ + +++V+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTH 225
Score = 30.8 bits (70), Expect = 1.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDM---ESRV-ALVGPNGIGKSTFL 379
L + ++ Y + L F + M ++RV A +GP+G GKST L
Sbjct: 23 QTALEVRNLNLFYGDKQAL-----FDISMRIPKNRVTAFIGPSGCGKSTLL 68
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 40.6 bits (95), Expect = 0.002
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 449 IPIRD--LSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNY--QGG 502
P RD LS G +ALA L L+ P +L+LDEP +L + + ALAE +++ +
Sbjct: 264 DPFRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ 323
Query: 503 VILVSHDERLIR--ETDCELW 521
VI+ +H RL+ E W
Sbjct: 324 VIVSTHSPRLLNAVEEHSVFW 344
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 451 IRDLSGGQKA-------RVALAEL-----TLNNPDILILDEPTNNLDIESIDALAEAIKN 498
LSGG+K ALA P ++ LDE LD E+I +L E ++
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 39.8 bits (94), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ +L +A G LVGP+G GK+TLLR +A
Sbjct: 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA 51
Score = 39.1 bits (92), Expect = 0.004
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
R+LSGGQ+ RVA+ + P + + DEP +NLD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Score = 33.3 bits (77), Expect = 0.28
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFL 379
L L V Y G +V G+D++ + LVGP+G GKST L
Sbjct: 4 LKLQAVRKSYDGKT----QVIKGIDLDVADGEFIVLVGPSGCGKSTLL 47
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 40.3 bits (95), Expect = 0.003
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 454 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ-GG--VI 504
LSGG+ R+ LA LT +L +LDEP+ L + L E +K + G VI
Sbjct: 482 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537
Query: 505 LVSHDERLIRETD 517
+V HDE IR D
Sbjct: 538 VVEHDEDTIRAAD 550
Score = 32.6 bits (75), Expect = 0.73
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 454 LSGGQKARVALA-ELTL--NNPDILILDEPTNNLDIESIDALAEAIKN--YQGG-VILVS 507
LSGG+ RV LA EL+ + ILDEPT L + I L E + +G VI++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 508 HDERLIRETD 517
H+ +I+ D
Sbjct: 883 HNLDVIKTAD 892
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 38.9 bits (91), Expect = 0.004
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 453 DLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILV 506
++SGG Q+ +ALA L P +I DEPT +LD+ + +D L ++ G++LV
Sbjct: 140 EMSGGMLQRMMIALALLC-EAP-FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197
Query: 507 SHD 509
+HD
Sbjct: 198 THD 200
Score = 31.6 bits (72), Expect = 0.96
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKT 99
I++ N +L A L H +L + GR LVG +G GK+
Sbjct: 5 IELRNIALQAAQP-LVHGVSLTLQRGRVLALVGGSGSGKS 43
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 39.8 bits (93), Expect = 0.005
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 450 PIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKN--YQG-GV 503
P+ LSGG+ R+ LA L P + +LDEPT L I AL +++ +QG V
Sbjct: 806 PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865
Query: 504 ILVSHDERLIRETD 517
+++ H+ +++ D
Sbjct: 866 VIIEHNMHVVKVAD 879
Score = 38.7 bits (90), Expect = 0.011
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 441 GLPSYAHTIPIRDLSGGQKARVALA-----ELTLNNPDILILDEPTNNLDIESIDALAEA 495
GLP + LSGG++ R ALA EL ILDEP+ L + L
Sbjct: 464 GLPYLTPERALATLSGGEQERTALAKHLGAELI---GITYILDEPSIGLHPQDTHKLINV 520
Query: 496 IKNY--QGG-VILVSHDERLIRETD 517
IK QG V+LV HDE++I D
Sbjct: 521 IKKLRDQGNTVLLVEHDEQMISLAD 545
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 39.5 bits (92), Expect = 0.005
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 451 IRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 501
I LSGG+K RVA+A+ N+ +LI+DEPT LD + L + I+
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 502 G---VILVSHDERLIRETD 517
VI++SH L+ D
Sbjct: 859 DIPQVIMISHHRELLSVAD 877
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 38.6 bits (90), Expect = 0.005
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHD 509
LSGGQ+ R+ +A P+++++DEP + LD S + E + Q +I+V+H+
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
Score = 29.0 bits (65), Expect = 6.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 51 STVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
ST++ ++ EN ++ N L I + +GP+G GK+T+LR
Sbjct: 2 STLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILR 54
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 39.3 bits (92), Expect = 0.006
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--- 500
P+ LSGG++ R+AL+ N +LILDEPT LD E L + ++ Y
Sbjct: 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI 844
Query: 501 GGVILVSHDERL 512
VI+VSHDE L
Sbjct: 845 PQVIIVSHDEEL 856
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 38.3 bits (89), Expect = 0.007
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILVS 507
LSGGQ+ R+ +A +P+++++DEP + LD IE D + E + Y V++V+
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE--DLIEELAEEYT--VVVVT 256
Query: 508 HD 509
H+
Sbjct: 257 HN 258
Score = 35.6 bits (82), Expect = 0.055
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
L + D+ Y G L+ V+ + +S AL+GP+G GKSTFL L
Sbjct: 43 DAKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCL 91
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 38.1 bits (89), Expect = 0.008
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 509
LSGGQ+ R+ +A P++L+LDEP + LD S I+ L +K +Y V++V+H+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYT--VVIVTHN 214
Score = 36.5 bits (85), Expect = 0.023
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126
N NL IA + +GP+G GK+TLLR R LY EQ E
Sbjct: 30 KNINLDIAKNQVTAFIGPSGCGKSTLLR-TFNRMYE-------LYPEQRAE 72
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 38.1 bits (88), Expect = 0.008
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILVS 507
LSGGQ+ R+ +A P++L+LDEP + LD +E + + E K+Y + LV+
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL--MVELKKDYT--IALVT 205
Query: 508 HD-ERLIRETD 517
H+ ++ IR D
Sbjct: 206 HNMQQAIRVAD 216
Score = 29.6 bits (66), Expect = 3.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++++ I G +GP+G GK+T+LR +
Sbjct: 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSL 54
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 37.9 bits (88), Expect = 0.009
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 509
LSGGQ+ R+ +A P+++++DEP + LD S + E + KN+ +++V+H+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFT--IVIVTHN 212
Query: 510 -ERLIRETD 517
++ +R +D
Sbjct: 213 MQQAVRVSD 221
Score = 36.3 bits (84), Expect = 0.031
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 47 SSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
S K + ++ I ++N ++S E N I G+ L+GP+G GK+T+LR +
Sbjct: 1 SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 37.6 bits (87), Expect = 0.009
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 334 PVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
+L V+ Y GK+ L +V+ ++ V L+G NG GK+T L L G+ G
Sbjct: 4 VMLSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
Query: 392 ------ELRKSPRLRIGKFDQH---SGEHLFPDDTPCEYL-MKLF----NLPYEKSRRQL 437
++ +I + G +F T E L M F + E+ +
Sbjct: 62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY 121
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
+F +SGG++ +A+ ++ P +L+LDEP+
Sbjct: 122 ELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Score = 34.1 bits (78), Expect = 0.13
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+ + S ++ H +L I G L+G NG GKTTLL
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL 48
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 38.4 bits (89), Expect = 0.009
Identities = 50/211 (23%), Positives = 78/211 (36%), Gaps = 39/211 (18%)
Query: 336 LGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
+ L DV + L ++ + V +VG NG GKST L G P +G
Sbjct: 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397
Query: 392 E--LRKSPRLRIGKFDQH-------SGEHLFPD------------DTPCEYLMKLFNLPY 430
E L + + D + HLF D D +YL +L +
Sbjct: 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRL-EIAD 456
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE--- 487
+ G ++ T LS GQ+ R+AL L + IL+ DE + D
Sbjct: 457 KVKIEDGG------FSTTT---ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKR 507
Query: 488 -SIDALAEAIKNYQGGVILVSHDERLIRETD 517
+ L +K +I++SHD++ D
Sbjct: 508 FFYEELLPDLKRQGKTIIIISHDDQYFELAD 538
Score = 33.0 bits (75), Expect = 0.47
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 42 QSSKASSKRSTVDDNSVD-IKVENFSLSAKGVEL---FHNA--NLQIASGRRYGLVGPNG 95
+ S A + D SVD I++++ ++ K E F +L+IA G +VG NG
Sbjct: 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENG 378
Query: 96 HGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS 131
GK+TL + L IP ++L V S DS
Sbjct: 379 CGKSTLAKLFC--GLYIPQEGEILLDGAAV--SADS 410
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 37.6 bits (88), Expect = 0.009
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 34/184 (18%)
Query: 355 VNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
++F GLD + GP G GKST L+ + L G+ + R + GE
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAITYALY---GKTPRYGRQENLRSVFAPGE--- 73
Query: 414 PDDTPCEYLMKLFNLPYEKSRRQLGM--------FGLP----SYAHTIPIRDLSGGQKAR 461
D + +L Y + R G+ LP P+ LSGG+
Sbjct: 74 -DTAEVSFTFQLGGKKY-RVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFL 131
Query: 462 V------ALAELTLNNP----DILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSH 508
AL+E+ N + L +DE LD E+++A+A A++ + V ++SH
Sbjct: 132 ASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISH 191
Query: 509 DERL 512
E L
Sbjct: 192 VEEL 195
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.7 bits (87), Expect = 0.010
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 509
+LSGGQ+ R+ +A P+++++DEP + LD S I+ L E +K + +I+V+H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.7 bits (86), Expect = 0.011
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 260 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 319
L +EY+ ++ + + K+ E + KA K+ A K K + + K+ KPR +
Sbjct: 47 LNEEYKDLKESLEA---ALLDKK--ELKAWEKAEKK-AEKAKAKAEKKKAKKEEPKPRLF 100
Query: 320 IVKF 323
++ F
Sbjct: 101 VLDF 104
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 38.3 bits (89), Expect = 0.011
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--ELRKSPRLRIGKFDQHSG 409
L ++F + V ++G NG GKST NL+ G PNKG +++ S L I +G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-IAISSGLNG 98
Query: 410 EHLFPDDTPCEYLMKLFNLPYEKSRR---QLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466
+ ++ + LM L EK + ++ F P++ S G K+R+ A
Sbjct: 99 QLTGIENIELKGLM--MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAI 156
Query: 467 LTLNNPDILILDE 479
NPDIL++DE
Sbjct: 157 SVHINPDILVIDE 169
Score = 30.6 bits (69), Expect = 2.8
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 212 KTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK------GNFTLFKKMYVQKRKELTKEYE 265
KT+ +SH S + + CT + L ++ Y ++ F K Y Q E K++
Sbjct: 194 KTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVEERKDF- 252
Query: 266 LQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQK 303
+E+QI + + + +++ R+ K K+ +RK +K
Sbjct: 253 -REEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFKKK 289
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 37.1 bits (86), Expect = 0.021
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDA------LAEAIKNYQGGVILVSHDE 510
QK +A+A N P +LI DEPTN +E L+ +N ++L+SHD
Sbjct: 164 CQKVMIAIA--LANQPRLLIADEPTN--SMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219
Query: 511 RLIRE 515
++I +
Sbjct: 220 QMISQ 224
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 36.9 bits (86), Expect = 0.022
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
L+G +G+GKST +N L EL GE+ +
Sbjct: 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEK 198
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 36.6 bits (85), Expect = 0.023
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----- 485
E S R+ G++ P LSGGQ+ R+ +A +P+++++DEP + LD
Sbjct: 141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATA 200
Query: 486 -IES-IDALAEAIKNYQGGVILVSH 508
+E ID L + NY +++V+H
Sbjct: 201 KVEELIDELRQ---NYT--IVIVTH 220
Score = 35.5 bits (82), Expect = 0.058
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+ G K L V+ + ++ A +GP+G GKSTFL L
Sbjct: 28 FYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65
Score = 32.8 bits (75), Expect = 0.39
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 43 SSKASSKRSTVDDNSVDIKVENFSLSAKGVELF-------HNANLQIASGRRYGLVGPNG 95
A K + + +IK + A+ V +F + +L I +GP+G
Sbjct: 1 YEMADEKAADKKATATEIK-----MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSG 55
Query: 96 HGKTTLLR 103
GK+T LR
Sbjct: 56 CGKSTFLR 63
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 36.0 bits (83), Expect = 0.040
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 513
LS G K + LA L+ IL+LDEP+ +LD + + + +K ++ + R+
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 514 RETDCE-LWALEKKNIRKFN 532
+C+ +E+ +R+++
Sbjct: 199 AMLECQRFLVIEENKVRQYD 218
Score = 33.3 bits (76), Expect = 0.30
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 340 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
D+T Y GG +LE ++F + RV L+G G GKST L+
Sbjct: 7 DLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAF 50
Score = 30.2 bits (68), Expect = 2.8
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 67 LSAK----GVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
L+AK G + N + I+ G+R GL+G G GK+TLL
Sbjct: 8 LTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLL 47
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 35.5 bits (82), Expect = 0.042
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH---S 408
L+ V+F + ++ +VG G GKST + L L +G++ + + I S
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPLEDLRS 82
Query: 409 GEHLFPDDTPCEYLMKLF------NL-PY-EKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460
+ P D LF NL P+ E S ++ +G + +LS GQ+
Sbjct: 83 SLTIIPQDP------TLFSGTIRSNLDPFDEYSDEEI--YGALRVSEGG--LNLSQGQRQ 132
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNYQGGVIL-VSHDERLIRETD 517
+ LA L P +L+LDE T ++D + + + I + + IL ++H R I + D
Sbjct: 133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYD 191
Score = 31.6 bits (72), Expect = 0.72
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 59 DIKVENFSL--SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
+I+VEN S+ + + N + ++ +G + G+VG G GK+TL
Sbjct: 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL 50
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 35.7 bits (83), Expect = 0.049
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 454 LSGGQKARVALAELTLNNPD----ILILDEPTNNLDIESIDALAEAIKN--YQGG-VILV 506
LSGG+ R+ LA+ L+ + ILDEPT L + L E ++ +G V+++
Sbjct: 170 LSGGEAQRIKLAK-ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228
Query: 507 SHDERLIRETD 517
H+ +I+ D
Sbjct: 229 EHNLDVIKCAD 239
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.3 bits (81), Expect = 0.055
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 509
LSGGQ+ R+ +A +P+++++DEP + LD S I+ L +K +++V+H+
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHN 204
Score = 32.6 bits (74), Expect = 0.38
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+L+ VN + S AL+GP+G GKSTF+ L
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
Score = 31.1 bits (70), Expect = 1.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+VEN + + N NL I L+GP+G GK+T +R
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIR 47
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 36.1 bits (84), Expect = 0.056
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 450 PIRDLSGGQKARVALA-----ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---G 501
LSGG+ R+ LA LT + +LDEP+ L L +K +
Sbjct: 485 AAGTLSGGEAQRIRLATQIGSGLT---GVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGN 541
Query: 502 GVILVSHDERLIRETD 517
+I+V HDE IR D
Sbjct: 542 TLIVVEHDEDTIRAAD 557
Score = 34.6 bits (80), Expect = 0.17
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 454 LSGGQKARVALA-ELT--LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVS 507
LSGG+ R+ LA EL+ + ILDEPT L + I L E ++ +G V+++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 508 HDERLIRETDC 518
H+ +I+ D
Sbjct: 890 HNLDVIKTADY 900
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 35.3 bits (82), Expect = 0.067
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 365 VALVGPNGIGKSTFLNLLKGE 385
VAL+G +G+GKST +N L GE
Sbjct: 198 VALLGSSGVGKSTLVNALLGE 218
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 34.7 bits (81), Expect = 0.084
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
LVG +G+GKST LN L EL GE+ +
Sbjct: 88 SVLVGQSGVGKSTLLNALLPELVLATGEISEK 119
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 33.7 bits (77), Expect = 0.095
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
V L GP+G GK++ L EL + + GK DQ P + L +
Sbjct: 27 VLLTGPSGTGKTSLLR-----------ELLEGLLVAAGKCDQA---ERNPPYAFSQALRE 72
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI-LDEPTNN 483
L + +L + + + G Q L L +++ LD+
Sbjct: 73 LLRQLLRELAAELLLLREA-LLAALGAELIEGLQDLVELLERLLARARPLVLVLDD-LQW 130
Query: 484 LDIESIDALAEAIKN-YQGGVILV 506
D ES+D LA ++ + +++V
Sbjct: 131 ADEESLDLLAALLRRLERLPLLVV 154
Score = 29.9 bits (67), Expect = 2.0
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--DSAVNIVLSADKNRVKLL 147
L GP+G GKT+LLR + L D S + +L + LL
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLRELAAELLLL 88
Query: 148 KECSKLERDESGDNQLRLTEVYDELKSIEADA 179
+E L + L ++ + L+ + A A
Sbjct: 89 RE--ALLAALGAELIEGLQDLVELLERLLARA 118
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 34.4 bits (80), Expect = 0.12
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 367 LVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLR 400
+VG +G+GKSTF+N L +L P+K +
Sbjct: 9 VVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHIT 43
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 33.6 bits (77), Expect = 0.22
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 508
+L+ G+ +V +A N P +LI DEPTN ++ + L +N ++L+SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 509 DERLI 513
D +++
Sbjct: 218 DLQML 222
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 34.2 bits (79), Expect = 0.22
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQG-GV---ILVSHDERLIRETDCELWALEK 525
LILDEPT LD + L + +++ + GV ++VSHD+ L+ D +L +EK
Sbjct: 815 LILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAAD-DLVRVEK 868
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 31.9 bits (73), Expect = 0.22
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
RVALVG PN +GKST +N L G
Sbjct: 1 RVALVGRPN-VGKSTLINALTGA 22
>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG).
The developmentally regulated GTP-binding protein (DRG)
subfamily is an uncharacterized member of the Obg
family, an evolutionary branch of GTPase superfamily
proteins. GTPases act as molecular switches regulating
diverse cellular processes. DRG2 and DRG1 comprise the
DRG subfamily in eukaryotes. In view of their widespread
expression in various tissues and high conservation
among distantly related species in eukaryotes and
archaea, DRG proteins may regulate fundamental cellular
processes. It is proposed that the DRG subfamily
proteins play their physiological roles through RNA
binding.
Length = 233
Score = 32.9 bits (76), Expect = 0.29
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 363 SRVALVGPNGIGKSTFLNLLKG 384
+RVALVG +GKST L+ L
Sbjct: 1 ARVALVGFPSVGKSTLLSKLTN 22
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 33.1 bits (76), Expect = 0.34
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 250 KKMYVQKRKELT-KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 308
+K Q+ KE KE E + K+ +++K + + + A KE+AR R ++ +
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKER 336
Query: 309 PKELLEKPREYIVKFRFPNPP 329
++ K R+ + K ++P PP
Sbjct: 337 GEKKKLKRRK-LGKHKYPEPP 356
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 32.3 bits (74), Expect = 0.35
Identities = 33/140 (23%), Positives = 47/140 (33%), Gaps = 31/140 (22%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC----EY 421
A+VGPNG GKS ++ + L G R F G +
Sbjct: 26 AIVGPNGSGKSNIVDAICFVL----GGKAAKLRRGSLLFLAGGGVK--AGINSASVEITF 79
Query: 422 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA---ELTLNNPDIL-IL 477
F + K + L SGG+K+ ALA L P +L
Sbjct: 80 DKSYFLVLQGKVEQIL-----------------SGGEKSLSALALIFALQEIKPSPFYVL 122
Query: 478 DEPTNNLDIESIDALAEAIK 497
DE LD + +++ IK
Sbjct: 123 DEIDAALDPTNRRRVSDMIK 142
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 32.3 bits (74), Expect = 0.35
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
L G G GKTTLL+ IA
Sbjct: 5 LQGEAGSGKTTLLQKIAL 22
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 363 SRVALVGPNGIGKSTFL 379
V L G G GK+T L
Sbjct: 1 RTVILQGEAGSGKTTLL 17
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 30.2 bits (69), Expect = 0.35
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNK 390
L GP+G GKST ++ ++ L P K
Sbjct: 24 TLLTGPSGSGKSTLIDAIQTLLVPAK 49
>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 33.4 bits (77), Expect = 0.39
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 361 MESRVALVGPNGIGKSTFLNLLKG 384
+ VALVG +GK+T N L G
Sbjct: 2 KKLTVALVGNPNVGKTTLFNALTG 25
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 33.0 bits (76), Expect = 0.40
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
RVALVG PN +GKS+ LN L GE
Sbjct: 213 RVALVGKPN-VGKSSLLNKLAGE 234
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 32.8 bits (75), Expect = 0.41
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQ 500
Y H + SGGQ R+ +A + P ++I DEP + LD+ SI A L + ++
Sbjct: 158 YPH-----EFSGGQCQRIGIARALILEPKLIICDEPVSALDV-SIQAQVVNLLQQLQREM 211
Query: 501 G-GVILVSHD 509
G +I ++HD
Sbjct: 212 GLSLIFIAHD 221
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 30.0 bits (68), Expect = 0.51
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
+A+ G +G GKST L +L
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQL 23
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 31.3 bits (71), Expect = 0.56
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 149
L GP G GKTTL R IA + L +E + + + L E
Sbjct: 24 LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA--ELFGHFLVRLLFELAE 81
Query: 150 CSKL 153
+K
Sbjct: 82 KAKP 85
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 30.3 bits (68), Expect = 0.90
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 87 RYGLVGPNGHGKTTLLRHIATRALAIP----SSIDLLYCEQEVEASDDSAVNIVLSADKN 142
+ GP G GK+TL + +A L IP + E++ + ++I L +
Sbjct: 1 IILITGPPGSGKSTLAKKLA-EKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEE 59
Query: 143 RV-KLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 187
+ +L K+ ++ +LRL E D + ++ R R +
Sbjct: 60 ILDELAKQEWVIDGVRESTLELRLEEA-DLVVFLDLPLPACRFRLL 104
Score = 29.6 bits (66), Expect = 1.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
+ + GP G GKST L +L
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKL 23
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 31.6 bits (72), Expect = 0.90
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 480 PTNNLDIESIDALAEAIKNYQGGV-ILVSHDERLIRET 516
P + D++++DAL ++ GGV IL+++ R IR
Sbjct: 95 PCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRP 132
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 30.9 bits (71), Expect = 0.92
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
++A++G PN +GKS+ LN L GE
Sbjct: 4 KIAIIGRPN-VGKSSLLNALLGE 25
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 32.1 bits (73), Expect = 1.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 83 ASGRRYGLVGPNGHGKTTLLRHIATRALA 111
A G LVGP G GKTT +A R +A
Sbjct: 183 AQGGVLALVGPTGVGKTTTTAKLAARCVA 211
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 32.1 bits (73), Expect = 1.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
L+ +++ ++G G GK+TFL L L E
Sbjct: 218 ALEKYAKLLILGAPGSGKTTFLQRLALWLAQRTLE 252
>gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain.
Length = 73
Score = 28.9 bits (65), Expect = 1.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSI 116
+ G G GKT I R LA S+
Sbjct: 15 VDGGPGTGKTATAAAIIARLLAAGRSV 41
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 29.9 bits (68), Expect = 1.2
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 149
L G +G GKTTLLR +A + + V + + LL++
Sbjct: 9 LTGESGSGKTTLLRRLAR------------------QLPNRRVVYVEAPSLGTPKDLLRK 50
Query: 150 -CSKLERDESGDNQLRLTE-VYDELKS 174
L SG L E + D LK
Sbjct: 51 ILRALGLPLSGGTTAELLEAILDALKR 77
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 87 RYGLVGPNGHGKTTLLRHI 105
L G G GKTTLL H+
Sbjct: 2 VTVLTGFLGSGKTTLLEHL 20
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 30.5 bits (70), Expect = 1.5
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
VA++G PN +GKST LN L G+
Sbjct: 6 VAIIGRPN-VGKSTLLNALVGQ 26
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 30.7 bits (70), Expect = 1.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
L+ E F ++ + SGR + GPN GK+T LR I
Sbjct: 9 VLLALTKGETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIG 50
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 31.1 bits (69), Expect = 1.6
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 267 QEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKE 311
++K+ R++ Q +K + QH HKA K++ RKR +KD + +E
Sbjct: 148 EKKKERQLAEQLAAKRLKDEQHRHKARKQELRKR-EKDRERARRE 191
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 31.2 bits (71), Expect = 1.7
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387
E + V +VGP GKST L +L
Sbjct: 64 ESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLL 98
Score = 30.1 bits (68), Expect = 3.8
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111
+E + + + + +VGP GK+TL ++A + LA
Sbjct: 56 LEEIADTWESKSESAGKVGVVM------VVGPVDSGKSTLTTYLANKLLA 99
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728) [Cellular processes,
Other].
Length = 262
Score = 30.9 bits (70), Expect = 1.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 84 SGRRYGLVGPNGHGKTTLLRHIA 106
SG L GP G GKTTL H+A
Sbjct: 20 SGYPVHLRGPAGTGKTTLAMHVA 42
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 31.2 bits (72), Expect = 1.7
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 454 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 492
LSGG+ RV LA EL TL ILDEPT L E I L
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTL-----YILDEPTTGLHFEDIRKL 872
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 30.9 bits (71), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 367 LVGPNGIGKSTFLNLLKGEL 386
L G +G+GKST LN L +L
Sbjct: 169 LAGQSGVGKSTLLNALAPDL 188
>gnl|CDD|218528 pfam05272, VirE, Virulence-associated protein E. This family
contains several bacterial virulence-associated protein
E like proteins. These proteins contain a P-loop motif.
Length = 198
Score = 30.4 bits (69), Expect = 1.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 367 LVGPNGIGKSTFLNLLKGE 385
L G G GKSTFL L GE
Sbjct: 57 LQGAQGSGKSTFLKKLGGE 75
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 31.0 bits (71), Expect = 1.8
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 260 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 319
L ++Y+ +++++ + K E + HKA K++ ++ K + KPR +
Sbjct: 45 LNEQYKEMKEELKA---ALLDK--KELKAWHKAQKKKEKQE-AKAAKAK-----SKPRLF 93
Query: 320 IVKF 323
++ F
Sbjct: 94 VLDF 97
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAI 112
G++G HGKTTL + + AI
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAI 26
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 30.9 bits (71), Expect = 1.8
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
++A++G PN +GKST +N L GE
Sbjct: 174 KIAIIGRPN-VGKSTLVNALLGE 195
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 30.4 bits (69), Expect = 1.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 260 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQK 303
+ E +L+E + +E K + ++K ER S K ++++ KR K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase. Proteins of the
YlqF family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases. The YlqF subfamily is represented in all
eukaryotes as well as a phylogenetically diverse array
of bacteria (including gram-positive bacteria,
proteobacteria, Synechocystis, Borrelia, and
Thermotoga).
Length = 171
Score = 30.2 bits (69), Expect = 1.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 364 RVALVG-PNGIGKSTFLNLLKG 384
R +VG PN +GKST +N L+G
Sbjct: 117 RAMVVGIPN-VGKSTLINRLRG 137
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 30.9 bits (70), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
RVALVG +GKS+ LN L E
Sbjct: 452 RVALVGRPNVGKSSLLNQLTHE 473
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 29.8 bits (68), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
+V + G PN +GKS+ LN L G
Sbjct: 5 KVVIAGKPN-VGKSSLLNALAGR 26
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 30.4 bits (70), Expect = 2.1
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
VA+VG PN +GKST LN L G+
Sbjct: 8 VAIVGRPN-VGKSTLLNALVGQ 28
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 30.8 bits (71), Expect = 2.2
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
++A++G PN +GKS+ +N L GE
Sbjct: 175 KIAIIGRPN-VGKSSLINALLGE 196
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 30.1 bits (69), Expect = 2.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIA 106
I G+R G+ G +G GKT LL IA
Sbjct: 12 IGKGQRIGIFGGSGTGKTVLLGMIA 36
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 30.3 bits (69), Expect = 2.3
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 364 RVALVGPNGIGKSTFLNLL-KGELTPNKGELR 394
RVA+VG GKST L +L +GEL +G+ R
Sbjct: 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKAR 32
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.5 bits (69), Expect = 2.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 255 QKRKELTKEYELQEKQIREM-KSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 308
+K+KE + ELQ+KQ E + + + KE+ Q K +E A++ K E
Sbjct: 81 RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
>gnl|CDD|213244 cd03277, ABC_SMC5_euk, ATP-binding cassette domain of eukaryotic
SMC5 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 213
Score = 29.9 bits (68), Expect = 2.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V IK+ENF ++ E +L + ++GPNG GK++++ I
Sbjct: 4 VRIKLENF-VTYDETEFRPGPSLNM-------IIGPNGSGKSSIVCAIC 44
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 29.9 bits (68), Expect = 2.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 451 IRDLSGGQKARVALAE-LTLNNPD---ILILDEPTNNLDIESIDALAEAIKN 498
++ LSGGQK+ VALA + D + DE LD + A+A IK
Sbjct: 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207
>gnl|CDD|197366 cd09916, CpxP_like, CpxP component of the bacterial
Cpx-two-component system and related proteins. This
family summarizes bacterial proteins related to CpxP, a
periplasmic protein that forms part of a two-component
system which acts as a global modulator of cell-envelope
stress in gram-negative bacteria. CpxP aids in combating
extracytoplasmic protein-mediated toxicity, and may also
be involved in the response to alkaline pH. Functioning
as a dimer, it inhibits activation of the kinase CpxA,
but also plays a vital role in the quality control
system of P pili. It has been suggested that CpxP
directly interacts with CpxA via its concave polar
surface. Another member of this family, Spy, is also a
periplasmic protein that may be involved in the response
to stress. The homology between CpxP and Spy suggests
similar functions. A characteristic 5-residue sequence
motif LTXXQ is found repeated twice in many members of
this family.
Length = 96
Score = 28.3 bits (64), Expect = 2.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 267 QEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPK 310
Q+ QI+ ++ ++ KA R+ +A +E+ R + D DE
Sbjct: 8 QKAQIKAIRQAARAQMKALRE-QMRAAREELRALLTADTFDEAA 50
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 29.6 bits (66), Expect = 2.8
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 248 LFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDD 307
L ++M ++R+E E E QE+Q RE + Q + ++ + +H + EQ + DDD
Sbjct: 138 LEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE---IIEQDESETESDDDK 194
Query: 308 EPK 310
K
Sbjct: 195 TEK 197
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 30.4 bits (69), Expect = 2.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPNKGE 392
+ +VG +G+GK+TF+N L L
Sbjct: 25 TIMVVGESGLGKTTFINTLFGTSLVDETEI 54
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 28.9 bits (65), Expect = 3.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATRALA 111
+VGP GKTTL+R +
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYLKR 26
>gnl|CDD|233051 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 365
Score = 30.0 bits (68), Expect = 3.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111
+L+++ G +VGPNG GKT LL I AL
Sbjct: 17 VDLELSPGVNV-IVGPNGQGKTNLLEAIYYLALG 49
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 29.7 bits (68), Expect = 3.1
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 49/190 (25%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ--HSGEH 411
+ F + A+VGPNG GKS ++ ++ L GE + + LR K +G
Sbjct: 17 TIPFPPGL---TAIVGPNGSGKSNIIDAIRWVL----GE-QSAKSLRGEKMSDVIFAGSE 68
Query: 412 -----------LFPDDTPCEY-------LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 453
L D++ Y + ++ P +K +R +
Sbjct: 69 TRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEAPGKKVQR---------------LSL 113
Query: 454 LSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV--ILVS 507
LSGG+KA ALA L + +LDE LD +++ A +K + I+++
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173
Query: 508 HDERLIRETD 517
H + + D
Sbjct: 174 HRKGTMEAAD 183
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.9 bits (68), Expect = 3.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 88 YGLVGPNGHGKTTLLRHIATRALAI 112
LVG +G GKTTL + AI
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI 26
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 30.1 bits (69), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 75 FHNANLQIASGRRYGLVGPNGHGKTTLL 102
+ +L+++ G LVG NG GKT LL
Sbjct: 14 YEELDLELSPGVNV-LVGENGQGKTNLL 40
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.4 bits (64), Expect = 3.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
L GP G GKST L L + G +K
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKHLGLPKKD 32
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit
delta; Provisional.
Length = 310
Score = 29.9 bits (68), Expect = 3.3
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 165 LTEVYDELKSIEADAAEPRAR-------RILAGLGFTTIYIPSSRVHEIMR 208
+ +++ K IE A E R R + LA G I S V M+
Sbjct: 137 IKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMK 187
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 29.9 bits (67), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRAL 110
I G Y L+GP G GKTT +A RA+
Sbjct: 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV 216
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 29.5 bits (67), Expect = 3.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 82 IASGRRY-GLVGPNGHGKTTLLRHIA 106
+ SG R + GP G GKTT L+
Sbjct: 14 LTSGDRVAVVQGPAGTGKTTSLKAAR 39
>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl
reductase (PTCR)-like, classical (c) SDRs. PTCR is a
classical SDR which catalyzes the NADPH-dependent
reduction of ketones on steroids and prostaglandins.
Unlike most SDRs, PTCR functions as a monomer. This
subgroup also includes human carbonyl reductase 1 (CBR1)
and CBR3. CBR1 is an NADPH-dependent SDR with broad
substrate specificity and may be responsible for the in
vivo reduction of quinones, prostaglandins, and other
carbonyl-containing compounds. In addition it includes
poppy NADPH-dependent salutaridine reductase which
catalyzes the stereospecific reduction of salutaridine
to 7(S)-salutaridinol in the biosynthesis of morphine,
and Arabidopsis SDR1,a menthone reductase, which
catalyzes the reduction of menthone to neomenthol, a
compound with antimicrobial activity; SDR1 can also
carry out neomenthol oxidation. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering). In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 225
Score = 29.5 bits (67), Expect = 3.5
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 435 RQLGMFGLPSYAHTIPI--RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
RQL G T+ + RD+ GQ A L L+ LD + SI+A
Sbjct: 18 RQLAKSG----PGTVILTARDVERGQAAVEKLRAEGLS-VRFHQLD--VTDD--ASIEAA 68
Query: 493 AEAIKNYQGGV-ILV 506
A+ ++ GG+ ILV
Sbjct: 69 ADFVEEKYGGLDILV 83
>gnl|CDD|203599 pfam07236, Phytoreo_S7, Phytoreovirus S7 protein. This family
consists of several Phytoreovirus S7 proteins which are
thought to be viral core proteins.
Length = 506
Score = 30.2 bits (68), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
E FS+ N + +++ + G+V P GHGK TL+
Sbjct: 239 ELFSVENGEGRRLKNDSFRVSESQIRGIVLPVGHGKDTLISR 280
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 30.1 bits (68), Expect = 3.6
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 256 KRKELTKEY--ELQE--KQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKE 311
KR+EL KEY +LQ+ K++ E+K + + E+AE + + LK++ ++ QK+ DE KE
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Query: 312 LLEK 315
+K
Sbjct: 426 KRQK 429
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 29.6 bits (67), Expect = 3.6
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 453 DLSGGQKARVAL----AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILV 506
+LSGGQ++ VAL A L + ILDE LD+ + IK + G I+V
Sbjct: 166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV 225
Query: 507 SHDE 510
S E
Sbjct: 226 SLKE 229
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 29.7 bits (67), Expect = 3.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
G PG L E + GL S V + GP G GK+ F
Sbjct: 8 GIPG---LDEILGGGLPRGSVVLITGPPGTGKTIFA 40
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 29.5 bits (67), Expect = 3.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNK 390
+ G +G GK+T + LL L
Sbjct: 3 IVFEGIDGAGKTTLIELLAERLEARG 28
>gnl|CDD|221130 pfam11527, ARL2_Bind_BART, The ARF-like 2 binding protein BART.
BART binds specifically to ARL2.GTP with a high affinity
however it does not bind to ARL2.GDP. It is thought that
this specific interaction is due to BART being the first
identified ARL2-specific effector. The function is not
completely characterized. BART is predominantly
cytosolic but can also be found to be associated with
mitochondria. BART is also involved in binding to the
adenine nucleotide transporter ANT1.
Length = 120
Score = 28.4 bits (64), Expect = 4.0
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 230 DIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260
+ + + +F +FKKM V++ EL
Sbjct: 86 NQQAKVIFEQLLAATDFLIFKKMMVKRNIEL 116
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.2 bits (69), Expect = 4.1
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Query: 250 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKA-ERQHSHKALKE-----QARKRVQK 303
+K Q KE KE + K++R+++ G + KA E + K L + + +K+ QK
Sbjct: 572 EKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQK 631
Query: 304 DDDDEPK--------------ELLEKP--REYIVKF 323
+ +E K E+L P +E IV+
Sbjct: 632 EKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQA 667
>gnl|CDD|131806 TIGR02759, TraD_Ftype, type IV conjugative transfer system coupling
protein TraD. The TraD protein performs an essential
coupling function in conjugative type IV secretion
systems. This protein sits at the inner membrane in
contact with the assembled pilus and its scaffold as
well as the relaxosome-plasmid DNA complex (through
TraM).
Length = 566
Score = 30.1 bits (68), Expect = 4.1
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 21/95 (22%)
Query: 13 LKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGV 72
K+ + Q + + G Q + E + + K S + S DIK+ L G
Sbjct: 125 FIKRGEQQSKDHFIRGSQLSSPKE---LIKKLKKSRRAS-------DIKIGGLPLIKFGS 174
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107
E H + I G G GK+ +R +
Sbjct: 175 ETQH---ILI--------HGTTGSGKSVAIRKLLR 198
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 840
Score = 30.1 bits (68), Expect = 4.4
Identities = 50/215 (23%), Positives = 73/215 (33%), Gaps = 57/215 (26%)
Query: 18 KYQQELSALSGGQGT-DELENFTVSQSSKASSKRSTVDDNSVDI---------KVENFSL 67
KY + L + D L N + ++ DD + I +V
Sbjct: 522 KYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDPQLRIREGRHPVVEQVLRTPF 581
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL------------AIPSS 115
+E+ HN + + + GPN GK+T +R A AL A
Sbjct: 582 VPNDLEMAHNRRMLL-------ITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPL 634
Query: 116 IDLLYCEQEVEASDD-------------SAVNIVLSADKNRVKLLKECSKLERDESGDNQ 162
D ++ + ASDD A NI+ +A +N + L DE G
Sbjct: 635 FDRIF--TRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLF--------DEIG--- 681
Query: 163 LRLTEVYDELKSIEADAAEPRARRILAGLGFTTIY 197
R T YD L ++ AE I A F T Y
Sbjct: 682 -RGTSTYDGL-ALAWAIAEYLHEHIRAKTLFATHY 714
>gnl|CDD|223873 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 28.8 bits (65), Expect = 4.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSI 116
L G G GKTTL+R IA + L + ++
Sbjct: 30 LSGDLGAGKTTLVRGIA-KGLGVDGNV 55
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 29.3 bits (66), Expect = 4.8
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDD 305
F L K ++ EL + + E Q + K + E ER+ + + +Q ++R Q D
Sbjct: 54 FELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQD 113
Query: 306 DDEPK 310
+ K
Sbjct: 114 ELARK 118
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 28.9 bits (66), Expect = 4.9
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 90 LVGPNGHGKTT 100
LVGPNG GKTT
Sbjct: 6 LVGPNGVGKTT 16
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 29.3 bits (66), Expect = 5.0
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 368 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK--------FDQHSGEHLFPDDTPC 419
G +G+GKS+ +N L + ++ S +L +GK F H G DTP
Sbjct: 126 AGQSGVGKSSLINALDPSVKQQVNDI--SSKLGLGKHTTTHVELFHFHGG---LIADTPG 180
Query: 420 EYLMKLFNLPYE 431
L++L E
Sbjct: 181 FNEFGLWHLEPE 192
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 29.4 bits (67), Expect = 5.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 352 LEKVNFGLDMESR---VALVGPNGIGKSTF-LNLL----KGELTPN 389
+E + FGL + + ++G G G++T L K E TP+
Sbjct: 17 VEALEFGLGIRHPGYNIFVLGEPGTGRTTLVRRYLEERAKKEPTPD 62
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 29.5 bits (67), Expect = 5.7
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
++A++G PN +GKS+ +N + GE
Sbjct: 180 KIAIIGRPN-VGKSSLINAILGE 201
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.1 bits (65), Expect = 5.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407
+ GPNG GK+T L+ ++ L L+KS I K D
Sbjct: 22 TLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIE 64
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 29.1 bits (66), Expect = 5.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 78 ANLQIASGRRY--GLVGPNGHGKTTL 101
A LQ RR G+ GP G GK+TL
Sbjct: 24 AALQAEPQRRTIVGIAGPPGAGKSTL 49
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 28.7 bits (65), Expect = 5.8
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
R+ + GP G+GK+T + + L KS +++G F
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELL--------KSEGVKVGGF 33
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 29.1 bits (66), Expect = 5.9
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 450 PIRDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIK-----NYQ 500
+ +LSGG+K ALA L + +LDE LD ++ +A I+ N+Q
Sbjct: 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQ 211
Query: 501 GGVI-----LVSHDERLI---RETDC 518
VI S + L+ R+ +C
Sbjct: 212 FIVISLKEEFFSKADALVGVYRDQEC 237
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 29.3 bits (66), Expect = 5.9
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI-GKFDQHSGEHLFPDDTP 418
VA++G +GKST LN L G+ ++ R RI G + + +F DTP
Sbjct: 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFI-DTP 56
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic
MutS6 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 218
Score = 28.9 bits (65), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ +L S R L GPN GK+TLLR +
Sbjct: 22 DVDLGATSPRILVLTGPNMGGKSTLLRTVC 51
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 29.3 bits (66), Expect = 6.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 90 LVGPNGHGKTTLLRHIATRALA 111
+VGP+G GK+TLL+ +A R LA
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLA 27
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 29.6 bits (67), Expect = 6.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 363 SRVALVGPNGIGKSTF 378
S V LVG +G GKSTF
Sbjct: 9 SLVVLVGASGSGKSTF 24
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 28.7 bits (64), Expect = 6.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATRALA 111
+R+ L G G GKTTLL +A A
Sbjct: 10 KRFILTGGPGAGKTTLLAALARAGFA 35
>gnl|CDD|116614 pfam08004, DUF1699, Protein of unknown function (DUF1699). This
family contains many archaeal proteins which have very
conserved sequences.
Length = 131
Score = 28.1 bits (63), Expect = 6.4
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 257 RKELTKEYELQEK---QIREMKSQGMSKEKAERQHSHKA 292
RK++ + Y + + +IRE+K++G+S E+ + S ++
Sbjct: 80 RKDINEYYTVSQSVIERIRELKAEGISNEEIAEKLSRES 118
>gnl|CDD|220422 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 29.1 bits (66), Expect = 6.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 91 VGPNGHGKTTLLRHIA 106
VG HGK+TLL +
Sbjct: 249 VGGGYHGKSTLLEALE 264
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 29.1 bits (66), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
VA++G +GKST LN L G+
Sbjct: 8 FVAIIGRPNVGKSTLLNALVGQ 29
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 29.1 bits (65), Expect = 6.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
F + I +VGPNG GKTT+L I
Sbjct: 21 FGESETTI-------IVGPNGSGKTTVLDAI 44
>gnl|CDD|235210 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 28.3 bits (64), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 361 MESRVALVGPNGIGKSTFLNLLKGELTPN 389
M V + G G+GK+T LN +L +
Sbjct: 1 MMKVVVVTGVPGVGKTTVLNKALEKLKED 29
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 28.9 bits (65), Expect = 7.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 81 QIASGRRYG----LVGPNGHGKTTLLRHIA 106
++ G R G L G GKTT LR A
Sbjct: 22 KLTKGLRKGELIILTAGTGVGKTTFLREYA 51
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 28.8 bits (65), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111
L G+R G+ G GK+TLL IA A A
Sbjct: 140 LTCGEGQRIGIFAGAGVGKSTLLGMIARGASA 171
>gnl|CDD|224930 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport and
metabolism].
Length = 189
Score = 28.5 bits (64), Expect = 7.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
V + G G+GK+T L + EL
Sbjct: 6 VVVITGVPGVGKTTVLKIALKEL 28
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 28.4 bits (64), Expect = 7.8
Identities = 33/164 (20%), Positives = 48/164 (29%), Gaps = 22/164 (13%)
Query: 365 VALVGPNGIGKSTFLNLLKGE--L---------TPNKGELRKSPRLRIGKFDQH--SGEH 411
+A+VG GKS+ LN L G L P L + P G G
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKDGLK 60
Query: 412 LFPD-DTPCEYLMKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSG---GQKARVA 463
F D E + + S + + L + + D G
Sbjct: 61 KFEDFSELREEIEDETDKISGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGDQD 120
Query: 464 LAELTLNNPDILILDEPTNNLDIES-IDALAEAIKNYQGGVILV 506
L E + DI++ N+ S LA + I V
Sbjct: 121 LTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGV 164
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 29.2 bits (66), Expect = 8.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 88 YGLVGPNGHGKTTLLRH 104
Y ++GP G GKTTLL++
Sbjct: 114 YLVIGPPGSGKTTLLQN 130
>gnl|CDD|221726 pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of
this family belong to the PD-(D/E)XK nuclease
superfamily.
Length = 201
Score = 28.2 bits (63), Expect = 8.5
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 290 HKALKEQARKRVQKDDDDEPKELLEKPREYIVKFR-----FPNPPYLPPPVLGLHDVTFG 344
H L+E + D E +EL E+ + + L +L L +
Sbjct: 43 HAVLEEFYEGLPEDDLLAEDEELEEELEAALERLEEFLESESRESLLSLAILALAEELKR 102
Query: 345 YPGGKVLLEKVNFGLDMESRVALVG 369
G V +E + F L+++ V L G
Sbjct: 103 SGGEPVAVE-LPFELELDEGVRLRG 126
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 28.8 bits (65), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111
+ L + G+R G+ +G GK+TLL IA A
Sbjct: 61 DGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA 95
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 28.4 bits (63), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
E ++ ++G G+GK+T LN L G+ P
Sbjct: 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP 35
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 28.3 bits (64), Expect = 8.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 90 LVGPNGHGKTTLLRHIA 106
+ GPN GK+T LR +A
Sbjct: 4 ITGPNMGGKSTYLRQVA 20
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.
Length = 318
Score = 28.5 bits (64), Expect = 8.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 90 LVGPNGHGKTTLLRHI 105
L G G GKTTLLRHI
Sbjct: 9 LTGFLGAGKTTLLRHI 24
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 28.7 bits (65), Expect = 8.9
Identities = 11/64 (17%), Positives = 32/64 (50%)
Query: 247 TLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 306
KK+ + K+ +E + ++K+ K + +E+ + + + +E+ +K+++
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Query: 307 DEPK 310
+E K
Sbjct: 470 EEKK 473
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 28.6 bits (64), Expect = 9.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 90 LVGPNGHGKTTLLRHIA 106
++GP GKTTLLR IA
Sbjct: 142 IIGPPQVGKTTLLRDIA 158
>gnl|CDD|235878 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 28.8 bits (65), Expect = 9.3
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATRALA------------IPSSIDL-LYCEQEVEASDDSA 132
RY L G G GK+T+L+ IA A P S+D+ + E D +A
Sbjct: 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMVIIPELNFAIFDSTA 274
Query: 133 VNIVLSADKN--RVKLLKECSKLERDESGDNQLR 164
+ + + + + E DE +++
Sbjct: 275 PHEYFPSREGDEIIDMYDELIDPGTDEKYAEEIK 308
>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members [Protein synthesis, Other].
Length = 276
Score = 28.2 bits (64), Expect = 9.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 364 RVALVG-PNGIGKSTFLNLLKG 384
R +VG PN +GKST +N L G
Sbjct: 120 RAMIVGIPN-VGKSTLINRLAG 140
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase is
also found in Gram-positive bacteria, archaea, and the
roundworm C. elegans. It may have a more general, but
still unknown function. Mutations have also been found
that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase activity
of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein interactions].
Length = 300
Score = 28.6 bits (64), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
+P K LL+++ RV + G G GKST L L EL
Sbjct: 17 HPEAKELLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.377
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,436,470
Number of extensions: 2982761
Number of successful extensions: 5338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5106
Number of HSP's successfully gapped: 1165
Length of query: 568
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 466
Effective length of database: 6,413,494
Effective search space: 2988688204
Effective search space used: 2988688204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.4 bits)