RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16366
(568 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 246 bits (630), Expect = 1e-71
Identities = 114/575 (19%), Positives = 197/575 (34%), Gaps = 112/575 (19%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR---AL 110
+D D+ FSL+ L + L++ RRYG+ GPNG GK+TL+R IA
Sbjct: 430 EDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF 489
Query: 111 AIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 170
+Y E +++ + +D + + + E ++ + +
Sbjct: 490 PTQEECRTVYVEHDIDGTH---------SDTSVLDFVFESGVGTKEA-------IKDKLI 533
Query: 171 ELKSIEADAAEP--------RARRILAGLGFT----------TIYIPSSRVH---EIMRT 209
E + A P + + LA T ++ + V + T
Sbjct: 534 EFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 210 WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQE- 268
T + +SHD FL+N+C II+ + KL YKGNFT F K + E
Sbjct: 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEF 653
Query: 269 ---------------KQIREMKSQGMSKEKAER-QHSHKALKEQARKRV----------- 301
K I ++ + + Q + + R+
Sbjct: 654 KFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKS 713
Query: 302 -----------------------------QKDDDDEPKELLEKPREYIVKFRFPNPPYLP 332
Q L + P EYI
Sbjct: 714 TLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF---QTGED 770
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+ + + + K+ R+A + K+T+ L N G
Sbjct: 771 RETMDRANRQINENDAEAM-NKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829
Query: 393 L---------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 442
+ + G+ + + + D F L ++ M GL
Sbjct: 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889
Query: 443 -PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
P IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++G
Sbjct: 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 949
Query: 502 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536
GVI+++H + E+WA++ + ++
Sbjct: 950 GVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984
Score = 152 bits (386), Expect = 3e-39
Identities = 64/287 (22%), Positives = 104/287 (36%), Gaps = 5/287 (1%)
Query: 256 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK 315
+ E + + E+ Q + + + +
Sbjct: 354 LKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFR 413
Query: 316 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIG 374
R PN L + F G K+LL K L R + GPNG G
Sbjct: 414 KRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCG 473
Query: 375 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
KST + + R + +H + D + +++ + E +
Sbjct: 474 KSTLMRAIANGQVDG---FPTQEECRTV-YVEHDIDGTHSDTSVLDFVFESGVGTKEAIK 529
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
+L FG +PI LSGG K ++ALA L N DIL+LDEPTN+LD ++ L
Sbjct: 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN 589
Query: 495 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
+ I +SHD + + E +RK+ G+F ++ +K
Sbjct: 590 YLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 136 bits (344), Expect = 3e-34
Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 73/342 (21%)
Query: 196 IYI---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241
Y PSS +V ++R K +LVV HD + L+ + D+IH+ ++
Sbjct: 249 FYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLS-DVIHV----VYG 303
Query: 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRV 301
G + +F + K R ++ + + E R R
Sbjct: 304 EPGVYGIF----------------SKPKGTRNGINEFLQGYLKD---------ENVRFRP 338
Query: 302 QKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDM 361
+ + E ++ RE +V++ Y G LE +
Sbjct: 339 YEIRFTKLSERVDVERETLVEYPRLVKDY-----------------GSFKLEVEPGEIRK 381
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WDLTVAYKPQYI--KAEYEGTVYEL 437
Query: 422 LMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
L K+ + + + L G+ DLSGG+ RVA+A L + DI +LD
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-EDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 479 EPTNNLDIESIDALAEAIKNYQ----GGVILVSHDERLIRET 516
EP+ LD+E A++ AI++ ++V HD +I
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538
Score = 122 bits (307), Expect = 2e-29
Identities = 49/194 (25%), Positives = 72/194 (37%), Gaps = 26/194 (13%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
D Y G + + V +VGPNG GK+T + +L G+L PN E S
Sbjct: 96 DCVHRY-GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 400 RIGKFDQHSGEHLFP----------------DDTP---CEYLMKLFNLPYEKSR--RQLG 438
I F + ++ F D P + +L E + +
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVK 214
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
L + + LSGG+ RVA+A L DEP++ LDI +A I
Sbjct: 215 ELELEN-VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 497 -KNYQGGVILVSHD 509
N V++V HD
Sbjct: 274 LANEGKAVLVVEHD 287
Score = 55.4 bits (134), Expect = 3e-08
Identities = 47/225 (20%), Positives = 73/225 (32%), Gaps = 35/225 (15%)
Query: 36 ENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPN 94
EN +K S D + VE L G +I G G+VGPN
Sbjct: 332 ENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPN 391
Query: 95 GHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLE 154
G GKTT ++ +A + P+ + + I + +LL SK++
Sbjct: 392 GIGKTTFVKMLA--GVEEPTEGKVEWDLTVAYKPQ----YIKAEYEGTVYELL---SKID 442
Query: 155 RDESGDNQLRLTEVYDELKSIEADAAEP------------------RARRIL------AG 190
+ N TE+ L I+ R I A
Sbjct: 443 SSKLNSNF-YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 191 LGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
L S + +M +KT LVV HD ++ + +I +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
Score = 38.8 bits (91), Expect = 0.005
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
E+ + G G+VGPNG GKTT ++ +A
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 138
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 127 bits (322), Expect = 2e-31
Identities = 85/526 (16%), Positives = 158/526 (30%), Gaps = 130/526 (24%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-------TR 108
N + + + G+ GLVG NG GK+T L+ +A R
Sbjct: 74 NLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 109 ALAIPSSIDLL----------YCEQEVEASDDSAVNI-----VLSADKNRVKLLKECSKL 153
P +++ Y + +E + + + A K V+ + E KL
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 154 ERDESGDNQLRLTEVYDELKSIE----------------------ADAAEPRARRILAGL 191
++ + + L+ +E + E
Sbjct: 194 RMEK---SPEDVKRYIKILQ-LENVLKRDIEKLSGGELQRFAIGMSCVQEAD-------- 241
Query: 192 GFTTIYI---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMK 237
+Y+ PSS +I+R+ K ++ V HD S L+ + + +
Sbjct: 242 ----VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
Query: 238 KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQA 297
Y G TL + +E + ++
Sbjct: 298 PSVY--GVVTLPASV-----REGINIFLDGHIPAENLRF--------------------R 330
Query: 298 RKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 357
+ +Q D ++L + G +L
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPS-----------------LKKTQGDFVLNVEEG 373
Query: 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417
+ ++G NG GK+T + LL G L P++G+ P+L + Q T
Sbjct: 374 EFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD--IPKLNVSMKPQKIA--PKFPGT 429
Query: 418 PCEYLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474
+ K + + Q + + + LSGG+ RVA+ DI
Sbjct: 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-QHLSGGELQRVAIVLALGIPADI 488
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRET 516
++DEP+ LD E ++ I+ + +V HD +
Sbjct: 489 YLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
Score = 36.5 bits (85), Expect = 0.022
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 205 EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMK--KLFYYKGNFTLFKKM 252
+ KKT +V HD + +I + K + + +L
Sbjct: 512 RFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 122 bits (309), Expect = 6e-30
Identities = 68/342 (19%), Positives = 113/342 (33%), Gaps = 69/342 (20%)
Query: 196 IYI---PSS--------RVHEIMRTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242
+YI PSS + + +R K ++VV HD L+ + I + + Y
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY- 217
Query: 243 KGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQ 302
G + K A R + LK
Sbjct: 218 -GRVS---------------------------------KSYAARVGINNFLKGYLPAENM 243
Query: 303 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME 362
K DE K +L++ + + G L N
Sbjct: 244 KIRPDEIKFMLKEVSDLDLSKDLKTKMKWT---------KIIKKLGDFQLVVDNGEAKEG 294
Query: 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 422
+ ++GPNGIGK+TF +L GE+T ++G + + + Q D T +YL
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTP-EKQILSYKPQRI--FPNYDGTVQQYL 351
Query: 423 MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
S L + DLSGG+ ++ +A D+ +LD
Sbjct: 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNV-NDLSGGELQKLYIAATLAKEADLYVLD 410
Query: 479 EPTNNLDIESIDALAEAIKNYQ----GGVILVSHDERLIRET 516
+P++ LD+E +A+AIK ++ HD +
Sbjct: 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452
Score = 106 bits (267), Expect = 1e-24
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 31/197 (15%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESR---VALVGPNGIGKSTFLNLLKGELTPNKGE---- 392
+V Y FGL + ++G NG+GK+T L +L GE+ PN G+
Sbjct: 4 EVIHRYKVNGF----KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK 59
Query: 393 ------LRKSPRLRIGKFDQHSGEHLFP-------DDTPCEYLMKLFNL---PYEKSRRQ 436
L++ I + + + + ++L N ++ ++
Sbjct: 60 VGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK 119
Query: 437 LGMFGLPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
+ L + + LSGG R+ +A L D+ I D+P++ LD+ +A+
Sbjct: 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179
Query: 495 AIKNYQGG--VILVSHD 509
AI+ VI+V HD
Sbjct: 180 AIRELLKNKYVIVVDHD 196
Score = 51.6 bits (124), Expect = 5e-07
Identities = 40/222 (18%), Positives = 60/222 (27%), Gaps = 47/222 (21%)
Query: 45 KASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
K S D +K +L N + G G++GPNG GKTT R
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQL-VVDNGEAKEGEIIGILGPNGIGKTTFARI 313
Query: 105 IATRALAIPSS-------IDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDE 157
+ L Y Q + + D V L +D
Sbjct: 314 LV--GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYL-------------ENASKDA 358
Query: 158 SGDNQLRLTEVYDELKSIEADAAEPRA------RRI---LAGLGFTTIYI---PSS---- 201
+ EV L + +++ +Y+ PSS
Sbjct: 359 LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 202 ----RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
V + R K ++ HD S + I II
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Score = 35.8 bits (83), Expect = 0.042
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 75 FHNANLQIA-SGRRYGLVGPNGHGKTTLLRHIA 106
F L + G++G NG GKTT+L+ +A
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILA 46
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 116 bits (294), Expect = 2e-29
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 35/215 (16%)
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P ++ L + GK +L+K+++ + + L G NG GK+T LN+L
Sbjct: 12 GLVPRGSHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70
Query: 386 LTPNKGELR-------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM-------KL 425
G + ++ R IG E + + ++ +
Sbjct: 71 EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 426 FNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
+ ++ R + L + G+ + A I LS G+K RV +A + P +LILDEP
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 482 NNLDIES-------IDALAEAIKNYQGGVILVSHD 509
LD + +D+L+++ +I V+H
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLA--MIYVTHF 222
Score = 51.8 bits (125), Expect = 2e-07
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 39 TVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGK 98
+ SS + + I+++ +G + + QIA G ++ L G NG GK
Sbjct: 2 SSHHHHHHSSGLVPRGSHML-IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGK 60
Query: 99 TTLLRHIATRALAIPSS 115
TTLL + A +S
Sbjct: 61 TTLLNILN--AYEPATS 75
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 115 bits (291), Expect = 1e-27
Identities = 78/343 (22%), Positives = 124/343 (36%), Gaps = 75/343 (21%)
Query: 196 IYI---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241
Y PSS +R K++LVV HD + L+ + DIIH+
Sbjct: 179 FYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLS-DIIHV------- 230
Query: 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALK-EQARKR 300
+Y E + + SQ + LK E R R
Sbjct: 231 ----------VY-------------GEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR 267
Query: 301 VQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLD 360
+ + E +E RE +V + G LE +
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYP-----------------RLVKDYGSFRLEVEPGEIK 310
Query: 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 420
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE--WDLTVAYKPQYI--KADYEGTVYE 366
Query: 421 YLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
L K+ + + L G+ +LSGG+ RVA+A L + DI +L
Sbjct: 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIAATLLRDADIYLL 425
Query: 478 DEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRET 516
DEP+ LD+E A+ ++ + ++V HD +I
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468
Score = 97.7 bits (244), Expect = 1e-21
Identities = 49/194 (25%), Positives = 70/194 (36%), Gaps = 26/194 (13%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
D Y G + + V +VGPNG GKST + +L G+L PN S
Sbjct: 26 DCVHRY-GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 400 RIGKFD---------QHSGEHLFPD------DTPCEYLMKLFNLPYEKSRRQ------LG 438
I F + + P D + + +K+ +
Sbjct: 85 VIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
L + I+ LSGG+ RVA+A L N DEP++ LDI A AI
Sbjct: 145 ALELENVLER-EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 497 -KNYQGGVILVSHD 509
V++V HD
Sbjct: 204 LSEEGKSVLVVEHD 217
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + L +I G G+VGPNG GKTT ++ +A
Sbjct: 283 ERETLVTYPRLVKDYGSFRL-EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLA 333
Score = 37.3 bits (87), Expect = 0.012
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 205 EIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
+M +KT LVV HD ++ + ++ +
Sbjct: 446 HLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
Score = 32.3 bits (74), Expect = 0.50
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
L+ + G G+VGPNG GK+T ++ +A
Sbjct: 29 HRYGVNAFVLYRL--PVVKEGMVVGIVGPNGTGKSTAVKILA 68
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 110 bits (277), Expect = 1e-27
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-- 391
L + ++ F Y L +++NF L+ +A++G NG GKST L+LL G P +G
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLP----YEKSRRQLGM 439
E+ + IG Q P + + F P Y+ + + L
Sbjct: 63 EVYQ----SIGFVPQ---FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY 115
Query: 440 FGLPSYAHTIPIRDLSGGQKARV----ALAELTLNNPDILILDEPTNNLD----IESIDA 491
L A LSGGQ+ + A+A + +++LDEPT+ LD +
Sbjct: 116 LNLTHLAKR-EFTSLSGGQRQLILIARAIA----SECKLILLDEPTSALDLANQDIVLSL 170
Query: 492 LAEAIKNYQGGVILVSHD 509
L + ++ V+ +H
Sbjct: 171 LIDLAQSQNMTVVFTTHQ 188
Score = 52.2 bits (126), Expect = 1e-07
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ VEN LF N + G ++G NG GK+TLL +
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL 52
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 105 bits (265), Expect = 3e-26
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 18/175 (10%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 401
K +LE++ ++ + V GPNGIGK+T L + L P KGE+ + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSG 456
+ + + +YL L+ + K+ L + + +LS
Sbjct: 81 FFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK--KLGELSQ 136
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508
G RV LA L N +I +LD+P +D +S + ++I +G VI+ S
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
Score = 41.0 bits (97), Expect = 4e-04
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 60 IKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 117
+++ + S + + I G GPNG GKTTLL+ I+T P +
Sbjct: 11 LEIRDLS---VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGE 65
Query: 118 LLYCEQEVE 126
++Y +
Sbjct: 66 IIYNGVPIT 74
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 105 bits (264), Expect = 1e-25
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+L + ++ + Y G L+ +N + A++G NG+GKST G L P+ G +
Sbjct: 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 394 RKSPRLRIGKFDQHSGEHL------------FPDD-----TPCE---YLMKLFNLPYEKS 433
K +S + + PD+ + + + LP ++
Sbjct: 66 LFD-----NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
Query: 434 RRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
R++ L G+ LS GQK RVA+A + + P +LILDEPT LD +
Sbjct: 121 RKRVDNALKRTGIEHLKDKPTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 490 DALAEAIK--NYQGG--VILVSHD 509
+ + + + G +I+ +HD
Sbjct: 180 SEIMKLLVEMQKELGITIIIATHD 203
Score = 49.9 bits (120), Expect = 7e-07
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
+KVE + + + G N+ I G ++G NG GK+TL ++ + PSS +
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN--GILKPSSGRI 65
Query: 119 LYCEQEVEASDDSAVNI 135
L+ + ++ S + +
Sbjct: 66 LFDNKPIDYSRKGIMKL 82
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 99.7 bits (249), Expect = 9e-24
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 338 LHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L +V G + LE +N ++ E +V ++GPNG GK+T L + G L P G +
Sbjct: 4 LKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNIF 61
Query: 395 ------KSPRLRIGKFDQHSGEHLFP----DDTPCEYLMKLFNLPYEKSRRQLGMFGLP- 443
+ R I + D +L L + L L
Sbjct: 62 INGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV--YLYEELKGLDRDLFLEMLKALKLGE 119
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 503
LS GQ V + + P+I+ LDEP N+D ++ IK Y
Sbjct: 120 EILRRKL-YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
Query: 504 ILVSHD 509
ILV+H+
Sbjct: 179 ILVTHE 184
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+++N S N NL++ +G + ++GPNG GKTTLLR I+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAIS 51
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 98.8 bits (247), Expect = 2e-23
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 23/182 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSP-- 397
G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G + + P
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 398 -RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTI 449
R I + +G + + EYL + + + GL
Sbjct: 86 VRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD- 142
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILV 506
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K +++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 507 SH 508
SH
Sbjct: 203 SH 204
Score = 42.9 bits (102), Expect = 1e-04
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ V++ E+ + +I G +GL+GPNG GKTT LR I+T L PSS
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSS 69
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 96.1 bits (240), Expect = 2e-22
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 34/201 (16%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
V+ L DV L ++ + + LVGPNG GKST L + G +T KG
Sbjct: 2 SIVMQLQDV-----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGS 55
Query: 393 LR--------KSPR---LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---RQLG 438
++ S L Q P TP + + L ++ G
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQ---QTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALA-------ELTLNNPDILILDEPTNNLDI---ES 488
L LSGG+ RV LA +L+LDEP N+LD+ +
Sbjct: 113 ALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 171
Query: 489 IDALAEAIKNYQGGVILVSHD 509
+D + A+ +++ SHD
Sbjct: 172 LDKILSALSQQGLAIVMSSHD 192
Score = 48.3 bits (116), Expect = 2e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 67 LSAKGV---ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + V + ++ +G LVGPNG GK+TLL +A
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 95.0 bits (237), Expect = 4e-22
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 49/207 (23%)
Query: 338 LHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+ +V+ + G K LE V+ ++ + + G G GKST L ++ G + P G++
Sbjct: 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
Query: 394 R--------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------------NL--PY 430
R IG Q +P+D + F N
Sbjct: 65 LYDGERKKGYEIRRNIGIAFQ------YPED-------QFFAERVFDEVAFAVKNFYPDR 111
Query: 431 EKSRR---QLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + GL S+ +P LSGG+K RVA+A + ++ PDILILDEP LD
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 486 IESIDALAEAIKNYQGG---VILVSHD 509
E L ++ ++ VIL+SHD
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHD 197
Score = 45.3 bits (108), Expect = 2e-05
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 59 DIKVENFSLS-AKGVELFHNA----NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP 113
I+V N S +G L A +L I G + G G GK+TLL+ +A L P
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA--GLIEP 59
Query: 114 SS 115
+S
Sbjct: 60 TS 61
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 82.5 bits (205), Expect = 4e-18
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 41/215 (19%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNKGE 392
+L ++ G ++L + ++ + V+++G +G GKST L +L G L P +G+
Sbjct: 3 EILRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGK 60
Query: 393 L------------RKSPRLR---IG-KFDQHSGEHLFPDDTPCEYLMKLFNLP------- 429
+ ++ LR +G F H +L P+ T E ++ +P
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFH---YLIPELTALENVI----VPMLKMGKP 113
Query: 430 ----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
E+ L GL P +LSGG++ RVA+A N P +L DEPT NLD
Sbjct: 114 KKEAKERGEYLLSELGLGDKLSRKP-YELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 486 IESIDALAEAIK--NYQGG-VILVSHDERLIRETD 517
+ + + N G +++V+H+ L T
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTHERELAELTH 207
Score = 32.9 bits (76), Expect = 0.17
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++ EN +G E+ +L + G ++G +G GK+TLL +I
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLL-YI 49
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 82.5 bits (205), Expect = 5e-18
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 44/198 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELT 387
+L V F Y + +L ++F S +A GP+G GKST +LL GE+T
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 388 PNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGM 439
+ + ++ R +IG Q S + T E NL Y + + L
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDS--AIM-AGTIRE------NLTYGLEGDYTDEDLWQ 111
Query: 440 FGLPSYAHTIPIRD---------------LSGGQKARVALAELTLNNPDILILDEPTNNL 484
++A + + + +SGGQ+ R+A+A L NP IL+LDE T +L
Sbjct: 112 VLDLAFARSF-VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASL 170
Query: 485 DIES---I-DALAEAIKN 498
D ES + AL +K
Sbjct: 171 DSESESMVQKALDSLMKG 188
Score = 35.1 bits (82), Expect = 0.040
Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ + + ++ + + + GP+G GK+T+
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFS 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 82.0 bits (203), Expect = 2e-16
Identities = 61/235 (25%), Positives = 90/235 (38%), Gaps = 70/235 (29%)
Query: 332 PPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
P + G ++ F YP +L+ +N + VALVG +G GKST + L++
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 387 TPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
P G + + R IG Q LF T E N+
Sbjct: 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP--VLF-ATTIAE------NI------- 484
Query: 436 QLGMFGLP-------------SYAHTIPIRDL---------------SGGQKARVALAEL 467
+G + A+ I L SGGQK R+A+A
Sbjct: 485 ---RYGREDVTMDEIEKAVKEANAYDF-IMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540
Query: 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
+ NP IL+LDE T+ LD ES + A+ + G I+++H RL +R D
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH--RLSTVRNADV 593
Score = 77.4 bits (191), Expect = 7e-15
Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 50/233 (21%)
Query: 325 FPNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
+ P + G V F YP +L+ ++ + +ALVG +G GKST +
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 380 NLL-------KGELTPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428
LL G + + E++ + R ++G Q LF D + E N+
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP--ILF-DCSIAE------NI 1127
Query: 429 PYEKSRRQLGM--------------F--GLPS-YAHTIPIR--DLSGGQKARVALAELTL 469
Y + R + F LP Y + + LSGGQK R+A+A +
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
P IL+LDE T+ LD ES + EA+ + G I+++H RL I+ D
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH--RLSTIQNADL 1238
Score = 34.6 bits (80), Expect = 0.093
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 39 TVSQSSKASSKRSTVDDNSVDIKVEN--FS-LSAKGVELFHNANLQIASGRRYGLVGPNG 95
+ S++ + +++ F+ + + + +L++ G+ LVG +G
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 96 HGKTTLL 102
GK+T++
Sbjct: 1070 CGKSTVV 1076
Score = 33.9 bits (78), Expect = 0.20
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 39 TVSQSSKASSKRSTVDDNSVDIKVEN--FS-LSAKGVELFHNANLQIASGRRYGLVGPNG 95
S D+ +++ +N FS S K V++ NL++ SG+ LVG +G
Sbjct: 367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426
Query: 96 HGKTTLL 102
GK+T +
Sbjct: 427 CGKSTTV 433
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 80.3 bits (199), Expect = 4e-16
Identities = 66/233 (28%), Positives = 91/233 (39%), Gaps = 68/233 (29%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVA 366
+L+ +E + G +VTF YPG +V L +N + VA
Sbjct: 320 AILDSEQEK------DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 373
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLFPD 415
LVG +G GKST +L+ ++G + S R ++ Q+ HLF +
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV--HLF-N 430
Query: 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPS-----------YAH-----------TIPIRD 453
DT N+ Y S YA TI I +
Sbjct: 431 DTVAN------NIAY-------ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI-IGE 476
Query: 454 ----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 498
LSGGQ+ R+A+A L + ILILDE T+ LD ES I AL E KN
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
Score = 36.4 bits (85), Expect = 0.025
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
D++ N F+ + V N NL+I +G+ LVG +G GK+T+
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTI 385
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 79.2 bits (196), Expect = 9e-16
Identities = 71/226 (31%), Positives = 93/226 (41%), Gaps = 54/226 (23%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGG-KVLLEKVNFGLDMESRVA 366
L++ E N Y V G + DVTF Y G K L V+F + VA
Sbjct: 320 GLMDLETER------DNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLFPD 415
LVG +G GKST NL + G + + R Q+ HLF +
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV--HLF-N 430
Query: 416 DTPCEYLMKLFNLPY----EKSRRQLGM---------F--GLPSYAHTIPIRD----LSG 456
DT N+ Y E +R Q+ F +P T+ I + LSG
Sbjct: 431 DTIAN------NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV-IGENGTSLSG 483
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 498
GQ+ RVA+A L + +LILDE T+ LD ES I AL E KN
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Score = 37.6 bits (88), Expect = 0.010
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 42 QSSKASSKR--------STVDDNSV-------DIKVEN--FSLSAKGVELFHNANLQIAS 84
Q A+ + + D+ ++ V++ F+ K + + I
Sbjct: 309 QRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQ 368
Query: 85 GRRYGLVGPNGHGKTTL 101
G+ LVG +G GK+T+
Sbjct: 369 GKTVALVGRSGSGKSTI 385
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 76.5 bits (189), Expect = 2e-15
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGE 392
+V F Y G+ L+ V+F + +ALVGP+G GKST L LL G + + +
Sbjct: 58 NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117
Query: 393 LR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-----------EKSRR-Q 436
+ S R IG Q + LF +DT + N+ Y ++
Sbjct: 118 ISQVTQASLRSHIGVVPQDT--VLF-NDTIAD------NIRYGRVTAGNDEVEAAAQAAG 168
Query: 437 LGMF--GLPS-YAHTIPIRDL--SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ P Y + R L SGG+K RVA+A L P I++LDE T+ LD + A
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 492 LAEAIKNYQGG--VILVSHDERL--IRETD 517
+ ++ I+V+H RL + D
Sbjct: 229 IQASLAKVCANRTTIVVAH--RLSTVVNAD 256
Score = 36.8 bits (86), Expect = 0.013
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 59 DIKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN S A G E + + + G+ LVGP+G GK+T+LR +
Sbjct: 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 74.9 bits (185), Expect = 3e-15
Identities = 42/220 (19%), Positives = 74/220 (33%), Gaps = 45/220 (20%)
Query: 332 PPPVLGLHDVT--FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 389
+L ++ FG L+ V+ ++ ++GPNG GKST +N++ G L +
Sbjct: 4 TMEILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 390 KGELR--------KSPRLRIGK-----FDQHSGEHLFPDDT-----------PCEYLMKL 425
+G + K P F Q + T P E +
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTF-QTP--QPLKEMTVLENLLIGEICPGESPLNS 117
Query: 426 FNLP---------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476
EK+ + L L +LSGGQ V + + NP +++
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIV 176
Query: 477 LDEPT---NNLDIESIDALAEAIKNYQGGVILVSHDERLI 513
+DEP I +K +++ H ++
Sbjct: 177 MDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
Score = 40.2 bits (95), Expect = 0.001
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
++ EN + ++ + G ++GPNG GK+TL
Sbjct: 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTL 49
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 73.0 bits (180), Expect = 8e-15
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 52/224 (23%)
Query: 335 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNK 390
++ L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ G L P +
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59
Query: 391 GE------------------LRKSPRLRIG----KFDQHSGEHLFPDDT-------PCEY 421
GE +R R +IG +F +L P T P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIR---RDKIGFVFQQF------NLIPLLTALENVELPLIF 110
Query: 422 LMKLFNLPYEKSRR---QLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
+ E+ +R L M L +A+ P LSGGQ+ RVA+A NNP I++
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILA 169
Query: 478 DEPTNNLDIESIDALAEAIK--NYQGG--VILVSHDERLIRETD 517
D+PT LD ++ + + + +K N + G V++V+HD + R +
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
Score = 28.7 bits (65), Expect = 4.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+K++N + + + + N NL I G ++GP+G GK+T+L
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML 48
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 70.6 bits (174), Expect = 8e-14
Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 80/232 (34%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
++ F Y P V+L+ +N + + +VG +G GKST L+
Sbjct: 10 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------------- 55
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS-RRQLGM---------------- 439
R + +G+ L D + L + RRQ+G+
Sbjct: 56 QRF----YIPENGQVLI-DGHD----LALADP---NWLRRQVGVVLQDNVLLNRSIIDNI 103
Query: 440 -FGLP-------------SYAHTIPIRDLSGG---------------QKARVALAELTLN 470
P + AH I +L G Q+ R+A+A +N
Sbjct: 104 SLANPGMSVEKVIYAAKLAGAHDF-ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 471 NPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
NP ILI DE T+ LD ES + + G VI+++H RL ++ D
Sbjct: 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH--RLSTVKNADR 212
Score = 41.3 bits (98), Expect = 4e-04
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
DI N F + N NL I G G+VG +G GK+TL
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 69.5 bits (171), Expect = 2e-13
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLR-IGKFDQHSGEHLFPD 415
L+GP G GKS FL L+ G + P++GE+R P R IG Q LFP
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPH 84
Query: 416 DTPCEYLMKLF-NLPY-----------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+ ++ N+ Y + R G+ P LSGG++ RVA
Sbjct: 85 -------LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQRVA 136
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 509
LA + P +L+LDEP + +D+++ L E ++ Q + V+HD
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Score = 36.0 bits (84), Expect = 0.023
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 76 HNANLQIASGRRY-GLVGPNGHGKTTLLRHIA 106
N+ GR Y L+GP G GK+ L IA
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIA 45
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 70.0 bits (172), Expect = 4e-13
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 23/166 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
V YPGG + V+ + V L+GP+G GK+T L L+ G P KG++
Sbjct: 17 FVGVEKIYPGGARSVRGVS--FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 394 ------RKSPRLR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGM 439
P+ R +G Q+ LF T + + ++ +P + R L
Sbjct: 75 GGKRVTDLPPQKRNVGLVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRF 132
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L SYA+ P +LSGGQ+ RVALA P +L+ DEP +D
Sbjct: 133 MRLESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Score = 42.6 bits (101), Expect = 2e-04
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 57 SVDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
S+ I+ G + QI G GL+GP+G GKTT+LR IA
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 67.2 bits (165), Expect = 1e-12
Identities = 53/160 (33%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KG-------ELTPNKGELRKSP 397
L+ +N + V ++GP+G GKSTFL NLL +G L L K
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV- 98
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSYAHTI 449
R +G Q +LFP T + K+ P K+ L GL AH
Sbjct: 99 REEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
P LSGGQ RVA+A P I++ DEPT+ LD E +
Sbjct: 157 PDS-LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
Score = 33.3 bits (77), Expect = 0.16
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I V S +E+ N+ I G ++GP+G GK+T LR
Sbjct: 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLR 68
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 67.2 bits (165), Expect = 3e-12
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
L + ++ + +L ++ LD + ++G +G GK+T L L G P+ GE+
Sbjct: 3 AALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 394 RKSPRLRIGKFDQHSGEH------------LFPDDTPCE---YLMKLFNLPYEKSRRQ-- 436
S + I + + LFP T Y + + R++
Sbjct: 62 SLSGK-TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
L + G+ A P +LSGGQ+ R ALA +P++++LDEP + LD + + E
Sbjct: 121 AMLELTGISELAGRYP-HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 495 AIKNYQ--GGV--ILVSHD 509
+ G + VSHD
Sbjct: 180 DMIAALRANGKSAVFVSHD 198
Score = 40.2 bits (95), Expect = 0.001
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ +L + G ++G +G GKTTLLR +A
Sbjct: 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLA 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 63.0 bits (154), Expect = 2e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 57/213 (26%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ +VT + GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI 449
RI Q S ++M +F + Y++ R Y I
Sbjct: 69 G--RISFCSQFS------------WIMPGTIKENIIFGVSYDEYR----------YRSVI 104
Query: 450 ------------PIRD----------LSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+D LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 105 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 488 SIDAL-AEAIKNYQGG--VILVSHDERLIRETD 517
+ + + ILV+ +++ D
Sbjct: 165 TEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 197
Score = 35.2 bits (82), Expect = 0.038
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
V ++ G + + N +I G+ + G G GKT+LL
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL 51
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 64.3 bits (157), Expect = 3e-11
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 316 PREYIVKFRFPNPPYLPPPVLGLHDV--TFGYPGGKVL-LEKVNFGLDMESRVALVGPNG 372
+ + ++ L ++ F + L V+ + ++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 373 IGKSTF---LNLL----KGELTPN--------KGELRKSPRLRIGKFDQHSGEHLFPDDT 417
GKST +NLL +G + + + EL K+ R +IG QH +L T
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA-RRQIGMIFQHF--NLLSSRT 121
Query: 418 PCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470
++L N P ++ +R+ L + GL + P +LSGGQK RVA+A +
Sbjct: 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALAS 180
Query: 471 NPDILILDEPTNNLDIE---SIDALAEAIKNYQGG--VILVSHDERLIRE 515
NP +L+ D+ T+ LD SI L + I N + G ++L++H+ +++
Sbjct: 181 NPKVLLCDQATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKR 229
Score = 41.5 bits (98), Expect = 6e-04
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 42 QSSKASSKRSTVDDNSVDIKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHG 97
SS DD + IK+ N F + ++ +N +L + +G+ YG++G +G G
Sbjct: 8 HHHHHSSGHIDDDDKHM-IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAG 66
Query: 98 KTTLLRHI 105
K+TL+R +
Sbjct: 67 KSTLIRCV 74
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 63.4 bits (155), Expect = 4e-11
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 35/175 (20%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ +V+ + GKV+ N +++E+ ++GP+G GK+TF+ ++ G P+ GEL
Sbjct: 6 VKNVSKVFKKGKVVALD-NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY- 63
Query: 396 SPRLRIGKFDQHSGEH------------------LFPDDTPCE---YLMKLFNLP----Y 430
S L+P+ T E + + +
Sbjct: 64 -----FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
++ + + + P R+LSG Q+ RVALA + +P +L+LDEP +NLD
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Score = 43.8 bits (104), Expect = 9e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
N N+ I +G R+G++GP+G GKTT +R IA
Sbjct: 22 DNVNINIENGERFGILGPSGAGKTTFMRIIA 52
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 62.4 bits (151), Expect = 1e-10
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALA 493
+ P+ LSGG++ + LA +LILDEPT LD E L
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 494 EAIKNYQGG---VILVSHDERLIRETD 517
++ Y VILVSHDE L D
Sbjct: 295 TIMERYLKKIPQVILVSHDEELKDAAD 321
Score = 36.6 bits (84), Expect = 0.016
Identities = 32/224 (14%), Positives = 82/224 (36%), Gaps = 6/224 (2%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-VNIVLSADKNRVKLLK 148
++G NG GK++LL I L P I + ++ + ++++ D + ++
Sbjct: 28 IIGQNGSGKSSLLDAI-LVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRI-- 84
Query: 149 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMR 208
L+ SG+ V +E K + +++ + + + + +
Sbjct: 85 TRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQID 144
Query: 209 TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQE 268
++ + ++ + D KKL KG +++ + +K E
Sbjct: 145 AILESD--EAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAAL 202
Query: 269 KQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 312
+I E+ S+ ++ + E+ + R+ + + + L
Sbjct: 203 SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPL 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 60.6 bits (148), Expect = 2e-10
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 30/153 (19%)
Query: 365 VALVGPNGIGKSTFL---NLL----KGELT----------PNKGELRKSPRLRIGKFDQH 407
++++G +G GKSTFL N L +G + G+L+ + + ++
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94
Query: 408 SGE-----HLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDL 454
+L+ T E +M ++ L E++ + L G+ A L
Sbjct: 95 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
SGGQ+ RV++A PD+L+ DEPT+ LD E
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Score = 34.1 bits (79), Expect = 0.093
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ V + G E+ +LQ +G ++G +G GK+T LR I L PS ++
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAII 64
Query: 120 YCEQEVEASDDSAVNIVLSADKN 142
Q + D + ++
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQ 87
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 61.4 bits (150), Expect = 2e-10
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 34/160 (21%)
Query: 348 GKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP 397
L+ ++ L +ES ++GP G GK+ FL L+ G P+ G + SP
Sbjct: 12 KNFSLDNLS--LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP 69
Query: 398 RLR-IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----------EKSRRQLGMFGLPSY 445
I Q+ LFP M + NL + ++ +
Sbjct: 70 EKHDIAFVYQNYS--LFPH-------MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
P LSGG++ RVALA + NP IL+LDEP + LD
Sbjct: 121 LDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 37.9 bits (89), Expect = 0.006
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
N +L++ SG + ++GP G GKT L IA
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIA 47
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 58.3 bits (142), Expect = 1e-09
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 54/173 (31%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ + TF + L + F + + VA+VG G GKS+ L+ L E+ +G +
Sbjct: 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI 449
+ Q + ++ LF E+ Y I
Sbjct: 66 G--SVAYVPQQA------------WIQNDSLRENILFGCQLEEPY----------YRSVI 101
Query: 450 ------------PIRD----------LSGGQKARVALAELTLNNPDILILDEP 480
P D LSGGQK RV+LA +N DI + D+P
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154
Score = 35.2 bits (82), Expect = 0.032
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
NS+ ++ F+ + + I G +VG G GK++LL
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL 48
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 55.9 bits (135), Expect = 1e-09
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 450 PIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ + LA +LILDEPT LD E L ++ Y
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 503 --VILVSHDERLIRETD 517
VILVSHDE L D
Sbjct: 114 PQVILVSHDEELKDAAD 130
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 57.2 bits (139), Expect = 3e-09
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 509
LSGGQ+ VALA + P +LILD T+ LD + L E+ + V+L++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 510 ERL--IRETD 517
+L
Sbjct: 216 -QLSLAERAH 224
Score = 47.1 bits (113), Expect = 6e-06
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 326 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
+ P + G DV+F YP +L+ + F L ALVGPNG GKST
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 381 LL 382
LL
Sbjct: 64 LL 65
Score = 33.7 bits (78), Expect = 0.12
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
+ V++ + G+ LVGPNG GK+T+
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 58.7 bits (143), Expect = 3e-09
Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 81/224 (36%)
Query: 311 ELLEKPREYIVKFRFPNP-PYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGLDMESRVA 366
E+L+ E +P V G +V F Y K +L+ + F + +VA
Sbjct: 332 EILDLEEE------KDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVA 385
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426
LVGP G GK+T +NLL ++G++ D D +K
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQIL---------VDGI--------DI---RKIKRS 425
Query: 427 NLPYEKSRRQLGM-----------------FGLP-------------SYAHTIPIRDLSG 456
+L R +G+ +G P +++ I+ L
Sbjct: 426 SL-----RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF-IKHLPE 479
Query: 457 G---------------QKARVALAELTLNNPDILILDEPTNNLD 485
G Q+ +A+ L NP ILILDE T+N+D
Sbjct: 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Score = 36.4 bits (85), Expect = 0.029
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
K + + I G++ LVGP G GKTT+
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTI 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 57.4 bits (139), Expect = 4e-09
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 68/253 (26%)
Query: 299 KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFG 358
+ V ++ EL EK ++ N + G +L+ +NF
Sbjct: 8 ENVTAFWEEGFGELFEKAKQ-------NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
++ +A+ G G GK++ L ++ GEL P++G+++ HSG F
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------HSGRISFCSQNS 108
Query: 419 CEYLMKLFN---------LPYEKSRRQLGMFGLPSYAHTI------------PIRDL--- 454
+ + Y++ R Y I +D
Sbjct: 109 W-----IMPGTIKENIIGVSYDEYR----------YRSVIKACQLEEDISKFAEKDNIVL 153
Query: 455 -------SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGG--VI 504
SGGQ+AR++LA + D+ +LD P LD+ + + + I
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 505 LVSHDERLIRETD 517
LV+ +++ D
Sbjct: 214 LVTSKMEHLKKAD 226
Score = 35.4 bits (82), Expect = 0.037
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 32 TDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLV 91
T E KA + ++ D + + S G + + N +I G+ +
Sbjct: 11 TAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVA 70
Query: 92 GPNGHGKTTLL 102
G G GKT+LL
Sbjct: 71 GSTGAGKTSLL 81
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 56.4 bits (137), Expect = 4e-09
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGG++ R+A+A L +P I+I DE T++LD ++ +A+++ + +I+++H R
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--R 213
Query: 512 L--IRETDC 518
L I +
Sbjct: 214 LSTISSAES 222
Score = 47.9 bits (115), Expect = 3e-06
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 340 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
DV F YP L+ +NF + + ALVG G GKST LL
Sbjct: 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Score = 39.1 bits (92), Expect = 0.002
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 45 KASSKRSTVDDNSVDIKVEN--FS-LSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
++ S S V+I+ + FS + N I SG LVG G GK+T+
Sbjct: 3 ESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI 62
Query: 102 LRHI 105
+ +
Sbjct: 63 AKLL 66
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 57.6 bits (140), Expect = 6e-09
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQK R+A+A L NP IL+LDE T+ LD E+ + EA+ G V++++H R
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH--R 541
Query: 512 L--IRETDC 518
L I+ +
Sbjct: 542 LSTIKNANM 550
Score = 50.7 bits (122), Expect = 9e-07
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 325 FPNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
G +V F YP + + + + S ALVGP+G GKST L
Sbjct: 328 NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387
Query: 380 NLL 382
+LL
Sbjct: 388 SLL 390
Score = 36.4 bits (85), Expect = 0.022
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTT----LLR 103
+ V +F + +L I SG LVGP+G GK+T LLR
Sbjct: 353 ARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 79/507 (15%), Positives = 153/507 (30%), Gaps = 126/507 (24%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTL----LRHIATRALAIPSSI---DLLYCEQEVEAS 128
A L++ + + G G GKT + + + I +L C S
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCN-----S 194
Query: 129 DDSAVNIVLSADKNRVKLLKECSKLERDESGDN-QLRLTEVYDELKSIEADAAEPRARRI 187
++ + ++ ++ + + R + N +LR+ + EL+ + +
Sbjct: 195 PETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 188 LAGLGFTTIYIPSSRVHEIMRTWK------KTLLVVSHDQS---FLNNICTDIIHL-DMK 237
L + + W K L+ + + FL+ T I L
Sbjct: 250 LLN-----VQNA--------KAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 238 KLFYYKGNFTLFKKMYVQKRKELTKEYE----LQEKQIREMKSQGMSKEKAERQHSHKAL 293
+L K + ++L +E + I E G++ + + L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 294 KEQARKRVQKDDDDEPKELLEKPREYIVKFR-FPNPPYLPPPVLGL--HDVTFGYPG--- 347
+ + EP E R+ + FP ++P +L L DV
Sbjct: 356 TTIIESSL---NVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 348 ----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--PRLRI 401
L+EK ES +++ + L N+ L +S I
Sbjct: 409 NKLHKYSLVEKQPK----ESTISIPS---------IYLELKVKLENEYALHRSIVDHYNI 455
Query: 402 GK---------------FDQHSGEHLF---PDDTPCEYLMKLFNLPYEKSR-RQLGMFGL 442
K F H G HL + + M + + + + R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS---- 511
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 502
++ + I + L +L P I ++P + L AI ++
Sbjct: 512 TAWNASGSILNT---------LQQLKFYKPYI-CDNDPKY-------ERLVNAILDF--- 551
Query: 503 VILVSHDERLIRETDCEL--WALEKKN 527
L +E LI +L AL ++
Sbjct: 552 --LPKIEENLICSKYTDLLRIALMAED 576
Score = 56.8 bits (136), Expect = 1e-08
Identities = 60/392 (15%), Positives = 113/392 (28%), Gaps = 92/392 (23%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261
E +K L V + +F++N C D+ DM K K + + ++
Sbjct: 11 TGEHQYQYKDILSV--FEDAFVDNFDCKDV--QDMPKSILSKEEI----DHIIMSKDAVS 62
Query: 262 KEYELQEKQIREMKSQGMSKEKAER------QHSHKALKEQARKRVQKDDDDEPKELLEK 315
L + S+ +E ++ + ++K L + ++ + ++
Sbjct: 63 GTLRL----FWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 316 PREYIVKFRFPNPPYL---PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNG 372
R Y F Y P L L + LLE L V + G G
Sbjct: 117 DRLYNDNQVFA--KYNVSRLQPYLKLR---------QALLE-----LRPAKNVLIDGVLG 160
Query: 373 IGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428
GK+ + ++ + K L + ++P L L L
Sbjct: 161 SGKTW----VALDVCLSYKVQCKMDFKIFWLNLKN-----------CNSPETVLEMLQKL 205
Query: 429 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
Y + ++ I +R S + R L N +L+L N +
Sbjct: 206 LY---QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNA 261
Query: 489 ID------------ALAEAIKNYQGGVILVSHDERLIRETDC-ELWALEKKNIRKFNGDF 535
+ + + + I + H + + L + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRP 315
Query: 536 DDYREKLLTSLGEAMVYNP---SVAAEQDDDE 564
D E + NP S+ AE D
Sbjct: 316 QDLPR-------EVLTTNPRRLSIIAESIRDG 340
Score = 36.8 bits (84), Expect = 0.023
Identities = 54/354 (15%), Positives = 110/354 (31%), Gaps = 103/354 (29%)
Query: 17 SKYQQELSALSGGQGT-----DELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKG 71
++++Q LS T T + K +D + ++
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-------YLDCRPQDLPREVLT 324
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL--AIPSSIDLLYCEQEVEASD 129
+ IA R +G +H+ L I SS+++L + + D
Sbjct: 325 TNPRRLS--IIAESIR------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 130 DSA-----VNI---VLS-----ADKNRV-KLLKECSK---LERDESGDNQLRLTEVYDEL 172
+ +I +LS K+ V ++ + K +E+ ++ + + +Y EL
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLEL 435
Query: 173 KSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKK-TLLVVSHDQSFLNNICTDI 231
K + R I+ Y I +T+ L+ DQ F ++I
Sbjct: 436 KVKLENEYALH-RSIVDH------Y-------NIPKTFDSDDLIPPYLDQYFYSHIGH-- 479
Query: 232 IHLDMKKLFYYKGNFTLFKKMYV------QK------------------------RKELT 261
HL + TLF+ +++ QK + +
Sbjct: 480 -HLKNIEH---PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 262 KEYELQEKQIREMK------SQGMSKEKAER------QHSHKALKEQARKRVQK 303
E+ + + + + K +A+ E+A K+VQ+
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 55.7 bits (135), Expect = 3e-08
Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 498
LSGGQK R+++A + LNNP ILILDE T+ LD+ES I +AL K+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526
Score = 51.0 bits (123), Expect = 7e-07
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 307 DEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKV-LLEKVNFGLDME 362
DE ++ G + V+F Y + +L+ +N ++
Sbjct: 319 DEDYDIKNGVG-----------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 363 SRVALVGPNGIGKSTFLNLL 382
VA VG +G GKST +NL+
Sbjct: 368 ETVAFVGMSGGGKSTLINLI 387
Score = 38.3 bits (90), Expect = 0.006
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
I +++ F + + + NL I G VG +G GK+TL
Sbjct: 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 53.3 bits (128), Expect = 1e-07
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE-------LTLNNP 472
E + + + + + I +LSGG++ VAL+ L N
Sbjct: 247 EAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRV 306
Query: 473 DILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL 512
+ +ILDEPT LD LAE + + +I+++H L
Sbjct: 307 ECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 52.6 bits (127), Expect = 1e-07
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 24/166 (14%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L ++ + L N L ++ +AL+GP+G GKST L + G P G++
Sbjct: 6 LENIVKKFGNFTAL---NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 395 -------KSPRLR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQLG----M 439
P+ R +G Q+ L+P T + + ++L P E+ +++ M
Sbjct: 63 DEKDVTELPPKDRNVGLVFQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM 120
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + P LSGGQ+ RVA+A + P++L+LDEP +NLD
Sbjct: 121 LHIDKLLNRYP-WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+N NL+I G L+GP+G GK+TLL IA
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA 50
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 91/562 (16%), Positives = 156/562 (27%), Gaps = 211/562 (37%)
Query: 80 LQIASGR-RYG-LVGPNGHGKTTLLR-------HIATRALAI---PSS-IDLL-----YC 121
L ++ G + LV + L+ T A P++ +L+ Y
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 122 EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EADA 179
VE S + VL+ L E E L +++ + E D
Sbjct: 69 SSLVEPSKVGQFDQVLNL------CLTE---FENC-----YLEGNDIHALAAKLLQENDT 114
Query: 180 AEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+ + ++ YI + + R + K + + + L
Sbjct: 115 TLVKTKELI------KNYITARIM--AKRPFDK-----KSNSALFRAVGEGNAQL----- 156
Query: 240 FYYKGNFTLF-----KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALK 294
+F Y +EL Y+ + ++ S + L
Sbjct: 157 ------VAIFGGQGNTDDYF---EELRDLYQTYHVLVGDLIKF-----------SAETLS 196
Query: 295 EQARKRVQKDDDDEPK---------ELLEKPREYIVKFRFPNPPYL--PP---PVLGL-- 338
E R D K E LE P P+ YL P P++G+
Sbjct: 197 ELIR-----TTLDAEKVFTQGLNILEWLENPS------NTPDKDYLLSIPISCPLIGVIQ 245
Query: 339 --HDVTFGYPGGKVLLEKVNFGLDM-ESRVALVGPNGIGKS--------------TFLNL 381
H V K+L G E R L G G + +F
Sbjct: 246 LAHYVVT----AKLL------GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 382 LK---------G----ELTPNK-------------GELRKSPRL------------RIGK 403
++ G E PN E SP L + K
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 404 FDQH--SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS--YAHTIPIRDL---SG 456
+ H +G+ + + L N + L + G P Y + +R SG
Sbjct: 356 TNSHLPAGKQVE---------ISLVN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 457 GQKARVALAE---------LTLNNP----------DILILDEPTNNLDIESIDALAEAIK 497
++R+ +E L + +P D++ D NN+ + D + +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVY 460
Query: 498 NYQGGVILVSHDERLIRE-TDC 518
+ G L + DC
Sbjct: 461 DTFDGSDLRVLSGSISERIVDC 482
Score = 50.0 bits (119), Expect = 2e-06
Identities = 57/316 (18%), Positives = 103/316 (32%), Gaps = 93/316 (29%)
Query: 276 SQ--GMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 333
SQ GM + + + + + +A D+ K+ IV NP L
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRA--------DNHFKDTYGFSILDIVI---NNPVNL-- 1672
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+ FG GK + E N+ + E+ V GK + K E+ +
Sbjct: 1673 ------TIHFGGEKGKRIRE--NYSAMIFETIVD-------GKLKTEKIFK-EINEHSTS 1716
Query: 393 LR-KSPR--LRIGKFDQHSGEHLFPDDTPC---------EYLMKLFNLPYEK-----SRR 435
+S + L +F Q P E L +P + S
Sbjct: 1717 YTFRSEKGLLSATQFTQ-----------PALTLMEKAAFEDLKSKGLIPADATFAGHS-- 1763
Query: 436 QLGMFG-LPSYAHTIPIRDLSG-----GQKARVALA--ELTLNNPDILILDEPTN---NL 484
LG + L S A + I L G +VA+ EL +N ++ ++ P +
Sbjct: 1764 -LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASF 1821
Query: 485 DIESIDALAEAIK----------NY--QGGVILVSHDERLIRETDCE-LWALEKKNIR-- 529
E++ + E + NY + + + D R + +T L ++ + I
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-DTVTNVLNFIKLQKIDII 1880
Query: 530 KFNGDF--DDYREKLL 543
+ ++ L
Sbjct: 1881 ELQKSLSLEEVEGHLF 1896
Score = 39.6 bits (92), Expect = 0.003
Identities = 87/450 (19%), Positives = 131/450 (29%), Gaps = 175/450 (38%)
Query: 22 ELSALSGGQGT-----DELEN-FTVSQS------SKASSK-----RSTVDDNSV-----D 59
+L A+ GGQG +EL + + ++ R+T+D V +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 60 IK--VEN--------------FSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
I +EN S GV +L H G G + G T
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 103 RHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQ 162
+ + T A+AI + S +S V A + +L G
Sbjct: 275 QGLVT-AVAIAET-----------DSWESFFVSVRKA----ITVLFFI--------G--- 307
Query: 163 LRLTEVYDELK---SIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVS- 218
+R E Y SI D+ E G +PS M L +S
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLE-------NNEG-----VPSP-----M-------LSISN 343
Query: 219 ----HDQSFLNNICTDIIHLDMKKLFYYKGNFTLF--KKMYVQKRKELT---KE-YELQE 268
Q ++N + HL K +L K V ++ + Y L
Sbjct: 344 LTQEQVQDYVNKTNS---HLPAGKQVE----ISLVNGAKNLV-----VSGPPQSLYGLN- 390
Query: 269 KQIREMK-SQGMSKEKA---ERQ--------------HSHKALKEQARKRVQKDDDDEPK 310
+R+ K G+ + + ER+ HSH L A + KD
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNV 448
Query: 311 EL----LEKP----------REY-------IVK--FRFP----NPPYLPPPVLGLHDVTF 343
++ P R IV R P H + F
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA----THILDF 504
Query: 344 GYPGGK----VLLEKVNFGLDMESRVALVG 369
G PGG VL + G + RV + G
Sbjct: 505 G-PGGASGLGVLTHRNKDGTGV--RVIVAG 531
Score = 34.6 bits (79), Expect = 0.096
Identities = 55/340 (16%), Positives = 106/340 (31%), Gaps = 100/340 (29%)
Query: 290 HKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGL----------- 338
+K L E D+ P EL+ K Y+ P+ VL L
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 339 ----HDVTFGYPG--GKVLLEK-------------VNFGLDMESRVALVGPNGIGKSTFL 379
H + L++ D +S AL G G + +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 380 NLLKGELTPNK--GELR---KSPRLRIGKFDQHSGEHLF--------------------- 413
+ G+ + ELR ++ + +G + S E L
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 414 ----PDDTP-CEYLMK-LFNLP---------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 458
P +TP +YL+ + P Y + + LG P + ++ +G
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF--TPGELRSY-LKGATGHS 274
Query: 459 KARV-ALA--------ELTLNNPDIL-IL-------DEPTNNLDIESIDALAEAIKNYQG 501
+ V A+A ++ + +L E N + L ++++N +G
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLENNEG 333
Query: 502 ------GVILVSHD--ERLIRETDCELWALEKKNIRKFNG 533
+ ++ + + + +T+ L A ++ I NG
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 50.9 bits (123), Expect = 3e-07
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 45/179 (25%)
Query: 333 PPVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
VL + + Y G + ++ ++ + V L+G NG GK+T L+ + G + KG
Sbjct: 4 DIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 392 ELRKSPRLRIGKFDQHS-----------GEHLFPDDTPCEYLM----------------- 423
++ + + I H G +FP+ T E LM
Sbjct: 62 KIIFNGQ-DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE 120
Query: 424 KLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
+F+L P K R + T LSGG++ +A+ ++ P +L++DEP+
Sbjct: 121 WIFSLFPRLKERLK-------QLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPS 167
Score = 39.0 bits (92), Expect = 0.002
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+V++ + + +L++ G+ L+G NG GKTT L IA
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 51.4 bits (123), Expect = 4e-07
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P R LSGG++A + +LAE+ D +DE ++LD E+ + +A +K +
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN 335
Query: 503 --VILVSHDERL 512
++ ++HD
Sbjct: 336 KVIVFITHDREF 347
Score = 30.6 bits (69), Expect = 1.5
Identities = 32/254 (12%), Positives = 71/254 (27%), Gaps = 36/254 (14%)
Query: 88 YGLVGPNGHGKTTLLRHI-------ATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
+ GPNG GK++L I R ++ + +
Sbjct: 26 TVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNRNAVDGTAR------LVFQFERG 79
Query: 141 KNRVKLLKECSKLERDESGDNQLRLTEVY-DELKSIEADAAEPRARRILAGLGFT----- 194
R ++++E + L+R + +L+E+ + K+ A + + LG
Sbjct: 80 GKRYEIIREINALQRKHNA----KLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFI 135
Query: 195 -TIYIPSSRVHEIM-------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246
T+++P + +++ + L + + + ++
Sbjct: 136 RTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAGG 195
Query: 247 TLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAER-----QHSHKALKEQARKRV 301
K ++ KS + + L R
Sbjct: 196 AGGSLEKKLKEMSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRF 255
Query: 302 QKDDDDEPKELLEK 315
D DDE + K
Sbjct: 256 DIDFDDEKGGFIIK 269
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 51.1 bits (123), Expect = 5e-07
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
L DV + + L+++ + L+GP+G GK+T L ++ G P++G++
Sbjct: 6 LVDVWKVFGEVTAV---REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY- 61
Query: 396 SPRLRIGKF---DQHSGEHLFPDD----------------TPCE---YLMKLFNLPYEKS 433
IG D G + P D T + + +KL +P ++
Sbjct: 62 -----IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 434 RRQL----GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+++ + GL + P R+LSGGQ+ RVAL + P + ++DEP +NLD
Sbjct: 117 DQRVREVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Score = 39.1 bits (92), Expect = 0.003
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V +L++ G L+GP+G GKTT LR IA
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 50.3 bits (121), Expect = 8e-07
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 32/170 (18%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L ++T + + L ++ + L+GP+G GK+T L ++ G P +G +
Sbjct: 14 LENLTKRFGNFTAV---NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 395 -------KSPRLRIGKFD-----QHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQL-- 437
P+ R + Q ++P T E + +K+ P ++ +++
Sbjct: 71 GDRDVTYLPPKDR----NISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRW 124
Query: 438 --GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + + P LSGGQ+ RVA+A + PD+L++DEP +NLD
Sbjct: 125 AAELLQIEELLNRYP-AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Score = 39.5 bits (93), Expect = 0.002
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ NL I G L+GP+G GKTT LR IA
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 48.4 bits (116), Expect = 3e-06
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 45/170 (26%)
Query: 345 YPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 402
Y G ++ V+ +++ VAL+GP+G GK+T L +L G P GE +
Sbjct: 12 YFGKVKAVDGVS--FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE------IYFD 63
Query: 403 KFDQHSGEHLFPDDTPCE-----------------------YLMKLFNLPYEKSRRQL-- 437
+ L D P + ++ + ++ +++
Sbjct: 64 -------DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE 116
Query: 438 --GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + P LSGGQ+ RVALA + P +L+ DEP +NLD
Sbjct: 117 IARKLLIDNLLDRKP-TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Score = 41.0 bits (97), Expect = 8e-04
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V+ + ++ G L+GP+G GKTT L +A
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA 50
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 43.6 bits (102), Expect = 5e-05
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 255 QKRKE---LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR------VQKDD 305
+ +E + K E Q K+++E+ + E+ R+ + K L+E +++ + ++
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 306 DDEPKELLEKPREYIV 321
K ++P I+
Sbjct: 139 RIADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 2.0
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 250 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 306
K M + R++ K+ E ++ E + K K + + KA + Q D D
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQ----VEKNKINNRIADKAFYQ------QPDAD 152
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 44.7 bits (106), Expect = 6e-05
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
LS G K + LA L+ IL+LDEP+ +LD + +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQI 193
Score = 34.7 bits (80), Expect = 0.072
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 59 DIKVENFSLS-AKGVEL-FHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+ V++ + +G N + I+ G+R GL+G G GK+TLL
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Score = 30.5 bits (69), Expect = 1.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
+ D+T Y GG +LE ++F + RV L+G G GKST L+
Sbjct: 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 41.9 bits (98), Expect = 1e-04
Identities = 21/173 (12%), Positives = 52/173 (30%), Gaps = 19/173 (10%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
++ + G G+GK+T + + L + +R + + +G + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW-TEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 424 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE--PT 481
F + Y + + A E + ++I+DE
Sbjct: 61 SKFFTSKKLVGS---------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM 111
Query: 482 NNLDIESIDALAEAIKNYQGGVILVSHD-------ERLIRETDCELWALEKKN 527
+ D + + + + V+ + + R L L +N
Sbjct: 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
Score = 30.4 bits (68), Expect = 1.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 87 RYGLVGPNGHGKTTLLRHIATR 108
+ + G G GKTTL++ I R
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVS 507
SGGQK R+++A + P +LILD+ T+++D + + + +K Y G +++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
Score = 41.8 bits (99), Expect = 5e-04
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 324 RFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 379
+ P V G +V F Y L VNF + S VA++G G GKST +
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 380 NLL 382
NL+
Sbjct: 387 NLI 389
Score = 29.5 bits (67), Expect = 3.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLL 102
N + G ++G G GK+TL+
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLM 386
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 42.1 bits (100), Expect = 2e-04
Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 66/195 (33%)
Query: 366 ALVGPNGIGKSTFLNLLKG----ELTPNKGE--------LRKSP--RLRIGKF------- 404
AL+GPNG GKST +L G + +GE L SP R R G F
Sbjct: 33 ALMGPNGAGKSTLGKILAGDPEYTVE--RGEILLDGENILELSPDERARKGLFLAFQYPV 90
Query: 405 ---------------DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 449
G + E+ K+ +K+ L SY
Sbjct: 91 EVPGVTIANFLRLALQAKLGREV----GVAEFWTKV-----KKALELLDW--DESYLS-- 137
Query: 450 PIRDL----SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNYQG- 501
R L SGG+K R + +L + P +LDE + LD IDAL A + +G
Sbjct: 138 --RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDALKVVARGVNAMRGP 192
Query: 502 --GVILVSHDERLIR 514
G ++++H +R++
Sbjct: 193 NFGALVITHYQRILN 207
Score = 34.8 bits (81), Expect = 0.048
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ + S G + NL + G + L+GPNG GK+TL + +A
Sbjct: 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILA 50
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 40.6 bits (96), Expect = 7e-04
Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 68/198 (34%)
Query: 366 ALVGPNGIGKSTFLNLLKG----ELTPNKGE--------LRKSP--RLRIGKF------- 404
A++GPNG GKST L G E+T G L SP R G F
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVT--GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV 107
Query: 405 ------------------DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA 446
+ G+ ++ + E+ L M
Sbjct: 108 EIPGVSNQFFLQTALNAVRSYRGQ---ETLDRFDFQDLM-----EEKIALLKM--PEDLL 157
Query: 447 HTIPIRDL----SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNY 499
R + SGG+K R + ++ + P++ ILDE + LD IDAL A+ + +
Sbjct: 158 T----RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD---IDALKVVADGVNSL 210
Query: 500 QG---GVILVSHDERLIR 514
+ I+V+H +R++
Sbjct: 211 RDGKRSFIIVTHYQRILD 228
Score = 33.7 bits (78), Expect = 0.13
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 43 SSKASSKRSTVDDNSVDI-KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
SS S + + +++ +S + + +L + G + ++GPNG GK+TL
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V + + NL I G VGP+G GK+TLLR IA
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50
Score = 37.9 bits (89), Expect = 0.007
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ LSGGQ+ RVA+ + P + +LDEP +NLD
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 31.4 bits (72), Expect = 0.78
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+ L +VT + V + LD+ V VGP+G GKST L ++ G T G+L
Sbjct: 4 VQLQNVTKAWGEVVVS---KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 394 R 394
Sbjct: 61 F 61
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 36.6 bits (85), Expect = 0.007
Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 24/159 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-----TRALAIPS 114
+ V+NF S + ++ G ++G NG GK++LL I +
Sbjct: 6 VTVKNF-RS------HSDTVVEFKEGI-NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIK 57
Query: 115 SIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS 174
+ + D+ ++++ D + ++ + K SG+ V +E K
Sbjct: 58 KDEFTK-----VGARDTYIDLIFEKDGTKYRITRRFLK--GYSSGEIHAMKRLVGNEWKH 110
Query: 175 IEADAAEPRARRILAGLGFT----TIYIPSSRVHEIMRT 209
+ +++ + + + + IYI ++ I+ +
Sbjct: 111 VTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILES 149
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 35.1 bits (81), Expect = 0.058
Identities = 11/72 (15%), Positives = 25/72 (34%)
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 516
++ AL N I+++D+ + ++ I+ G + S + +
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFA 328
Query: 517 DCELWALEKKNI 528
+E NI
Sbjct: 329 QKHQTNIEDLNI 340
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 34.2 bits (79), Expect = 0.058
Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 24/159 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-----TRALAIPS 114
+ V+NF S + ++ G ++G NG GK++LL I +
Sbjct: 6 VTVKNF-RS------HSDTVVEFKEGI-NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIK 57
Query: 115 SIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS 174
+ + D+ ++++ D + ++ + K SG+ V +E K
Sbjct: 58 KDEFTK-----VGARDTYIDLIFEKDGTKYRITRRFLK--GYSSGEIHAMKRLVGNEWKH 110
Query: 175 IEADAAEPRARRILAGLGFT----TIYIPSSRVHEIMRT 209
+ +++ + + + + IYI ++ I+ +
Sbjct: 111 VTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILES 149
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 33.9 bits (78), Expect = 0.069
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE--------LTPNKGELRKSPRLRI 401
+ + + GP GK++ L LL + P + +
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 95
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 34.3 bits (79), Expect = 0.090
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNL-DIESIDALAEAIKNYQGGV-ILV 506
RD++ GQ A L L+ P LD + D++SI AL + ++ GG+ +LV
Sbjct: 37 RDVTRGQAAVQQLQAEGLS-PRFHQLD-----IDDLQSIRALRDFLRKEYGGLDVLV 87
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 33.2 bits (76), Expect = 0.14
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE--------LTPNKGELRKSPRLRI 401
+ + + GP GK++ L LL + P + +
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 59
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 34.0 bits (79), Expect = 0.14
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
+VA+VG PN +GKST N + +
Sbjct: 182 KVAIVGRPN-VGKSTLFNAILNK 203
Score = 29.0 bits (66), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
V +VG PN +GKST N L +
Sbjct: 4 VLIVGRPN-VGKSTLFNKLVKK 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 33.6 bits (78), Expect = 0.17
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
+ L+G PN +GKS+ +N + GE
Sbjct: 177 QFCLIGRPN-VGKSSLVNAMLGE 198
Score = 28.6 bits (65), Expect = 5.8
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
VA+VG PN +GKST N + GE
Sbjct: 6 VAIVGRPN-VGKSTIFNRIAGE 26
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.8 bits (74), Expect = 0.35
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 308
++ Y KR E E + +E+++R+M Q + +++AE + + K L E+ R++K DE
Sbjct: 320 LQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEK-FDRLKKLHQDE 378
Query: 309 PKELLEKPRE 318
K+L +K +
Sbjct: 379 KKKLEDKKKS 388
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.2 bits (74), Expect = 0.43
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 366 ALVGPNGIGKSTFLNLLKGEL 386
G +G+GKS+ LN + EL
Sbjct: 177 VFAGQSGVGKSSLLNAISPEL 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 32.1 bits (74), Expect = 0.43
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 366 ALVGPNGIGKSTFLNLLKGEL 386
+ G +G+GKS+ LN + L
Sbjct: 173 TMAGLSGVGKSSLLNAINPGL 193
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.0 bits (72), Expect = 0.45
Identities = 14/102 (13%), Positives = 32/102 (31%)
Query: 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139
L+ ++G GK+++++ +DL E+ S + +
Sbjct: 25 LKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKE 84
Query: 140 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 181
VK L K ++ G + ++ + A
Sbjct: 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 32.0 bits (74), Expect = 0.48
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
VA+VG PN +GKST LN L G
Sbjct: 10 VAIVGKPN-VGKSTLLNNLLGV 30
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 30.9 bits (71), Expect = 0.52
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 363 SRVALVG-PNGIGKSTFLNLLKGE 385
+V +VG PN +GKS+ N L +
Sbjct: 2 HKVVIVGRPN-VGKSSLFNRLLKK 24
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 32.0 bits (72), Expect = 0.52
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKG 391
R+ L G GIGKST ++ +
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSP 36
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 31.7 bits (71), Expect = 0.52
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
E L G NG GKST + L P+ L
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 31.2 bits (70), Expect = 0.52
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 34/166 (20%)
Query: 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT--- 417
M +++VG + GK+T + + L + R+ + K H + +
Sbjct: 1 MSLILSIVGTSDSGKTTLITRMMPILR------ERGLRVAVVKRHAHGDFEIDKEGKDSW 54
Query: 418 --------------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
++ + + L Y + S K R+
Sbjct: 55 KIYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDY-DLVITEGFSKAGKDRIV 113
Query: 464 LA-----ELTLNNPDIL--ILDEPTNN---LDIESIDALAEAIKNY 499
+ IL + DE + + ++ +AE I +
Sbjct: 114 VVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL 159
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 31.7 bits (73), Expect = 0.53
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
VA+VG PN +GKST LN L G
Sbjct: 13 VAIVGKPN-VGKSTLLNNLLGT 33
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 31.6 bits (72), Expect = 0.54
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
+ V VG GK+ L
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTG 30
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 31.7 bits (73), Expect = 0.57
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
+A+VG PN +GKST LN L G+
Sbjct: 11 IAIVGRPN-VGKSTLLNKLLGQ 31
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 31.9 bits (72), Expect = 0.58
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 221 QSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMS 280
Q ++N ++ YY K++Y + Y I K G
Sbjct: 211 QYYINQFEHLKTIKNISINGYYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGK- 269
Query: 281 KEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNP 328
+ H++L E+ K K+ PKE+ Y+ P P
Sbjct: 270 ------EDIHRSLVEELTKISAKEKFTPPKEVTMYYENYVAIENNPIP 311
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.61
Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 12/165 (7%)
Query: 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
R+ ++G GKSTFLN L GE + L + ++ + +D
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKS 126
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479
+ N Y+ + A + V A + + E
Sbjct: 127 PQQLDFQNFKYKYTI---------DPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIE 177
Query: 480 PTNNLDIESIDALAEAIKNYQG---GVILVSHDERLIRETDCELW 521
++ + +A E Y ++ V + +
Sbjct: 178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 31.5 bits (72), Expect = 0.66
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 347 GGKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKG 384
KVLL+K D +RV +VG PN GKST +N LKG
Sbjct: 86 PRKVLLKK--LSFDRLARVLIVGVPN-TGKSTIINKLKG 121
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 31.7 bits (71), Expect = 0.71
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPN 389
RV + GP+G+GK+T LL + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRD 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.77
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 9 EKKQLKK-QSK---YQQELSA 25
EK+ LKK Q+ Y + SA
Sbjct: 18 EKQALKKLQASLKLYADD-SA 37
Score = 29.9 bits (66), Expect = 1.3
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 26/50 (52%)
Query: 140 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 189
+K +K KL+ L+L Y D+A P A LA
Sbjct: 18 EKQALK------KLQ------ASLKL---Y------ADDSA-P-A---LA 41
Score = 29.1 bits (64), Expect = 2.1
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 14/34 (41%)
Query: 524 EKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVA 557
EK+ ++K KL Y A
Sbjct: 18 EKQALKKLQASL-----KL---------YADDSA 37
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.2 bits (70), Expect = 0.82
Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 25/158 (15%)
Query: 365 VALVGPNGIGKSTFL-----NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
ALV P G GKS + G GEL P + + E D P
Sbjct: 33 GALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYL------PAE-----DPPT 81
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD- 478
+L L S + + + + +++LD
Sbjct: 82 AIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDT 141
Query: 479 --------EPTNNLDIESIDALAEAIKNYQGGVILVSH 508
E + + I + + ++ + H
Sbjct: 142 LRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 179
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.0 bits (71), Expect = 0.87
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 366 ALVGPNGIGKSTFLNLLKGE 385
L GP+G+GKS+ L+ L GE
Sbjct: 169 ILAGPSGVGKSSILSRLTGE 188
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 31.1 bits (71), Expect = 0.94
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSH 508
D +D ++++ +A I N +++ H
Sbjct: 18 DSEEPAIDRDNLERIASEIGNASPSSLMIVH 48
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.7 bits (69), Expect = 0.97
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 360 DMESRVALVGPNGIGKSTFLNLLKGE 385
+ + R+ LVG G GKS N + G
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGR 52
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 30.8 bits (68), Expect = 1.0
Identities = 23/212 (10%), Positives = 56/212 (26%), Gaps = 17/212 (8%)
Query: 89 GLVGPNGHGKTTLL---------RHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139
GP G GK+ ++ +++ S D ++ ++ N L
Sbjct: 35 FFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQ 94
Query: 140 DKN-----RVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT 194
+ +KLL+E + + + KS + L
Sbjct: 95 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVD 154
Query: 195 TIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYV 254
+ + + + + ++ + L+ +L
Sbjct: 155 IFILEGWFLG--FNPILQGIENNDLLTGDMVDVNAKLFF-YSDLLWRNPEIKSLGIVFTT 211
Query: 255 QKRKELTKEYELQEKQIREMKSQGMSKEKAER 286
+ QE ++ +GM+ E+
Sbjct: 212 DNINNVYGWRLQQEHELISKVGKGMTDEQVHA 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 365 VALVGPNGIGKSTFLNLLKGE 385
G +G+GKS+ LN L G
Sbjct: 218 SIFAGQSGVGKSSLLNALLGL 238
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.8 bits (68), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
+V + G PN GKS+ LN L G
Sbjct: 6 KVVIAGRPN-AGKSSLLNALAGR 27
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 30.3 bits (68), Expect = 1.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 503
RD++ G +A L N LD T+ I ++ +LA+ IK + G +
Sbjct: 44 RDVTKGHEAVEKLKNSNHENVVFHQLDV-TD--PIATMSSLADFIKTHFGKL 92
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 30.6 bits (70), Expect = 1.5
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
+ G PN GKST LN L G+
Sbjct: 235 STVIAGKPN-AGKSTLLNTLLGQ 256
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 30.0 bits (68), Expect = 1.6
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQGGVIL--- 505
R+ + L +L N+ +I IL+ +D+ ++ D L I+ L
Sbjct: 56 RNREQAK----ELEDLAKNHSNIHILE-----IDLRNFDAYDKLVADIEGVTKDQGLNVL 106
Query: 506 -----VSHDERLIRETDCELW 521
++ I +
Sbjct: 107 FNNAGIAPKSARITAVRSQEL 127
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.5 bits (68), Expect = 1.6
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIVLS 138
+ + L+G GK++LLR I LY E+ ++ + +S
Sbjct: 27 SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTIS 86
Query: 139 ADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 189
+ K L+ +L L EV+ EL D E I+A
Sbjct: 87 PFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELN----DLGEELGEFIVA 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 30.6 bits (70), Expect = 1.6
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
R+ +VG PN +GKST LN L E
Sbjct: 245 RMVIVGKPN-VGKSTLLNRLLNE 266
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.5 bits (70), Expect = 1.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE 385
+VA+VG PN +GKS+ LN
Sbjct: 226 KVAIVGRPN-VGKSSLLNAWSQS 247
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 29.9 bits (68), Expect = 1.8
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 145
GP G GKT +A + + E+ ASD+ +++V ++++K
Sbjct: 43 FSGPPGTGKTATAIALARDLFGENWRDNFI----EMNASDERGIDVV----RHKIK 90
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.0 bits (68), Expect = 1.9
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 39/135 (28%)
Query: 256 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ-------------ARKRVQ 302
K +E T ++ +Q S S + + K L+E +
Sbjct: 12 KIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSV 71
Query: 303 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME 362
+ + ++ K +E + + P K
Sbjct: 72 EAGGLTEENVVGKLQEILCDMLPSADKWQEPI------------HSKY------------ 107
Query: 363 SRVALVGPNGIGKST 377
+ L G G GK+T
Sbjct: 108 --IVLFGSTGAGKTT 120
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.1 bits (67), Expect = 1.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 367 LVGPNGIGKSTFLNLL 382
+VG +G+GKST +N L
Sbjct: 13 VVGESGLGKSTLINSL 28
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.2 bits (67), Expect = 2.0
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 367 LVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLR 400
+VG +G+GKST +N L +L P + + ++
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIE 57
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 2.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 129
R L GP G GKTTL+ + + +D Y E+ +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGR 45
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.0 bits (68), Expect = 2.1
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 31/97 (31%)
Query: 364 RVALVG-PNGIGKSTFLNLLKGE---LTPNK-GELRKSPRLRIGK--------------- 403
R ++G PN +GKST +N L + T ++ G +++GK
Sbjct: 122 RALIIGIPN-VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF 180
Query: 404 FDQHSG----------EHLFPDDTPCEYLMKLFNLPY 430
D+ G + + + ++ Y
Sbjct: 181 EDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHY 217
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 30.1 bits (67), Expect = 2.1
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGE 392
R+ L G GIGK+T
Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAITPNR 42
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 29.1 bits (66), Expect = 2.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSI 116
L G G GKTTL R + + + ++
Sbjct: 38 LNGDLGAGKTTLTRGML-QGIGHQGNV 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 2.2
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 360 DMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSP 397
++ ++ GP GK+T L + ++ KGE+
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLA 50
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 29.8 bits (66), Expect = 2.2
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 2/97 (2%)
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
G+ S I + + + P IL L P N E I
Sbjct: 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIR 128
Query: 491 ALAEAIKNYQGGVILVSHDERLI--RETDCELWALEK 525
+ Y+ GV+L S + R+ LW +
Sbjct: 129 EIIRKASMYRMGVLLFSKHPQAGLGRQNLINLWIENR 165
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.0 bits (68), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
+ + G N +GKS+F+N L G+
Sbjct: 37 IVVAGRRN-VGKSSFMNALVGQ 57
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 30.0 bits (67), Expect = 2.4
Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 9/150 (6%)
Query: 183 RARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242
RA G+ T+ +P + + + + K + N + +H D K
Sbjct: 398 RAAE----HGYPTVTLPGAAIWHMAWSDKDDAIDWQAYFHLRNRLVVAAMHWDGPKAQVI 453
Query: 243 KGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQ 302
+ K + EY Q + + ++ + AL + R R
Sbjct: 454 GLVRSHLKATL---KHLACLEYSTVAIQNKAID-DFLAGPEHIFSILESALPQVHRIRKS 509
Query: 303 KDDDDEPKELLEKPREYIVKFRFPNPPYLP 332
D E P K + PP P
Sbjct: 510 YPDAVVLPAASELPPPLH-KNKAMKPPVNP 538
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 29.2 bits (65), Expect = 2.4
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 255 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSH--------KALKEQARKRVQKDDD 306
+ + Q K + ++ + E + ++ E+ ++R++ +
Sbjct: 40 NAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSE 99
Query: 307 DEPKELLEK 315
DE E ++
Sbjct: 100 DEYFESVKA 108
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.8 bits (66), Expect = 2.5
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
LEK+ RV +VG + GK++ L
Sbjct: 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167
Score = 28.2 bits (62), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 84 SGRRYGLVGPNGHGKTTLLRHIATRAL 110
G R +VG + GKT+L R + + AL
Sbjct: 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.1 bits (69), Expect = 2.5
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 454 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 492
LSGG+ R+ LA EL TL ILDEPT L E + L
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTL-----YILDEPTVGLHFEDVRKL 847
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.2 bits (68), Expect = 2.5
Identities = 17/140 (12%), Positives = 35/140 (25%), Gaps = 28/140 (20%)
Query: 260 LTKEYELQEKQIREMKSQGMSKEKAER---------------------QHSHKALKEQAR 298
+ L + ++KSQ ++A +K L +
Sbjct: 29 MISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYISFYNALLHEGYKDLAALLQ 88
Query: 299 KRVQKDDDDEPKELLEKPREYIVKFRFP-NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 357
+ K+ ++ P P + + + +K+
Sbjct: 89 SGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLV------HAIQQKLWK 142
Query: 358 GLDMESRVALVGPNGIGKST 377
V + G G GKS
Sbjct: 143 LNGEPGWVTIYGMAGCGKSV 162
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 2.6
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 255 QKRKELTKEYELQEKQIREMKSQ--GMSKEKAERQHSHKALKEQARKRVQ--KDDDDEPK 310
K +L ++ + Q K+ + + + + + ++ E+ R + K+ +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 311 ELLEK 315
L E+
Sbjct: 988 SLQEE 992
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 29.7 bits (67), Expect = 2.7
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 525 KKNIRKFNGDFDDYREKLLTSLGE---AMVYNPSVAAEQDDDEDYE 567
K N+ K D GE A+ + + +
Sbjct: 209 KPNVVKTYSKSSDLANMFSN--GEIVAAVASDFAFGTISKAKPEVI 252
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.8 bits (68), Expect = 2.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 454 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---- 501
LSGG+ R+ LA EL T+ +LDEPT L ++ L +
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTV-----YVLDEPTTGLHPADVERLQRQL---VKLVDA 782
Query: 502 G--VILVSHDERLIRETD 517
G VI V H +++ +D
Sbjct: 783 GNTVIAVEHKMQVVAASD 800
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 29.1 bits (66), Expect = 2.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 357 FGLDMESRVALVGPNGIGKSTFLNLLKGE 385
+G + E R+ ++G +G GK+T L L+
Sbjct: 13 WGSNKELRILILGLDGAGKTTILYRLQIG 41
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.8 bits (68), Expect = 2.8
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 454 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 492
LSGG+ RV LA EL TL ILDEPT L ++ I L
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTL-----YILDEPTTGLHVDDIARL 585
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 29.1 bits (66), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
+L K+ D E R+ L+G + GK+T L L E
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.4 bits (66), Expect = 3.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 90 LVGPNGHGKTTLLRHIATRA 109
L GP G GKT + R +A
Sbjct: 243 LYGPPGTGKTLIARAVANET 262
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.5 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
E L G NG GKST + L P+ L
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.1 bits (66), Expect = 3.6
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 95 GHGKTTLLRHI 105
G GKTTLLRHI
Sbjct: 14 GAGKTTLLRHI 24
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 29.4 bits (67), Expect = 3.9
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 340 DVTFGYPGGKVL 351
FG PG K+
Sbjct: 27 RQVFGIPGAKID 38
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 29.3 bits (66), Expect = 4.1
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 306 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV 365
+ E E + F + P + V G + +E + + + V
Sbjct: 8 NREALAPREYGESLELGIEFTTTEEIEVPEKLIDQVI----GQEHAVEVIKTAANQKRHV 63
Query: 366 ALVGPNGIGKSTF 378
L+G G GKS
Sbjct: 64 LLIGEPGTGKSML 76
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction,
syphilis, lipoprotein, transport protein; HET: EDO;
1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Length = 328
Score = 28.9 bits (65), Expect = 4.2
Identities = 6/70 (8%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 258 KELTKEYELQEKQIREMKSQGM---SKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 314
+ + + ++ G+ E Q ++ + L E
Sbjct: 260 ANNLETLD--RECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVKRIQARLPGMLNMTLYE 317
Query: 315 KPREYIVKFR 324
K + + +
Sbjct: 318 KIKHLLYSAQ 327
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 29.2 bits (66), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ L G+R G+ +G GK+TLL I
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKSTLLGMIC 92
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.8 bits (65), Expect = 4.5
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 145
GP G GKT +A + + E+ ASD+ +++V ++++K
Sbjct: 43 FSGPPGTGKTATAIALARDLFGENWRDNFI----EMNASDERGIDVV----RHKIK 90
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 28.7 bits (65), Expect = 4.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 90 LVGPNGHGKTTLL 102
+ G NG GKT LL
Sbjct: 31 IYGENGAGKTNLL 43
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.1 bits (65), Expect = 4.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELT 387
RV + G G+GKST + L L
Sbjct: 81 RVGITGVPGVGKSTAIEALGMHLI 104
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 28.8 bits (64), Expect = 4.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
+ ++G G+GKS+ +N + GE
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGE 62
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.9 bits (64), Expect = 4.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
VA+ G G GKS+F+N L+G
Sbjct: 71 NVAVTGETGSGKSSFINTLRGI 92
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 28.4 bits (64), Expect = 4.8
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 463 ALAELTLNNPDILILD-EPTNNLDIESIDALAEAIKN 498
L + N+PD+ ++ N+ + ++ A AEA+K
Sbjct: 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.0 bits (66), Expect = 5.0
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 454 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 492
LSGG+ RV LA EL T+ ILDEPT L + I L
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTV-----YILDEPTTGLHFDDIRKL 905
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.0 bits (66), Expect = 5.1
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 454 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 492
LSGG+ RV LA EL TL ILDEPT L ++ I L
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTL-----YILDEPTTGLHVDDIARL 887
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 28.7 bits (64), Expect = 5.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELT 387
RV L GP G GKSTF+ LT
Sbjct: 76 RVGLSGPPGAGKSTFIEYFGKMLT 99
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 27.8 bits (62), Expect = 5.2
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 255 QKRKELTKEYELQEKQIREMKSQGMSKEKA-ERQHSHKALKEQARKRVQKDDD 306
+ + KE ++K R + SKE+ + ++K R +V+ +
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVK-AMRGKVRSGRE 140
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.7 bits (64), Expect = 5.3
Identities = 30/220 (13%), Positives = 61/220 (27%), Gaps = 51/220 (23%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAI------------PSSI---------DLLY 120
G G GKT L+ A A + + D
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337
Query: 121 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAA 180
E++ A + + + E + + R+ D L ++ +
Sbjct: 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPA-------RI--AIDSLSALARGVS 388
Query: 181 EPRARRILAGL-------GFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIH 233
R+ + G+ T ++ + + M T +S I II
Sbjct: 389 NNAFRQFVIGVTGYAKQEEITGLFT--NTSDQFMGAHSITDSHIST-------ITDTIIL 439
Query: 234 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIRE 273
L Y + + + + V K + + ++E I +
Sbjct: 440 LQ-----YVEIRGEMSRAINVFKMRGSWHDKAIREFMISD 474
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 28.9 bits (64), Expect = 5.5
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 250 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKA 292
++ + +E + E Q RE + G S A H H
Sbjct: 759 SDLWKEDLAAFVEELDKVESQEREDGAPGFSSISAHHHHHHHH 801
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 28.0 bits (63), Expect = 5.6
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 454 LSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV--ILVS 507
+SGG+KA ALA + + DE +LD ++ +A+ IK I+++
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124
Query: 508 H 508
Sbjct: 125 L 125
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 28.7 bits (65), Expect = 5.7
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 340 DVTFGYPGGKVL 351
FG G +
Sbjct: 28 GKVFGVVGREAA 39
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.0 bits (63), Expect = 5.8
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 365 VALVG-PNGIGKSTFLNLLKGE 385
+ G N +GKST + L G+
Sbjct: 4 IIFAGRSN-VGKSTLIYRLTGK 24
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 28.6 bits (64), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELT 387
R+ + G G GKSTFL L
Sbjct: 58 RLGVTGTPGAGKSTFLEAFGMLLI 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 28.0 bits (63), Expect = 5.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 357 FGLDMESRVALVGPNGIGKSTFLNLLKGE 385
+ E R+ ++G + GK+T L GE
Sbjct: 13 KQKERELRLLMLGLDNAGKTTILKKFNGE 41
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB),
bicarbonate transport, anion T membrane protein, STAS
domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Length = 118
Score = 27.3 bits (61), Expect = 6.0
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 470 NNPDILILD-EPTNNLDIESIDALAEAIKNYQ-GGVILVSHDERLIRETDCELWALEKKN 527
I+IL + LD +DA +K G + V + E T + +
Sbjct: 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRT------MARAG 97
Query: 528 IRKFNGDFDDYREKLLTSLGEAM 550
I+ G R + AM
Sbjct: 98 IQPIPG-----RLAFFPNRRAAM 115
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.8 bits (65), Expect = 6.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 340 DVTFGYPGGKVL 351
D FGYPGG +L
Sbjct: 98 DTVFGYPGGAIL 109
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 28.6 bits (65), Expect = 6.3
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 340 DVTFGYPGGKVL 351
+ FG G +
Sbjct: 20 EHLFGLHGAHID 31
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.3 bits (63), Expect = 6.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 358 GLDMESRVALVGPNGIGKSTFL 379
G + V L G G GK+TF
Sbjct: 26 GFPEGTTVLLTGGTGTGKTTFA 47
Score = 27.9 bits (62), Expect = 8.7
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALA 111
G L G G GKTT +
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 28.3 bits (62), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPN 389
RV + GP+G+GK+T LL + +
Sbjct: 51 RVYIDGPHGMGKTTTTQLLVALGSRD 76
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.5 bits (63), Expect = 7.0
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 16/171 (9%)
Query: 349 KVLLEKVNFGLDMESR---VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405
V + V + + A+V G + + + + N +L +
Sbjct: 103 DVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPV--NVNKLAQDSINIAQIVP 160
Query: 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVAL 464
G HL L + RR F ++ I L+ +V+
Sbjct: 161 M-DGFHL-----SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKI--LAKTSLCKVSS 212
Query: 465 AELTLNNPDILILDEPTNNLDIESIDA--LAEAIKNYQGGVILVSHDERLI 513
+ + T + I I A+K+ +S R++
Sbjct: 213 HHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIV 263
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.6 bits (62), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
+ R+ +VG + GK+T L LK
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLG 52
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 28.3 bits (64), Expect = 7.3
Identities = 2/12 (16%), Positives = 4/12 (33%)
Query: 340 DVTFGYPGGKVL 351
+ G+ G
Sbjct: 20 EQVVGFIGHTSH 31
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 28.3 bits (64), Expect = 7.3
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 340 DVTFGYPGGKVL 351
D FG PG L
Sbjct: 18 DTVFGNPGSNAL 29
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 28.2 bits (63), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELT 387
RV + G G+GKST ++ L LT
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLT 80
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.6 bits (62), Expect = 7.4
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 92 GPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 137
G G GK+ LL+ +AL + + +
Sbjct: 43 GEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLA 88
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.9 bits (61), Expect = 7.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPN 389
L G +G GK+T + + E N
Sbjct: 37 LGGQSGAGKTTIHRIKQKEFQGN 59
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 28.2 bits (64), Expect = 7.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 340 DVTFGYPGGKVL 351
+ F YPGG +
Sbjct: 28 ETVFAYPGGASM 39
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.7 bits (61), Expect = 7.7
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 355 VNFGLDMESRVALV-GPNGIGKSTFLNLLKGELTPNKGELR 394
+N D+ + L+ G G GKST L K
Sbjct: 1 MNMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.7 bits (64), Expect = 8.0
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 361 MESR--VALVGPNGIGKSTFLNLLKGELTPNKGE 392
+++ + LVG G GK+ + + G
Sbjct: 920 QKTQQALILVGKAGCGKTATWKTVIDAMAIFDGH 953
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 28.1 bits (63), Expect = 8.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
NA L + G+R GL +G GK+ LL +A
Sbjct: 149 NALLTVGRGQRMGLFAGSGVGKSVLLGMMA 178
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 27.9 bits (63), Expect = 8.4
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
A+ + L+ P+ L N +D ++ L+ I+
Sbjct: 15 AVLRIRLDRPEKL------NAVDTPMLEELSVHIR 43
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.3 bits (64), Expect = 8.6
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 340 DVTFGYPGGKVL 351
FG PG +
Sbjct: 43 TTAFGVPGAAIN 54
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 8.6
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 360 DMESRVALVGPNGIGKSTFLNLLKGELTPN 389
+ R+ L+G GKS+ ++ +++PN
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN 47
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 8.7
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE----VEASDDSAVNIVLSADKNRVK 145
++ G GK+ + + R S + ++ E+E V I + + ++
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLG--GVWINCTGGEGKIN 97
Query: 146 LLKECSKLERDESGDNQLRLTEVYDELKSIEA 177
L+ + +E +N + + + ++++
Sbjct: 98 PLQVRLRPVEEEDEENAVFQSPLALHIQTLRT 129
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 28.0 bits (63), Expect = 9.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
+A +TL PD L N L E+ L + +
Sbjct: 26 GVATVTLARPDKL------NALTFEAYADLRDLLA 54
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 27.8 bits (61), Expect = 9.4
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 250 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDD 307
K++Y+Q KE Y E + E + + ++ R+ K K A + +Q
Sbjct: 157 KELYIQHAKEDETRYH-NEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEECLQHHHHH 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.377
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,708,948
Number of extensions: 552379
Number of successful extensions: 2192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 388
Length of query: 568
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 469
Effective length of database: 3,937,614
Effective search space: 1846740966
Effective search space used: 1846740966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.3 bits)