RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16366
(568 letters)
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 114 bits (286), Expect = 2e-29
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+L V F Y + +L ++F S +A GP+G GKST +LL+ P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 395 -----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY--------EKSRR 435
++ R +IG Q + L + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQD--SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 436 QLGMFGLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
+ + +P +T +SGGQ+ R+A+A L NP IL+LDE T +LD ES +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 493 AEAIKNYQGG--VILVSHDERLIRETD 517
+A+ + G ++++H I + D
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDAD 205
Score = 47.9 bits (114), Expect = 1e-06
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + + ++ + + + GP+G GK+T+ +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 110 bits (276), Expect = 6e-28
Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 307 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRV 365
DE K ++++ + +VTF YPG +V L +N + V
Sbjct: 1 DEGKRVIDRATGDLE----------------FRNVTFTYPGREVPALRNINLKIPAGKTV 44
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFP 414
ALVG +G GKST +L+ ++G + S R ++ Q+ HLF
Sbjct: 45 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV--HLFN 102
Query: 415 DDTPCEY-LMKLFNLPYEKSRRQLGMFGLPSYAHTIPI----------RDLSGGQKARVA 463
D + E+ M + + + LSGGQ+ R+A
Sbjct: 103 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 162
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
+A L + ILILDE T+ LD ES A+ A+ Q ++++H I + D
Sbjct: 163 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQAD 218
Score = 49.1 bits (117), Expect = 5e-07
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
D++ N F+ + V N NL+I +G+ LVG +G GK+T+ I
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 110 bits (276), Expect = 7e-28
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 338 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
+ V+F Y + L+ +N ++ VA VG +G GKST +NL+ G++
Sbjct: 19 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYL-MKLFNLPYEKSRRQLGMFGLPS 444
S R +IG Q ++ DT E + + E+ M
Sbjct: 79 GHNIKDFLTGSLRNQIGLVQQD---NILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 445 YAHTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
+ +P LSGGQK R+++A + LNNP ILILDE T+ LD+ES + E
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 495 AIKNYQGG--VILVSHDERLIRETD 517
A+ ++V+H I D
Sbjct: 196 ALDVLSKDRTTLIVAHRLSTITHAD 220
Score = 48.6 bits (116), Expect = 6e-07
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I +++ F + + + NL I G VG +G GK+TL+ I
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 107 bits (269), Expect = 9e-27
Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 27/226 (11%)
Query: 306 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGY--PGGKVLLEKVNFGLDMES 363
++ ELLEK ++ + + +V+F + G +L+ +N ++
Sbjct: 13 EEGFGELLEKVQQSNGDRKHSSDEN---------NVSFSHLCLVGNPVLKNINLNIEKGE 63
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
+A+ G G GK++ L L+ GEL ++G ++ S R + Q S + P +
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--VSFCSQFS--WIMPGTIKENIIF 119
Query: 424 KLFNLPYEK------SRRQLGMFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDI 474
+ Y + Q + +T+ LSGGQ+AR++LA + D+
Sbjct: 120 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDERLIRETD 517
+LD P LD+ + + + E+ ILV+ +R+ D
Sbjct: 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Score = 51.8 bits (124), Expect = 6e-08
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 42 QSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
+ + S+ + ++ + L G + N NL I G + G G GKT+L
Sbjct: 21 EKVQQSNGDRKHSSDENNVSFSHLCLV--GNPVLKNINLNIEKGEMLAITGSTGSGKTSL 78
Query: 102 LRHIA 106
L I
Sbjct: 79 LMLIL 83
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 104 bits (262), Expect = 4e-26
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 28/205 (13%)
Query: 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
++ F Y V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 4 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR---------- 435
R ++G Q + L + + EK
Sbjct: 64 GHDLALADPNWLRRQVGVVLQDN--VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 436 -QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
G + LSGGQ+ R+A+A +NNP ILI DE T+ LD ES +
Sbjct: 122 ISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 495 AIKNYQGG--VILVSHDERLIRETD 517
+ G VI+++H ++ D
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNAD 205
Score = 50.7 bits (121), Expect = 1e-07
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 40/214 (18%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
DI N F + N NL I G G+VG +G GK+TL + I IP +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENG 58
Query: 117 DLLYCEQEVEASDDSAV---------NIVLSADKNRVKLL--KECSKLERDESGDNQLRL 165
+L ++ +D + + + VL + +E+
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 166 TEVYDELKSIEADAAEPRARRILAG-------------------LGFTTIYIPSSRVHEI 206
+ EL+ + + G T + H I
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 207 MRTWK-----KTLLVVSHDQSFLNNICTDIIHLD 235
MR +T+++++H S + N II ++
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVME 211
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 104 bits (261), Expect = 6e-26
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L ++T + G + K+N + + L+GP+G GK+T L ++ G P +G +
Sbjct: 9 LENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 67
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFG 441
I Q ++P T E + +K+ P ++ ++ +
Sbjct: 68 RDVTYLPPKDRNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
+ + P LSGGQ+ RVA+A + PD+L++DEP +NLD + A+ IK Q
Sbjct: 126 IEELLNRYP-AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 502 G----VILVSHDERLIRE 515
I V+HD+
Sbjct: 185 KLKVTTIYVTHDQVEAMT 202
Score = 60.9 bits (148), Expect = 4e-11
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 33/213 (15%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 117
V++K+EN + + NL I G L+GP+G GKTT LR IA L P+
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGR 62
Query: 118 LLYCEQEVEASD-----------DSAVNIVLSADKN--RVKLLKECSKLERDESGDNQLR 164
+ + +++V AV ++ +N +K+ K E D+
Sbjct: 63 IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 165 LTEVYDELKSIEAD---------------AAEPR---ARRILAGLGFTTIYIPSSRVHEI 206
L ++ + L A EP L+ L + + ++
Sbjct: 123 LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 182
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+ K T + V+HDQ + I ++ +L
Sbjct: 183 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 102 bits (257), Expect = 1e-25
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 34/212 (16%)
Query: 338 LHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
L +VT Y G+ L+ VN + V+++GP+G GKST LN++ P +GE
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 393 -------------LRKSPRLRIGKFDQHSGEHLFPDDTPCE------YLMKLFNLPYEKS 433
L K R +IG Q +L P T E + E+
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 434 RRQL----GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
R++ M L LSGGQ+ RVA+A NNP I++ D+PT LD ++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 490 DALAEAIKNYQG----GVILVSHDERLIRETD 517
+ + + +K V++V+HD + R +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
Score = 47.5 bits (113), Expect = 1e-06
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
IK++N + + + + N NL I G ++GP+G GK+T+L I L P+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTE 59
Query: 116 IDLLYCEQEVEASDDSAV 133
++ + DD +
Sbjct: 60 GEVYIDNIKTNDLDDDEL 77
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 101 bits (254), Expect = 2e-25
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK------G 391
+ D++ GY K +LE++ ++ + V GPNGIGK+T L + L P K G
Sbjct: 5 IRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYA 446
+ +I + + +YL + +L K + L +
Sbjct: 63 VPITKVKGKIFFLPEEIIV--PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK 120
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVI 504
+ +LS G RV LA L N +I +LD+P +D +S + ++I + G++
Sbjct: 121 K--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 505 LVSHDERL 512
++S E L
Sbjct: 179 IISSREEL 186
Score = 51.5 bits (123), Expect = 4e-08
Identities = 28/197 (14%), Positives = 67/197 (34%), Gaps = 26/197 (13%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI--- 116
+++ + S+ + + I G GPNG GKTTLL+ I+T + I
Sbjct: 3 LEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
Query: 117 ---------DLLYCEQEVEASDDSAVNIVLSA-------DKNRVKLLKECSKLERDESGD 160
+ + +E+ +V L A N+ +++ +E +
Sbjct: 62 GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK 121
Query: 161 NQLRLTEVYDELKSIEADAAEPRARRIL----AGLGFTTIYIPSSRVHEIMRTWKKTLLV 216
L++ + + +L + + + + EI++ ++
Sbjct: 122 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 217 VSHDQSFLNNICTDIIH 233
+ S+ + + +H
Sbjct: 182 SREELSYCDVN--ENLH 196
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 100 bits (250), Expect = 2e-24
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 338 LHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L ++T + G L V+ + ++G +G GKST + + P +G +
Sbjct: 4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 395 --------------KSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ- 436
R +IG QH +L T + ++L N P ++ +R+
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 437 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493
L + GL + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++
Sbjct: 122 TELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 494 EAIKNYQGG----VILVSHDERLIRE 515
E +K+ ++L++H+ +++
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKR 206
Score = 52.2 bits (125), Expect = 4e-08
Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
IK+ N F + ++ +N +L + +G+ YG++G +G GK+TL+R + L P+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTE 59
Query: 116 IDLLYCEQEVEASDDSAV------------NIVLSADKNRVKLLKEC------SKLERDE 157
+L QE+ +S + + L + + + K E
Sbjct: 60 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 158 SGDNQLRLTEVYDELKSIEADAAEPRARRI-----------LAGLGFTTIYIPSSRVHEI 206
L L + D+ S ++ + + +R+ + T + + I
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 207 M-------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+ R T+L+++H+ + IC + + +L
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 99 bits (249), Expect = 2e-24
Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 22/202 (10%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
VL + + Y G ++ ++ + V L+G NG GK+T L+ + G + KG++
Sbjct: 5 IVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 394 RKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ------L 437
+ R+G G +FP+ T E LM +K +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 438 GMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
+F L + LSGG++ +A+ ++ P +L++DEP+ L + + E I
Sbjct: 124 SLFPRLKERLKQLG-GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 497 KNYQG---GVILVSHDERLIRE 515
+ ++LV + +
Sbjct: 183 QKINQEGTTILLVEQNALGALK 204
Score = 55.7 bits (134), Expect = 3e-09
Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 33/208 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT------------ 107
++V++ + + +L++ G+ L+G NG GKTT L IA
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 108 RALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN-----RVKLLKECSKLERDESGDNQ 162
++ + + L+ +N + KE K + +
Sbjct: 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126
Query: 163 LRLTEVYDELKS------------IEADAAEPR---ARRILAGLGFTTIYIPSSRVHEIM 207
RL E +L A + P+ GL + + +I
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 208 RTWKKTLLVVSHDQSFLNNICTDIIHLD 235
+ T+L+V + + L+
Sbjct: 187 QE-GTTILLVEQNALGALKVAHYGYVLE 213
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 100 bits (249), Expect = 2e-24
Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 35/214 (16%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+L ++ + G L+ V+ ++ ++GPNG GKST +N++ G L ++G +
Sbjct: 4 ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 395 ----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-------------- 430
+ G + T E L+ P
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 431 ------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
EK+ + L L +LSGGQ V + + NP ++++DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 485 DIESIDALAEAIKNYQG---GVILVSHDERLIRE 515
+ + + +++ H ++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 215
Score = 53.8 bits (129), Expect = 1e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN + ++ + G ++GPNG GK+TL+ I
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 51
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 99.2 bits (247), Expect = 4e-24
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--------- 388
L DV + G + +++ + + L+GP+G GK+T L ++ G P
Sbjct: 6 LVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64
Query: 389 ------NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ--- 436
KG I Q L+P T + + KL +P ++ ++
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 437 -LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
+ GL + P R+LSGGQ+ RVAL + P + ++DEP +NLD + +
Sbjct: 123 VAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181
Query: 496 IKNYQGG----VILVSHDERLIRE 515
+K Q I V+HD+
Sbjct: 182 LKKLQRQLGVTTIYVTHDQVEAMT 205
Score = 60.3 bits (146), Expect = 7e-11
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 51/223 (22%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+++ + V +L++ G L+GP+G GKTT LR IA L PS +
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIY 61
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
++ V + I + + ++ + L + + +L+ +
Sbjct: 62 IGDKLVADPEK---GIFVPPKDRDIAMVFQSYALYPHMTVYDN---IAFPLKLRKVPRQE 115
Query: 180 AEPRARRILAGLGFTTIY--IPSS-------RV--------------------------- 203
+ R R + LG T + P RV
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 204 -------HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
++ R T + V+HDQ + I ++ L
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 98.8 bits (246), Expect = 6e-24
Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 33/217 (15%)
Query: 332 PPPVLG---LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
P + G DV+F YP ++L+ + F L ALVGPNG GKST LL+
Sbjct: 5 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 387 TPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----- 430
P G+L + ++ Q +F L P
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP--QVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 431 ---EKSRRQLGMFGLPSYAHTI---PIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
KS + GLP T LSGGQ+ VALA + P +LILD+ T+ L
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 485 DIES----IDALAEAIKNYQGGVILVSHDERLIRETD 517
D S L E+ + Y V+L++ L+ + D
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQAD 219
Score = 54.9 bits (132), Expect = 5e-09
Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 44/218 (20%)
Query: 59 DIKVENFSLS---AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
++ ++ S + V + + G LVGPNG GK+T+ + L P+
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ--NLYQPTG 68
Query: 116 IDLL-------------------YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERD 156
LL QE + S + + + + + +
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 128
Query: 157 ESGDNQLRLTEVYDELKS----------------IEADAAEPRAR---RILAGLGFTTIY 197
+ L + YD A +P + L +
Sbjct: 129 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 198 IPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
++E + +++L+++ S + I+ L+
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLE 225
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 95.7 bits (238), Expect = 9e-23
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 38/215 (17%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--- 392
L + D+ Y GG +L+ V+ ++++G +G GKSTFL + P++G
Sbjct: 3 LHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61
Query: 393 ---------------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFN 427
+ R R+ QH +L+ T E +M ++
Sbjct: 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLG 119
Query: 428 LPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
L +R + L G+ A LSGGQ+ RV++A PD+L+ DEPT+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 484 LDIESIDALAEAIKNYQG---GVILVSHDERLIRE 515
LD E + + ++ +++V+H+ R
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 214
Score = 64.1 bits (156), Expect = 4e-12
Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 49/227 (21%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ V + G E+ +LQ +G ++G +G GK+T LR I L PS ++
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGAII 60
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLR----LTEVYDELKSI 175
Q + D + ++ L + + + + + + + E ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 176 EADAAEPRARRILAGLGFT-------------------------------------TIYI 198
A RA + LA +G T +
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 199 PSSRVHEIMRTWK------KTLLVVSHDQSFLNNICTDIIHLDMKKL 239
V E++R + KT++VV+H+ F ++ + +I L K+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 94.3 bits (234), Expect = 2e-22
Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 24/198 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----- 392
+ D+ G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G
Sbjct: 5 VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 63
Query: 393 -----LRKSPRLRIGKFDQHSGEHLFPDDTP---CEYLMKLFNLPY----EKSRRQLGMF 440
R I + +G + + ++ + E R +
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL + S G ++ +A + NP + ILDEPT+ LD+ + + + +K
Sbjct: 122 GLGEKIKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180
Query: 501 ---GGVILVSHDERLIRE 515
+++ SH+ +
Sbjct: 181 QEGLTILVSSHNMLEVEF 198
Score = 54.2 bits (130), Expect = 7e-09
Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ V++ E+ + +I G +GL+GPNG GKTT LR I+T L PSS +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVT 60
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
V + + L E + R+ G LR + +
Sbjct: 61 V--------FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF---VAGFYASSSSE 109
Query: 180 AEPRARRILAGLGFT 194
E R G
Sbjct: 110 IEEMVERATEIAGLG 124
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 91.9 bits (228), Expect = 1e-21
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 24/198 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L +VT + G V+ + +N + V VGP+G GKST L ++ G T G+L
Sbjct: 3 LQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 61
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFG 441
+G Q L+P + E + +KL E ++ +
Sbjct: 62 KRMNDTPPAERGVGMVFQS--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN 498
L P + LSGGQ+ RVA+ + P + +LDEP +NLD + +
Sbjct: 120 LAHLLDRKP-KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 499 YQGG-VILVSHDERLIRE 515
G +I V+HD+
Sbjct: 179 RLGRTMIYVTHDQVEAMT 196
Score = 61.5 bits (149), Expect = 2e-11
Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 33/211 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N + + V + + NL I G VGP+G GK+TLLR IA L +S DL
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLF 58
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVK-------------LLKECSKLERDESGDNQLRLT 166
E+ + + + + + + L K ++ + +
Sbjct: 59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 167 EVYDELKS---------------IEADAAEPR---ARRILAGLGFTTIYIPSSRVHEIMR 208
++ L AEP L+ L + + +
Sbjct: 119 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 209 TWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+T++ V+HDQ + I+ LD ++
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 90.4 bits (224), Expect = 3e-21
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 28/202 (13%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
V+ L DV L ++ + + LVGPNG GKST L + G +T KG ++
Sbjct: 3 VMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLGMFGLP 443
+ +L + + + YL + E G L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 116
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALAEAI 496
LSGG+ RV LA + L +L+LDEP N+LD+ AL + +
Sbjct: 117 DKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 175
Query: 497 KNYQG---GVILVSHDERLIRE 515
+++ SHD
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLR 197
Score = 55.3 bits (133), Expect = 3e-09
Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 41/217 (18%)
Query: 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
S+ +++++ + S + + ++ +G LVGPNG GK+TLL +A
Sbjct: 1 SIVMQLQDVAESTR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKG 53
Query: 117 DLLYCEQEVEASDDSAVNIV-------------LSADKNRVKLLKECSKLERDESGDNQL 163
+ + Q +EA + + + + ++ E L
Sbjct: 54 SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL 113
Query: 164 RLTEVYDELKSIEADAAEPR---ARRILAGLGFT------------TIYIPSSRVHEIMR 208
L + + + R A +L + ++ + +
Sbjct: 114 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173
Query: 209 T------WKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+++ SHD + L K+
Sbjct: 174 ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 86.3 bits (213), Expect = 1e-19
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 338 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
+ +V+ + GKV+ L+ VN ++ R ++GP+G GK+TF+ ++ G P+ GEL
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 395 -----------KSPRLR-IGKFDQHSGEHLFPDDTPCEYL---MKLFNLPY----EKSRR 435
P R IG Q L+P+ T E + + + ++
Sbjct: 66 DRLVASNGKLIVPPEDRKIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDAL 492
+ + + P R+LSG Q+ RVALA + +P +L+LDEP +NLD +S AL
Sbjct: 124 VAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 493 AEAIKNYQGG-VILVSHDERLIRE 515
+ +++ G +++VSHD I
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFA 206
Score = 59.3 bits (143), Expect = 2e-10
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 40/220 (18%)
Query: 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
V I V+N S K V N N+ I +G R+G++GP+G GKTT +R IA L +PS+
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPST 59
Query: 116 IDLLYCEQEVEASD----------------DSAVNIVLSADKNRVKLLKEC--SKLERDE 157
+L + ++ V ++ A+ L+A +N L SK E +
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 158 SGDNQLRLTEVYDELKSIEADAAEPRARRI------LAGLGFTTIYIPSSRV-------- 203
+ ++ +++ L + + + +R+ + + P S +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 204 ----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
E+ TLLVVSHD + + I + L KL
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 79.7 bits (196), Expect = 2e-17
Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 22/198 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
++ + ++ + L+ ++ ++ ++GP G GK+ FL L+ G P+ G +
Sbjct: 1 MIEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFG 441
+ I Q+ LFP + L + ++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQN--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN 498
+ P LSGG++ RVALA + NP IL+LDEP + LD E+ + +
Sbjct: 117 IEHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 499 YQG-GVILVSHDERLIRE 515
V+ ++HD+ R
Sbjct: 176 KNKLTVLHITHDQTEARI 193
Score = 57.4 bits (138), Expect = 7e-10
Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 33/209 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I++E+ S K L N +L++ SG + ++GP G GKT L IA +P S +L
Sbjct: 2 IEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRIL 58
Query: 120 YCEQEVEA-----------SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV 168
++V + ++ ++ KN ++ K++ + + R ++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK-KIKDPKRVLDTARDLKI 117
Query: 169 YDELKSIEADAAEPRARRI------------------LAGLGFTTIYIPSSRVHEIMRTW 210
L + +R+ L+ L T + + +
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 211 KKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
K T+L ++HDQ+ + I + KL
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKL 206
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 73.1 bits (178), Expect = 1e-15
Identities = 21/186 (11%), Positives = 52/186 (27%), Gaps = 14/186 (7%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
++ + G G+GK+T + + L + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 424 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
K F + + + A E + ++I+DE
Sbjct: 62 KFFTSKKLVGSYGVNV----------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKM 111
Query: 484 LDI--ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFN-GDFDDYRE 540
+ D + + + + V+ + E+ L + + + D E
Sbjct: 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVK-EIRRLPGAVLIELTPENRDVILE 170
Query: 541 KLLTSL 546
+L+ L
Sbjct: 171 DILSLL 176
Score = 45.4 bits (106), Expect = 3e-06
Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 9/160 (5%)
Query: 87 RYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASDDSAVNIVLSAD 140
+ + G G GKTTL++ I L + + ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIV-ERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 141 KNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPS 200
K + +L + + + + D + G
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKV-IIIDEIGKMELFSKKFR 119
Query: 201 SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240
V +IM ++ + + +I L L
Sbjct: 120 DLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVLI 158
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 73.9 bits (181), Expect = 2e-15
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIGKFD 405
V+F + + L+GP G GKS FL L+ G + P++GE+R R IG
Sbjct: 18 VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 460
Q LFP + + R + G+ P LSGG++
Sbjct: 77 QD--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQ 133
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRE 515
RVALA + P +L+LDEP + +D+++ L E ++ Q ++ V+HD
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Score = 40.4 bits (94), Expect = 3e-04
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 32/190 (16%)
Query: 76 HNANLQIASGRRY-GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD----- 129
N+ GR Y L+GP G GK+ L IA + P ++ ++
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADITPLPPERRG 71
Query: 130 ------DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 183
D A+ LS +N L+ ++ERD + L A +
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 184 ARRI-LAGLGFTTIYI-----PSSRV------------HEIMRTWKKTLLVVSHDQSFLN 225
+R+ LA + P S V + R + +L V+HD
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 226 NICTDIIHLD 235
+ ++ +
Sbjct: 192 MLADEVAVML 201
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 67.6 bits (163), Expect = 9e-13
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 447 HTIPIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
P+ LSGG++ + A++ +LILDEPT LD E L ++ Y
Sbjct: 272 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 331
Query: 501 ---GGVILVSHDERLIRETDCELWALEKKN 527
VILVSHDE L D + + +N
Sbjct: 332 KKIPQVILVSHDEELKDAAD-HVIRISLEN 360
Score = 33.7 bits (75), Expect = 0.057
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 60 IKVENF-SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ V+NF S S VE NL ++G NG GK++LL I
Sbjct: 6 VTVKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
Score = 31.7 bits (70), Expect = 0.21
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 202 RVHEIMRTWKK---TLLVVSHDQSFLNNICTDIIHLDMK 237
++ IM + K +++VSHD+ + +I + ++
Sbjct: 322 KLITIMERYLKKIPQVILVSHDEELK-DAADHVIRISLE 359
Score = 30.6 bits (67), Expect = 0.58
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 366 ALVGPNGIGKSTFLN 380
++G NG GKS+ L+
Sbjct: 27 LIIGQNGSGKSSLLD 41
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 66.3 bits (160), Expect = 1e-12
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 447 HTIPIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
P+ LSGG++ + A++ +LILDEPT LD E L ++ Y
Sbjct: 195 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 254
Query: 501 G---GVILVSHDERLIRETDCELWALEKKN 527
VILVSHDE L D + + +N
Sbjct: 255 KKIPQVILVSHDEELKDAAD-HVIRISLEN 283
Score = 44.0 bits (102), Expect = 3e-05
Identities = 22/215 (10%), Positives = 56/215 (26%), Gaps = 2/215 (0%)
Query: 66 SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125
++ K + ++ G ++G NG GK++LL I L P I + ++
Sbjct: 5 RVTVKNFRSHSDTVVEFKEGI-NLIIGQNGSGKSSLLDAI-LVGLYWPLRIKDIKKDEFT 62
Query: 126 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 185
+ ++ + + ++ + E + A
Sbjct: 63 KVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAF 122
Query: 186 RILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245
+ R +I + L + +
Sbjct: 123 MEKLIPYNIFLNAIYIRQGQIDAILESAREAALSKIGELASEIFAEFTEGKYSEVVVRAE 182
Query: 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMS 280
+ V + KE + ++I + ++
Sbjct: 183 ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLA 217
Score = 35.1 bits (79), Expect = 0.016
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
E ++G NG GKS+ L+ + L R++ K D+ +
Sbjct: 14 HSDTVVEFK-EGINLIIGQNGSGKSSLLDAILVGLYW-------PLRIKDIKKDEFTKVG 65
Query: 412 LFPDDTPCEYLM 423
+
Sbjct: 66 ARDTYIDLIFEK 77
Score = 35.1 bits (79), Expect = 0.018
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 202 RVHEIMRTWKK---TLLVVSHDQSFLNNICTDIIHLDMK 237
++ IM + K +++VSHD+ + +I + ++
Sbjct: 245 KLITIMERYLKKIPQVILVSHDEELK-DAADHVIRISLE 282
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 43.2 bits (100), Expect = 7e-05
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
EL K+P + ++ + +D P +K P K + +
Sbjct: 285 ELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYL----------- 333
Query: 452 RDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VI 504
SGG+K ALA L + +LDE LDI ++ +A I+ ++ I
Sbjct: 334 ---SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 505 LVSHDERLIRETD 517
++S + ++D
Sbjct: 391 VISLKNTMFEKSD 403
Score = 32.0 bits (71), Expect = 0.22
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 353 EKVNFGLDMESRVALVGPNGIGKSTFL 379
G + +++GPNG GKS +
Sbjct: 16 GVTKVGFGESNFTSIIGPNGSGKSNMM 42
Score = 28.9 bits (63), Expect = 2.0
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 60 IKVENF-SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+++ NF S F +N ++GPNG GK+ ++
Sbjct: 6 LELSNFKSYRGVTKVGFGESNF-------TSIIGPNGSGKSNMM 42
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 37.3 bits (86), Expect = 0.001
Identities = 22/143 (15%), Positives = 37/143 (25%), Gaps = 14/143 (9%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
RV LVG G+ S + + E R + F P+ ++
Sbjct: 2 RVGLVGWRGMVGSVLMQRMVEE--------RDFDLIEPVFFSTSQIGVPAPNFGKDAGML 53
Query: 424 KLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVA-LAELTLNNPDI-LILDEP 480
+ + Y + G K A + + + LD
Sbjct: 54 HDAFDIESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDP- 112
Query: 481 TNNLDIESIDALAEAIKNYQGGV 503
N I + K + GG
Sbjct: 113 VNLKQIL--HGIHHGTKTFVGGA 133
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 37.7 bits (86), Expect = 0.001
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
V LVG GKS+ L + + +G + E D P
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP 57
Score = 26.5 bits (57), Expect = 7.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPS 114
GLVG GK++LL + I
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAHPKIAP 30
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 36.6 bits (83), Expect = 0.003
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
+V + G GKS+ LN L G ++ + R + + G L DT
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Score = 29.7 bits (65), Expect = 0.57
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 85 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
G + + G GK++LL +A R AI + I
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 32
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 35.9 bits (81), Expect = 0.009
Identities = 28/254 (11%), Positives = 67/254 (26%), Gaps = 9/254 (3%)
Query: 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 137
L+ ++G GK+++++ +DL E+ S + +
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQ 81
Query: 138 SADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE-PRARRILAGLGFTTI 196
VK L K ++ G + ++ + A + + +
Sbjct: 82 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIV 141
Query: 197 YIP--SSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYV 254
+ + + + + L L LF + +
Sbjct: 142 LDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFS 201
Query: 255 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSH-----KALKEQARKRVQKDDDDEP 309
+ E E R + + + E + L + + D
Sbjct: 202 TVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFA 261
Query: 310 -KELLEKPREYIVK 322
+ LE ++ I+K
Sbjct: 262 INQTLEYAKKLILK 275
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 33.8 bits (76), Expect = 0.021
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
R+ +VG +GKST LN L E ++ + R I + G DT
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 56
Score = 27.2 bits (59), Expect = 3.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 87 RYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
R +VG GK+TLL + AI + I
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDI 31
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.2 bits (77), Expect = 0.021
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 122
R L GP G GKTTL+ + + +D Y E
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38
Score = 32.3 bits (72), Expect = 0.11
Identities = 21/175 (12%), Positives = 46/175 (26%), Gaps = 18/175 (10%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
V L GP G+GK+T ++ L + + ++
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGV------PVDGFYTEEVRQGGRRIGFDVVTLSGT 57
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG-GQKARVALAELTLNNPDILILDEPTNN 483
L G + + + + + ++DE
Sbjct: 58 RGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKM 117
Query: 484 -LDIESIDALAEAIKNYQGGVILVSHD----------ERLIRETDCELWALEKKN 527
L + + G +IL + E + D +++ + K+N
Sbjct: 118 ELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKEN 172
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 33.8 bits (76), Expect = 0.031
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
+ V LVG +GKST L+++ + +G + G D P
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLP 57
Score = 26.0 bits (56), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAI 112
GLVG GK+TLL +++ I
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKPKI 28
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.8 bits (76), Expect = 0.034
Identities = 20/192 (10%), Positives = 47/192 (24%), Gaps = 23/192 (11%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 149
+VG GKT + + + I + + R ++K
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTR------------------EFNVGQYRRDMVKT 48
Query: 150 CSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRT 209
E K A + + G ++ ++ E
Sbjct: 49 YKSF-----EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAM 103
Query: 210 WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK 269
+ F+ +IC D + + G+ + + ++ + E E
Sbjct: 104 IFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYEN 163
Query: 270 QIREMKSQGMSK 281
+ +
Sbjct: 164 SYESLDEEQDRD 175
Score = 27.6 bits (60), Expect = 3.0
Identities = 21/176 (11%), Positives = 46/176 (26%), Gaps = 11/176 (6%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL----RIGKFDQHSGEHLFPDDTPCE 420
+ +VG GK+ L L + R + + + + E
Sbjct: 5 IVMVGLPARGKTYISKKLTRYL----NFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 60
Query: 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
+K+ + + F H + ++ R + N E
Sbjct: 61 EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE- 119
Query: 481 TNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536
+ + A A ++ G V+ D E + + + + D
Sbjct: 120 -SICVDPEVIA-ANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQD 173
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 34.6 bits (77), Expect = 0.034
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 453 DLSG---GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV-ILVSH 508
L+ + +LA L N + LD N L I L E+++ + LV +
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434
Query: 509 DERLIRETDCELWALEKKN 527
D E + L ALEK
Sbjct: 435 DIYWSEEMEDRLQALEKDK 453
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.4 bits (75), Expect = 0.038
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
+L K+ D E R+ L+G + GK+T L L E
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
Score = 26.8 bits (58), Expect = 5.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
L+G + GKTTLL+ +A+
Sbjct: 21 LLGLDNAGKTTLLKQLAS 38
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.1 bits (74), Expect = 0.046
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 117
+I + +VG GK+TL I + A+ S I
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP 40
Score = 31.6 bits (70), Expect = 0.17
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
+VA+VG +GKST N + + + + R + G DT
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.8 bits (73), Expect = 0.053
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI-GKFDQHSGEHLFPDDTPCE 420
+A+VG +GKST LN L G+ ++ R RI G + + + ++ D
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 64
Score = 28.5 bits (62), Expect = 1.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPSSI 116
+VG GK+TLL + + ++I S
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRK 36
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.8 bits (73), Expect = 0.086
Identities = 22/212 (10%), Positives = 46/212 (21%), Gaps = 10/212 (4%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 141
I +G + G GKT + +A +P + ++ + L A
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 142 NRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPS- 200
R L + S + + +
Sbjct: 79 ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 138
Query: 201 -------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY 253
+ +R + N + + M K
Sbjct: 139 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHA 198
Query: 254 VQKRKELTKEYELQEKQIREMKSQGMSKEKAE 285
R L K + + + S + + +A
Sbjct: 199 STTRLYLRK-GRGETRICKIYDSPCLPEAEAM 229
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.9 bits (74), Expect = 0.087
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
LL + + ++G G+GKS+ +N + GE
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 55
Score = 27.1 bits (59), Expect = 6.3
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
+EL N + + ++G G GK++ + I + S
Sbjct: 19 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF 63
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 32.1 bits (72), Expect = 0.095
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 88 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 134
+ +VG GKTTL+ A+ + +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGV 50
Score = 27.9 bits (61), Expect = 2.1
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 6/90 (6%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+VG GK+T + R+ R+ K H GE P+ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAV------REGWRVGTVKHHGHGGEPARPEGVDSVRHER 57
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
+ L L +
Sbjct: 58 AGAVATAVEGDGLLQLHLRRPLWRLDDVLA 87
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.3 bits (72), Expect = 0.099
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
+ + + GP GK++ L LL +
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTD 26
Score = 26.9 bits (58), Expect = 5.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+ GP GKT+LL + T
Sbjct: 8 IAGPQNSGKTSLLTLLTTD 26
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 32.6 bits (73), Expect = 0.10
Identities = 23/234 (9%), Positives = 50/234 (21%), Gaps = 18/234 (7%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLK 148
L G GK T I + A + + A
Sbjct: 5 FLSGVKRSGKDTTADFIMSNYSA------------VKYQLAGPIKDALAYAWGVFAANTD 52
Query: 149 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMR 208
++ G + R E L +E +A L G + +
Sbjct: 53 YPCLTRKEFEGIDYDR--ETNLNLTKLEVITIMEQAFCYLNGKSPIKGV---FVFDDEGK 107
Query: 209 TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY-VQKRKELTKEYELQ 267
+ N + M+ L + + + ++
Sbjct: 108 ESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDYLDKFNSG 167
Query: 268 EKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 321
++ + A R + + D L + + ++
Sbjct: 168 YDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQKSNDTHITEAGLPIRDGDLVI 221
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.9 bits (71), Expect = 0.10
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
E R+ ++G + GK+T L GE
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGE 25
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 32.3 bits (72), Expect = 0.13
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 89 GLVGPNGHGKTTLLRHI 105
VG G GKTTL
Sbjct: 4 VFVGTAGSGKTTLTGEF 20
Score = 27.6 bits (60), Expect = 3.5
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
V VG G GK+T L N ++ + +G P + +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNY---------KVAYVNLDTGVKELPYEPSIDVRE- 52
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
+ + P+ A L + D +++D P
Sbjct: 53 -----FVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQME 107
Query: 485 DIESIDALAEAIKNYQGGVILVSHD 509
+ ++N +++ D
Sbjct: 108 TFLFHEFGVRLMENLPYPLVVYISD 132
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.9 bits (71), Expect = 0.14
Identities = 27/206 (13%), Positives = 60/206 (29%), Gaps = 7/206 (3%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATR-ALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
+ GR + G +G GKT + + E+ + +A +
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 82
Query: 141 KNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPS 200
K + D G + ++ ++ I + RARR+ T+++
Sbjct: 83 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSID-SVTSVFQQY 141
Query: 201 SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260
+ R + + + T + +++
Sbjct: 142 DASSVVRRELFRLVARLKQ-----IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 196
Query: 261 TKEYELQEKQIREMKSQGMSKEKAER 286
E E + + + +K +G S K E
Sbjct: 197 VLEGERRRRTLEILKLRGTSHMKGEY 222
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.6 bits (70), Expect = 0.15
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
E R+ ++G +G GK+T L L+
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVG 28
Score = 26.2 bits (56), Expect = 9.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
++G +G GKTT+L +
Sbjct: 10 ILGLDGAGKTTILYRLQV 27
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 31.7 bits (70), Expect = 0.15
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 363 SRVALVGPNGIGKSTFLNLLKGE 385
+ V +VG +GKST N L +
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKK 23
Score = 29.3 bits (64), Expect = 0.83
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPSSI 116
+VG GK+TL + + AI
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDE 31
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.5 bits (70), Expect = 0.15
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 89 GLVGPNGHGKTTLLRHIATR 108
+G GKTTLL+ +
Sbjct: 6 AFAAWSGTGKTTLLKKLIPA 25
Score = 30.7 bits (68), Expect = 0.28
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
+A +G GK+T L L L + R + K H +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALC------ARGIRPGLIKHTHHDMDV 45
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 31.2 bits (69), Expect = 0.17
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 365 VALVGPNGIGKSTFLNLLKGE 385
VA+VG +GKST LN L G
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
Score = 29.3 bits (64), Expect = 0.86
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123
+VG GK+TLL ++ +A S ++
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR 43
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.4 bits (70), Expect = 0.18
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ L+G +G+G+ N L + P++ R K D+ +G++ +
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKH-PDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDI 64
Query: 425 LFNLPYEKSRRQLGMFGLPSY 445
N E + M+G
Sbjct: 65 SNNEYLEYGSHEDAMYGTKLE 85
Score = 28.3 bits (62), Expect = 1.9
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
L+G +G G+ + + T+
Sbjct: 8 LLGAHGVGRRHIKNTLITK 26
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 31.2 bits (69), Expect = 0.19
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 365 VALVGPNGIGKSTFLNLLKGE 385
+ G + +GKST + L G+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 31.6 bits (70), Expect = 0.21
Identities = 16/152 (10%), Positives = 33/152 (21%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 141
I S G GKT L + A + ++ + + +
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 93
Query: 142 NRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPSS 201
E+ D + + + A I+ + S
Sbjct: 94 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 153
Query: 202 RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIH 233
R R K ++ + +
Sbjct: 154 RGELAERQQKLAQMLSRLQKISEEYNVAVFVT 185
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 31.5 bits (71), Expect = 0.24
Identities = 13/84 (15%), Positives = 22/84 (26%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
RV + GP+G+GK+T LL + + P
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQG 65
Query: 424 KLFNLPYEKSRRQLGMFGLPSYAH 447
++ + YA
Sbjct: 66 EISAGDAAVVMTSAQITMGMPYAV 89
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.25
Identities = 8/66 (12%), Positives = 19/66 (28%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
++ +G + GK+T L++LK + +
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARR 72
Query: 422 LMKLFN 427
+ K +
Sbjct: 73 VWKNYL 78
Score = 26.2 bits (56), Expect = 8.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 LVGPNGHGKTTLLRHIA 106
+G + GKTTLL +
Sbjct: 18 FLGLDNAGKTTLLHMLK 34
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.8 bits (68), Expect = 0.27
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
++ +G + GK+T L++LK +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKND 23
Score = 26.6 bits (57), Expect = 5.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 90 LVGPNGHGKTTLLRHIATRALAI 112
+G + GKTTLL + LA
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLAT 27
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 30.7 bits (68), Expect = 0.29
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 357 FGLDMESRVALVGPNGIGKSTFLNLLKGE 385
+G + E R+ ++G +G GK+T L L+
Sbjct: 12 WGSNKELRILILGLDGAGKTTILYRLQIG 40
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 30.9 bits (70), Expect = 0.33
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109
+ A G + GL G G GKT L+ +
Sbjct: 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 30.7 bits (69), Expect = 0.41
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
R+ L G GIGK+T
Sbjct: 7 RIYLDGAYGIGKTTAAEEFLHHF 29
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 30.3 bits (67), Expect = 0.43
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKG--ELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
E ++ L+G GKST + +K G E + + K G+
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 61
Query: 420 EY 421
+
Sbjct: 62 CF 63
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 30.8 bits (68), Expect = 0.45
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 366 ALVGPNGIGKSTFL---NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 422
A+VGPNG GKS + + GE + K R +G P
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFGEQSK------KELRASEKFDMIFAGSENLPPAGSAYVE 81
Query: 423 MKLFNLPYE-KSRRQLGMFGLPSY 445
+ E R+L G +Y
Sbjct: 82 LVFEENGEEITVARELKRTGENTY 105
Score = 28.5 bits (62), Expect = 2.0
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+ ++ F + + + + +VGPNG GK+ ++
Sbjct: 6 LYLKGFKSFGRPSLIGFSDRVTA-------IVGPNGSGKSNII 41
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
VA++G GKS +N L T R+ ++G +Q +P
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68
Query: 422 LMKLFNLPYEKSRRQLGMFGLPSYAH 447
+ + + + + + A
Sbjct: 69 RYIDYAVRHSHKIAFIDTDFITTQAF 94
Score = 28.1 bits (61), Expect = 2.4
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATR 108
+ ++G GK+ L+ +A
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAV 30
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.0 bits (66), Expect = 0.51
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 85 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
GR L GP+ GK+T++R + R + S+
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
Score = 28.8 bits (63), Expect = 1.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTP 388
V L GP+ +GKST + L+ +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPN 28
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 30.5 bits (68), Expect = 0.51
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS-ADKNRVKLLK 148
++GP G GKT + R +A + P VEA+ + V V D L
Sbjct: 54 MIGPTGVGKTEIARRLA-KLANAPFIK--------VEATKFTEVGYVGKEVDSIIRDLTD 104
Query: 149 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 184
KL R + E E + ++A +
Sbjct: 105 SAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKN 140
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.9 bits (66), Expect = 0.52
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 84 SGRRYGLVGPNGHGKTTLLRHIATR 108
G L G G GK+T+ +A
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANL 27
Score = 28.4 bits (62), Expect = 1.6
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 360 DMESR-VALVGPNGIGKSTFLNLLKGEL 386
D+ + L G G GKST L
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLP 28
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 30.1 bits (66), Expect = 0.55
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 364 RVALVGPNGIGKSTFLNLLKG 384
+AL G + +GKS+F+N L
Sbjct: 25 EIALAGRSNVGKSSFINSLIN 45
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.56
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
V L GP+G GKST L L E + S R + + G+ +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEH-SSIFGFSVSHTTRNPRPGEEDGKDYYFVTREM 56
Score = 28.4 bits (62), Expect = 2.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
L GP+G GK+TLL+ +
Sbjct: 5 LSGPSGAGKSTLLKKLFQE 23
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.7 bits (65), Expect = 0.56
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 422
++ +VG +GKS+ + KG T + + L L DT +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 423 MKLFNLPY 430
Y
Sbjct: 64 FDAITKAY 71
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 30.3 bits (68), Expect = 0.56
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
R+ L G GIGKST ++
Sbjct: 8 RIYLDGVYGIGKSTTGRVMASAA 30
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.7 bits (65), Expect = 0.57
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
E + LVG GK+TF+N++
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASG 25
Score = 28.5 bits (62), Expect = 1.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
LVG GKTT + IA+
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN-KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
+V L+G G+GKS+ + ++ PN + S + ++ + L D E
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65
Query: 422 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 452
L + Y S + ++ + ++
Sbjct: 66 FRALAPMYYRGSAAAIIVYDITKEETFSTLK 96
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.1 bits (66), Expect = 0.58
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRA 109
+ +G L G GK+ L +A
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTC 58
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 263
Score = 29.9 bits (66), Expect = 0.68
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 170 DELKSIEADAAEPRARRILAGLGFTTIYIPSS-RVHEIMRTWKKTLLVVSHDQSFLNNIC 228
D+L E +A P +Y PS ++++ + DQ LN
Sbjct: 112 DDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFF 171
Query: 229 TDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 263
D++K + N + +
Sbjct: 172 NSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 206
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 29.8 bits (65), Expect = 0.68
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 364 RVALVGPNGIGKSTFLNLLKG 384
VA G + GKS+ LN L
Sbjct: 18 EVAFAGRSNAGKSSALNTLTN 38
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 0.72
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
R+ +VG + GK+T L LK
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG 23
Score = 26.2 bits (56), Expect = 8.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
+VG + GKTT+L +
Sbjct: 5 MVGLDAAGKTTILYKLKL 22
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.9 bits (66), Expect = 0.79
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDL-LYCEQEVEASDDSAVNIVLSADKNR----- 143
L G G GKT+L I ID + +Q + +
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNR 96
Query: 144 --VKLLKECSKLERDESGDNQLRLTEVYDEL 172
++ S + + R T+V +
Sbjct: 97 MTEAIISRLSDQGYNLVIEGTGRTTDVPIQT 127
Score = 26.5 bits (57), Expect = 8.4
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 365 VALVGPNGIGKSTFLNLLKGEL 386
L G G GK++ + + E
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEET 56
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.9 bits (66), Expect = 0.83
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 18/163 (11%)
Query: 347 GGKVLLEKVNFGLDMESR-VALVGPNGIGKSTFLNLLKGEL---------TPNKGELRKS 396
+V + V D E R + + G G GKS L L G++
Sbjct: 34 AKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM--- 90
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 456
+ KF + L P D + + + ++ + +P T + +
Sbjct: 91 ----LSKFGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPR-GKTDEAEEWAS 145
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
+ + L + E + I + D L ++
Sbjct: 146 YGRLLLRETAKKLALIGTPSMRELFHWTTIATFDDLRGFLEGT 188
Score = 28.0 bits (61), Expect = 3.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSI 116
+ G G GK+ LLR +A L +
Sbjct: 55 VNGATGTGKSVLLRELAYTGLLRGDRM 81
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 0.87
Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 10/223 (4%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL----LYCEQEVEASDDSAVNIVL 137
I + + G G GKT L +A P L ++ + E + I
Sbjct: 33 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 92
Query: 138 SADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIY 197
+ + ++LK S L + + D++K + + + +
Sbjct: 93 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 152
Query: 198 IPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK-----KM 252
+ L H + L +I + + + + G+ T
Sbjct: 153 YIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 212
Query: 253 YVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKE 295
R L K + ++ R + + + + +A + K +++
Sbjct: 213 SATLRVYLRK-GKGGKRIARLIDAPHLPEGEAVFSITEKGIED 254
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 29.9 bits (66), Expect = 0.87
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 192 GFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFL-NNICTDIIHLDMKKLFYYKGNFTLFK 250
G T + S V + R Q NN + +D K F+Y + + K
Sbjct: 237 GGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTK 296
Query: 251 KMY--VQKRKELTKE 263
Y + R L ++
Sbjct: 297 VDYGDISSRLGLRRK 311
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.5 bits (65), Expect = 0.91
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407
+ + G GKS+ + L N+ + R+ + + + +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 47
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.92
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
LVG G GKTT +A
Sbjct: 15 LVGLQGSGKTTTAAKLALY 33
Score = 27.4 bits (60), Expect = 4.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 365 VALVGPNGIGKSTFLNLL 382
LVG G GK+T L
Sbjct: 13 WFLVGLQGSGKTTTAAKL 30
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.5 bits (65), Expect = 0.94
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126
G G GKT L+ A A L E+
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 67
Score = 26.8 bits (58), Expect = 7.2
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
V+ G L E G +S + G G GK+ +
Sbjct: 8 VSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLV 43
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.2 bits (64), Expect = 0.97
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 361 MESR-VALVGPNGIGKSTFLNLLKGEL 386
M +R + L G + GKS + L+ L
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVL 27
Score = 28.1 bits (61), Expect = 2.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 84 SGRRYGLVGPNGHGKTTLLRHIATR 108
+ R L G + GK+ ++R + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSV 26
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.3 bits (64), Expect = 0.98
Identities = 11/75 (14%), Positives = 20/75 (26%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 141
+ S G G GKT ++ + E + AV I
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 90
Query: 142 NRVKLLKECSKLERD 156
++++ D
Sbjct: 91 RPERIMQMAEHAGID 105
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.8 bits (63), Expect = 1.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
E +V +VG + GK+T L
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMN 38
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 1.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 90 LVGPNGHGKTTLLRHIATRA 109
+VG NG GKTT + +
Sbjct: 11 VVGVNGVGKTTTIAKLGRYY 30
Score = 27.4 bits (60), Expect = 3.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 365 VALVGPNGIGKSTFL 379
V +VG NG+GK+T +
Sbjct: 9 VLVVGVNGVGKTTTI 23
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.7 bits (63), Expect = 1.2
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP-CEY 421
++ ++G + +GK++FL TP + L DT E
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 422 LMKLFNLPYEKSRRQLGMFGLPSYAHT 448
+ Y + + M+ + +
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESF 93
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.9 bits (63), Expect = 1.3
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 81 QIASGR---RYGLVGPNGHGKTTLLRHIA 106
+GR + G G L+ ++
Sbjct: 17 SYQAGRGHHALLIQALPGMGDDALIYALS 45
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 29.3 bits (65), Expect = 1.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 86 RRYGLVGPNGHGKTTLLRHIATRALAIPS 114
R ++ HGK+TL + RA I +
Sbjct: 18 RNMSVIAHVDHGKSTLTDSLVQRAGIISA 46
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.8 bits (63), Expect = 1.4
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
+ + GP+G GKST L L E P+ S R + + +G+ M
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEY-PDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Score = 28.4 bits (62), Expect = 1.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+ GP+G GK+TLL+ +
Sbjct: 6 ISGPSGTGKSTLLKKLFAE 24
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 1.4
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 7/150 (4%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD-KNRVKLLK 148
LV P G GK+ L + A I DLL + +R+ L
Sbjct: 34 LVSPGGAGKSMLALQL---AAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALG 90
Query: 149 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG---LGFTTIYIPSSRVHE 205
E ++ + L + + L +I A +R G + T+
Sbjct: 91 AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEEN 150
Query: 206 IMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
+ + + + + H
Sbjct: 151 ASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 1.4
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+ G G G TT +
Sbjct: 6 VTGVPGVGSTTSSQLAMDN 24
Score = 28.4 bits (62), Expect = 1.7
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
V + G G+G +T L L + E + G +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNL---RKEGVNYKMVSFGSVMFEVAKEEN 49
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.4 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
VA+ G G GKS+F+N L+G
Sbjct: 58 NVAVTGETGSGKSSFINTLRGI 79
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.5 bits (62), Expect = 1.5
Identities = 6/27 (22%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+V ++G +G+GK++ +N + + +
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQ 30
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.0 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 88 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 138
YG +G G GKTTL + R + L + V A + + +LS
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILS 99
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.5 bits (62), Expect = 1.6
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 88 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLL 147
GP G GKT+ + + + L P + E+ ASD+ ++IV KN +L
Sbjct: 36 MLFYGPPGTGKTSTILALT-KELYGPDLMK--SRILELNASDERGISIVREKVKNFARLT 92
Query: 148 KECSKLERDESGDNQLRLTEVYDELKSIEADA 179
E+ + DE S+ ADA
Sbjct: 93 VSKPSKHDLENYPCPPYKIIILDEADSMTADA 124
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 28.6 bits (64), Expect = 1.7
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 20/120 (16%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 136
++ + I G+R ++G GKT++ D V
Sbjct: 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTD---------EKKKLYCIYV 110
Query: 137 LSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTI 196
K ++L + + + ++ T V + A A++ + LA ++
Sbjct: 111 AIGQKRS-----TVAQLVKRLTDADAMKYTIV------VSATASDAAPLQYLAPYSGCSM 159
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 28.4 bits (62), Expect = 1.7
Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 5/127 (3%)
Query: 365 VALVGPNGIGKSTFLNLLKGEL-----TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
V + G G GK+T+LN + E ++ + +
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQS 71
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479
+ + + ++L + ++ + + TL I +
Sbjct: 72 YVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEES 131
Query: 480 PTNNLDI 486
D+
Sbjct: 132 IHVQADL 138
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.6 bits (63), Expect = 1.8
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 14/127 (11%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELR-------------KSPRLRIGKFDQHSGEH 411
+ GP G GKS + L G + +L++ + +++
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKL- 88
Query: 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471
L P + MKL + + G+ R +
Sbjct: 89 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLP 148
Query: 472 PDILILD 478
DI IL+
Sbjct: 149 VDIFILE 155
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 1.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 365 VALVGPNGIGKSTFLNLLKGEL 386
+ G G+GKST L +K L
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEIL 25
Score = 28.4 bits (62), Expect = 1.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+ G G GK+T+L +
Sbjct: 6 VTGIPGVGKSTVLAKVKEI 24
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.1 bits (61), Expect = 1.8
Identities = 5/27 (18%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+V ++G +G+GK++ ++ + + +
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQ 30
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 28.3 bits (62), Expect = 1.8
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ + G + GK+T N+L +L PN L+ R + + +
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHL 65
Query: 425 LFNLPYEKSRRQLGMF 440
LF+ + ++
Sbjct: 66 LFSANRWEIVDKIKKD 81
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 1.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
+V L+G G+GKS + G
Sbjct: 3 KVLLLGAPGVGKSALARIFGGV 24
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 28.6 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 354 KVNFG-LDMESRVALVG-PNGIGKSTFLNLL 382
KV +G + +VG PN +GKSTF +
Sbjct: 1 KVQWGRPGNNLKTGIVGMPN-VGKSTFFRAI 30
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.4 bits (62), Expect = 2.0
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 365 VALVGPNGIGKSTFLNLLKGE 385
V VG GK+ L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG 23
Score = 27.7 bits (60), Expect = 3.0
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 86 RRYGLVGPNGHGKTTLLRHIAT 107
R VG GKT L + T
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLT 22
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.0 bits (61), Expect = 2.0
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
+ ++G G GKS L+ ++ + + L DT
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 28.4 bits (63), Expect = 2.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+A + + G+R ++G GKT +
Sbjct: 59 DAMIPVGRGQRELIIGDRQTGKTAVATDT 87
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 2.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPN 389
E R+ ++G + GK+T L LK +
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVT 39
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 364 RVALVGPNGIGKSTFLNLLKGE 385
RV L+G G+GKST N+ G
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGV 26
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 28.3 bits (62), Expect = 2.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 86 RRYGLVGPNGHGKTTLLRHI 105
R LVG G GKTTL +
Sbjct: 3 RTVALVGHAGSGKTTLTEAL 22
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 28.5 bits (63), Expect = 2.4
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTT---LLRHIATRALAIPSSIDLLYCEQEVE 126
K E Q+ GLV G G L + +P +ID +
Sbjct: 77 KTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGVPGTIDNDIPGTDFT 136
Query: 127 ASDDSAVNIVLSA 139
D+A+N V+ A
Sbjct: 137 IGFDTALNTVIDA 149
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 27.8 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124
G+ G HGKTTL + + +A S+ D L Q+
Sbjct: 9 GIFGHIDHGKTTLSKVL--TEIASTSAHDKLPESQK 42
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 28.1 bits (62), Expect = 2.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 365 VALVGPNGIGKSTFLNLLKG 384
VA+VG GKS +N L G
Sbjct: 35 VAIVGLYRTGKSYLMNKLAG 54
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 2.4
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ +G +G+GK+TFL + P
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPK 33
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 28.0 bits (61), Expect = 2.4
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNK----GELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
+ + G G GK++ ++ EL + G+L K + + D
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR 66
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.8 bits (61), Expect = 2.5
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ L+G +G+GKS L ++ + P+
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPS 30
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.6 bits (60), Expect = 2.7
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 362 ESRVALVGPNGIGKSTFLN-LLKGELTPN 389
+ RVA+ G G+GKS+ + +KG +
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES 30
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.0 bits (61), Expect = 2.7
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 366 ALVGPNGIGKSTFL---NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 422
A+VG NG GKS + G L+ +R S + + + +
Sbjct: 30 AIVGANGSGKSNIGDAILFVLGGLSA--KAMRASRISDLIFAGSKNEPPAKYAEVAIYFN 87
Query: 423 MKLFNLPYEKSRRQL 437
+ P ++ +
Sbjct: 88 NEDRGFPIDEDEVVI 102
Score = 27.6 bits (60), Expect = 4.7
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 60 IKVENF-SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
++++ F S K V + + +VG NG GK+ +
Sbjct: 7 LELKGFKSYGNKKVVIPFSKGFTA-------IVGANGSGKSNIG 43
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 26.3 bits (58), Expect = 2.8
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 246 FTLFKKMYVQKRKELTKEYELQEKQI------REMKSQGMSKEKAE 285
F + +R E+ + L E+Q+ R MK + ++K++A+
Sbjct: 32 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 2.8
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ ++G +G+GKS+ L P
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPE 35
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 27.9 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109
FH +I + LVGP G GKT L R +A A
Sbjct: 32 SRFHEMGARI--PKGVLLVGPPGVGKTHLARAVAGEA 66
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.6 bits (60), Expect = 2.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
LVG G GK+T+ R +A
Sbjct: 6 LVGLPGSGKSTIGRRLAKA 24
Score = 27.3 bits (59), Expect = 3.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
+ LVG G GKST L L
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKAL 25
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.7 bits (61), Expect = 2.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+VG NG GKTT + +A +
Sbjct: 14 MVGVNGVGKTTTIGKLARQ 32
Score = 27.3 bits (60), Expect = 3.8
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 359 LDMESR----VALVGPNGIGKSTFL 379
L++E + + +VG NG+GK+T +
Sbjct: 2 LNVEGKAPFVILMVGVNGVGKTTTI 26
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 27.6 bits (60), Expect = 3.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 361 MESRVALVGPNGIGKSTFLNLLKGEL 386
M + +VG G G +T L L
Sbjct: 1 MTEPIFMVGARGCGMTTVGRELARAL 26
Score = 27.2 bits (59), Expect = 4.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+VG G G TT+ R +A
Sbjct: 7 MVGARGCGMTTVGRELARA 25
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.1 bits (62), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 82 IASGRRYGLVGPNGHGKTTLLRHIA 106
I G+R +V P GKT LL++IA
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIA 64
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.5 bits (60), Expect = 3.3
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ L+G G+GK+ + +G P
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPG 33
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 3.3
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 361 MES-RVALVGPNGIGKSTFLN-LLKGELTPN 389
M++ + +VG +GK+ L +
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSE 31
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.0 bits (62), Expect = 3.4
Identities = 21/202 (10%), Positives = 50/202 (24%), Gaps = 24/202 (11%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLK 148
+ G +G G +T+ +Q AV + D + +
Sbjct: 8 SVTGSSGAGTSTVKHTF----------------DQIFRREGVKAV--SIEGD-AFHRFNR 48
Query: 149 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMR 208
K E D + ++ E E R + VH+
Sbjct: 49 ADMKAELDRRYAAGDATFS-HFSYEANELKELERVFREYGET---GQGRTRT-YVHDDAE 103
Query: 209 TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQE 268
+ + + + + ++ + + ++ E +
Sbjct: 104 AARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 163
Query: 269 KQIREMKSQGMSKEKAERQHSH 290
K R+ ++G + E
Sbjct: 164 KIHRDRATRGYTTEAVTDVILR 185
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 3.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFL 379
K+N + + +VG NG GK+T
Sbjct: 3 KLNVPPEPPFVIMVVGVNGTGKTTSC 28
Score = 27.4 bits (60), Expect = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 90 LVGPNGHGKTTLLRHIATRAL 110
+VG NG GKTT +A +
Sbjct: 16 VVGVNGTGKTTSCGKLAKMFV 36
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.3 bits (59), Expect = 3.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 84 SGRRYGLVGPNGHGKTTLLRHIATR 108
Y L+G +G GK+ + +A +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29
Score = 26.1 bits (56), Expect = 9.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 365 VALVGPNGIGKSTFLNLLKGEL 386
L+G +G GKS + + +L
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQL 30
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.7 bits (60), Expect = 3.4
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 66 SLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
SL+ F + L G NG GK+T +
Sbjct: 6 SLTLINWNGFFARTFDL-DELVTTLSGGNGAGKSTTMAAF 44
Score = 26.9 bits (58), Expect = 6.2
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405
E L G NG GKST + L P+ L G
Sbjct: 24 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATS 67
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.9 bits (61), Expect = 3.4
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
RV + G G+GKST ++ L LT ++ + D S
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAG------HKVAVLAVDPSSTRT 94
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 27.7 bits (61), Expect = 3.5
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 86 RRYGLVGPNGHGKTTLLRHI 105
R G+ GKTT I
Sbjct: 7 RNIGIAAHIDAGKTTTTERI 26
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ LVG G GK+TF+ L GE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKK 31
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 27.7 bits (60), Expect = 3.6
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 482 NNLDIESIDALAEAIKNYQ 500
N + ES +AL + +++++
Sbjct: 339 NAVPYESCEALVQFMEHFK 357
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.3 bits (59), Expect = 3.6
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ L+G +GKS+ + + + N
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAEN 31
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.5 bits (60), Expect = 3.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 85 GRRYGLVGPNGHGKTTLLRHIATR 108
G Y + P+G GK++L++ +
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKT 25
Score = 26.3 bits (57), Expect = 8.8
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 400
+ P+G GKS+ + L ++ S R
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR 40
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.1 bits (59), Expect = 3.7
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 145
VG G GK+T ++ A + + D L Q +S +A L K V
Sbjct: 19 AVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAA----LRQGKRVVI 70
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.6 bits (60), Expect = 3.7
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 13/53 (24%)
Query: 364 RVALVG-PNGIGKSTFLNLLKG-----------ELTPNKGELRKSPRLRIGKF 404
+ +VG PN +GKSTF + + N G +
Sbjct: 2 EIGVVGKPN-VGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKEL 53
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.9 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 364 RVALVGPNGIGKSTFLNLL 382
R+ + G G GKSTFL
Sbjct: 56 RLGVTGTPGAGKSTFLEAF 74
Score = 27.5 bits (60), Expect = 4.3
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 62 VENFSLS--AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
VE+ A +L + R G+ G G GK+T L + +
Sbjct: 29 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Escherichia coli [TaxId: 562]}
Length = 360
Score = 27.8 bits (60), Expect = 3.9
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 482 NNLDIESIDALAEAIKNYQ 500
N + +E + AL + + ++
Sbjct: 338 NAMPLEGVKALTDFMVEFE 356
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 3.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 362 ESRVALVGPNGIGKSTFLNLLKGE 385
E ++ L+G GKSTF+ ++
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII 25
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 27.3 bits (59), Expect = 4.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 365 VALVGPNGIGKSTFLNLLKGEL 386
+A+ G +G GK T + L G
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAF 24
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.1 bits (59), Expect = 4.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+V LVG +G+GK+ L G
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAG 34
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.4 bits (60), Expect = 4.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 364 RVALVGPNGIGKSTFLNLLK-GELTPNKG 391
R+ L+G GKST + ++ + G
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.4 bits (60), Expect = 4.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 365 VALVGPNGIGKSTFLNLL 382
+ LVG G GK+T L
Sbjct: 15 IMLVGVQGTGKATTAGKL 32
Score = 27.0 bits (59), Expect = 4.6
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
LVG G GK T +A
Sbjct: 17 LVGVQGTGKATTAGKLAYF 35
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.0 bits (58), Expect = 4.3
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125
+G G GK+T R + + Y + +
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM 42
Score = 26.2 bits (56), Expect = 7.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 361 MESRVALVGPNGIGKSTFLNLL 382
M+ + +G G GKST+
Sbjct: 1 MKKIILTIGCPGSGKSTWAREF 22
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.9 bits (58), Expect = 4.3
Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ ++G + +GK+ G
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDR 30
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 27.2 bits (59), Expect = 4.4
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 482 NNLDIESIDALAEAIKNYQGGVILVSHD 509
NNL ++I A + + VI +
Sbjct: 1 NNLQRDAIAAAIDVLNE--ERVIAYPTE 26
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.8 bits (59), Expect = 4.5
Identities = 23/118 (19%), Positives = 33/118 (27%), Gaps = 30/118 (25%)
Query: 365 VALVGPNGIGKSTFLNLL-------------------KGELTPNKGELRKSPRLRIG--- 402
V + G +GIGKS L K EL +L + G
Sbjct: 18 VLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIEHLLEIRGLGI 77
Query: 403 -KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-------FGLPSYAHTIPIR 452
G + + L N EK ++G+ TIP+R
Sbjct: 78 INVMTLFGAGSILTEKRLRLNIHLENWHKEKLYDRVGLNEETLRILDTEITKKTIPVR 135
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.2 bits (59), Expect = 4.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
L G G GKTTLLRHI
Sbjct: 8 LTGFLGAGKTTLLRHILN 25
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.8 bits (58), Expect = 4.7
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+V +VG G+GKS + E +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVED 32
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 4.9
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
+V L+G +GK++ + + + + L +L DT +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 4.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 365 VALVGPNGIGKSTFLNLLKGEL 386
+ + G + GK+T N L L
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTL 46
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 4.9
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 362 ESRVALVGPNGIGKSTFLN-LLKGELTPN 389
E ++A+ G G+GKS + L
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE 30
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 364 RVALVGPNGIGKSTFLNLLK 383
++ L+G GKSTFL ++
Sbjct: 4 KILLLGAGESGKSTFLKQMR 23
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 26.7 bits (58), Expect = 5.2
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 515 ETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMV 551
+ A++ + + G + ++ + + E +V
Sbjct: 101 IGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLV 137
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 27.0 bits (60), Expect = 5.4
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 243 KGNFTLFKKMYVQ---KRKELTKEYELQEKQIRE 273
K +FT + + RK+++KE +L+ K+ E
Sbjct: 99 KCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENE 132
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.9 bits (58), Expect = 5.4
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 362 ESRVALVGPNGIGKSTFLN-LLKGELTPN 389
E ++ +VG G+GKS L++
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE 31
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.9 bits (58), Expect = 5.4
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ +VG G+GKS ++ +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSD 34
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.1 bits (58), Expect = 5.5
Identities = 19/180 (10%), Positives = 38/180 (21%), Gaps = 10/180 (5%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 149
L GPNG GK T + ++ D + S K + ++
Sbjct: 38 LYGPNGTGKKTRCMALLES----------IFGPGVYRLKIDVRQFVTASNRKLELNVVSS 87
Query: 150 CSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRT 209
LE S + + LK + I +
Sbjct: 88 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 147
Query: 210 WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK 269
+ + I + + + + + E+
Sbjct: 148 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 207
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 6.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+G G GK+TL R +A
Sbjct: 5 FIGFMGSGKSTLARALAKD 23
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.6 bits (57), Expect = 6.2
Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++A++G +GKS+ ++G+ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDS 32
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 6.2
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ L+G +G+GK+ L +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNST 34
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.5 bits (57), Expect = 6.3
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ +VG + GK+ L+ K N
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPEN 30
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.7 bits (59), Expect = 6.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109
F +I G +VGP G GKT L + IA A
Sbjct: 35 SRFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 26.8 bits (58), Expect = 6.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+V L+G +G+GKS L+ + E
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLE 32
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 6.7
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 361 MESRVALVGPNGIGKSTFLN-LLKGELTPN 389
+ ++ +VG GK+ L K +
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV 30
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 6.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
LVGP G GK+T+ R +A +
Sbjct: 7 LVGPMGAGKSTIGRQLAQQ 25
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 6.9
Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ +G +GK++ + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNT 28
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 26.8 bits (59), Expect = 7.0
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 361 MESRVALVG-PNGIGKSTFLNLL 382
M + +VG PN +GKST N L
Sbjct: 1 MGFKCGIVGLPN-VGKSTLFNAL 22
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.8 bits (58), Expect = 7.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 90 LVGPNGHGKTTLLRHIAT 107
+ G G GK+T +R +A
Sbjct: 33 VFGDRGTGKSTAVRALAA 50
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.4 bits (57), Expect = 7.5
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+V ++G G+GKS + G
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEK 31
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.2 bits (56), Expect = 7.6
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 90 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124
L G GK + R + L
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 45
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.5 bits (57), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 361 MESRVALVGPNGIGKSTFLNLLKGEL 386
M+ + GP G+GKST L +L
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRLAAQL 26
Score = 26.1 bits (56), Expect = 8.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 90 LVGPNGHGKTTLLRHIATR 108
+ GP G GK+T + +A +
Sbjct: 7 ITGPAGVGKSTTCKRLAAQ 25
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.1 bits (56), Expect = 8.2
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+ +VG +GK+ L
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGE 33
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.6 bits (57), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 89 GLVGPNGHGKTTLLRHIATRALAI 112
++G HGKTTLL HI A+A
Sbjct: 9 SVLGHVDHGKTTLLDHIRGSAVAS 32
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 26.9 bits (58), Expect = 8.4
Identities = 30/267 (11%), Positives = 62/267 (23%), Gaps = 18/267 (6%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120
K+ + L H + + A V P I S + L
Sbjct: 209 KLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD 268
Query: 121 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAA 180
+ E + ++ +A + + + + + +
Sbjct: 269 SDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLK 328
Query: 181 EPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240
R + + I + L ++ + + L
Sbjct: 329 ILRENPQVRE---KVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLP 385
Query: 241 YYKGNFT-------LFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKAL 293
F LF L ++++ E + Q + E +
Sbjct: 386 ALDITFVDKRIEKLLFNYRARNFPGTLDYA---EQQRWLEHRRQVFTPEFLQ-----GYA 437
Query: 294 KEQARKRVQKDDDDEPKELLEKPREYI 320
E Q DD E LL+ +Y
Sbjct: 438 DELQMLVQQYADDKEKVALLKALWQYA 464
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.0 bits (56), Expect = 8.7
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+ ++G G+GKS L P
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPV 31
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 26.3 bits (57), Expect = 8.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 86 RRYGLVGPNGHGKTTLLRHI 105
R+ G GK+TL+ +
Sbjct: 10 LRFLTCGNVDDGKSTLIGRL 29
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 8.7
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 249 FKKMY------VQKRKELTKEYELQEKQIREM 274
F KM+ +++K+LT + + Q + RE
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQIRLEREK 125
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.5 bits (57), Expect = 8.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 90 LVGPNGHGKTTLLRHIA 106
+ +G GK+T +R A
Sbjct: 40 VTSGSGMGKSTFVRQQA 56
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.2 bits (56), Expect = 9.0
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
R+ +VG G+GKS ++ +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTD 33
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.0 bits (56), Expect = 9.4
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
+ ++G G+GKS L+ + + +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMAD 32
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.0 bits (56), Expect = 9.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 364 RVALVGPNGIGKSTFLN-LLKGELTPN 389
++ L+G +G+GKS L T +
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTND 34
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.1 bits (56), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 364 RVALVGPNGIGKSTFLNLLKGEL 386
++++ G GKSTF+N+LK
Sbjct: 4 KISIEGNIAAGKSTFVNILKQLC 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.377
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,091,872
Number of extensions: 104462
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 301
Length of query: 568
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 478
Effective length of database: 1,171,896
Effective search space: 560166288
Effective search space used: 560166288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.7 bits)