BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16369
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 52 GDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIR 95
GD E V +++ ++Y +A KFGG+ AGE NG RGY+LT+VIAY+R
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMR 515
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 52 GDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIR 95
GD E V +++ ++Y +A KFGG+ AGE NG RGY+LT+VIAY+R
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMR 515
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 52 GDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIR 95
GD E V +++ ++Y +A KFGG+ AGE NG RGY+LT+VIAY+R
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMR 515
>pdb|1IOA|A Chain A, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus
Vulgaris
pdb|1IOA|B Chain B, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus
Vulgaris
Length = 240
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 9 FFKGNRYLVETSTSYSRPRHYPLTDMRENEKPGIDSFGKPDSHGDPEDVKKNQAKIYSVA 68
F ++ +++ + + S LT + NE P +DS G+ + DP +K + + S
Sbjct: 11 FHTDDKLILQGNATISSKGQLQLTGVGSNELPRVDSLGRA-FYSDPIQIKDSN-NVASFN 68
Query: 69 LKFGGIPAGETNGMRGYMLTFVIAYIRIVPM 99
F I + + Y L F + + P
Sbjct: 69 TNFTFIIRAKNQSISAYGLAFALVPVNSPPQ 99
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes.
pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes
Length = 330
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 41 GIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIA 92
G++S G + DP+ +++ K+Y + I A E M+GYM+ +A
Sbjct: 156 GLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADE---MKGYMIQNNVA 204
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 41 GIDSFGKPDSHGDPEDVKKN 60
G+ + G PDS G PE V KN
Sbjct: 159 GVATLGLPDSPGVPEGVAKN 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,166,712
Number of Sequences: 62578
Number of extensions: 126907
Number of successful extensions: 203
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)