Query psy16369
Match_columns 101
No_of_seqs 108 out of 181
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 19:32:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 98.1 9.5E-07 3.2E-11 74.2 1.4 69 29-98 379-447 (584)
2 4bby_A Alkyldihydroxyacetoneph 97.8 2.2E-06 7.5E-11 72.3 0.1 70 29-99 450-519 (658)
3 1e8g_A Vanillyl-alcohol oxidas 92.4 0.1 3.6E-06 43.0 3.8 54 42-96 349-410 (560)
4 1f0x_A DLDH, D-lactate dehydro 90.4 0.033 1.1E-06 46.8 -1.1 56 41-98 387-448 (571)
5 1hsk_A UDP-N-acetylenolpyruvoy 79.6 1.3 4.5E-05 34.2 3.1 42 41-82 269-311 (326)
6 3r8j_A Heme-binding protein 2; 76.3 5.2 0.00018 29.6 5.5 49 42-94 137-187 (212)
7 2exr_A Cytokinin dehydrogenase 76.3 0.9 3.1E-05 37.2 1.4 54 41-94 309-378 (524)
8 1wvf_A 4-cresol dehydrogenase 73.6 4.4 0.00015 32.8 4.8 35 42-76 318-352 (520)
9 4b0y_A Heme-binding protein 2; 71.8 6.4 0.00022 29.5 5.0 49 42-94 156-206 (227)
10 3pm9_A Putative oxidoreductase 58.0 9.7 0.00033 30.8 3.9 37 38-74 283-319 (476)
11 2gov_A P22HBP, heme-binding pr 43.8 28 0.00096 25.0 4.1 48 42-93 132-181 (195)
12 2ook_A Hypothetical protein; s 38.2 31 0.0011 22.8 3.4 45 53-97 31-85 (127)
13 2l42_A DNA-binding protein RAP 38.0 22 0.00075 24.5 2.6 34 61-94 32-65 (106)
14 2fcr_A Flavodoxin; electron tr 34.7 81 0.0028 21.0 5.1 53 25-78 67-123 (173)
15 3f6r_A Flavodoxin; FMN binding 32.8 31 0.001 22.2 2.6 53 25-79 69-123 (148)
16 1f4p_A Flavodoxin; electron tr 32.6 53 0.0018 20.9 3.7 54 24-78 67-121 (147)
17 2vzf_A NADH-dependent FMN redu 27.1 64 0.0022 22.0 3.6 56 22-78 83-138 (197)
18 4hqo_A Sporozoite surface prot 26.8 30 0.001 24.9 1.9 39 15-53 23-68 (266)
19 1yob_A Flavodoxin 2, flavodoxi 26.7 68 0.0023 21.6 3.6 54 25-79 72-128 (179)
20 3ct8_A Protein BH2160, putativ 25.7 46 0.0016 21.2 2.5 48 45-96 87-135 (146)
21 3ey7_A Biphenyl-2,3-DIOL 1,2-d 24.2 32 0.0011 20.6 1.4 48 45-97 73-120 (133)
22 2aee_A OPRT, oprtase, orotate 23.8 42 0.0015 23.6 2.2 36 61-97 6-41 (211)
23 3f1j_A Matrix protein, GP18, P 23.1 9.6 0.00033 27.0 -1.3 29 3-31 70-101 (142)
24 4hhu_A OR280; engineered prote 22.8 1.1E+02 0.0037 22.0 4.2 31 45-75 3-34 (170)
25 3d7n_A Flavodoxin, WRBA-like p 22.4 1.5E+02 0.005 20.1 4.7 61 23-84 69-134 (193)
26 3sui_B Transient receptor pote 22.3 24 0.00083 20.0 0.5 21 76-97 15-35 (37)
27 4hhu_A OR280; engineered prote 21.4 1.4E+02 0.0049 21.4 4.6 71 6-76 34-116 (170)
28 4ebb_A Dipeptidyl peptidase 2; 20.7 1.5E+02 0.0051 23.6 5.0 35 42-76 43-77 (472)
29 3l46_A Protein ECT2; alternati 20.4 1E+02 0.0035 20.3 3.4 28 44-77 26-53 (112)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=98.05 E-value=9.5e-07 Score=74.18 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=60.5
Q ss_pred cchhccccCCCCCCceEEEEeecCChHHHHHHHHHHHHHHHhcCCccCCcccccccccccccccccCCCC
Q psy16369 29 YPLTDMRENEKPGIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIRIVP 98 (101)
Q Consensus 29 ~~l~~~~~~~~~~~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYLRD~l 98 (101)
.|+..+++ ++++..|++++.|||++++|+.+.+++.++++++||...+++.++.|+..|+..||+|+.+
T Consensus 379 ~~~~~~~~-~~~~~~~~llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~ 447 (584)
T 2uuu_A 379 KYLHYIRS-FDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFL 447 (584)
T ss_dssp HHHHHTTT-SCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHH
T ss_pred HhhhhccC-CCCCccEEEEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhh
Confidence 45554444 7767789999999999999999999999999999999888899999999999999999863
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=97.85 E-value=2.2e-06 Score=72.34 Aligned_cols=70 Identities=40% Similarity=0.701 Sum_probs=59.6
Q ss_pred cchhccccCCCCCCceEEEEeecCChHHHHHHHHHHHHHHHhcCCccCCcccccccccccccccccCCCCC
Q psy16369 29 YPLTDMRENEKPGIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIRIVPM 99 (101)
Q Consensus 29 ~~l~~~~~~~~~~~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYLRD~lL 99 (101)
.++..+.+ ++++..|++++.|||+.+.|..+.+.+.++++++||+..++.+++.|+..||..||+||..+
T Consensus 450 ~~l~~~~g-~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (658)
T 4bby_A 450 FYITKFKG-FDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGL 519 (658)
T ss_dssp -------C-CCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcc-CChHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhcc
Confidence 45556655 89999999999999999999999999999999999999999999999999999999998643
No 3
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=92.40 E-value=0.1 Score=43.02 Aligned_cols=54 Identities=7% Similarity=-0.266 Sum_probs=41.4
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHHHHhcCCccC--Cccc--ccccccccccc----cccCC
Q psy16369 42 IDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPA--GETN--GMRGYMLTFVI----AYIRI 96 (101)
Q Consensus 42 ~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~l--G~~~--G~~W~~~RF~~----PYLRD 96 (101)
..|++++.++|+++.|+.+.+++.++++++||... .+.+ .+.|+. |... |++++
T Consensus 349 ~~~~l~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~ 410 (560)
T 1e8g_A 349 GRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDE 410 (560)
T ss_dssp CSEEEEEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGG
T ss_pred CceEEEEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhh
Confidence 46899999999999999999999999999998644 3333 345665 7654 77664
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=90.39 E-value=0.033 Score=46.81 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=40.8
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHHHHhcCCccC--Cccccccccccccccc----ccCCCC
Q psy16369 41 GIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPA--GETNGMRGYMLTFVIA----YIRIVP 98 (101)
Q Consensus 41 ~~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~l--G~~~G~~W~~~RF~~P----YLRD~l 98 (101)
...+.+++-|+|+.++. .++.+.+++++++|... .++.+++|+..||++| ++|+..
T Consensus 387 ~~~~~llve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~ 448 (571)
T 1f0x_A 387 KYEHHLLLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVH 448 (571)
T ss_dssp HCSEEEEEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred cCceEEEEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcc
Confidence 35689999999987543 25566678888766544 5678888888999997 777643
No 5
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=79.57 E-value=1.3 Score=34.19 Aligned_cols=42 Identities=7% Similarity=-0.110 Sum_probs=36.7
Q ss_pred CCceEEEEeecC-ChHHHHHHHHHHHHHHHhcCCccCCccccc
Q psy16369 41 GIDSFGKPDSHG-DPEDVKKNQAKIYSVALKFGGIPAGETNGM 82 (101)
Q Consensus 41 ~~~CL~vlgFEG-t~~~V~~r~~~~~~I~~~~GG~~lG~~~G~ 82 (101)
...|++++-++| +.++|..+.+.+.+++++++|+.+..++--
T Consensus 269 ~~~a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev~~ 311 (326)
T 1hsk_A 269 TKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRI 311 (326)
T ss_dssp SSCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCSEE
T ss_pred ccccEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEEEE
Confidence 356889999999 778999999999999999999999887643
No 6
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=76.34 E-value=5.2 Score=29.61 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=38.0
Q ss_pred CceEEEEeecCC--hHHHHHHHHHHHHHHHhcCCccCCccccccccccccccccc
Q psy16369 42 IDSFGKPDSHGD--PEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYI 94 (101)
Q Consensus 42 ~~CL~vlgFEGt--~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYL 94 (101)
..+++++.|.|. ++.+..+.+++.+.|+++|-.. .+..++-.+|+.|+-
T Consensus 137 ~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~----~~~~y~~A~Yd~P~t 187 (212)
T 3r8j_A 137 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVF----DEKVYYTAGYNSPVK 187 (212)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCB----CSSCEEEEESSSSSC
T ss_pred CEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCcc----CCCcEEEEEeCCCCC
Confidence 489999999995 4778899999999999998655 334456677777763
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=76.26 E-value=0.9 Score=37.19 Aligned_cols=54 Identities=4% Similarity=-0.186 Sum_probs=40.9
Q ss_pred CCceEEEEee-----cC-ChHHHHHHHHHHHHHHHhcCCccCCcc----------ccccccccccccccc
Q psy16369 41 GIDSFGKPDS-----HG-DPEDVKKNQAKIYSVALKFGGIPAGET----------NGMRGYMLTFVIAYI 94 (101)
Q Consensus 41 ~~~CL~vlgF-----EG-t~~~V~~r~~~~~~I~~~~GG~~lG~~----------~G~~W~~~RF~~PYL 94 (101)
+..|++++-| +| ++++|+.+.+++.++++.+||....++ ....|...++..|.+
T Consensus 309 ~~~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~ 378 (524)
T 2exr_A 309 CGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWET 378 (524)
T ss_dssp CCSEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSS
T ss_pred cccEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhccccc
Confidence 3568889999 99 778999999999999999999865532 223477766655544
No 8
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=73.56 E-value=4.4 Score=32.83 Aligned_cols=35 Identities=20% Similarity=-0.046 Sum_probs=31.0
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHHHHhcCCccC
Q psy16369 42 IDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPA 76 (101)
Q Consensus 42 ~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~l 76 (101)
..|++++.|+|++++|+.+.+.+.++++++|+...
T Consensus 318 ~~~~l~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~ 352 (520)
T 1wvf_A 318 GAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRI 352 (520)
T ss_dssp CSEEEEEEEEESHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46888899999999999999999999999998654
No 9
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=71.76 E-value=6.4 Score=29.55 Aligned_cols=49 Identities=8% Similarity=-0.080 Sum_probs=35.7
Q ss_pred CceEEEEeecCC--hHHHHHHHHHHHHHHHhcCCccCCccccccccccccccccc
Q psy16369 42 IDSFGKPDSHGD--PEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYI 94 (101)
Q Consensus 42 ~~CL~vlgFEGt--~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYL 94 (101)
..+++++.|.|. ++.+..+.+++.+.|++.|-... +..++-.+|+.|+-
T Consensus 156 ~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~~~----~~~y~~A~Yd~P~t 206 (227)
T 4b0y_A 156 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFD----EKVYYTAGYNSPVK 206 (227)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCCBC----SSCEEEEECC---C
T ss_pred CEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCccC----CCcEEEEEeCCCCC
Confidence 489999999995 46788899999999999986553 34456667777753
No 10
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=58.01 E-value=9.7 Score=30.83 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=30.9
Q ss_pred CCCCCceEEEEeecCChHHHHHHHHHHHHHHHhcCCc
Q psy16369 38 EKPGIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGI 74 (101)
Q Consensus 38 ~~~~~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~ 74 (101)
++.+..|++++-|+|++++++.+.+++.+++.++|+.
T Consensus 283 ~~~~~~~~llve~~g~~~~~~~~~~~~~~~~~~~g~~ 319 (476)
T 3pm9_A 283 LEARYPWYVLIELSSPRDDARAALESILERGFEDGIV 319 (476)
T ss_dssp SSSCCSEEEEEEEEESSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCccCCeEEEEEEccCcHHHHHHHHHHHHHHHhcCCC
Confidence 3334479999999999988999999999999998875
No 11
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=43.85 E-value=28 Score=25.02 Aligned_cols=48 Identities=8% Similarity=-0.087 Sum_probs=36.7
Q ss_pred CceEEEEeecCCh--HHHHHHHHHHHHHHHhcCCccCCcccccccccccccccc
Q psy16369 42 IDSFGKPDSHGDP--EDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAY 93 (101)
Q Consensus 42 ~~CL~vlgFEGt~--~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PY 93 (101)
..+++++.|.|.. +.+..+.+++.+.|.+.|-... +...+-.+|+.|+
T Consensus 132 ~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~----~~~~~~a~Yn~P~ 181 (195)
T 2gov_A 132 GITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQ----GDVYYCAGYDPPM 181 (195)
T ss_dssp SCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCCEE----EEEEEEEESSCCS
T ss_pred CeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCccc----CCcEEEEEeCCCC
Confidence 4799999999964 6688888899999998876553 3345667777774
No 12
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=38.17 E-value=31 Score=22.79 Aligned_cols=45 Identities=9% Similarity=-0.149 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHHh--cCCccC--------CcccccccccccccccccCCC
Q psy16369 53 DPEDVKKNQAKIYSVALK--FGGIPA--------GETNGMRGYMLTFVIAYIRIV 97 (101)
Q Consensus 53 t~~~V~~r~~~~~~I~~~--~GG~~l--------G~~~G~~W~~~RF~~PYLRD~ 97 (101)
++++.+.-...+.+.++. ||-+.+ |-.++..|.+.+|...+++|+
T Consensus 31 t~eD~~~l~~~i~~~l~~~~~~~i~lL~~~~~f~G~~~~A~~~d~k~~~~h~~~~ 85 (127)
T 2ook_A 31 THEDYLVITPMLEGALSQVDQPKVSLFLDATELDGWDLRAAWDDLKLGLKHKSEF 85 (127)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTTCGGGGCCCCCTTSCCE
T ss_pred CHHHHHHHHHHHHHHHhhccCCCEEEEEEccCCCCCCHHHHHHHHHhhhhhHhcC
Confidence 457777777777778888 887766 888999999999988887764
No 13
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=37.96 E-value=22 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCccCCccccccccccccccccc
Q psy16369 61 QAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYI 94 (101)
Q Consensus 61 ~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYL 94 (101)
..++.++.+++||..+-+-|-++-+...++.||=
T Consensus 32 ~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN 65 (106)
T 2l42_A 32 IDQLARLIRANGGEVLDSKPRESKENVFIVSPYN 65 (106)
T ss_dssp HHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTC
T ss_pred HHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCC
Confidence 4456678889999999988877777777777863
No 14
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=34.70 E-value=81 Score=21.00 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=35.1
Q ss_pred cccccch-hccccCCCCCCceEEEEeecCCh---HHHHHHHHHHHHHHHhcCCccCCc
Q psy16369 25 RPRHYPL-TDMRENEKPGIDSFGKPDSHGDP---EDVKKNQAKIYSVALKFGGIPAGE 78 (101)
Q Consensus 25 ~~~~~~l-~~~~~~~~~~~~CL~vlgFEGt~---~~V~~r~~~~~~I~~~~GG~~lG~ 78 (101)
..++.|| +++.. -+.....+++.|.-+.. +.-..-.+.+.+.+.+.|+..+|+
T Consensus 67 ~~~~~fl~~~l~~-~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~ 123 (173)
T 2fcr_A 67 TSWDEFLYDKLPE-VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGF 123 (173)
T ss_dssp STHHHHHHHTGGG-CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHhhccc-cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEee
Confidence 4577888 87765 44445677777773322 222234567788899999998876
No 15
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=32.82 E-value=31 Score=22.21 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=33.9
Q ss_pred cccccchhccccCCCCCCceEEEEeecCChH--HHHHHHHHHHHHHHhcCCccCCcc
Q psy16369 25 RPRHYPLTDMRENEKPGIDSFGKPDSHGDPE--DVKKNQAKIYSVALKFGGIPAGET 79 (101)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~CL~vlgFEGt~~--~V~~r~~~~~~I~~~~GG~~lG~~ 79 (101)
..++.|++.+.. -+.....++++|. |... .-..-.+.+.+++++.|+..+++.
T Consensus 69 ~~~~~fl~~l~~-~~l~~k~~~vfg~-G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~ 123 (148)
T 3f6r_A 69 DDFLSLFEEFDR-IGLAGRKVAAFAS-GDQEYEHFCGAVPAIEERAKELGATIIAEG 123 (148)
T ss_dssp HHHHHHHTTGGG-TCCTTCEEEEEEE-ECTTSSSTTTHHHHHHHHHHHTTCEECSCC
T ss_pred HHHHHHHHHhhc-cCCCCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHHcCCEEeecc
Confidence 368889999876 3444556666665 3221 112234567788899999988764
No 16
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=32.64 E-value=53 Score=20.93 Aligned_cols=54 Identities=7% Similarity=-0.106 Sum_probs=33.3
Q ss_pred ccccccchhccccCCCCCCceEEEEeecCCh-HHHHHHHHHHHHHHHhcCCccCCc
Q psy16369 24 SRPRHYPLTDMRENEKPGIDSFGKPDSHGDP-EDVKKNQAKIYSVALKFGGIPAGE 78 (101)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~CL~vlgFEGt~-~~V~~r~~~~~~I~~~~GG~~lG~ 78 (101)
...+|.|++++.. .+......++++--+.. ..-..-.+.+.++++..|+..+++
T Consensus 67 p~~~~~fl~~l~~-~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 121 (147)
T 1f4p_A 67 QDDFIPLFDSLEE-TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQD 121 (147)
T ss_dssp CTTTHHHHHTGGG-SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSC
T ss_pred ChhHHHHHHHHHh-cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhc
Confidence 3468999999875 33344556666652211 112334566777888999988775
No 17
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=27.05 E-value=64 Score=21.99 Aligned_cols=56 Identities=14% Similarity=-0.005 Sum_probs=32.9
Q ss_pred ccccccccchhccccCCCCCCceEEEEeecCChHHHHHHHHHHHHHHHhcCCccCCc
Q psy16369 22 SYSRPRHYPLTDMRENEKPGIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAGE 78 (101)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~lG~ 78 (101)
+++..+|.||.++..+ .....-+++++--|...........+..++...|...++.
T Consensus 83 ~~p~~lK~~ld~l~~~-~~~gK~~~~~~tgg~~~~~~a~~~~l~~~l~~~g~~~v~~ 138 (197)
T 2vzf_A 83 SYTGLLKAFLDILPQF-ALAGKAALPLATGGSPAHVLALDYGLRPVLHSMGVRHVVQ 138 (197)
T ss_dssp BCCHHHHHHHTTSCTT-TTTTCEEEEEEEESSGGGGGHHHHTHHHHHHTTTCSEECC
T ss_pred CCCHHHHHHHHhcccc-ccCCCEEEEEEECCCcchhhHHHHHHHHHHHHcCCEeccc
Confidence 5567789999998642 2222233333334444432222235678889999888765
No 18
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=26.78 E-value=30 Score=24.91 Aligned_cols=39 Identities=13% Similarity=-0.113 Sum_probs=29.3
Q ss_pred EEEEeccccc-----cccccchhccccCCC--CCCceEEEEeecCC
Q psy16369 15 YLVETSTSYS-----RPRHYPLTDMRENEK--PGIDSFGKPDSHGD 53 (101)
Q Consensus 15 ~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~CL~vlgFEGt 53 (101)
+|+++|.|-. ...|.++..+-+.|. +...-+.++.|-+.
T Consensus 23 fvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~ 68 (266)
T 4hqo_A 23 LLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY 68 (266)
T ss_dssp EEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS
T ss_pred EEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC
Confidence 5889998876 356778888777777 55677888888764
No 19
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=26.73 E-value=68 Score=21.58 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=36.3
Q ss_pred cccccchhccccCCCCCCceEEEEeecCCh---HHHHHHHHHHHHHHHhcCCccCCcc
Q psy16369 25 RPRHYPLTDMRENEKPGIDSFGKPDSHGDP---EDVKKNQAKIYSVALKFGGIPAGET 79 (101)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~CL~vlgFEGt~---~~V~~r~~~~~~I~~~~GG~~lG~~ 79 (101)
..++.|++++.+ .+.....+++.|.-+.. +.-..-.+.+.+++.+.|+..+|.-
T Consensus 72 ~~~~~fl~~l~~-~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~ 128 (179)
T 1yob_A 72 ESWEEFLPKIEG-LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSW 128 (179)
T ss_dssp CCHHHHHHHHTT-CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCB
T ss_pred hHHHHHHHHhhh-cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEee
Confidence 457788988875 44455677777763322 2233456678889999999988764
No 20
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=25.67 E-value=46 Score=21.19 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=24.8
Q ss_pred EEEEeecC-ChHHHHHHHHHHHHHHHhcCCccCCcccccccccccccccccCC
Q psy16369 45 FGKPDSHG-DPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIRI 96 (101)
Q Consensus 45 L~vlgFEG-t~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYLRD 96 (101)
+..++|+= +.++++. +.+.+++.|+.....+|............|+||
T Consensus 87 ~~hi~f~v~~~~dv~~----~~~~l~~~G~~~~~~~p~~~~~g~~~~~~~~~D 135 (146)
T 3ct8_A 87 LNHLAFHAASREKVDE----LTQKLKERGDPILYEDRHPFAGGPNHYAVFCED 135 (146)
T ss_dssp CCEEEEECSCHHHHHH----HHHHHHHHTCCBCCTTTTTCTTCTTCCEEEEEC
T ss_pred ceEEEEECCCHHHHHH----HHHHHHHcCCccccCCCccccCCCceEEEEEEC
Confidence 44566653 2345554 445556678887764444332211233456666
No 21
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=24.24 E-value=32 Score=20.55 Aligned_cols=48 Identities=10% Similarity=-0.128 Sum_probs=24.8
Q ss_pred EEEEeecCChHHHHHHHHHHHHHHHhcCCccCCcccccccccccccccccCCC
Q psy16369 45 FGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIRIV 97 (101)
Q Consensus 45 L~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYLRD~ 97 (101)
...+.|+=+ +++ .++.+-++++|+....+.....|..+.....|++|.
T Consensus 73 ~~~~~~~v~-dd~----~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DP 120 (133)
T 3ey7_A 73 SADLCFITD-TVL----SDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDP 120 (133)
T ss_dssp CCEEEEECS-SCH----HHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECT
T ss_pred ccEEEEEeC-cHH----HHHHHHHHHCCCccccCCccccCCCCCeEEEEEECC
Confidence 344556533 223 344556667787776443233444444445566663
No 22
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=23.76 E-value=42 Score=23.62 Aligned_cols=36 Identities=6% Similarity=-0.164 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccCCcccccccccccccccccCCC
Q psy16369 61 QAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIRIV 97 (101)
Q Consensus 61 ~~~~~~I~~~~GG~~lG~~~G~~W~~~RF~~PYLRD~ 97 (101)
.+.+.+++.+.|.+..+......|..++| .||..|.
T Consensus 6 ~~~~a~~l~~~gai~~~~h~~f~l~sG~~-S~~~~D~ 41 (211)
T 2aee_A 6 ASQIATQLLDIKAVYLKPEDPFTWASGIK-SPIYTDN 41 (211)
T ss_dssp HHHHHHHHHHTTSEEECTTSCEECGGGCE-ESEEECG
T ss_pred HHHHHHHHHHCCCEEECCCCCeEeCCCCc-CCeEEeC
Confidence 45688999999999999888888999998 4666664
No 23
>3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus}
Probab=23.12 E-value=9.6 Score=27.01 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=21.9
Q ss_pred cceeeEEEecceEEEEeccc---cccccccch
Q psy16369 3 SSVVNVFFKGNRYLVETSTS---YSRPRHYPL 31 (101)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 31 (101)
-|.|||+|.=..+|+-|-.| |..++|+|.
T Consensus 70 hslvnvyfqiddfl~ltlns~~vykdpi~~~m 101 (142)
T 3f1j_A 70 HSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYM 101 (142)
T ss_dssp SSCEEEEEEECHHHHHHHHHHBSSSSCCCSEE
T ss_pred cceEEEEEEecceeeeeecceeeeccccccee
Confidence 47899999999998877554 566666553
No 24
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=22.77 E-value=1.1e+02 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=13.7
Q ss_pred EEEEeecCCh-HHHHHHHHHHHHHHHhcCCcc
Q psy16369 45 FGKPDSHGDP-EDVKKNQAKIYSVALKFGGIP 75 (101)
Q Consensus 45 L~vlgFEGt~-~~V~~r~~~~~~I~~~~GG~~ 75 (101)
++++.|+|++ +..+...+...+-++++-|++
T Consensus 3 vm~i~f~gddlea~ekalkemirqarkfagtv 34 (170)
T 4hhu_A 3 VMVIVFEGDDLEALEKALKEMIRQARKFAGTV 34 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 3445555544 223333333344445555543
No 25
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=22.42 E-value=1.5e+02 Score=20.12 Aligned_cols=61 Identities=11% Similarity=-0.137 Sum_probs=35.0
Q ss_pred cccccccchhcccc-----CCCCCCceEEEEeecCChHHHHHHHHHHHHHHHhcCCccCCccccccc
Q psy16369 23 YSRPRHYPLTDMRE-----NEKPGIDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAGETNGMRG 84 (101)
Q Consensus 23 ~~~~~~~~l~~~~~-----~~~~~~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~lG~~~G~~W 84 (101)
.+..+|.||.++.. .+. ++.+.++.-.-+....-..-...+..++..+|...+|......|
T Consensus 69 ~~~~~k~fld~~~~~~~~~~l~-gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg~~~~~~~ 134 (193)
T 3d7n_A 69 PSWQFKKFADASSKPWFSAKWQ-DKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSN 134 (193)
T ss_dssp ECHHHHHHHHHTHHHHHTTTTT-TCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECCCC-----
T ss_pred ccHHHHHHHHHhhhhccccccC-CCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeCCccCccc
Confidence 45678999998752 132 34444444443333333445667788899999988887554444
No 26
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=22.29 E-value=24 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=17.0
Q ss_pred CCcccccccccccccccccCCC
Q psy16369 76 AGETNGMRGYMLTFVIAYIRIV 97 (101)
Q Consensus 76 lG~~~G~~W~~~RF~~PYLRD~ 97 (101)
.|.-.|+.|..... .|-|||.
T Consensus 15 sgrvsgrnwknf~l-vpllrd~ 35 (37)
T 3sui_B 15 SGRVSGRNWKNFAL-VPLLRDA 35 (37)
T ss_pred ccccccccccccch-hhhhhcc
Confidence 46778999988777 7999986
No 27
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.38 E-value=1.4e+02 Score=21.36 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=40.7
Q ss_pred eeEEEecceEEEEeccc---cccccccchhccccCCCC--------CCceEEEEeecCCh-HHHHHHHHHHHHHHHhcCC
Q psy16369 6 VNVFFKGNRYLVETSTS---YSRPRHYPLTDMRENEKP--------GIDSFGKPDSHGDP-EDVKKNQAKIYSVALKFGG 73 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--------~~~CL~vlgFEGt~-~~V~~r~~~~~~I~~~~GG 73 (101)
|..-..||+..+-...- -.|-+-+=-+++++-|+. +...++++.|+|++ +..+...+...+-++++-|
T Consensus 34 vtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfag 113 (170)
T 4hhu_A 34 VTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAG 113 (170)
T ss_dssp EEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcc
Confidence 44556788865543221 112222233444444432 33567788999987 4455556666677888888
Q ss_pred ccC
Q psy16369 74 IPA 76 (101)
Q Consensus 74 ~~l 76 (101)
++.
T Consensus 114 tvt 116 (170)
T 4hhu_A 114 TVT 116 (170)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
No 28
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=20.65 E-value=1.5e+02 Score=23.56 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=28.3
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHHHHhcCCccC
Q psy16369 42 IDSFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPA 76 (101)
Q Consensus 42 ~~CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~l 76 (101)
.+-++.+|=||+-+........+.++|+++||+.+
T Consensus 43 gPIfl~~gGEg~~~~~~~~~g~~~~lA~~~~a~~v 77 (472)
T 4ebb_A 43 GPIFFYTGNEGDVWAFANNSAFVAELAAERGALLV 77 (472)
T ss_dssp CCEEEEECCSSCHHHHHHHCHHHHHHHHHHTCEEE
T ss_pred CcEEEEECCCccccccccCccHHHHHHHHhCCeEE
Confidence 67888888898876666666677899999999977
No 29
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=20.36 E-value=1e+02 Score=20.33 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=21.0
Q ss_pred eEEEEeecCChHHHHHHHHHHHHHHHhcCCccCC
Q psy16369 44 SFGKPDSHGDPEDVKKNQAKIYSVALKFGGIPAG 77 (101)
Q Consensus 44 CL~vlgFEGt~~~V~~r~~~~~~I~~~~GG~~lG 77 (101)
.+++.||.+ .+++.+.++...+||...+
T Consensus 26 ~Ic~sGf~~------~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 26 ILSFLGFSD------EEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp EECEESCCH------HHHHHHHHHHHHTTCEECC
T ss_pred EEEEeCCCH------HHHHHHHHHHHHcCCEECc
Confidence 444567752 3578888999999999886
Done!