RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16369
         (101 letters)



>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
           lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
           {Dictyostelium discoideum} PDB: 2uuv_A*
          Length = 584

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 51  HGDPEDVKKNQAKIYSVALKFGGIPAGETNGMRGYMLTFVIAYIR 95
            G  + V  ++  ++ +  K      G   G       + + YIR
Sbjct: 400 EGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIR 444


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.041
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 7/32 (21%)

Query: 46  GKPDSHGDP----EDVKKNQAKIYSVALKFGG 73
            +P            V +  A++ ++   FGG
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAI---FGG 162


>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha;
           oxidoreductase-transferase complex, electron transfer,
           oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
           e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
           3s2x_A
          Length = 729

 Score = 26.4 bits (58), Expect = 2.1
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)

Query: 67  VALKFGGIPAGETNGMRGYML----TFVIAY 93
             + FGG+  G     R Y       FV+  
Sbjct: 225 AGMMFGGVTPGAREEQRDYQRRRIRAFVLYL 255


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 3.0
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 14/55 (25%)

Query: 3   SSVVNVFFKGNRYLVETSTSYSRPRHYPLTDMRE---NEKP-------GIDSFGK 47
               +  +  N+        Y+  R  P   +R+     +P       G+   GK
Sbjct: 113 IEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163



 Score = 25.2 bits (54), Expect = 4.6
 Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 13  NRYLVETSTSYSRPRHYPLTDMRENEKPGIDSF 45
           +R +V+    Y+ P+ +   D+     P +D +
Sbjct: 446 HRSIVD---HYNIPKTFDSDDL---IPPYLDQY 472


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0822    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,577,242
Number of extensions: 85828
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 10
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)