RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16369
         (101 letters)



>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
           subunit {Methylococcus capsulatus [TaxId: 414]}
          Length = 162

 Score = 23.7 bits (51), Expect = 4.1
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 6   VNVFFKGNRYLVETSTSYSRPRHY--PLTDMRE 36
           VN F  G R L           +Y  PL ++R+
Sbjct: 122 VNYFLDGERQLGTRLMELRNLNYYDTPLEELRK 154


>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
           subunit {Methylosinus trichosporium [TaxId: 426]}
          Length = 167

 Score = 23.7 bits (51), Expect = 4.1
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 6   VNVFFKGNRYLVETSTSYSRPRHY--PLTDMRE 36
           VNVF + +  L           +Y  PL  +R+
Sbjct: 125 VNVFLRTDAALGTVLMEIRNTDYYGTPLEGLRK 157


>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 23.5 bits (50), Expect = 7.1
 Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 7/57 (12%)

Query: 51  HGDPEDVKKNQAKIYSVALKFGGI-------PAGETNGMRGYMLTFVIAYIRIVPML 100
           +G  E V  N   +  V  K G                     L   +  ++   + 
Sbjct: 86  YGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLY 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,043
Number of extensions: 15997
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)