BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16371
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 5 LPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTGI 63
LPE+ CL+LSPAN WQ F D LI TI H + TL ++LFG+ K +G+
Sbjct: 162 LPEHGCLLLSPANFWQNSQEQFSSDPDLIRTIHQHEPKTLQTSATLKDLLFGVPGKQSGV 221
Query: 64 RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
SL N++RI+ ++VT+ + +Y+ +L
Sbjct: 222 ---SLYNRKRIVSYTVTIALRRYNATFL 246
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
+LPE+ CL+LSP N WQ D F D +I TI H + TL ++LFG+ K +G
Sbjct: 163 ILPEHGCLLLSPGNFWQNDRERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKHSG 222
Query: 63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
+ SL ++R++ +++TL Y +L
Sbjct: 223 V---SLYTRKRLVSYTITLVFQHYHAKFL 248
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
+LPE+ CL+LSP N WQ D F D +I TI H + TL ++LFG+ K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222
Query: 63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
+ SL ++R++ +++TL +Y +L
Sbjct: 223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
+LPE+ CL+LSP N WQ D F D +I TI H + TL ++LFG+ K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222
Query: 63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
+ SL ++R++ +++TL +Y +L
Sbjct: 223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
+LPE+ CL+LSP N WQ D F D +I TI H + TL ++LFG+ K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222
Query: 63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
+ SL ++R + +++TL +Y +L
Sbjct: 223 V---SLYTRKRTVSYTITLVFQRYHAKFL 248
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
+LPE+ CL+LSP N WQ D F D +I TI H + TL ++LFG+ K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222
Query: 63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
+ SL ++R++ +++TL Y +L
Sbjct: 223 V---SLYTRKRMVSYTITLVFQHYHAKFL 248
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
+LPE+ CL+LSP N WQ D F D +I TI H + TL ++LFG+ K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDRERFHADPDIIRTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222
Query: 63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
+ SL ++R++ +++TL Y +L
Sbjct: 223 V---SLYTRKRLVSYTITLVFQHYHAKFL 248
>sp|A4J0C7|SYD_FRATW Aspartate--tRNA ligase OS=Francisella tularensis subsp. tularensis
(strain WY96-3418) GN=aspS PE=3 SV=1
Length = 590
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 ANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSL 68
A LW D MF+KD + + HH KV+ E L N ++ R Y +
Sbjct: 428 APLWVVDFPMFEKDDNRLYAM--HHPFTAPKVSSVEDLVNTNPEELSSRAYDM 478
>sp|Q5NIQ4|SYD_FRATT Aspartate--tRNA ligase OS=Francisella tularensis subsp. tularensis
(strain SCHU S4 / Schu 4) GN=aspS PE=3 SV=2
Length = 590
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 ANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSL 68
A LW D MF+KD + + HH KV+ E L N ++ R Y +
Sbjct: 428 APLWVVDFPMFEKDDNRLYAM--HHPFTAPKVSSVEDLVNTNPEELSSRAYDM 478
>sp|Q0BPA2|SYD_FRATO Aspartate--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=aspS PE=3 SV=1
Length = 590
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 ANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSL 68
A LW D MF+KD + + HH KV+ E L N ++ R Y +
Sbjct: 428 APLWVVDFPMFEKDDNRLYAM--HHPFTAPKVSSVEDLVNTNPEELSSRAYDM 478
>sp|Q2A622|SYD_FRATH Aspartate--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=aspS PE=3 SV=1
Length = 590
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 ANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSL 68
A LW D MF+KD + + HH KV+ E L N ++ R Y +
Sbjct: 428 APLWVVDFPMFEKDDNRLYAM--HHPFTAPKVSSVEDLVNTNPEELSSRAYDM 478
>sp|A7N949|SYD_FRATF Aspartate--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=aspS PE=3 SV=1
Length = 590
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 ANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSL 68
A LW D MF+KD + + HH KV+ E L N ++ R Y +
Sbjct: 428 APLWVVDFPMFEKDDNRLYAM--HHPFTAPKVSSVEDLVNTNPEELSSRAYDM 478
>sp|Q9AT63|PDX1_GINBI Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba
GN=PDX1 PE=2 SV=1
Length = 309
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 31 QLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNK 71
Q ++ + H L + +L E + GIN+KD + RY+ R++
Sbjct: 269 QAVTHYNDPHILAEVSCSLGEAMVGINLKDEKVERYAERSE 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,743,865
Number of Sequences: 539616
Number of extensions: 929589
Number of successful extensions: 3284
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3274
Number of HSP's gapped (non-prelim): 15
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)