Query psy16371
Match_columns 91
No_of_seqs 37 out of 39
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 19:36:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y32_A Humanin; solution struc 35.1 1.9 6.7E-05 22.7 -2.4 9 7-15 5-13 (26)
2 2gjv_A Putative cytoplasmic pr 29.4 49 0.0017 24.0 3.4 28 53-86 74-101 (175)
3 3nbm_A PTS system, lactose-spe 29.0 23 0.00077 23.0 1.4 19 2-20 48-66 (108)
4 1u7k_A GAG polyprotein; capsid 24.8 22 0.00074 24.9 0.7 23 19-41 23-49 (131)
5 3k4i_A Uncharacterized protein 20.9 1.6E+02 0.0055 21.6 4.9 55 27-88 11-67 (244)
6 1n8j_A AHPC, alkyl hydroperoxi 20.2 33 0.0011 22.7 0.9 25 6-35 161-185 (186)
7 2cjr_A Nucleocapsid protein; o 18.5 99 0.0034 21.4 3.1 35 48-90 74-110 (128)
8 2gib_A Nucleocapsid protein; d 16.7 1.1E+02 0.0038 20.3 2.9 35 48-90 44-80 (103)
9 3do8_A Phosphopantetheine aden 14.7 68 0.0023 21.4 1.5 27 5-40 84-110 (148)
10 1jy4_A B4dimer; eight-stranded 14.3 46 0.0016 18.2 0.4 11 4-14 25-35 (35)
No 1
>1y32_A Humanin; solution structure, alzheimer'S disease, neuroprotection, unknown function; NMR {Synthetic} PDB: 2gd3_A
Probab=35.13 E-value=1.9 Score=22.71 Aligned_cols=9 Identities=44% Similarity=0.955 Sum_probs=6.2
Q ss_pred CCCeeeEcC
Q psy16371 7 EYSCLVLSP 15 (91)
Q Consensus 7 e~~CLlLSP 15 (91)
.|+||+||-
T Consensus 5 gFsCLLL~~ 13 (26)
T 1y32_A 5 GFSCLLLLT 13 (26)
T ss_dssp HHHHHHHHH
T ss_pred ccEEEEEEc
Confidence 367888764
No 2
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=29.42 E-value=49 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=19.8
Q ss_pred hhccccccceeeeeeccCceeEEEEEEEEEeecc
Q psy16371 53 LFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKY 86 (91)
Q Consensus 53 LfGvP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y 86 (91)
-||-|-...+|-+ +|.++++||+++++-
T Consensus 74 ~F~~p~d~~~i~Q------~R~l~l~vTVi~r~l 101 (175)
T 2gjv_A 74 VFAEPENTDATVQ------KQLIRISATVIVPQI 101 (175)
T ss_dssp EECCCCSCSSCEE------EEEEEEEEEEEESSH
T ss_pred ccCCcccCCccce------EEEEEEEEEEEeccc
Confidence 3677744444544 489999999999763
No 3
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.01 E-value=23 Score=23.02 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=14.4
Q ss_pred CcCCCCCCeeeEcCcccch
Q psy16371 2 VGVLPEYSCLVLSPANLWQ 20 (91)
Q Consensus 2 ~~~lPe~~CLlLSPan~W~ 20 (91)
.+.+++++|+||+|--=..
T Consensus 48 ~~~~~~~DvvLLgPQV~y~ 66 (108)
T 3nbm_A 48 YDIMGVYDLIILAPQVRSY 66 (108)
T ss_dssp TTTGGGCSEEEECGGGGGG
T ss_pred HhhccCCCEEEEChHHHHH
Confidence 4567899999999965443
No 4
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=24.77 E-value=22 Score=24.86 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=18.9
Q ss_pred chhhhhhhccchh----hhhhhhhccc
Q psy16371 19 WQQDINMFQKDSQ----LISTIFNHHD 41 (91)
Q Consensus 19 W~~d~~~F~~D~~----ii~TI~~~~~ 41 (91)
|+++.-+|++||. +|++|++.|.
T Consensus 23 wk~~~~sfsedP~~~~~l~e~i~~th~ 49 (131)
T 1u7k_A 23 WKNNNPSFSEDPGKLTALIESVLTTHQ 49 (131)
T ss_dssp HHHTSCCTTTCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHhcC
Confidence 8999999999997 6777776653
No 5
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=20.93 E-value=1.6e+02 Score=21.56 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=38.0
Q ss_pred ccchhhhhhhhhccccccccchhhhhh--hccccccceeeeeeccCceeEEEEEEEEEeeccCC
Q psy16371 27 QKDSQLISTIFNHHDLNKAKVTLSEIL--FGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDK 88 (91)
Q Consensus 27 ~~D~~ii~TI~~~~~~~~~~~sl~dlL--fGvP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y~~ 88 (91)
+.|+++++...+.. +.++.|.| .|++.-..|++-+ ..+.|++=.|+|+-+...++
T Consensus 11 ~~~~~ll~~l~~~~-----ta~v~Dal~~~g~~~~~~~i~p~--~~~~~~~G~A~TV~~~p~d~ 67 (244)
T 3k4i_A 11 PIAQSVLDECEHLD-----TASLSDALDSLGIDGGLPGIASQ--VPGTRCVGIAFTVQYQPVDA 67 (244)
T ss_dssp CCCHHHHHHHTTCC-----HHHHHHHHHHTTCCCBCTTCEEC--STTCCEEEEEEEEEEEEC--
T ss_pred cCCHHHHHHhcCCC-----hHHHHHHHHhcCCcccCccceEC--CCCCeEEEEEEEEEEecCCC
Confidence 35777888776433 46777776 4666556788855 35789999999998876543
No 6
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=20.16 E-value=33 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=16.0
Q ss_pred CCCCeeeEcCcccchhhhhhhccchhhhhh
Q psy16371 6 PEYSCLVLSPANLWQQDINMFQKDSQLIST 35 (91)
Q Consensus 6 Pe~~CLlLSPan~W~~d~~~F~~D~~ii~T 35 (91)
|..+| |+| |+...+.+..|++.+.+
T Consensus 161 p~~~~----p~~-w~~~~~~~~~~~~~~~~ 185 (186)
T 1n8j_A 161 PGEVC----PAK-WKEGEATLAPSLDLVGK 185 (186)
T ss_dssp TTCBB----CTT-CCTTSCCBCCSSTTTTT
T ss_pred CCCcc----CCC-CCCCCccccCChHhccc
Confidence 45666 766 77666666666665544
No 7
>2cjr_A Nucleocapsid protein; oligomerization domain, viral protein; 2.50A {Sars coronavirus} SCOP: d.254.1.2 PDB: 2jw8_A
Probab=18.47 E-value=99 Score=21.39 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=26.1
Q ss_pred hhhhhhhc--cccccceeeeeeccCceeEEEEEEEEEeeccCCCC
Q psy16371 48 TLSEILFG--INIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGY 90 (91)
Q Consensus 48 sl~dlLfG--vP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y~~~f 90 (91)
+.+.+||| |..|+.| -.-.|+|.-++.+.+-||.|
T Consensus 74 s~aAllFgS~v~~ke~~--------D~v~lty~y~i~vpkddP~~ 110 (128)
T 2cjr_A 74 SASAFFGMSRIGMEVTP--------SGTWLTYHGAIKLDDKDPQF 110 (128)
T ss_dssp CHHHHHHTSCCEEEECS--------SCEEEEEEEEEECCTTSTTH
T ss_pred cHHHHhhcceeeEEecC--------CcEEEEEEEEEEcCCCCCCH
Confidence 56789999 4444433 45678999999999999865
No 8
>2gib_A Nucleocapsid protein; dimer, viral protein; 1.75A {Sars coronavirus} SCOP: d.254.1.2
Probab=16.69 E-value=1.1e+02 Score=20.35 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=25.5
Q ss_pred hhhhhhhc--cccccceeeeeeccCceeEEEEEEEEEeeccCCCC
Q psy16371 48 TLSEILFG--INIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGY 90 (91)
Q Consensus 48 sl~dlLfG--vP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y~~~f 90 (91)
+.+.+||| |..|+.| ---.|+|.-++.+.+-||.|
T Consensus 44 s~aA~lFgS~v~~ke~~--------d~~~lty~y~i~vpk~dP~~ 80 (103)
T 2gib_A 44 SASAFFGMSRIGMEVTP--------SGTWLTYHGAIKLDDKDPQF 80 (103)
T ss_dssp CHHHHHHHSEEEEEECS--------SCEEEEEEEEEEECTTSTTH
T ss_pred cHHHHhhcceeeEeecC--------CcEEEEEEEEEEeCCCCCCH
Confidence 56789999 4433333 45578999999999998865
No 9
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=14.74 E-value=68 Score=21.43 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=18.4
Q ss_pred CCCCCeeeEcCcccchhhhhhhccchhhhhhhhhcc
Q psy16371 5 LPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHH 40 (91)
Q Consensus 5 lPe~~CLlLSPan~W~~d~~~F~~D~~ii~TI~~~~ 40 (91)
-|++.||++||-.. ++.+.++.+....
T Consensus 84 ~~~~d~ivvs~Et~---------~~~~~l~~~~~~~ 110 (148)
T 3do8_A 84 DVDFEYLVVSPETY---------EMALKINQKREEL 110 (148)
T ss_dssp TSCCSEEEECTTTH---------HHHHHHHHHHHHH
T ss_pred CCCCCEEEEChhhc---------ccHHHHHHHHHHc
Confidence 49999999999774 2344555555433
No 10
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=14.31 E-value=46 Score=18.25 Aligned_cols=11 Identities=55% Similarity=1.180 Sum_probs=9.4
Q ss_pred CCCCCCeeeEc
Q psy16371 4 VLPEYSCLVLS 14 (91)
Q Consensus 4 ~lPe~~CLlLS 14 (91)
+||.|-|=+|+
T Consensus 25 vlpgykceila 35 (35)
T 1jy4_A 25 VLPGYKCEILA 35 (35)
T ss_dssp EETTEEEEEEC
T ss_pred ecCCceeEecC
Confidence 78999998875
Done!