Query psy16371
Match_columns 91
No_of_seqs 37 out of 39
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 19:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16371.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16371hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gjva1 d.323.1.2 (A:1-134) Pu 28.5 26 0.0019 22.9 3.4 56 22-86 22-77 (134)
2 d2jfga2 c.59.1.1 (A:298-437) U 26.3 14 0.001 23.0 1.7 25 5-29 104-128 (140)
3 d1ei9a_ c.69.1.13 (A:) Palmito 22.7 9.2 0.00067 26.9 0.2 28 13-40 153-182 (279)
4 d1h2vc2 a.118.1.14 (C:291-480) 22.0 14 0.001 25.3 1.1 38 21-61 17-54 (190)
5 d2giba1 d.254.1.2 (A:270-366) 20.7 33 0.0024 21.1 2.6 35 48-90 42-78 (97)
6 d1m0da_ c.52.1.17 (A:) Endonuc 17.7 17 0.0012 23.6 0.6 32 57-91 10-41 (129)
7 d1an8a2 d.15.6.1 (A:96-208) St 16.3 13 0.00098 23.5 -0.1 31 15-53 8-38 (113)
8 d1iiba_ c.44.2.1 (A:) Enzyme I 16.0 23 0.0017 21.2 1.0 14 4-17 45-58 (103)
9 d2ge7a1 d.254.1.2 (A:8-114) Co 15.8 49 0.0036 20.7 2.6 35 48-90 52-88 (107)
10 d2csoa1 a.4.5.31 (A:8-122) Ple 14.1 48 0.0035 20.1 2.2 38 43-80 5-42 (115)
No 1
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=28.50 E-value=26 Score=22.86 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=31.1
Q ss_pred hhhhhccchhhhhhhhhccccccccchhhhhhhccccccceeeeeeccCceeEEEEEEEEEeecc
Q psy16371 22 DINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKY 86 (91)
Q Consensus 22 d~~~F~~D~~ii~TI~~~~~~~~~~~sl~dlLfGvP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y 86 (91)
++|.|-+||+. =+.+|.. -+.=++-+-=-||-|-...++-+. |.+++++|+++++-
T Consensus 22 ~ve~fp~~p~~--Y~l~h~~-GAvLv~Y~GS~f~~p~~~~avvQ~------r~~~~~~TVl~r~l 77 (134)
T d2gjva1 22 DIHISSTDAKV--YIPTGQQ-VTVLIHYCGSVFAEPENTDATVQK------QLIRISATVIVPQI 77 (134)
T ss_dssp EEECCSSCTTT--CCCCSSS-EEEEEEEEEEEECCCCSCSSCEEE------EEEEEEEEEEESSH
T ss_pred eeEeCCCCHHh--CCCCCCc-eeEEEEecCcccCCccCCCccceE------EEEEEEEEEEehhh
Confidence 45667777762 1122221 011122222247777555555544 88999999999864
No 2
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=26.27 E-value=14 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=15.9
Q ss_pred CCCCCeeeEcCcccchhhhhhhccc
Q psy16371 5 LPEYSCLVLSPANLWQQDINMFQKD 29 (91)
Q Consensus 5 lPe~~CLlLSPan~W~~d~~~F~~D 29 (91)
....+++|||||-==.+....|.+-
T Consensus 104 ~~~g~~VLlSPa~aSfD~f~nfeeR 128 (140)
T d2jfga2 104 VQPGDMVLLSPACASLDQFKNFEQR 128 (140)
T ss_dssp CCTTCEEEECCSSBSTTTSSSHHHH
T ss_pred cccCCEEEECCCccchhhhhCHHHH
Confidence 3456799999997544444445433
No 3
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.66 E-value=9.2 Score=26.94 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=23.3
Q ss_pred EcCcccch--hhhhhhccchhhhhhhhhcc
Q psy16371 13 LSPANLWQ--QDINMFQKDSQLISTIFNHH 40 (91)
Q Consensus 13 LSPan~W~--~d~~~F~~D~~ii~TI~~~~ 40 (91)
++||++|+ .+.+.+.+.+..|..|.++.
T Consensus 153 l~~a~Yw~dp~~~~~Y~~~s~fL~~iNne~ 182 (279)
T d1ei9a_ 153 LVQAEYWHDPIREDIYRNHSIFLADINQER 182 (279)
T ss_dssp CTGGGGBCCSTTHHHHHHHCSSHHHHTTTT
T ss_pred eeccchhcCcchHhhhhhhhhHHHHHhCCc
Confidence 79999999 56777888888888888764
No 4
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.99 E-value=14 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.0
Q ss_pred hhhhhhccchhhhhhhhhccccccccchhhhhhhccccccc
Q psy16371 21 QDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDT 61 (91)
Q Consensus 21 ~d~~~F~~D~~ii~TI~~~~~~~~~~~sl~dlLfGvP~k~T 61 (91)
.++++|--.++|+++|..++.- -|. -++.|.++|.|.+
T Consensus 17 ~sier~liee~i~dii~~~~~n--Rke-cA~~Ll~~p~~~~ 54 (190)
T d1h2vc2 17 HSVERFVIEENLHCIIKSHWKE--RKT-CAAQLVSYPGKNK 54 (190)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTC--HHH-HHHHHHTCCCSSC
T ss_pred cchHHHHHHHHHHHHHHHHHcc--HHH-HHHHHHhCCCccc
Confidence 4789999999999999999831 122 3788889987654
No 5
>d2giba1 d.254.1.2 (A:270-366) Coronavirus nucleocapsid protein {SARS coronavirus [TaxId: 227859]}
Probab=20.70 E-value=33 Score=21.13 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=25.0
Q ss_pred hhhhhhhc--cccccceeeeeeccCceeEEEEEEEEEeeccCCCC
Q psy16371 48 TLSEILFG--INIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGY 90 (91)
Q Consensus 48 sl~dlLfG--vP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y~~~f 90 (91)
+.+.+||| |..|+.| ---.++|.-++.+.+-||.|
T Consensus 42 s~~A~lFgS~v~~k~~~--------d~~~lty~~~~~vpk~dP~~ 78 (97)
T d2giba1 42 SASAFFGMSRIGMEVTP--------SGTWLTYHGAIKLDDKDPQF 78 (97)
T ss_dssp CHHHHHHHSEEEEEECS--------SCEEEEEEEEEEECTTSTTH
T ss_pred cHHHHHhcccceeeecC--------CceEEEEEEEEEeCCCCccH
Confidence 56789999 3333332 33468999999999999875
No 6
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=17.71 E-value=17 Score=23.61 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=23.7
Q ss_pred ccccceeeeeeccCceeEEEEEEEEEeeccCCCCC
Q psy16371 57 NIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91 (91)
Q Consensus 57 P~k~TGvk~~~~~~r~R~i~yAVTl~l~~y~~~fi 91 (91)
-++.-||+.-+ .+..|.|.+-.-.+.|.|+|+
T Consensus 10 ~L~~~gv~~~Y---E~~ki~Y~~p~~~~~YtPDF~ 41 (129)
T d1m0da_ 10 QLESKGIKFEY---EEWKVPYVIPASNHTYTPDFL 41 (129)
T ss_dssp HHHHTTCCCEE---SCEEEEEEECCEEEEECCSEE
T ss_pred HHHHCCCcEEE---eeeEEEEEecceeeeecccEE
Confidence 34556666532 788899998877889999984
No 7
>d1an8a2 d.15.6.1 (A:96-208) Streptococcal superantigen Spe-C {Streptococcus pyogenes [TaxId: 1314]}
Probab=16.29 E-value=13 Score=23.53 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=19.0
Q ss_pred Ccccchhhhhhhccchhhhhhhhhccccccccchhhhhh
Q psy16371 15 PANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEIL 53 (91)
Q Consensus 15 Pan~W~~d~~~F~~D~~ii~TI~~~~~~~~~~~sl~dlL 53 (91)
|+|+|.+-.+.-.... +|. +.+..+|+.|+=
T Consensus 8 ~~Nl~idG~q~~~~~~----~i~----~~Kk~VTlQElD 38 (113)
T d1an8a2 8 LGNLFISGESQQNLNN----KII----LEKDIVTFQEID 38 (113)
T ss_dssp CEEEEETTSCCEECTT----SCE----ECCSEEEHHHHH
T ss_pred eEEEEEcCeecccccc----eEE----EcCcEEehHHhH
Confidence 8999997766554322 222 345667777763
No 8
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]}
Probab=16.01 E-value=23 Score=21.20 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=11.6
Q ss_pred CCCCCCeeeEcCcc
Q psy16371 4 VLPEYSCLVLSPAN 17 (91)
Q Consensus 4 ~lPe~~CLlLSPan 17 (91)
.+.+++|+||+|--
T Consensus 45 ~~~~~DviLl~PQv 58 (103)
T d1iiba_ 45 KGQNADVVLLGPQI 58 (103)
T ss_dssp HHTTCSEEEECGGG
T ss_pred hccCCCEEEECHHH
Confidence 45789999999963
No 9
>d2ge7a1 d.254.1.2 (A:8-114) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=15.82 E-value=49 Score=20.66 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=24.9
Q ss_pred hhhhhhhc--cccccceeeeeeccCceeEEEEEEEEEeeccCCCC
Q psy16371 48 TLSEILFG--INIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGY 90 (91)
Q Consensus 48 sl~dlLfG--vP~k~TGvk~~~~~~r~R~i~yAVTl~l~~y~~~f 90 (91)
+.+.+||| |..|+.| ---.++|.-++.+.+-||.|
T Consensus 52 s~~A~lFgS~v~~k~~~--------d~~~lty~~~~~vpk~dP~~ 88 (107)
T d2ge7a1 52 SSHACLFGSRVTPKLQP--------DGLHLKFEFTTVVPRDDPQF 88 (107)
T ss_dssp CHHHHHHHSEEEEEEET--------TEEEEEEEEEEEEETTSTTH
T ss_pred cHHHHhhcccceeeecC--------CcEEEEEEEEEEeCCCCCCH
Confidence 56789999 3333332 34568899999999998865
No 10
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.13 E-value=48 Score=20.05 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=28.2
Q ss_pred ccccchhhhhhhccccccceeeeeeccCceeEEEEEEE
Q psy16371 43 NKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVT 80 (91)
Q Consensus 43 ~~~~~sl~dlLfGvP~k~TGvk~~~~~~r~R~i~yAVT 80 (91)
++.++++.++.=.|--..+||+....+-+.|++..+.|
T Consensus 5 l~~~~~l~~l~~~m~d~~~Gi~~~~~~~~~~~y~~cF~ 42 (115)
T d2csoa1 5 LPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFT 42 (115)
T ss_dssp SCTTCCHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEE
T ss_pred ccCCCCHHHHHHHhhCCCCCceeeEeeeCCeecccccc
Confidence 34567888888888778899987766667777777654
Done!