RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16371
(91 letters)
>gnl|CDD|147445 pfam05250, UPF0193, Uncharacterized protein family (UPF0193). This
family of proteins is functionally uncharacterized.
Length = 212
Score = 29.6 bits (66), Expect = 0.13
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 44 KAKVTLSEILFGINIKDTGIRRYSLRNKQR 73
K K L + G +I D GIR+ R +
Sbjct: 113 KEKRKLQNTMAGTHIPDPGIRKRVPRRRSE 142
>gnl|CDD|235883 PRK06901, PRK06901, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 322
Score = 28.9 bits (65), Expect = 0.28
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 1 MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN---KAKVTLSEILFGIN 57
MV L EY + S WQQ+ + + +LI+ + N + N K+ +S ++
Sbjct: 232 MVTALSEYELDIESQLAEWQQNNLLRYHEEKLITPVLNGENENGEESVKLHIS----QLS 287
Query: 58 IKDTGIRRYSLRNKQRIIQ--FSVTLFMTKYDKGY 90
+ G++ +S+ ++QR +V L Y +GY
Sbjct: 288 AVENGVQFWSVADEQRFNLAFLAVKLLELIYQQGY 322
>gnl|CDD|227918 COG5631, COG5631, Predicted transcription regulator, contains HTH
domain (MarR family) [Transcription].
Length = 199
Score = 28.4 bits (63), Expect = 0.34
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 32 LISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQR 73
L+ I H D K +L++I +N +DT YSLR +
Sbjct: 87 LLLHIIRHRDRPK---SLADICQMLNREDTHNITYSLRKLLK 125
>gnl|CDD|106256 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Provisional.
Length = 360
Score = 27.6 bits (61), Expect = 0.91
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 12 VLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEI 52
++ NL+ + +N+++K ++ TI H + + T++ I
Sbjct: 293 IIRDKNLFAESLNLYKKYLKICDTITPHRNYQLLQTTINTI 333
>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional.
Length = 291
Score = 26.8 bits (59), Expect = 1.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 30 SQLISTIFNHHDLNKAKVTLSEILFGINIKD 60
S L T N L+K +TL++ L G ++
Sbjct: 239 SDLTDTKLNGAKLDKIALTLAKALTGADLTG 269
>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit
APPBP1. APPBP1 is part of the heterodimeric activating
enzyme (E1), specific for the Rub family of
ubiquitin-like proteins (Ubls). E1 enzymes are part of a
conjugation cascade to attach Ub or Ubls, covalently to
substrate proteins consisting of activating (E1),
conjugating (E2), and/or ligating (E3) enzymes. E1
activates ubiquitin(-like) by C-terminal adenylation,
and subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. Post-translational
modification by Rub family of ubiquitin-like proteins
(Ublps) activates SCF ubiquitin ligases and is involved
in cell cycle control, signaling and embryogenesis.
ABPP1 contains part of the adenylation domain.
Length = 425
Score = 25.3 bits (56), Expect = 5.3
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 14 SPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQR 73
SP L D + F + + +I+T L + L+++L+ NI +R Y L R
Sbjct: 98 SPEALLDNDPSFFSQFTVVIATNLPESTL----LRLADVLWSANIPLLYVRSYGLYGYIR 153
Query: 74 II 75
I
Sbjct: 154 IQ 155
>gnl|CDD|218696 pfam05692, Myco_haema, Mycoplasma haemagglutinin. This family
consists of several haemagglutinin sequences from
Mycoplasma synoviae and Mycoplasma gallisepticum. The
major plasma membrane proteins, pMGAs, of Mycoplasma
gallisepticum are cell adhesin (hemagglutinin)
molecules. It has been shown that the genetic
determinants that code for the haemagglutinins are
organised into a large family of genes and that only one
of these genes is predominately expressed in any given
strain.
Length = 437
Score = 25.0 bits (55), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 41 DLNKAKVTLSEILFGIN 57
D+N AKVTLS + FG N
Sbjct: 193 DINVAKVTLSNLKFGEN 209
>gnl|CDD|225125 COG2215, COG2215, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 303
Score = 24.7 bits (54), Expect = 8.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 17 NLWQQDINMFQKDSQLISTIFNHHDLNKAKVTL-SEILFGI 56
LWQ++I Q S + TI N + L+G+
Sbjct: 30 ALWQREIY--QALSTALKTILEDG--NAGWTLIPLSFLYGV 66
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 24.6 bits (54), Expect = 8.1
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 24 NMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSV 79
+ KD +++ ++ NK KV++ + D R I F
Sbjct: 134 ALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPP 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.406
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,503,216
Number of extensions: 352870
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 18
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)