RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16371
         (91 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.6 bits (69), Expect = 0.043
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 19/80 (23%)

Query: 9   SCLVLSPANLW-QQDINMFQKDSQLISTIFNHHDLNKAKVTLSEIL-F------GINIKD 60
           S L++ P N   +QD+        LI  I++          L  I+ F      GI ++ 
Sbjct: 531 STLIVVPFNQGSKQDVE------ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEH 584

Query: 61  TGIR-----RYSLRNKQRII 75
              +     R  L N  R++
Sbjct: 585 IDSKSEFAHRIMLTNILRMM 604


>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
           antibiotics design, transferase, hydrolase; HET: M0E;
           2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
          Length = 751

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 20  QQDINMFQKDSQLISTIFNHHDLNKAKVTLSEI 52
            +    F+ D +LI+ I + +   +  V  S  
Sbjct: 136 NRQFGFFRLDPRLITMISSPNGEQRLFVPRSGF 168


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,326,734
Number of extensions: 62196
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 6
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)