BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16373
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 47 ITVLECV---SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGS 103
+ + CV RV++G+ D +KV+ E + L TL GH + +L DG+ ++SGS
Sbjct: 239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS-- 296
Query: 104 QDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
D + VWD TG C++++ H + D+ ++S D + +WD G L T+Q
Sbjct: 297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
RV++GS+D TL+V+ +E Q L L GH + + DG ++SG+ D ++ VWD
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA--YDFMVKVWDPE 267
Query: 115 TGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTI 162
T C++++Q H +++L + +V+S D + VWD G+ + T+
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 47 ITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPI-TTLFIDGVSMMSGSGSQD 105
IT L+ NR+++GS D+TLKV+ + L TL GH G + ++ D + + SGS D
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII---SGSTD 178
Query: 106 GLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLL 159
L VW+ TG C++++ H + + + V+S +D L VWD G L
Sbjct: 179 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLS 160
SGS D L VW VTG C+ ++ H G + + D+ +IS D L VW+ G +
Sbjct: 134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH 193
Query: 161 TI 162
T+
Sbjct: 194 TL 195
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 37 VESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTL-----HGHCGPITTLF 91
++ H +T L+ N VIT S D T+K++ L+ + + L G G + +
Sbjct: 355 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414
Query: 92 IDGVSMMSGSGSQDG 106
++ GS++G
Sbjct: 415 ASNTKLVCAVGSRNG 429
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.8 bits (151), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+++ S D T+KV+ L + +L TL GH G ++T+ + + SG +DG++ +WD G
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 117 ACMYSIQAHDGCIHALTYS-DSYVISLGQDERLCVWD 152
+YS++A + IHAL +S + Y + + + +WD
Sbjct: 594 KKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWD 629
Score = 35.4 bits (80), Expect = 0.016, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 39 STRAHHQPITVLECV---SNRVITGSQDHTLKVYKLEDQQLLF-----TLHGHCGPITTL 90
+ RAH +T + ++ +++ S+D ++ ++KL + L GH + +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 91 FIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERL 148
+ + SGS DG L +WD G H + ++ +S + ++S +D +
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 149 CVWD 152
+W+
Sbjct: 497 KLWN 500
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%)
Query: 41 RAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG 100
R H + + N V++GS D+TL V+ + + L+ L GH I + D
Sbjct: 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWD 152
S S D + +WD G MY++Q H + L SD +++S D + WD
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 47 ITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL-FIDGVSMMSGSGSQD 105
IT L+ N VITG+ D ++VY +++ L L GH G + L + G ++ SGS D
Sbjct: 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV--SGSTD 182
Query: 106 GLLCVWDTVTGACMYSIQAHDG---CIHALTYSD-SYVISLGQDERLCVW 151
+ VWD G C + + H+ C+ + Y + Y+++ +D L VW
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 32/159 (20%)
Query: 34 CCKVESTRAHHQPITVLECVSNR----VITGSQDHTLKVYKLE------------DQQLL 77
CC H+ + L+ V + ++TGS+D+TL V+KL D L+
Sbjct: 194 CC-THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 78 F-----------TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHD 126
F L GH + T + G + SGS D L VWD C+Y + H
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310
Query: 127 GCIHALTY--SDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
I++ Y IS D + +WD G L+ T+Q
Sbjct: 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 41 RAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG 100
R H + + N V++GS D+TL V+ + + L+ L GH I + D
Sbjct: 267 RGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWD 152
S S D + +WD G Y++Q H + L SD +++S D + WD
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 47 ITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL-FIDGVSMMSGSGSQD 105
IT L+ N VITG+ D ++VY +++ L L GH G + L + G ++ SGS D
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV--SGSTD 182
Query: 106 GLLCVWDTVTGACMYSIQAHDG---CIHALTYSD-SYVISLGQDERLCVW 151
+ VWD G C + + H+ C+ + Y + Y+++ +D L VW
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 32/159 (20%)
Query: 34 CCKVESTRAHHQPITVLECVSNR----VITGSQDHTLKVYKLE------------DQQLL 77
CC H+ + L+ V + ++TGS+D+TL V+KL D L+
Sbjct: 194 CC-THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 78 F-----------TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHD 126
F L GH + T + G + SGS D L VWD C+Y + H
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHT 310
Query: 127 GCIHALTY--SDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
I++ Y IS D + +WD G L T+Q
Sbjct: 311 DRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ 349
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ + L TL H P++ + + + S S DGL +WDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 114 VTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 62 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 121
Query: 119 MYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 168
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 24 MQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGH 83
M EE+ K E+ A QP ++ ++ LK FTL GH
Sbjct: 1 MATEEK------KPETEAARAQPTPSSSATQSKPTPVKPNYALK----------FTLAGH 44
Query: 84 CGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVIS 141
++++ S S D L+ +W G +I H I + +S + ++S
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 142 LGQDERLCVWDRFQGHLLSTIQ 163
D+ L +WD G L T++
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLK 126
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 272
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ + L TL H P++ + + + S S DGL +WDT
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D +K++ D + T+ GH I+ + S + S S D L +WD +G
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 117 ACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQ 163
C+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 24 MQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGH 83
M EE+ K E+ A QP ++ ++ LK FTL GH
Sbjct: 3 MATEEK------KPETEAARAQPTPSSSATQSKPTPVKPNYALK----------FTLAGH 46
Query: 84 CGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVIS 141
++++ S S D L+ +W G +I H I + +S + ++S
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 142 LGQDERLCVWDRFQGHLLSTIQ 163
D+ L +WD G L T++
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLK 128
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 274
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 253
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKT 228
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 39 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 98
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 145
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 249
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 119 MYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 152
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 256
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 40 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 250
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ + L TL H P++ + + + S S DGL +WDT
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 36 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 95
Query: 119 MYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 142
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 246
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 253
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 152
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 256
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 61 SQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMY 120
S D +K++ D + T+ GH I+ + S + S S D L +WD +G C+
Sbjct: 45 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 121 SIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
+++ H + ++ + ++S DE + +WD G L T+
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ + S D L+ +W G +I H I
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 253
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ + L TL H P++ + + + S S DGL +WDT
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 40 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 250
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKT 246
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 57 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 116
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N G+Q V + L FTL GH ++++ S S D L+ +W
Sbjct: 13 NLYFQGTQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70
Query: 115 TGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
G +I H I + +S + ++S D+ L +WD G L T++
Sbjct: 71 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 267
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKT 234
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 13 GSAGSLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSN--RVITGSQDHTLKVYK 70
G+ GS K V+ L + H + ++ ++ N + + S D +K++
Sbjct: 1 GAMGSATQSKPTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG 56
Query: 71 LEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIH 130
D + T+ GH I+ + S + S S D L +WD +G C+ +++ H +
Sbjct: 57 AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 116
Query: 131 ALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
++ + ++S DE + +WD G L T+
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 151
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 255
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ + L TL H P++ + + + S S DGL +WDT
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 119 MYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 152
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 256
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 17 SLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQL 76
S D K +++ + + C K +++ SN +++GS D +++++ ++ +
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 77 LFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYS-IQAHDGCIHALTYS 135
L TL H P++ + + + S S DGL +WDT +G C+ + I + + + +S
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 136 DS--YVISLGQDERLCVWDRFQGHLLST 161
+ Y+++ D L +WD +G L T
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKT 230
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 41 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 100
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 147
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 251
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D L+ +W+ T + +Q H
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 43 HHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL-FIDGVSMMSGS 101
H + V++ +++ S D T+KV+ + + TL+GH I L + D + + S
Sbjct: 255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV---S 311
Query: 102 GSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWD 152
GS D + +WD GAC+ ++ H+ + + + + ++S D ++ VWD
Sbjct: 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 31 TLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL 90
T TC V + H + I L+ V++GS D+T++++ +E L L GH + +
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 91 FIDGVSMMSGSGSQDGLLCVWDTVTG---------ACMYSIQAHDGCIHALTYSDSYVIS 141
D ++ SG+ DG + VWD V C+ ++ H G + L + + ++S
Sbjct: 343 RFDNKRIV--SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVS 400
Query: 142 LGQDERLCVWD 152
D+ + +WD
Sbjct: 401 SSHDDTILIWD 411
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 35 CKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
C+ E+++ + L+ ++++G +D+T+K++ + L GH G + L D
Sbjct: 128 CRSETSKG----VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 183
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWD 152
+++GS D + VWD TG + ++ H + L +++ +++ +D + VWD
Sbjct: 184 RVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 239
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 57 VITGSQDHTLKVYKLE---DQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
++T S+D ++ V+ + D L L GH + + D ++S SG D + VW+T
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNT 283
Query: 114 VTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWD 152
T + ++ H I L Y D V+S D + +WD
Sbjct: 284 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLS 160
SG +D + +WD T C + H G + L Y + +I+ D + VWD G +L+
Sbjct: 148 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 207
Query: 161 TI 162
T+
Sbjct: 208 TL 209
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ L TL H P++ + + + S S DGL +WDT
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP 149
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L+FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+TLK++ + L T GH +F + S+ G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 253
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D ++ +W+ T + +Q H
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++ S D TLK++ + + L TL GH + + S + SGS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 114 VTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
TG C+ ++ AH + A+ ++ S ++S D +WD G L T+
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
SN +++GS D +++++ ++ L TL H P++ + + + S S DGL +WDT
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 114 VTGACMYS-IQAHDGCIHALTYSDS--YVISLGQDERLCVWDRFQGHLLST 161
+G C+ + I + + + +S + Y+++ D L +WD +G L T
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
+ S D +K++ D + T+ GH I+ + S + S S D L +WD +G C
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 119 MYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +++ H + ++ + ++S DE + +WD G L T+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP 149
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
+ L+FTL GH ++++ S S D L+ +W G +I H I
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 132 LTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ +S + ++S D+ L +WD G L T++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 44 HQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG- 100
+ P++ ++ N ++ + D+ LK++ + L T GH +F + S+ G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGK 253
Query: 101 ---SGSQDGLLCVWDTVTGACMYSIQAH 125
SGS+D ++ +W+ T + +Q H
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL--FIDGVSMMSGSGSQDGLLCVWDTVTG 116
TG++D ++++ +E+++++ L GH I +L F G ++SGSG D + +WD TG
Sbjct: 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG--DRTVRIWDLRTG 197
Query: 117 ACMYSIQAHDGCIH-ALTYSDSYVISLGQ-DERLCVWDRFQGHLLSTI 162
C ++ DG A++ D I+ G D + VWD G L+ +
Sbjct: 198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 41 RAHHQPITVLECVS--NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMM 98
+ H Q I L+ +++++GS D T++++ L Q TL G T G
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 221
Query: 99 SGSGSQDGLLCVWDTVTG 116
+GS D + VWD+ TG
Sbjct: 222 IAAGSLDRAVRVWDSETG 239
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 63 DHTLKVYKLEDQQLLF-------------TLHGHCGPITTLFIDGVSMMS-----GSGSQ 104
+ T +VY++ D L+ L+ P + L+I V +G++
Sbjct: 84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143
Query: 105 DGLLCVWDTVTGACMYSIQAHDGCIHALTY--SDSYVISLGQDERLCVWDRFQGHLLSTI 162
D L+ +WD + +Q H+ I++L Y S ++S D + +WD G T+
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 163 QLQ 165
++
Sbjct: 204 SIE 206
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 27/133 (20%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLH-------GHCGPITTLFI--DGVSMMSGSGSQDGL 107
+ GS D ++V+ E L+ L GH + ++ DG S++SGS D
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRS 279
Query: 108 LCVWD------------TVTGACMYSIQAHDGCIH--ALTYSDSYVISLGQDERLCVWDR 153
+ +W+ +G C + H + A T +D Y++S +D + WD+
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 154 FQGHLLSTIQLQG 166
G+ L + LQG
Sbjct: 340 KSGNPL--LMLQG 350
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N ++ S DH+L+++ L++ Q + GH + ++ + SG +D L VW+ V
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN-V 138
Query: 115 TGACMYSIQ--AHDGCIHALTYSDS----YVISLGQDERLCVWDRFQGHLLSTIQ 163
G CM+++ AH + + +S S ++S G D + VWD G L++ ++
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK 193
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+++G D+ +KV+ L +L+ L GH +T++ + + S +DG+ +WD G
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 117 ACMYSIQA 124
+ + A
Sbjct: 229 EALSEMAA 236
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 43 HHQPITVLEC-----VSNRVITGSQDHTLKV-------------YKLEDQQLLFTLHGHC 84
H +T L C + +V++ S+D TL Y L D++L GH
Sbjct: 12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRL----EGHS 67
Query: 85 GPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVISL 142
++ + + + S S D L +W+ G C Y H + ++ +S + ++S
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 143 GQDERLCVWD 152
G+D L VW+
Sbjct: 128 GRDNALRVWN 137
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 47 ITVLECVSNR-VITGSQDHTLKVYKLEDQQL-LFTLHGHCGPIT----TLFIDGVSMMSG 100
++V NR +++G +D+ L+V+ ++ + + + H ++ + +D ++SG
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHL 158
D L+ VWD TG + ++ H + ++T S S S +D +WD +G
Sbjct: 173 G--WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA 230
Query: 159 LSTI 162
LS +
Sbjct: 231 LSEM 234
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 42 AHHQPIT--VLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS 99
H P+T + V + +++ S+D T+KV+ E TL GH + + D +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 100 GSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY--SDSYVISLGQDERLCVWDRFQGH 157
S S D + +WD C+ ++ HD + +++ + +++S +D+ + +W+ G+
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 158 LLSTI 162
+ T
Sbjct: 226 CVKTF 230
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG-----SGSQDGLLCVW 111
+++GS+D T+K++ + L TL GH ++ GV SG S + D L VW
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 112 DTVTGACMYSIQAHDGCIHALTY--SDSYVISLGQDERLCVWD 152
D CM ++ AH+ + +L + + YV++ D+ + VW+
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY--SDSYVISLGQDERLCVWDRFQGHL 158
SGS+D + +WD TG C+ ++ HD + + + +++S D+ L VWD
Sbjct: 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372
Query: 159 LSTIQ 163
+ T+
Sbjct: 373 MKTLN 377
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 78 FTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY--S 135
+ L GH P+T + V + S S+D + VWD TG +++ H + +++ S
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 136 DSYVISLGQDERLCVWDRFQG 156
+ S D + +WD FQG
Sbjct: 162 GKLLASCSADMTIKLWD-FQG 181
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 61 SQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG----SGSQDGLLCVWDTVTG 116
S D T+K++ + + + T+HGH ++++ I M +G S S+D + +W+ TG
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSI----MPNGDHIVSASRDKTIKMWEVQTG 224
Query: 117 ACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVW 151
C+ + H + + + + + S D+ + VW
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/81 (18%), Positives = 39/81 (48%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
+ +++ S+D T+K+++++ + T GH + + + + S S D + VW
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 115 TGACMYSIQAHDGCIHALTYS 135
T C ++ H + ++++
Sbjct: 265 TKECKAELREHRHVVECISWA 285
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 16 GSLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNR-VITGSQDHTLKVYK-LED 73
GS+ FK + +L V++ +T + VS + ++ S +++++ LE
Sbjct: 70 GSIWVFKDPEGAPNESLCTAGVQTEAG----VTDVAWVSEKGILVASDSGAVELWEILEK 125
Query: 74 QQLL---FTLHGHCGPITTL--FIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHD-- 126
+ LL F + H + TL F DG +SG +D + VWD A + S AH
Sbjct: 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG--KDFSVKVWDLSQKAVLKSYNAHSSE 183
Query: 127 -GCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQL 164
C+ A D+ +S G+D R+ +WD + + I
Sbjct: 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF 222
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 56 RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG----SGSQDGLLCVW 111
+++T S D T ++ +E QLL + HGH + L +D +G SG D VW
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 112 DTVTGACMYSIQAHDGCIHALTYSDS-YVISLGQDERLC 149
D +G C+ + + H+ ++++ Y S + G D+ C
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVW 111
+ G D+T+ V+ + + L GH ++TL + SGS D L VW
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 57 VITGSQDHTLKVYKLEDQQLL----FTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
++ S +++++L++ + L F + H ++T+ + + SGS+D + VWD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 113 TVTGACMYSIQAHDG---CIHALTYSDSYVISLGQDERLCVWD 152
+ S +AH C+ A + DS +S +D R+ +WD
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 56 RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI----DGVSMMSGSGSQDGLLCVW 111
+ ++GS+D +KV+ L Q +L + H +T + D V + S S+D + +W
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL---SCSEDNRILLW 197
Query: 112 DT 113
DT
Sbjct: 198 DT 199
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 57 VITGSQDHTLKVYKL--EDQQLLF-----TLHGHCGPITTLFIDGVSMMSGSGSQDGLLC 109
+I+GS+D T+ ++KL E+Q F L GH ++ L + + + S S D L
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 110 VWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWD 152
+WD TG H ++++ +S + ++S G + + +W+
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 105 DGLLCVWDTVTGACMYSIQAHDGCIHALTYSDS--YVISLGQDERLCVWD 152
DG L VW+T Y+ +AH+ ++ L+ S + Y+ + G+D++L +WD
Sbjct: 193 DGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 22 KKMQVEEEMTLTCCKVESTRAHHQPITVLECVS---NRVITGSQDHTLKVYKLEDQQLLF 78
K +V +E +L V + +AH+ + + VS N+ +T S D T+K++ ++ +++
Sbjct: 124 KTAKVWKEGSL----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKVIK 177
Query: 79 TLHG-HCGPITTLFI--DGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDG---CIHAL 132
T G H + L + DG + S S DGL+ + D TG + + + H+ CI L
Sbjct: 178 TFSGIHNDVVRHLAVVDDGHFI---SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL 234
Query: 133 TYSDSYVISLGQDERLCVWDRFQGHLLSTIQL 164
D ++S G+D + +W + G L I L
Sbjct: 235 PNGD--IVSCGEDRTVRIWSKENGSLKQVITL 264
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLL---CVW 111
++V + S+D T++++ +DQ L ++ G + ++ D + G +D + ++
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 112 DTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
T +Y++ H G + +L++ D VIS D+ VW +G L+ +Q
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQ 139
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 54 SNRVITG-SQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
SN +I D +KV+ L + +L GH G + T+ + + SG +DG +WD
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 113 TVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDERLCVWDRFQGHLL 159
G +Y++ D I+AL +S + Y + + +WD +G ++
Sbjct: 221 LNEGKHLYTLDGGD-IINALCFSPNRYWLCAATGPSIKIWD-LEGKII 266
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 57 VITGSQDHTLKVYKLEDQQLLF-----TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVW 111
+++ S+D T+ ++KL + + L GH ++ + I + SGS DG L +W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 112 DTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWD 152
D TG H + ++ +S + ++S +D+ + +W+
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++GS D TL+++ L GH + ++ + SGS+D + +W+T+ G
Sbjct: 78 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-G 136
Query: 117 ACMYSIQ--AHDGCIHALTY----SDSYVISLGQDERLCVWD 152
C Y++Q +H + + + S+ ++S G D+ + VW+
Sbjct: 137 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 54 SNRVITG-SQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
SN +I D +KV+ L + +L GH G + T+ + + SG +DG +WD
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 113 TVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDERLCVWDRFQGHLL 159
G +Y++ D I+AL +S + Y + + +WD +G ++
Sbjct: 244 LNEGKHLYTLDGGD-IINALCFSPNRYWLCAATGPSIKIWD-LEGKII 289
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 19 LDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVS---NRVITGSQDHTLKVYKLEDQQ 75
L F+ M + E+MTL + + H+ +T + + +++ S+D T+ ++KL +
Sbjct: 18 LYFQSM-MTEQMTLR----GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE 72
Query: 76 LLF-----TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIH 130
+ L GH ++ + I + SGS DG L +WD TG H +
Sbjct: 73 TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL 132
Query: 131 ALTYS--DSYVISLGQDERLCVWD 152
++ +S + ++S +D+ + +W+
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++GS D TL+++ L GH + ++ + SGS+D + +W+T+ G
Sbjct: 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-G 159
Query: 117 ACMYSIQ--AHDGCIHALTY----SDSYVISLGQDERLCVWD 152
C Y++Q +H + + + S+ ++S G D+ + VW+
Sbjct: 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++ S D TL+++ + + GH + ++ ID + M SGS+D + VW T+ G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 117 ACMYSIQAHDGCIHALTY-------SDSY-VISLGQDERLCVW--DRFQ 155
C+ ++ H+ + + DS +IS G D+ + W ++FQ
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 43 HHQPITVLECVSNR--------VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
H+ ++ + V N +I+ D +K + L Q+ GH I TL
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
+ S +DG + +W+ MY++ A D + +L +S
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFS 246
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--------DGVSMMSGSGSQDGLL 108
+I+GS+D T+KV+ ++ Q L TL GH ++ + + D V+++ S D ++
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMV 178
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
W+ H+ I+ LT S + + S G+D + +W+ + T+ Q
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++ S D TL+++ + + GH + ++ ID + M SGS+D + VW T+ G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 117 ACMYSIQAHDGCIHALTY-------SDSY-VISLGQDERLCVW--DRFQ 155
C+ ++ H+ + + DS +IS G D+ + W ++FQ
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 43 HHQPITVLECVSNR--------VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
H+ ++ + V N +I+ D +K + L Q+ GH I TL
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
+ S +DG + +W+ MY++ A D + +L +S
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFS 246
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--------DGVSMMSGSGSQDGLL 108
+I+GS+D T+KV+ ++ Q L TL GH ++ + + D V+++ S D ++
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMV 178
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
W+ H+ I+ LT S + + S G+D + +W+ + T+ Q
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++ S D TL+++ + + GH + ++ ID + M SGS+D + VW T+ G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 117 ACMYSIQAHDGCIHALTY-------SDSY-VISLGQDERLCVW--DRFQ 155
C+ ++ H+ + + DS +IS G D+ + W ++FQ
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 43 HHQPITVLECVSNR--------VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
H+ ++ + V N +I+ D +K + L Q+ GH I TL
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
+ S +DG + +W+ MY++ A D + +L +S
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFS 246
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--------DGVSMMSGSGSQDGLL 108
+I+GS+D T+KV+ ++ Q L TL GH ++ + + D V+++ S D ++
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMV 178
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
W+ H+ I+ LT S + + S G+D + +W+ + T+ Q
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++ S D TL+++ + + GH + ++ ID + M SGS+D + VW T+ G
Sbjct: 74 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 132
Query: 117 ACMYSIQAHDGCIHALTY-------SDSY-VISLGQDERLCVW--DRFQ 155
C+ ++ H+ + + DS +IS G D+ + W ++FQ
Sbjct: 133 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 43 HHQPITVLECVSNR--------VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
H+ ++ + V N +I+ D +K + L Q+ GH I TL
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 200
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
+ S +DG + +W+ MY++ A D + +L +S
Sbjct: 201 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFS 240
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--------DGVSMMSGSGSQDGLL 108
+I+GS+D T+KV+ ++ Q L TL GH ++ + + D V+++ S D ++
Sbjct: 116 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMV 172
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
W+ H+ I+ LT S + + S G+D + +W+ + T+ Q
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++ S D TL+++ + + GH + ++ ID + M SGS+D + VW T+ G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 117 ACMYSIQAHDGCIHALTY-------SDSY-VISLGQDERLCVW--DRFQ 155
C+ ++ H+ + + DS +IS G D+ + W ++FQ
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 43 HHQPITVLECVSNR--------VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
H+ ++ + V N +I+ D +K + L Q+ GH I TL
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
+ S +DG + +W+ MY++ A D + +L +S
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFS 246
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--------DGVSMMSGSGSQDGLL 108
+I+GS+D T+KV+ ++ Q L TL GH ++ + + D V+++ S D ++
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMV 178
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
W+ H+ I+ LT S + + S G+D + +W+ + T+ Q
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N+++T S D T ++ +E Q T GH G + +L + + + SG+ D +WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 115 TGACMYSIQAHDGCIHALT-YSDSYVISLGQDERLC 149
G C + H+ I+A+ + + + G D+ C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDS- 137
TL GH I + S + S SQDG L +WD+ T +++I + Y+ S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 138 -YVISLGQDE 146
YV G D
Sbjct: 110 NYVACGGLDN 119
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N+++T S D T ++ +E Q T GH G + +L + + + SG+ D +WD
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 115 TGACMYSIQAHDGCIHALT-YSDSYVISLGQDERLC 149
G C + H+ I+A+ + + + G D+ C
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDS- 137
TL GH I + S + S SQDG L +WD+ T +++I + Y+ S
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 138 -YVISLGQDE 146
YV G D
Sbjct: 121 NYVACGGLDN 130
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQ--LLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVW 111
S V+TGS D +KV+K D++ L ++L GH + ++ I ++ S S D + +W
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107
Query: 112 DTVTGACMYSIQAHDGCIHALT 133
D G + SI A G + A T
Sbjct: 108 DLENGKQIKSIDA--GPVDAWT 127
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 41 RAHHQPITVLECV--SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMM 98
H PI L S ++T S D +K+Y ++ L TL GH + +
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Query: 99 SGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY--SDSYVISLGQDERLCVWD 152
S S D + VWD T C+++ H + + Y + S ++S+G D+ + ++D
Sbjct: 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
+G+ D + ++ + +LL TL GH PI +L S + + S DG + ++D
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
VI G + + VY++ ++ L GH GPI+ L + + + S S DG L +W G
Sbjct: 221 VIPGPK-GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279
Query: 117 ACMYSIQAHDGCIHALTY-SDSYVISLGQDERLCVWDRFQGHLLS 160
H I + ++ D VIS D + +W Q LL+
Sbjct: 280 NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA 324
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 42 AHHQPITVLECV-SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG 100
H Q I V ++VI+ S D +++++ L+ LL +DGV + +G
Sbjct: 287 GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL----------ALSIVDGVPIFAG 336
Query: 101 SGSQDG 106
SQDG
Sbjct: 337 RISQDG 342
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N+++T S D T ++ +E Q T GH G + +L + + + SG+ D +WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 115 TGACMYSIQAHDGCIHALT-YSDSYVISLGQDERLC 149
G C + H+ I+A+ + + + G D+ C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDS- 137
TL GH I + S + S SQDG L +WD+ T +++I + Y+ S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 138 -YVISLGQDE 146
YV G D
Sbjct: 110 NYVACGGLDN 119
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N+++T S D T ++ +E Q T GH G + +L + + + SG+ D +WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 115 TGACMYSIQAHDGCIHALT-YSDSYVISLGQDERLC 149
G C + H+ I+A+ + + + G D+ C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDS- 137
TL GH I + S + S SQDG L +WD+ T +++I + Y+ S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 138 -YVISLGQDE 146
YV G D
Sbjct: 110 NYVACGGLDN 119
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N+++T S D T ++ +E Q T GH G + +L + + + SG+ D +WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 115 TGACMYSIQAHDGCIHALT-YSDSYVISLGQDERLC 149
G C + H+ I+A+ + + + G D+ C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDS- 137
TL GH I + S + S SQDG L +WD+ T +++I + Y+ S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 138 -YVISLGQDE 146
YV G D
Sbjct: 110 NYVACGGLDN 119
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 38 ESTRAHHQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGV 95
E +AH IT L+ + +I+ SQD LK++ ++D TL GH +T + I
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 96 SMMSGSGSQDGLLCVWDTVTGACMYSI----QAHDGCIHALTYSDSYVISLGQDERL 148
S S DG + +W+ TG +++ HDG +S + +G D +L
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-------NSIALFVGTDRQL 239
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 38 ESTRAHHQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGV 95
E +AH IT L+ + +I+ SQD LK++ ++D TL GH +T + I
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 96 SMMSGSGSQDGLLCVWDTVTGACMYSI----QAHDGCIHALTYSDSYVISLGQDERL 148
S S DG + +W+ TG +++ HDG +S + +G D +L
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-------NSIALFVGTDRQL 242
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 359 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 416
Query: 117 ACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTI 162
+ ++ H + + +S D + S D+ + +W+R G LL T+
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTL 463
Score = 35.4 bits (80), Expect = 0.016, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498
Query: 117 ACMYSIQAHDGCIHALTYS-DSYVISLGQDERLC-VWDRFQGHLLSTI 162
+ ++ H + + +S D I+ D++ +W+R G LL T+
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 545
Score = 34.7 bits (78), Expect = 0.024, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG 88
Query: 117 ACMYSIQAHDGCIHALTYS-DSYVISLGQDERLC-VWDRFQGHLLSTI 162
+ ++ H + + +S D I+ D++ +W+R G LL T+
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 135
Score = 34.7 bits (78), Expect = 0.024, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 154 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG 211
Query: 117 ACMYSIQAHDGCIHALTYS-DSYVISLGQDERLC-VWDRFQGHLLSTI 162
+ ++ H + + +S D I+ D++ +W+R G LL T+
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 258
Score = 34.3 bits (77), Expect = 0.030, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 129
Query: 117 ACMYSIQAHDGCIHALTYS-DSYVISLGQDERLC-VWDRFQGHLLSTI 162
+ ++ H + + +S D I+ D++ +W+R G LL T+
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 176
Score = 33.9 bits (76), Expect = 0.045, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 195 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 252
Query: 117 ACMYSIQAHDGCIHALTY--SDSYVISLGQDERLCVWDRFQGHLLSTI 162
+ ++ H ++ + + + S D+ + +W+R G LL T+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL 299
Score = 33.1 bits (74), Expect = 0.069, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
+ + S D T+K++ + QLL TL GH + + S S D + +W+ G
Sbjct: 277 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG 334
Query: 117 ACMYSIQAHDGCIHALTYS-DSYVISLGQDERLC-VWDRFQGHLLSTI 162
+ ++ H + + +S D I+ D++ +W+R G LL T+
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 381
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.005, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 44 HQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGS 103
+Q + V+ + R+I+ S D TL Y+L ++L T+ GH IT L ++ + SGS
Sbjct: 299 NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI----SGS 354
Query: 104 QDGLLCVWDT 113
DG + W +
Sbjct: 355 YDGRIMEWSS 364
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.0 bits (84), Expect = 0.005, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT 115
+IT S D T+K++ + + + TL GH ++ + SGS+DG L +W++ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG----------SGSQDGLL 108
+G D T+KV+ L FTL TT GV+ + + S D +
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTL-------TTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSDSY--VISLGQDERLCVWD 152
+WD T +C+ +++ H + + + +IS +D L +W+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.0 bits (84), Expect = 0.005, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT 115
+IT S D T+K++ + + + TL GH ++ + SGS+DG L +W++ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG----------SGSQDGLL 108
+G D T+KV+ L FTL TT GV+ + + S D +
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTL-------TTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 109 CVWDTVTGACMYSIQAHDGCIHALTYSDSY--VISLGQDERLCVWD 152
+WD T +C+ +++ H + + + +IS +D L +W+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 44 HQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGS 103
+Q + V+ + R+I+ S D TL Y+L ++L T+ GH IT L ++ + SGS
Sbjct: 299 NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI----SGS 354
Query: 104 QDGLLCVW 111
DG + W
Sbjct: 355 YDGRIXEW 362
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTG 116
++ S D TL+++ + + GH + ++ ID + SGS+D + VW T+ G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKG 138
Query: 117 ACMYSIQAHDGCIHALTY-------SDSY-VISLGQDERLCVW--DRFQ 155
C+ ++ H+ + + DS +IS G D+ + W ++FQ
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 43 HHQPITVLECVSNR--------VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG 94
H+ ++ + V N +I+ D +K + L Q+ GH I TL
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 95 VSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
+ S +DG + +W+ Y++ A D + +L +S
Sbjct: 207 DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFS 246
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 50 LECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--------DGVSMMSGS 101
++ ++ +I+GS+D T+KV+ ++ Q L TL GH ++ + + D V+++ S
Sbjct: 115 IDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII--S 171
Query: 102 GSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWD 152
D + W+ H+ I+ LT S + + S G+D + +W+
Sbjct: 172 AGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT 115
+IT S D T+K++ + + + TL GH ++ + SGS+DG L +W++ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT 115
+IT S D T+K++ + + + TL GH ++ + SGS+DG L +W++ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 41 RAHHQPITVLECVSN-RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS 99
+AH + + + + R+++ S D T+KV+ + ++ H G + + I +
Sbjct: 1048 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1107
Query: 100 GSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDE-RLCVWDRFQGH 157
S S D +W + ++ ++ H+GC+ +S D +++ G D + +W+ G
Sbjct: 1108 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Query: 158 LL 159
LL
Sbjct: 1168 LL 1169
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 105 DGLLCVWDTVTGACMYSIQAHDGCIH--ALTYSDSYVISLGQDERLCVWDRFQGHLLST 161
D L V+ TG + I+AH+ + A + DSY+ + D+++ +WD G L+ T
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 701
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
TGS D LK++ L ++ T+ GH + + S S DG L +WD +
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 119 MYSIQ 123
SI
Sbjct: 785 RKSIN 789
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Query: 2 NKSVHRIHLRTGSAGSLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGS 61
+K++ TG LLD K + E + CC S ++ + T S
Sbjct: 643 DKTLQVFKAETGE--KLLDIKAHEDE----VLCCAFSSDDSY-------------IATCS 683
Query: 62 QDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVS--MMSGSGSQDGLLCVWDTVTGACM 119
D +K++ +L+ T H + S ++ +GS D L +WD C
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 120 YSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
++ H ++ +S D + S D L +WD + +I ++
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 48 TVLECV----SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPI--TTLFIDGVSMMSGS 101
TVL C + + + S D T K++ + L L GH G + + +DG+ + +
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL--AT 1151
Query: 102 GSQDGLLCVWDTVTGACMYS 121
G +G + +W+ G ++S
Sbjct: 1152 GDDNGEIRIWNVSDGQLLHS 1171
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 41 RAHHQPITVLECVSN-RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS 99
+AH + + + + R+++ S D T+KV+ + ++ H G + + I +
Sbjct: 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 100 GSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDE-RLCVWDRFQGH 157
S S D +W + ++ ++ H+GC+ +S D +++ G D + +W+ G
Sbjct: 1101 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Query: 158 LL 159
LL
Sbjct: 1161 LL 1162
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 105 DGLLCVWDTVTGACMYSIQAHDGCIH--ALTYSDSYVISLGQDERLCVWDRFQGHLLST 161
D L V+ TG + I+AH+ + A + DSY+ + D+++ +WD G L+ T
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
TGS D LK++ L ++ T+ GH + + S S DG L +WD +
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 119 MYSIQ 123
SI
Sbjct: 778 RKSIN 782
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Query: 2 NKSVHRIHLRTGSAGSLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGS 61
+K++ TG LLD K + E + CC S ++ + T S
Sbjct: 636 DKTLQVFKAETGE--KLLDIKAHEDE----VLCCAFSSDDSY-------------IATCS 676
Query: 62 QDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVS--MMSGSGSQDGLLCVWDTVTGACM 119
D +K++ +L+ T H + S ++ +GS D L +WD C
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 120 YSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
++ H ++ +S D + S D L +WD + +I ++
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 48 TVLECV----SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPI--TTLFIDGVSMMSGS 101
TVL C + + + S D T K++ + L L GH G + + +DG+ + +
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL--AT 1144
Query: 102 GSQDGLLCVWDTVTGACMYS 121
G +G + +W+ G ++S
Sbjct: 1145 GDDNGEIRIWNVSDGQLLHS 1164
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 40 TRAHHQPI--TVLECVSNRVITGSQDHTLKVYKLEDQ--QLLFTLHGHCGPITTLFIDGV 95
AH++ I VL+ R+ T S D T+K++++E + +L+ TL GH GP+ +D
Sbjct: 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA 64
Query: 96 SMMSG----SGSQDGLLCVWDTVTG 116
G S S DG + +W G
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENG 89
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 41 RAHHQPITVLECVSN-RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS 99
R H + + + N R+++ S D T+KV+ + H G + + I +
Sbjct: 1047 RGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKF 1106
Query: 100 GSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDE-RLCVWDRFQGH 157
S S D +W ++ ++ H+GC+ +S DS +++ G D + +W+ G
Sbjct: 1107 SSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
Query: 158 LL 159
LL
Sbjct: 1167 LL 1168
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
TGS D LK++ L ++ T+ GH + + S S DG L +WD +
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Query: 119 MYSIQ 123
SI
Sbjct: 784 RKSIN 788
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVS--MMSGSGSQDGLLCVWDTV 114
+ T S D +K++ +L+ T H + S ++ +GS D L +WD
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 115 TGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQLQ 165
C ++ H ++ +S D + S D L +WD + +I ++
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVK 790
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 48 TVLECV----SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGS 103
TVL C + + + S D T K++ + L L GH G + S + +G
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGD 1152
Query: 104 QDGLLCVWDTVTGACMY 120
+G + +W+ G ++
Sbjct: 1153 DNGEIRIWNVSNGELLH 1169
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 40 TRAHHQPI--TVLECVSNRVITGSQDHTLKVYKLEDQ--QLLFTLHGHCGPITTLFIDGV 95
AH++ I VL+ R+ T S D T+K++++E + +L+ TL GH GP+ +D
Sbjct: 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA 62
Query: 96 SMMSG----SGSQDGLLCVWDTVTG 116
G S S DG + +W G
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENG 87
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.7 bits (78), Expect = 0.024, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 42 AHHQPI--TVLECVSNRVITGSQDHTLKVYKLEDQ--QLLFTLHGHCGPITTLFIDGVSM 97
AH++ I VL+ R+ T S D T+K++++E + +L+ TL GH GP+ +D
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR--VDWAHP 64
Query: 98 MSG----SGSQDGLLCVWDTVTG 116
G S S DG + +W G
Sbjct: 65 KFGTILASCSYDGKVLIWKEENG 87
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 40 TRAHHQPI--TVLECVSNRVITGSQDHTLKVYKLEDQ--QLLFTLHGHCGPITTLFIDGV 95
AH++ I V++ R+ T S D T+K++++E + +L+ TL GH GP+ +D
Sbjct: 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA 62
Query: 96 SMMSG----SGSQDGLLCVWDTVTG 116
G S S DG + +W G
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENG 87
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 54 SNRVITGSQDHTLKVYKLE-DQQLLFTLHGHCGPITT--LFIDGVSMMSGSGSQDGLLCV 110
+N I+GS D T++++ L + + T HGH G I + F DG G+GS DG +
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF--GTGSDDGTCRL 275
Query: 111 WDTVTG 116
+D TG
Sbjct: 276 FDMRTG 281
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 118 CMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQGHLLSTIQL 164
C ++Q H G +++L ++ ++++S QD RL VW+ I+L
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL 106
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 61 SQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMY 120
+Q T + D TL GH G + +L S SQDG L VW+ +T +
Sbjct: 43 AQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH 102
Query: 121 SIQAH 125
+I+ H
Sbjct: 103 AIKLH 107
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 42 AHHQPITVLECVS--NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS 99
H +P+T ++ + + + S+D + V+ + + L TL GH G I ++ +D +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 100 GSGSQDGLLCVWDTVTGACM 119
+GS D + +WD G C+
Sbjct: 90 VTGSADYSIKLWDVSNGQCV 109
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 80 LHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DS 137
L GH P+T + + + S S+D VW ++ G + ++ H G I ++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 138 YVISLGQDERLCVWDRFQGHLLST 161
Y ++ D + +WD G ++T
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVAT 111
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 40 TRAHHQPI--TVLECVSNRVITGSQDHTLKVYKLEDQ--QLLFTLHGHCGPITTLFIDGV 95
AH++ I V + R T S D T+K++++E + +L+ TL GH GP+ +D
Sbjct: 5 ANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA 62
Query: 96 SMMSG----SGSQDGLLCVWDTVTG 116
G S S DG + +W G
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENG 87
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSG-------------S 101
N + +GS+D T+ V+++ D L+ L P+ TL +G + G S
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLRE---PVITL--EGHTKRVGIVAWHPTAQNVLLS 149
Query: 102 GSQDGLLCVWDTVTGACMYSI--QAHDGCIHALTYS-DSYVISLG-QDERLCVWDRFQGH 157
D ++ VWD TGA + ++ H I+++ +S D +I +D+R+ V + +G
Sbjct: 150 AGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209
Query: 158 LLS 160
+++
Sbjct: 210 VVA 212
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 56 RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS--GSGSQDGLLCVWDT 113
+V T S D T K++ L Q + + H P+ T+ S +GS D L WDT
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 114 VTGACMYSIQAHDGC 128
+ M +Q + C
Sbjct: 159 RSSNPMMVLQLPERC 173
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 55 NRVITGSQDHTLKVYKLED-------QQLLFTLHGHCGP--ITTLFIDGVSMMSGSGSQD 105
N + +GS+D T+ V+++ D ++ + TL GH I +++ +G D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-D 153
Query: 106 GLLCVWDTVTGACMYSI--QAHDGCIHALTYS-DSYVISLG-QDERLCVWDRFQGHLLS 160
++ VWD TGA + ++ H I+++ +S D +I +D+R+ V + +G +++
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 79 TLHGHCGPITTLFIDGVS-MMSGSGSQDGLLCVWDTVT-GACMYSIQAHDGCIHALTYS- 135
T+ H + L + S + +GS D + +WD ++S ++H I + +S
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
Query: 136 --DSYVISLGQDERLCVWD 152
++ + S G D RL VWD
Sbjct: 332 HNETILASSGTDRRLHVWD 350
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY--SD 136
TL GH + L + SG D ++ +WD + ++ H+ + A+ +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 137 SYVISLG---QDERLCVWDRFQGHLLSTI 162
S +++ G D+++ W+ G ++T+
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTV 300
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 79 TLHGHCGPITTLFIDGVS-MMSGSGSQDGLLCVWDTVT-GACMYSIQAHDGCIHALTYS- 135
T+ H + L + S + +GS D + +WD ++S ++H I + +S
Sbjct: 274 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 333
Query: 136 --DSYVISLGQDERLCVWD 152
++ + S G D RL VWD
Sbjct: 334 HNETILASSGTDRRLHVWD 352
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 79 TLHGHCGPITTLFIDGVS-MMSGSGSQDGLLCVWDTVT-GACMYSIQAHDGCIHALTYS- 135
T+ H + L + S + +GS D + +WD ++S ++H I + +S
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Query: 136 --DSYVISLGQDERLCVWD 152
++ + S G D RL VWD
Sbjct: 336 HNETILASSGTDRRLHVWD 354
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 0.80, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 56 RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT 115
R+I+GS D+T+ +++ + T H + ++ + + S DG + +++ V
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 116 GACMYSIQ-------AHDGCIHALTYS--DSYVISLGQDERLCVWD 152
G + AH G + LT+S + + S D+ + +W+
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 24 MQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLL--FTLH 81
+V+EE C V ++ V + + S D T+K+Y+ E+ + TL
Sbjct: 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 82 GHCGPITTLFIDGVSMMSGSGSQDGLLCVW 111
GH + +L D S S D + +W
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
pdb|3JRU|A Chain A, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 490
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 113 TVTGACMYSI--------QAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTI 162
T+TGACM ++ HD + L + +V + RL +WD +QG L ST
Sbjct: 371 TLTGACMVALGHQTAGLMSKHDDLANELLAAGEHVFD--RAWRLPLWDEYQGLLDSTF 426
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 100 GSGSQDGLLCVWDTVTGACMYS-IQAHDG---CIHALTYSDSYVISLGQDERLCVWD 152
+G QDG+L +WD G S ++AH+ +H + ++ + +D L WD
Sbjct: 253 ATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 100 GSGSQDGLLCVWDTVT-GACMYSIQAHDGCIHALTYS---DSYVISLGQDERLCVWD 152
+GS D + +WD ++S ++H I + +S ++ + S G D RL VWD
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAH 125
+ +G G+ D + +W+ +GAC+ ++ AH
Sbjct: 303 LATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRF 154
++SG G L +W T A + ++ H + +LT S + V S DE L +W F
Sbjct: 346 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 405
Query: 155 Q 155
+
Sbjct: 406 E 406
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAH 125
+ +G G+ D + +W+ +GAC+ ++ AH
Sbjct: 292 LATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRF 154
++SG G L +W T A + ++ H + +LT S + V S DE L +W F
Sbjct: 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394
Query: 155 Q 155
+
Sbjct: 395 E 395
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 100 GSGSQDGLLCVWDTVT-GACMYSIQAHDGCI---HALTYSDSYVISLGQDERLCVWD 152
+GS D + +WD +++ ++H I H ++++ + S G D RL VWD
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 100 GSGSQDGLLCVWDTVT-GACMYSIQAHDGCI---HALTYSDSYVISLGQDERLCVWD 152
+GS D + +WD +++ ++H I H ++++ + S G D RL VWD
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3MAB|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes, Triclinic Form
pdb|3MAB|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes, Triclinic Form
Length = 93
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 102 GSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY 134
GS++ L +W+ + CM + A +G + + +
Sbjct: 35 GSKEAFLRIWENDSSVCMSELYALEGAVQGIRW 67
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAH 125
+ +G G+ D + +W+ +GAC+ ++ AH
Sbjct: 212 LATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 60 GSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVS-MMSGSGSQDGLLCVWDTVTGAC 118
G+ D ++++ + L + H + L+ ++SG G L +W T A
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276
Query: 119 MYSIQAHDGCIHALTYSD--SYVISLGQDERLCVWDRFQ 155
+ ++ H + +LT S + V S DE L +W F+
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
>pdb|2L17|A Chain A, An Arsenate Reductase In The Reduced State
pdb|2L18|A Chain A, An Arsenate Reductase In The Phosphate Binding State
Length = 134
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 21 FKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTL 80
F K ++ +T C +ES+R H I ++E V I+G ++ + +D ++ +L
Sbjct: 24 FAKTLGAGKIAVTSCGLESSRVHPTAIAMMEEVGID-ISGQTSDPIENFNADDYDVVISL 82
Query: 81 HGHCG 85
G CG
Sbjct: 83 CG-CG 86
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 112 DTVTGACMYSIQAHDGCIHALTYSDSY---VISLGQDERLCVWD--RFQGHLLSTIQLQG 166
D +G+C + +Q H I A+++S Y + + D R+ +WD R G L++ Q G
Sbjct: 172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,832,664
Number of Sequences: 62578
Number of extensions: 177732
Number of successful extensions: 709
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 294
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)