RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16373
(166 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 69.0 bits (167), Expect = 4e-15
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 43 HHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSG 102
+++GS+D T+K++ + L TL GH + + S
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265
Query: 103 SQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWD 152
+ D L VWD CM ++ AH+ + +L + YV++ D+ + VW+
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 54.0 bits (128), Expect = 7e-10
Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%)
Query: 22 KKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLH 81
K +++ E T C K + + + + S D T++V+ + ++ L
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 82 GHCGPITTLFIDGVSMMSG--------------------SGSQDGLLCVWDTVTGACMYS 121
H + + S S SGS+D + +WD TG C+ +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242
Query: 122 IQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+ HD + + + +++S D+ L VWD + T+
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Score = 43.6 bits (101), Expect = 3e-06
Identities = 17/94 (18%), Positives = 34/94 (36%)
Query: 73 DQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHAL 132
+ L GH P+T + V + S S+D + VWD TG +++ H + +
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 133 TYSDSYVISLGQDERLCVWDRFQGHLLSTIQLQG 166
++ S + + + + G
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 99
Score = 42.0 bits (97), Expect = 1e-05
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 41 RAHHQPITVLEC--VSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMM 98
H P+T + V + +++ S+D T+KV+ E TL GH + + D +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 99 SGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQG 156
S S D + +WD C+ ++ HD + +++ +++S +D+ + +W+ G
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 157 HLLSTIQ 163
+ + T
Sbjct: 134 YCVKTFT 140
Score = 39.3 bits (90), Expect = 9e-05
Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 22/132 (16%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
+ +++ S+D T+K+++++ + T GH + + + + S S D + VW
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Query: 114 VTGACMYSIQAHDGCIHALTY----------------------SDSYVISLGQDERLCVW 151
T C ++ H + +++ +++S +D+ + +W
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232
Query: 152 DRFQGHLLSTIQ 163
D G L T+
Sbjct: 233 DVSTGMCLMTLV 244
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 56.7 bits (135), Expect = 1e-10
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 37 VESTRAHHQPITVLECV--SNRVITGSQDHTLKV--YKLEDQQLLFTLHGHCGPITTLFI 92
++ H I + N TGS D T ++ + + + + ++ IT++
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 93 DGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSD--SYVISLGQDERLCV 150
+ +G D VWD + + HD + L +D V + D L +
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 151 WD 152
W+
Sbjct: 339 WN 340
Score = 49.0 bits (115), Expect = 5e-08
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 22 KKMQVEEEMTLTCCKVESTRAHHQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFT 79
++ + S IT + + ++ G D V+
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 80 LHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
L GH ++ L + M +GS D L +W+
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 48.6 bits (114), Expect = 6e-08
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 52 CVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--DGVSMMSGSGSQDGLLC 109
+ ++G+ D + K++ + + T GH I + +G + +GS L
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 110 VWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
YS I ++++S +++ D VWD + +
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Score = 37.8 bits (86), Expect = 3e-04
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 2/139 (1%)
Query: 21 FKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTL 80
++ E N+++T S D T ++ +E Q T
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 81 HGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSY 138
GH G + +L + + + SG+ D +WD G C + H+ I+A+ + +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 139 VISLGQDERLCVWDRFQGH 157
+ D ++D
Sbjct: 241 FATGSDDATCRLFDLRADQ 259
Score = 35.1 bits (79), Expect = 0.002
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 75 QLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY 134
+ TL GH I + S + S SQDG L +WD+ T +++I + Y
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 135 SDSY 138
+ S
Sbjct: 106 APSG 109
Score = 25.9 bits (55), Expect = 3.0
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 41 RAHHQPITVLEC--VSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL 90
R H I + S +++ SQD L ++ + + + T
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 54.5 bits (129), Expect = 5e-10
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 33 TCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI 92
TC V + H + I L+ V++GS D+T++++ +E L L GH + +
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226
Query: 93 DGVSMMSGSGSQDGLLCVWDTVTGA---------CMYSIQAHDGCIHALTYSDSYVISLG 143
D ++SG+ DG + VWD V C+ ++ H G + L + + ++S
Sbjct: 227 DNKRIVSGAY--DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284
Query: 144 QDERLCVWD 152
D+ + +WD
Sbjct: 285 HDDTILIWD 293
Score = 40.2 bits (92), Expect = 4e-05
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 36 KVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGV 95
++ + + L+ ++++G +D+T+K++ + L GH G + L D
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66
Query: 96 SMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWD 152
+++GS VWD TG + ++ H + L +++ +++ +D + VWD
Sbjct: 67 VIITGSSDSTV--RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Score = 38.7 bits (88), Expect = 1e-04
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 75 QLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTY 134
Q + + L D ++SG +D + +WD T C + H G + L Y
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 135 SDSYVISLGQDERLCVWDRFQGH 157
+ +I+ D + VWD G
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGE 86
Score = 34.4 bits (77), Expect = 0.003
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQG 156
S S D + VW+T T + ++ H I L Y D V+S D + +WD G
Sbjct: 149 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 208
Query: 157 HLLSTIQ 163
L ++
Sbjct: 209 ACLRVLE 215
Score = 26.7 bits (57), Expect = 1.2
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 125 HDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
++ L Y D ++S +D + +WD+ +
Sbjct: 14 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 54.0 bits (128), Expect = 1e-09
Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 22/166 (13%)
Query: 9 HLRTGSAGSLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSN--RVITGSQDHTL 66
++ GS + + + + ES H + + + V++GS D ++
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278
Query: 67 KVYKLEDQQLLFTLHGHC------------GPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
K++ L++ + ++ SGS+D + WD
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338
Query: 115 TGACMYSIQAHDGCIHALTYSDS--------YVISLGQDERLCVWD 152
+G + +Q H + ++ ++ + D + +W
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 43.6 bits (101), Expect = 3e-06
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLH-------GHCGP 86
C S + V + GS D ++V+ E L+ L GH
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256
Query: 87 ITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIH--------------AL 132
+ ++ SGS D + +W+ + + A
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316
Query: 133 TYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
T +D Y++S +D + WD+ G+ L +Q
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Score = 25.5 bits (54), Expect = 3.9
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 36 KVESTRAHHQPITVLECVS--------NRVITGSQDHTLKVYKLE 72
+ + H + + + N TGS D +++K +
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 51.4 bits (121), Expect = 6e-09
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 43 HHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSG 102
H + ++ RV++G+ D +KV+ E + L TL GH + +L DG+ ++SGS
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS- 194
Query: 103 SQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGH 157
D + VWD TG C++++ H + D+ ++S D + +WD G
Sbjct: 195 -LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 248
Score = 48.3 bits (113), Expect = 9e-08
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFID 93
+ + + H + L+ V++GS D +++V+ +E + TL GH + + +
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
Query: 94 GVSMMSGSGSQDGLLCVWDTVTGACMYSIQ---AHDGCIHALTYSDSYVISLGQDERLCV 150
++SG+ D + +WD TG C+ ++Q H + L ++ ++VI+ D + +
Sbjct: 227 DNILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284
Query: 151 WDRFQGHLLSTIQ 163
WD G + +
Sbjct: 285 WDLKTGEFIRNLV 297
Score = 44.8 bits (104), Expect = 1e-06
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 70 KLEDQQLLFTLHGHCGPITTLF-IDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGC 128
+ + + L GH + T G ++ SGS D L VW VTG C+ ++ H G
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIV--SGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 129 IHALTYSDSYVISLGQDERLCVWDRFQGH 157
+ + D+ +IS D L VW+ G
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGE 88
Score = 42.9 bits (99), Expect = 6e-06
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 41 RAHHQPI-TVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMS 99
+ H + T L+ NR+++GS D+TLKV+ + L TL GH G + + + ++S
Sbjct: 13 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 100 GSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGH 157
GS + + +T C++++ H + + + V+S +D L VWD G
Sbjct: 73 GSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Score = 40.6 bits (93), Expect = 3e-05
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPI-TTLFI 92
+ + H + +E N +++G+ D T+K++ ++ Q L TL G +
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266
Query: 93 DGVSMMSGSGSQDGLLCVWDTVTGACMYSIQA-----HDGCIHALTYS-DSYVISLG--- 143
+ S DG + +WD TG + ++ G + + S V ++G
Sbjct: 267 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Query: 144 --QDERLCVWD 152
++ +L V D
Sbjct: 327 GTEETKLLVLD 337
Score = 37.1 bits (84), Expect = 5e-04
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFID 93
+ + H + + RV++GS+D TL+V+ +E Q L L GH + +
Sbjct: 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQ 144
Query: 94 GVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDR 153
SG+ D ++ VWD T C++++Q H +++L + +V+S D + VWD
Sbjct: 145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 204
Query: 154 FQGHLLSTIQ 163
G+ + T+
Sbjct: 205 ETGNCIHTLT 214
Score = 34.8 bits (78), Expect = 0.003
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 111 WDTVTGACMYSIQAHDGCI-HALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
W ++ HD + L + + ++S D L VW G L T+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 46.7 bits (109), Expect = 3e-07
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 2 NKSVHRIHLRTGSAGSLLDFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVS---NRVI 58
+H+I L +G A L + + E A+H+ + + + +
Sbjct: 215 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI-DGVSMMSGSGSQDGLLCVWDTVTGA 117
+ + V + + L + D ++ + D L + D +G
Sbjct: 275 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334
Query: 118 CMYSIQAHDGCIHALTYSDS 137
+ S+ +T +D
Sbjct: 335 ELRSVNQLGHGPQVITTADM 354
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 46.0 bits (107), Expect = 4e-07
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Query: 47 ITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL-FIDGVSMMSGSGSQD 105
IT L+ N VITG+ D ++VY +++ L L GH G + L + G ++SGS +
Sbjct: 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 75
Query: 106 GLLCVWDT--VTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTI 162
+ T + Y+++ +D L VW + +
Sbjct: 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134
Score = 43.0 bits (99), Expect = 5e-06
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 78 FTLHGHCGPITT-LFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSD 136
TL GH + T L + ++ +G+ D ++ V+D++ + + HDG + AL Y+
Sbjct: 6 TTLRGHMTSVITCLQFEDNYVI--TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 137 SYVISLGQDERLCVWDRFQGH 157
++ G +R +
Sbjct: 64 GGILVSGSTDRTVRVWDIKKG 84
Score = 26.8 bits (57), Expect = 1.6
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 125 HDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
I L + D+YVI+ D+ + V+D L +
Sbjct: 12 MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS 50
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.1 bits (97), Expect = 1e-05
Identities = 13/119 (10%), Positives = 30/119 (25%), Gaps = 13/119 (10%)
Query: 37 VESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTL------HGHCGPITTL 90
+ +AH I + ++ ++ S D LKV+ + H + +
Sbjct: 7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 91 FIDGVSMMSG-------SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISL 142
+ + S G L + + + +L
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Score = 35.6 bits (80), Expect = 0.002
Identities = 12/64 (18%), Positives = 18/64 (28%)
Query: 72 EDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHA 131
Q H + +L + S DG L WD T + ++ H I
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 132 LTYS 135
Sbjct: 337 EEDI 340
Score = 31.4 bits (69), Expect = 0.042
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 123 QAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHLLSTIQ 163
+AHD I +++ +S+ +S D L VWD +
Sbjct: 11 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD 51
Score = 31.4 bits (69), Expect = 0.045
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTL-FIDGVSMMSGSGSQDGLLCVWD 112
+ + D L+ + ++ ++ + TL+ HC I I V S ++ G+ V
Sbjct: 301 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360
Query: 113 TVTGACMYSIQAHDGCIHALTYSDS 137
G + + + S
Sbjct: 361 LKKGWRSGMGADLNESLCCVCLDRS 385
Score = 24.4 bits (51), Expect = 9.2
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
V T S L Y++ + + + + S + + +
Sbjct: 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Query: 115 TGAC 118
Sbjct: 140 VATD 143
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 41.3 bits (95), Expect = 2e-05
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
++ +D+ L ++ +F + + I +GS D V++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Query: 114 V 114
+
Sbjct: 336 I 336
Score = 40.2 bits (92), Expect = 5e-05
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWD 152
S +D LL W T GA ++ + + S D Y+++ D++ V++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 29.0 bits (63), Expect = 0.28
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDERLCVWDRFQ 155
M D L+ + ++ H + A+T S + + G + VWD
Sbjct: 23 MQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISH 81
Query: 156 GHLLSTIQL 164
S +
Sbjct: 82 PGNKSPVSQ 90
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 41.0 bits (94), Expect = 3e-05
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Query: 55 NRVITGSQDHTLKVYKLEDQQ--LLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
++ +H + +Y+ + + L H G +T + S + D VW
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Query: 113 TVTGACMYSIQAHDGCIH 130
++
Sbjct: 80 LKGRTWKPTLVILRINRA 97
Score = 37.9 bits (86), Expect = 3e-04
Identities = 6/61 (9%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 101 SGSQDGLLCVWDTVTG--ACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQG 156
+ + +++ ++ ++ H+G + + ++ + +++ G D VW
Sbjct: 24 ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 83
Query: 157 H 157
Sbjct: 84 T 84
Score = 34.4 bits (77), Expect = 0.005
Identities = 10/104 (9%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
+ ++ D ++ + + G G++ + D +
Sbjct: 255 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314
Query: 115 TGACMYSIQAHDGCIHALTYSD------SYVISLGQDERLCVWD 152
H + ++ S + G D + +WD
Sbjct: 315 AAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
Score = 30.6 bits (67), Expect = 0.083
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
Query: 53 VSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWD 112
+ + T K+ +L+F CG + + S D +C+ D
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229
Query: 113 TVTGACMYSIQAHDGCIHALTYS-DSYVISLGQDERLCVWD 152
+ ++ + + A+T+ +S +++ G D ++
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT 270
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 40.3 bits (92), Expect = 4e-05
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFID 93
+ + + S + T D T++V+ + + + + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302
Query: 94 GVSMMSG---SGSQDGLLCVWD 112
V+ +G S S DG L ++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYE 324
Score = 37.6 bits (85), Expect = 4e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS-----DSYVISLGQDERLCVWD 152
+ D + VWD T C+ + + +ISL D L ++
Sbjct: 268 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 24.1 bits (50), Expect = 9.8
Identities = 7/81 (8%), Positives = 25/81 (30%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
S + +G + + V+ + ++ + + +S +S L V +
Sbjct: 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 114 VTGACMYSIQAHDGCIHALTY 134
++ + ++
Sbjct: 137 RDNFGVFISWDSGNSLGEVSG 157
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 40.3 bits (93), Expect = 4e-05
Identities = 14/124 (11%), Positives = 24/124 (19%), Gaps = 18/124 (14%)
Query: 61 SQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDG-----VSMMSG---SGSQDGLLCVWD 112
+ V L G + G S G + + V+D
Sbjct: 43 AGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102
Query: 113 TVTGACMYSIQAHDGCI---------HALTYSDSYV-ISLGQDERLCVWDRFQGHLLSTI 162
VT + I+ D S + + L
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT 162
Query: 163 QLQG 166
+
Sbjct: 163 KSAS 166
Score = 31.9 bits (71), Expect = 0.030
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 58 ITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI-DGVSMMSGSGSQDGLLCVWDTVTG 116
+ Q + + DG S + + +L ++D +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347
Query: 117 ACMYSIQAHDG 127
S++ G
Sbjct: 348 QDQSSVELDKG 358
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 40.1 bits (92), Expect = 5e-05
Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 9/138 (6%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLL---FTLHGHCGPITTL 90
+ I + T + L+ + F
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 91 FIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS--DSYVISLGQDERL 148
+ + G L +D + + D + + + + G L
Sbjct: 260 SPKDPNQIYGV---LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDL 315
Query: 149 CVWDRFQGHLLSTIQLQG 166
V++ + I+L G
Sbjct: 316 AVFNPDTLEKVKNIKLPG 333
Score = 33.6 bits (75), Expect = 0.007
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 2/90 (2%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLL--FTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVW 111
+I + + L V + + + GP T + + G +
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 112 DTVTGACMYSIQAHDGCIHALTYSDSYVIS 141
D T + S+ IS
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97
Score = 25.5 bits (54), Expect = 3.7
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITT 89
+++ G + L V+ + + + + G ++T
Sbjct: 303 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 39.6 bits (90), Expect = 8e-05
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 81 HGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT-GACMYSIQAHDGCIHALTYS-DSY 138
+ + +GS D + ++ + ++ AH ++ L + S
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271
Query: 139 VISLGQDERLCVWD 152
++S G D + W+
Sbjct: 272 LVSSGADACIKRWN 285
Score = 38.0 bits (86), Expect = 2e-04
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 73 DQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHAL 132
++L T+ GH IT L ++ + SGS DG + W + + Q H I +L
Sbjct: 2 HDEVLKTISGHNKGITALTVNPLI----SGSYDGRIMEWSSSSMH-----QDHSNLIVSL 52
Query: 133 TYSDSYVISLGQDERLCVWDRFQGH 157
S + S + + H
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKH 77
Score = 36.5 bits (82), Expect = 7e-04
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 20 DFKKMQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLED-QQLLF 78
+ + S + + E + V TGS D + +Y ++ +++
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 79 TLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
L+ H + L + S + S D + W+ V
Sbjct: 253 ALNAHKDGVNNLLWETPSTLV-SSGADACIKRWNVV 287
Score = 26.1 bits (55), Expect = 2.1
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 9/128 (7%)
Query: 41 RAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--DGVSMM 98
H++ IT L N +I+GS D + + H I +L
Sbjct: 10 SGHNKGITALTV--NPLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSS 62
Query: 99 SGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGHL 158
+ + G+ A++ A+ +D ++ L +
Sbjct: 63 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP 122
Query: 159 LSTIQLQG 166
S + L
Sbjct: 123 GSAVSLSQ 130
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 39.5 bits (90), Expect = 9e-05
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 101 SGSQDGLLCVWDTVTGACMYSIQAH---DGCIHALTYSDSYVISLGQDERLCVWD 152
S S D + +W+ T +I + + ++ ++S+ + + +
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 36.4 bits (82), Expect = 9e-04
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCG-PITTLFIDGVSMMSGSGSQDGLLCVWD 112
++ + S D T+K++ + ++ T+ L I S S +G + +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 33.3 bits (74), Expect = 0.010
Identities = 9/104 (8%), Positives = 19/104 (18%), Gaps = 1/104 (0%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDT 113
+++ + ++ + H T SG G + +WDT
Sbjct: 29 GDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87
Query: 114 VTGACMYSIQAHDGCIHALTYSDSYVISLGQDERLCVWDRFQGH 157
+ S
Sbjct: 88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 37.3 bits (84), Expect = 4e-04
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 75 QLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSI-QAHDGCIHALT 133
+ +GH IT L S +G + WD TG H I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 134 YSDSYVISLGQDERLCVWDRFQGHLL 159
+ + + G +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGV 88
Score = 33.0 bits (73), Expect = 0.011
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Query: 43 HHQPITVLECVSN--RVITGSQDHTLKVYKLEDQQLLFTL-HGHCGPITTLFIDGVSMMS 99
H++ IT L ++ + + + + + + H IT + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 100 GSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALTYS 135
D L V +G A+ L +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
Score = 33.0 bits (73), Expect = 0.012
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 97 MMSGSGSQDGLLCVWDTVTGACMYSIQAHDGCIHALT----YSDSYVISLGQDERLCVWD 152
+ +GS D + VW+ + I + ++ +++ ++S GQD + W+
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 29.6 bits (64), Expect = 0.18
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLED--QQLLFTLHGHCGPITTLF 91
+ + R+ TGS D+++ V+ + + H
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 275
Query: 92 IDGVSMMSGSGSQDGLLCVWD 112
I S QD + W+
Sbjct: 276 IWLNETTIVSAGQDSNIKFWN 296
Score = 29.2 bits (63), Expect = 0.20
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 116 GACMYSIQAHDGCIHALTYS--DSYVISLGQDERLCVWDRFQGHLLSTIQ 163
G+ H+ I AL+ S + S + + WD G
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 36.8 bits (83), Expect = 7e-04
Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 59 TGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGAC 118
G ++ K + +L P+ ++ + DG++ W+ T
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285
Query: 119 MYSIQAHDG-CIHALTYSDSYVISLGQDERLCVWDRF 154
+ + + + + SD+ + D+
Sbjct: 286 IKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322
Score = 31.7 bits (70), Expect = 0.030
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTL---HGHCGPITTL-FIDGVSMMSGSGSQDGLLC 109
+ ++ S D +L VYK + Q L + P+ FID + G+ G +
Sbjct: 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82
Query: 110 VWDTVTGACMYSIQAHDGCIH 130
D + ++ ++ +
Sbjct: 83 KVDLIGSPSFQALTNNEANLG 103
Score = 29.8 bits (65), Expect = 0.12
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 75 QLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQA---HDGCIHA 131
Q++ I+ + I + S DG L V+ A + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 132 LTYSDS 137
+ D+
Sbjct: 62 CNFIDN 67
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 35.2 bits (79), Expect = 0.002
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 57 VITGSQDHTLKVYKLEDQQLL--FTLHGHCGPITTLFI--DGVSMMSGSGSQDGLLCVWD 112
++ ++ L V E + T+ + G + + ++ L D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG-RIAYATVNKSESLVKID 62
Query: 113 TVTGACMYSIQAHDGCIHALTYSDSYV 139
VTG + I + + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAAL 89
Score = 28.6 bits (62), Expect = 0.31
Identities = 9/94 (9%), Positives = 21/94 (22%), Gaps = 1/94 (1%)
Query: 34 CCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFID 93
+ R + + L+ + LE + + ++ +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVS 288
Query: 94 GVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDG 127
G G L +D T +
Sbjct: 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 34.1 bits (76), Expect = 0.005
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 57 VITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFI--DGVSMMSGSGSQDGLLCVWDTV 114
+ L Y ++ +++ +T L + D ++M DG + +
Sbjct: 291 YQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKD--DGKIYTFPLE 344
Query: 115 TGAC 118
Sbjct: 345 KPED 348
Score = 24.8 bits (52), Expect = 5.7
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 54 SNRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPI 87
V+ D + + LE + T+ P+
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 33.0 bits (74), Expect = 0.010
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
+ + QQ + L + D + G + L+ V D
Sbjct: 250 QVWVYDLKSKQRVARWDLAQQKVEPLVS-----IQVSEDDKPLFYGLTATSDLV-VMDAR 303
Query: 115 TGACMYSIQAHDGCIHAL 132
TGA + + L
Sbjct: 304 TGALQHVEKQIGNTSSLL 321
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 31.8 bits (70), Expect = 0.027
Identities = 7/104 (6%), Positives = 23/104 (22%)
Query: 24 MQVEEEMTLTCCKVESTRAHHQPITVLECVSNRVITGSQDHTLKVYKLEDQQLLFTLHGH 83
+ ++ + + +T+ + ++ +
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 84 CGPITTLFIDGVSMMSGSGSQDGLLCVWDTVTGACMYSIQAHDG 127
P + + S + V DT T ++
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 128
Score = 26.5 bits (58), Expect = 0.94
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 56 RVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTVT 115
++ G + + + + + L T+ G ++I GV GS ++ L V D +
Sbjct: 14 HLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGV--DPGSEAEGSGLKVGDQIL 71
Query: 116 GACMYSIQ--AHDGCIHALTYSDSYVISLGQDERL 148
S HD + L S ++++ RL
Sbjct: 72 EVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase
non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId:
9606]}
Length = 106
Score = 25.3 bits (55), Expect = 2.0
Identities = 9/60 (15%), Positives = 20/60 (33%)
Query: 55 NRVITGSQDHTLKVYKLEDQQLLFTLHGHCGPITTLFIDGVSMMSGSGSQDGLLCVWDTV 114
N I +++ E+ + F + G + + V+ + + L D V
Sbjct: 1 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQV 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.420
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,621
Number of extensions: 24434
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 87
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.6 bits)