BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16375
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGLS E WSI KN EL ++ G
Sbjct: 348 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGY 407
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 408 FTLVPAIQ 415
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGLS E WSI KN EL ++ G
Sbjct: 348 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGY 407
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 408 FTLVPAIQ 415
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGLS E WSI KN EL ++ G
Sbjct: 348 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGY 407
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 408 FTLVPAIQ 415
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGLS E WSI KN EL ++ G
Sbjct: 348 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGY 407
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 408 FTLVPAIQ 415
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGLS E WSI KN EL ++ G
Sbjct: 348 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVLIGY 407
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 408 FTLVPAIQ 415
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGLS E WSI KN EL ++ G
Sbjct: 348 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGY 407
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 408 FTLVPAIQ 415
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 21 VLPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
+ PY ++++GLEN+LVLTKS++S P L+ K+RIAQGL E W I KN EL ++ G
Sbjct: 346 IFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLRNESWFIMKNMATELGIILIGY 405
Query: 81 LTFFPVIQ 88
T P IQ
Sbjct: 406 FTLVPAIQ 413
>sp|Q9Y7D2|HMDH_ASPTE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus PE=3 SV=2
Length = 1048
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 21/79 (26%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHL---------------DSKIR------IAQGLSK 60
+PY ++ VG E + LT++++ + L DS+ I + +
Sbjct: 288 IPYLVLTVGFEKPIQLTRAVLCVSEELWGGGQRQVPNGASSDDSRQNQLIPNIIQLAVDR 347
Query: 61 EGWSITKNFFLELTVLTAG 79
EGW I +++ LE+ L G
Sbjct: 348 EGWYIVRSYLLEIGALALG 366
>sp|Q0C8L9|HMDH_ASPTN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_09965
PE=3 SV=1
Length = 1048
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 21/79 (26%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHL---------------DSKIR------IAQGLSK 60
+PY ++ VG E + LT++++ + L DS+ I + +
Sbjct: 288 IPYLVLTVGFEKPIQLTRAVLCVSEELRGGWQRPVPNGASSDDSRQSQLIPNIIQLAVDR 347
Query: 61 EGWSITKNFFLELTVLTAG 79
EGW I +++ LE+ L G
Sbjct: 348 EGWYIVRSYLLEIGALALG 366
>sp|A7Z064|HMDH_BOVIN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Bos taurus
GN=HMGCR PE=2 SV=2
Length = 888
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F+++V L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLVDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|P09610|HMDH_MESAU 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus
auratus GN=HMGCR PE=1 SV=1
Length = 887
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|Q5R6N3|HMDH_PONAB 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pongo abelii
GN=HMGCR PE=2 SV=1
Length = 888
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens
GN=HMGCR PE=1 SV=1
Length = 888
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|Q29512|HMDH_RABIT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus
cuniculus GN=HMGCR PE=3 SV=1
Length = 888
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|Q01237|HMDH_MOUSE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus
GN=Hmgcr PE=2 SV=3
Length = 887
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|P51639|HMDH_RAT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Rattus
norvegicus GN=Hmgcr PE=1 SV=2
Length = 887
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|Q1W675|HMDH_PIG 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Sus scrofa
GN=HMGCR PE=2 SV=1
Length = 885
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T + +E V+ G +
Sbjct: 125 LPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|P20715|HMDH_XENLA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Xenopus laevis
GN=hmgcr PE=2 SV=1
Length = 883
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 22 LPYFIIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLL 81
LP+F++++ L L K +S S + + IA+G++ G + T +E V+ G +
Sbjct: 125 LPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTFTLEALVECLVIGVGTM 184
Query: 82 T 82
+
Sbjct: 185 S 185
>sp|D2Q9C6|ARC_BIFDB AAA ATPase forming ring-shaped complexes OS=Bifidobacterium dentium
(strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) GN=arc
PE=3 SV=1
Length = 529
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 26 IIIVGLENILVLTKSIISIPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGL 80
++++G N + + + P LD KIR+ + +K+ I +++ + LT G+
Sbjct: 358 VMVIGASNRIDMIDPAVLRPGRLDVKIRVERPKAKQAEQIIRHYLTDDLPLTPGI 412
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.147 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,218,383
Number of Sequences: 539616
Number of extensions: 939399
Number of successful extensions: 3026
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3004
Number of HSP's gapped (non-prelim): 23
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)