Query psy16375
Match_columns 89
No_of_seqs 113 out of 200
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:41:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 97.0 0.00041 1.4E-08 57.8 3.8 84 5-88 313-397 (741)
2 2v50_A Multidrug resistance pr 92.6 0.021 7.3E-07 48.6 -0.1 77 6-82 381-459 (1052)
3 3aqp_A Probable secdf protein- 92.2 0.047 1.6E-06 45.4 1.6 80 6-85 610-692 (741)
4 4dx5_A Acriflavine resistance 89.9 0.12 4.2E-06 43.8 1.9 71 7-77 382-454 (1057)
5 4dx5_A Acriflavine resistance 86.3 0.41 1.4E-05 40.7 2.8 71 8-78 916-988 (1057)
6 2v50_A Multidrug resistance pr 84.5 0.49 1.7E-05 40.3 2.5 75 9-83 916-991 (1052)
7 3ne5_A Cation efflux system pr 84.1 0.18 6.3E-06 42.8 -0.2 70 7-76 387-468 (1054)
8 3ne5_A Cation efflux system pr 81.9 0.47 1.6E-05 40.3 1.4 71 8-78 922-1004(1054)
9 3omy_A Protein TRAM; DNA bindi 40.1 18 0.00063 21.1 2.1 26 50-75 20-45 (52)
10 2wh6_B BCL-2-like protein 11; 36.9 17 0.00057 18.4 1.4 17 48-64 2-18 (26)
11 1pq1_B BCL2-like protein 11; B 34.1 29 0.00098 18.4 2.1 19 48-66 2-20 (33)
12 3kj0_B BCL-2-like protein 11; 22.2 60 0.0021 16.4 1.9 20 47-66 3-22 (27)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=97.03 E-value=0.00041 Score=57.78 Aligned_cols=84 Identities=10% Similarity=-0.037 Sum_probs=71.1
Q ss_pred hhhhhhcccchhhhhhccceeeEeeecchhhhHhhhhhcc-CCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q psy16375 5 TQFRKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISI-PSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLLTF 83 (89)
Q Consensus 5 ~~~~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t-~~~~~v~~RIa~~ls~~G~SIt~t~ltei~~f~iG~~t~ 83 (89)
-++++++|...++..-.-+.+.+++++||-+++...+++. ....+.++++.+++++.+.+|+.+.+|-+..|..-++..
T Consensus 313 ~~~l~l~g~~l~l~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~ 392 (741)
T 3aqp_A 313 LGLLSGLGATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYA 392 (741)
T ss_dssp HHHHHHHCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667888999888777788999999999999999877643 345678999999999999999999999999998888877
Q ss_pred CCccc
Q psy16375 84 FPVIQ 88 (89)
Q Consensus 84 ~Pavq 88 (89)
.|.+|
T Consensus 393 ~~~~~ 397 (741)
T 3aqp_A 393 TGPVR 397 (741)
T ss_dssp CTHHH
T ss_pred ccccc
Confidence 66543
No 2
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=92.55 E-value=0.021 Score=48.58 Aligned_cols=77 Identities=6% Similarity=0.015 Sum_probs=60.8
Q ss_pred hhhhhcccchhhhhhccceeeEeeecchhhhHhhhhhcc--CCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhc
Q psy16375 6 QFRKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISI--PSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLLT 82 (89)
Q Consensus 6 ~~~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t--~~~~~v~~RIa~~ls~~G~SIt~t~ltei~~f~iG~~t 82 (89)
++..++|...+.++-+-..+.+++++||-+++...+.+. ....+.++++.++.++.+.+|+.+.+|-++.|.-=++.
T Consensus 381 ~~l~~~g~~ln~~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~ 459 (1052)
T 2v50_A 381 GVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 (1052)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667877777776777788889999999999887543 34567899999999999999999999998887544433
No 3
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=92.21 E-value=0.047 Score=45.43 Aligned_cols=80 Identities=13% Similarity=-0.008 Sum_probs=58.0
Q ss_pred hhhhhcccchhhhhhccceeeEeeecchhhhHhhhhhcc---CCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhc
Q psy16375 6 QFRKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISI---PSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLLT 82 (89)
Q Consensus 6 ~~~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t---~~~~~v~~RIa~~ls~~G~SIt~t~ltei~~f~iG~~t 82 (89)
+++.++|...+..+-+-..+++++++||-.++.+-.++. ....+.++.+.+++++.+..++.|+++-++.|..=++.
T Consensus 610 g~l~l~g~~l~~~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~ 689 (741)
T 3aqp_A 610 GMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFL 689 (741)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777876666332223345899999999988876542 23468999999999999999999999988877554444
Q ss_pred cCC
Q psy16375 83 FFP 85 (89)
Q Consensus 83 ~~P 85 (89)
..+
T Consensus 690 g~~ 692 (741)
T 3aqp_A 690 GGS 692 (741)
T ss_dssp CCH
T ss_pred ccH
Confidence 433
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=89.91 E-value=0.12 Score=43.83 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=56.9
Q ss_pred hhhhcccchhhhhhccceeeEeeecchhhhHhhhhhcc-C-CCCCHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16375 7 FRKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISI-P-SHLDSKIRIAQGLSKEGWSITKNFFLELTVLT 77 (89)
Q Consensus 7 ~~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t-~-~~~~v~~RIa~~ls~~G~SIt~t~ltei~~f~ 77 (89)
++.++|...++++-.-.-+.+++++||-+++.....+. . ...+.++.+.++.++.+.+|+.+.+|-++.|.
T Consensus 382 ~l~~~g~~ln~~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~ 454 (1057)
T 4dx5_A 382 VLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFV 454 (1057)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCcHHHHHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777666666778888899999998876643 2 26789999999999999999999999888774
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=86.27 E-value=0.41 Score=40.67 Aligned_cols=71 Identities=7% Similarity=-0.114 Sum_probs=54.5
Q ss_pred hhhcccchhhhhhccceeeEeeecchhhhHhhhhhc--cCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16375 8 RKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIIS--IPSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTA 78 (89)
Q Consensus 8 ~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~--t~~~~~v~~RIa~~ls~~G~SIt~t~ltei~~f~i 78 (89)
+.++|...++.+-+-.-+++++|+||-+++..-.++ .....+.++.+.++..+.+..|+.|.+|-++.|.-
T Consensus 916 l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~p 988 (1057)
T 4dx5_A 916 ATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMP 988 (1057)
T ss_dssp HHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 345666666644444446679999999998877654 34578899999999999999999999998887643
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=84.45 E-value=0.49 Score=40.30 Aligned_cols=75 Identities=7% Similarity=-0.081 Sum_probs=55.0
Q ss_pred hhcccchhhhhhccceeeEeeecchhhhHhhhhhcc-CCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q psy16375 9 KPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISI-PSHLDSKIRIAQGLSKEGWSITKNFFLELTVLTAGLLTF 83 (89)
Q Consensus 9 s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t-~~~~~v~~RIa~~ls~~G~SIt~t~ltei~~f~iG~~t~ 83 (89)
.++|...++.+-+.-.+.+++|+||-+++.+-..+. ....+.++.+.++.++.+..|+.|.+|-++.|.-=++..
T Consensus 916 ~~~g~~l~~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~ 991 (1052)
T 2v50_A 916 SMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAIST 991 (1052)
T ss_dssp HHTTCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCC
T ss_pred HHHCCCccHHHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 445655554333334456799999999998877653 345789999999999999999999999887765444443
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=84.14 E-value=0.18 Score=42.78 Aligned_cols=70 Identities=6% Similarity=-0.034 Sum_probs=53.7
Q ss_pred hhhhcccchhhhhhccceeeEeeecchhhhHhhhhhccC-C-----------CCCHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16375 7 FRKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISIP-S-----------HLDSKIRIAQGLSKEGWSITKNFFLELT 74 (89)
Q Consensus 7 ~~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t~-~-----------~~~v~~RIa~~ls~~G~SIt~t~ltei~ 74 (89)
++.++|...+..+-.-.-+.+++++||-+++.....+.- . ..+.++.+.++.++.++.++.+.+|-++
T Consensus 387 ~l~~~g~~ln~~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s~ltt~~ 466 (1054)
T 3ne5_A 387 VMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITL 466 (1054)
T ss_dssp HHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777776656566778888999999988765422 2 4568899999999999999999998876
Q ss_pred HH
Q psy16375 75 VL 76 (89)
Q Consensus 75 ~f 76 (89)
.|
T Consensus 467 ~f 468 (1054)
T 3ne5_A 467 SF 468 (1054)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=81.89 E-value=0.47 Score=40.30 Aligned_cols=71 Identities=8% Similarity=-0.188 Sum_probs=51.3
Q ss_pred hhhcccchhhhhhccceeeEeeecchhhhHhhhhhccCC------------CCCHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16375 8 RKPNGVLPYFIIIVLPYFIIIVGLENILVLTKSIISIPS------------HLDSKIRIAQGLSKEGWSITKNFFLELTV 75 (89)
Q Consensus 8 ~s~~gv~~tli~eViPFLVl~IGvDniflit~av~~t~~------------~~~v~~RIa~~ls~~G~SIt~t~ltei~~ 75 (89)
+.++|...++.+-+-..+++++++||-+++..-..+... ..+.++.+.++..+.+..|+.|.+|-++.
T Consensus 922 l~l~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltti~g 1001 (1054)
T 3ne5_A 922 LWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAG 1001 (1054)
T ss_dssp HHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 345666666644444456779999999998843332211 45678999999999999999999998887
Q ss_pred HHH
Q psy16375 76 LTA 78 (89)
Q Consensus 76 f~i 78 (89)
|.-
T Consensus 1002 ~~p 1004 (1054)
T 3ne5_A 1002 LLP 1004 (1054)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 9
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=40.12 E-value=18 Score=21.09 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16375 50 SKIRIAQGLSKEGWSITKNFFLELTV 75 (89)
Q Consensus 50 v~~RIa~~ls~~G~SIt~t~ltei~~ 75 (89)
+++|.++|-+++..|-+-+.+.|...
T Consensus 20 Ve~r~qeGA~dvs~Ssv~smLleLGL 45 (52)
T 3omy_A 20 VTIRKQEGIEEASLSNVSSMLLELGL 45 (52)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhh
Confidence 67899999899999999999888754
No 10
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=36.88 E-value=17 Score=18.40 Aligned_cols=17 Identities=35% Similarity=0.398 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHhhhchH
Q psy16375 48 LDSKIRIAQGLSKEGWS 64 (89)
Q Consensus 48 ~~v~~RIa~~ls~~G~S 64 (89)
++.|-+||+-|.++|=.
T Consensus 2 m~PE~~iAqELRRIGDe 18 (26)
T 2wh6_B 2 MRPEIWIAQELRRIGDE 18 (26)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHH
Confidence 56688999999998854
No 11
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=34.09 E-value=29 Score=18.42 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHhhhchHHH
Q psy16375 48 LDSKIRIAQGLSKEGWSIT 66 (89)
Q Consensus 48 ~~v~~RIa~~ls~~G~SIt 66 (89)
++.|.+|||-|.++|=..-
T Consensus 2 mrPEiwIAQELRRIGDeFN 20 (33)
T 1pq1_B 2 LRPEIRIAQELRRIGDEFN 20 (33)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHhh
Confidence 5678899999999986543
No 12
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=22.19 E-value=60 Score=16.38 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHhhhchHHH
Q psy16375 47 HLDSKIRIAQGLSKEGWSIT 66 (89)
Q Consensus 47 ~~~v~~RIa~~ls~~G~SIt 66 (89)
+.+.|-+||+-|.++|-..-
T Consensus 3 ~~~PE~wiAqELRRIGDeFN 22 (27)
T 3kj0_B 3 GGRPEIWYAQELRRIGDEFN 22 (27)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHH
Confidence 45778999999999986543
Done!