BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16377
(1344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + V+C Q ++VP IP T++ L+ N+ K++PN VF ++
Sbjct: 1 CPSRCSC------SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSL 54
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
LY+ ++++ + N FN L+SL L+L N + FD L +L EL L N+++
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+ +G F+ L L+ L+L N+LKS + + L+ ++L +NP+ C+C ++ L WI
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
Query: 924 IDNSNKVKD 932
+S V++
Sbjct: 175 NKHSGVVRN 183
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
LDL NS+ + + F L +L +YL N++ + +FN L L+ L LS N L ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLTD 461
+ F + LKEL L++N + +P + +L LK L L +NQ+ + +G F L L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 462 LRLVDNNIGNLSSGMLY 478
+ L DN G+ Y
Sbjct: 153 IWLHDNPWDCTCPGIRY 169
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 415 LDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
LDL +N++ +P+ + EL L L LG N++ + NG F L LT L L N + +L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 474 SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLW 532
+G+ +L L+ L L+ N++ + G F+K +L +RL N L + +GVF L L +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 533 LNLSEN 538
+ L +N
Sbjct: 153 IWLHDN 158
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
LDL N + + NG F L LT L L N + +L +G+ +L SL LNLS N++ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 498 IGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
G F+K +L + L++N L + +GVF L QL L L +N L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
Q T L L N++ +L +G+ EL SL L L NK+ + G F K L + L +N L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 518 TDI-NGVFTYLAQLLWLNLSENHL 540
+ NGVF L QL L L+ N L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQL 112
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 19/140 (13%)
Query: 61 SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120
S+ F + SL L +S +L LP VF L LK L +NT LQ L G
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-------SLPDG 118
Query: 121 SLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGF---------- 170
D L +L+ L D VF L ++Q + L N D G
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-DCTCPGIRYLSEWINKH 177
Query: 171 -AVRRASAESNSGEKIECSG 189
V R SA S + + +CSG
Sbjct: 178 SGVVRNSAGSVAPDSAKCSG 197
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 61 SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120
S+ F + SL +L + KL LP VF+ L +L L ++T LQ L G
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-------SLPNG 94
Query: 121 SLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDI 165
D L +L+ L D VF L ++ L L +N ++ +
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 63/188 (33%)
Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFD 544
L+L N + + G F++ L + L N L + NGVF L L +LNLS N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL---- 88
Query: 545 YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFI 604
SL N +++ ++ EL++
Sbjct: 89 ------------------QSLPN--------------GVFDKLTQLKELAL--------- 107
Query: 605 NNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQN-----KTLPEFYLG 658
N N ++S+ P FDK + L + +Y N +LK VP +L +L
Sbjct: 108 NTNQLQSL-PDGVFDKLTQLKDLRLYQN----------QLKSVPDGVFDRLTSLQYIWLH 156
Query: 659 GNPFDCDC 666
NP+DC C
Sbjct: 157 DNPWDCTC 164
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 196 LDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXV 253
LDL N L++L G + +T L L+L N++ + F
Sbjct: 33 LDLETNSLKSLPNGVFDELTS---LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQ 289
SLP G+F + E+ N L L G+F KL Q
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXX 252
L L L NKL++L + K L L+L N++ + F
Sbjct: 54 LTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKL 287
SLP+G+F + ++ +N L + G+F +L
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 34/208 (16%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + + C+ + +++VP IP AT + L+ N +++P+ VF
Sbjct: 1 CPSRCSCSGTE------IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF------ 48
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
+ L+ L L L N I FD L KL+ LYL EN+++
Sbjct: 49 ------------------DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+ NG F+ L L+ L LD N+LKS + + L+K++L NP+ CSC + L W+
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150
Query: 924 IDNSNKVKDGLDISCVIDESSPPIRKEI 951
NS K + S S P+R I
Sbjct: 151 NKNSQKEQGSAKCS----GSGKPVRSII 174
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKT-LDLGENQISKIENGSFKNLQQLTDLRLVD 466
+CS E+ +S + +P+ + P T L+L N++ + +G F L QLT L L
Sbjct: 6 SCSG-TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ 61
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFT 525
N I +L G+ +L L +L L +NK+ + G F+K +L + LD+N L + +G+F
Sbjct: 62 NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
Query: 526 YLAQL--LWLN 534
L L +WL+
Sbjct: 122 RLTSLQKIWLH 132
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISK 447
++L L +N L ++ F + L +L LS N I +P + +L L L L EN++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
+ NG F L QL +L L N + ++ G+ L SL+ + L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401
RL+L +N + + F L L + LS+N+I + +F+ L L+ L L N L ++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 402 DSKAFKNCSALKELDLSSNAIVEIPSAL 429
+ F + LKEL L +N + +P +
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGI 119
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
F L L +L L N I + D F L L +YL EN++ + +F+ L L +L L
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSN 420
N L ++ F ++L+++ L +N
Sbjct: 108 DTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSL 255
L+L NKL++L + K +L L L N+I + F SL
Sbjct: 33 LELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKL 287
P G+F + E+ N L + G+F +L
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 221 LHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELS 280
L LE+N++ + F SLP+G+F ++ +Y +N L L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 281 RGLFHKLEQ 289
G+F KL Q
Sbjct: 93 NGVFDKLTQ 101
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 31/138 (22%)
Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGLS-IKNLDASHNRILEISELSIPNSV------- 599
+P + L++ N + SL + + D L+ + L S N+I S+P+ V
Sbjct: 26 IPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQ-----SLPDGVFDKLTKL 78
Query: 600 EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN-----KTLPE 654
+L+++ N ++S+ P+ FDK + +L L +LK VP +L +
Sbjct: 79 TILYLHENKLQSL-PNGVFDK---------LTQLKELALDTNQLKSVPDGIFDRLTSLQK 128
Query: 655 FYLGGNPFDCDCS-MDWL 671
+L NP+DC C +D+L
Sbjct: 129 IWLHTNPWDCSCPRIDYL 146
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
LDL+NN I I+D F +L NLHT+ L N+I I+ F L L +L LS N L +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 403 SKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQI--SKIENGSFKNLQQL 459
K K L+EL + N I ++ S + L + ++LG N + S IENG+F+ +++L
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
+ +R+ D NI + G+ PSL L+L NKI +++ + + LA + L N ++
Sbjct: 174 SYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 520 I-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL---KWLDI---HGNYISSL 565
+ NG L L+L+ N LV VPG L K++ + H N IS++
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNISAI 278
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 37/274 (13%)
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLH---LENNEISQIAPNAFVAX 239
EK+ D +LDL +NK+ + D F+ L+NLH L NN+IS+I+P AF
Sbjct: 44 EKVPKDLPPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 240 XXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXX 299
LPE + + + E+ +N + ++ + +F+ L Q
Sbjct: 100 VKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 300 XXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
I+ F G K L +++ D +I I
Sbjct: 157 LKSSGIENGAFQG---------------------MKKLSYIRIAD---TNITTIPQGLPP 192
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
SL LH L N+I + A GL L+KL LS N + +D+ + N L+EL L++
Sbjct: 193 SLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 420 NAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
N +V++P L++ +++ + L N IS I + F
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
L+ + S + ++P L P LDL N+I++I++G FKNL+ L L L++N I
Sbjct: 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 472 LSSGMLYELPSLEVLNLSKN----------------KIHQIEIGTFEKN-----KRLAAI 510
+S G L LE L LSKN ++H+ EI K+ ++ +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 511 RLDSNFLTDI---NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
L +N L NG F + +L ++ +++ ++ + P +L L + GN I+ + +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKITKV-D 208
Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLAR 625
+K ++ L S N I + S+ N+ + L +NNN + V P D +
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQV 267
Query: 626 VDIYANDITKL 636
V ++ N+I+ +
Sbjct: 268 VYLHNNNISAI 278
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
CP C C + VV CS+ + VP +P D + L N I + F KN
Sbjct: 24 VCPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEK-LSELYLQENRI 861
+ +L + N++I I F L L+ L+L N + + + K L EL + EN I
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEI 133
Query: 862 EYIANGTFNALISLQVLQLDGNRLKS 887
+ FN L + V++L N LKS
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKS 159
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
+ ++ I+T+P +P T ++LDGN + G N+ L ++ + I + N +
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF 869
L+ LHL NN + G D+ + + +YL N I I + F
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDF 283
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 764 SEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNML--SLYVNNSQIEVILNQTF 821
S+ Q+ +P ++P + + N + VF G M+ L N + I N F
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 822 NGLS---------------------SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
G+ SL LHL+ N IT L L++L L N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC 911
I + NG+ L+ L L+ N+L L + ++ VYL NN S
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISA 277
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+L+EL++ ++ ++ VF+GL + + + T L K + G+ G+++L +
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-----KSSGIENGAFQGMKKLSYI 176
Query: 132 XXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDT-----------LGFAVRRASAESN 180
+ SL L+L N I +D LG + SA N
Sbjct: 177 RIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF 236
+ LR L L++NKL + G+ + +Q ++L NN IS I N F
Sbjct: 234 G----SLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
LDL+NN I I+D F +L NLHT+ L N+I I+ F L L +L LS N L +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 403 SKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQI--SKIENGSFKNLQQL 459
K K L+EL + N I ++ S + L + ++LG N + S IENG+F+ +++L
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
+ +R+ D NI + G+ PSL L+L NKI +++ + + LA + L N ++
Sbjct: 174 SYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 520 I-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL---KWLDI---HGNYISSL 565
+ NG L L+L+ N LV VPG L K++ + H N IS++
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNISAI 278
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 37/274 (13%)
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLH---LENNEISQIAPNAFVAX 239
EK+ D +LDL +NK+ + D F+ L+NLH L NN+IS+I+P AF
Sbjct: 44 EKVPKDLPPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 240 XXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXX 299
LPE + + + E+ +N + ++ + +F+ L Q
Sbjct: 100 VKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 300 XXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
I+ F G K L +++ D +I I
Sbjct: 157 LKSSGIENGAFQG---------------------MKKLSYIRIAD---TNITTIPQGLPP 192
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
SL LH L N+I + A GL L+KL LS N + +D+ + N L+EL L++
Sbjct: 193 SLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 420 NAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
N +V++P L++ +++ + L N IS I + F
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
L+ + S + ++P L P LDL N+I++I++G FKNL+ L L L++N I
Sbjct: 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 472 LSSGMLYELPSLEVLNLSKN----------------KIHQIEIGTFEKN-----KRLAAI 510
+S G L LE L LSKN ++H+ EI K+ ++ +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 511 RLDSNFLTDI---NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
L +N L NG F + +L ++ +++ ++ + P +L L + GN I+ + +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKITKV-D 208
Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLAR 625
+K ++ L S N I + S+ N+ + L +NNN + V P D +
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQV 267
Query: 626 VDIYANDITKL 636
V ++ N+I+ +
Sbjct: 268 VYLHNNNISAI 278
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
CP C C + VV CS+ + VP +P D + L N I + F KN
Sbjct: 24 VCPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEK-LSELYLQENRI 861
+ +L + N++I I F L L+ L+L N + + + K L EL + EN I
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEI 133
Query: 862 EYIANGTFNALISLQVLQLDGNRLKS 887
+ FN L + V++L N LKS
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKS 159
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
+ ++ I+T+P +P T ++LDGN + G N+ L ++ + I + N +
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF 869
L+ LHL NN + G D+ + + +YL N I I + F
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDF 283
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 764 SEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNML--SLYVNNSQIEVILNQTF 821
S+ Q+ +P ++P + + N + VF G M+ L N + I N F
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 822 NGLS---------------------SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
G+ SL LHL+ N IT L L++L L N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC 911
I + NG+ L+ L L+ N+L L + ++ VYL NN S
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISA 277
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+L+EL++ ++ ++ VF+GL + + + T L K + G+ G+++L +
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-----KSSGIENGAFQGMKKLSYI 176
Query: 132 XXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDT-----------LGFAVRRASAESN 180
+ SL L+L N I +D LG + SA N
Sbjct: 177 RIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF 236
+ LR L L++NKL + G+ + +Q ++L NN IS I N F
Sbjct: 234 G----SLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 7/185 (3%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + VDC ++ ++VP IP +A +YL N + VF N+
Sbjct: 13 CPSQCSC------SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINL 66
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
LY+ ++Q+ + F+ L+ L VL L N +T FD L L EL++ N++
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+ G L L L LD N+LKS + S L YL NP+ C C + L+ W+
Sbjct: 127 LPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185
Query: 924 IDNSN 928
D+++
Sbjct: 186 ADHTS 190
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
Q L L +N I +E F SL NL +YL N++ + +F+ L L+ L L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
+ S F LKEL + N + E+P + L L L L +NQ+ I +G+F L LT
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 461 DLRLVDN 467
L N
Sbjct: 163 HAYLFGN 169
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 23/162 (14%)
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
+ L L +NQI+K+E G F +L L +L L N +G L G+ L L VL+L N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555
+ F++ L + + N LT++ L L L L +N L +P
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-----KSIP------ 151
Query: 556 DIHGNY--ISSLNNYY--------EIKDGLSIKNLDASHNRI 587
HG + +SSL + Y E +D + ++N A H I
Sbjct: 152 --HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSI 191
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
N +YL +N+I + +F+ L L +L L +N L + F + + L LDL +N +
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 423 VEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
+PSA+ L LK L + N+++++ G + L LT L L N + ++ G L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 482 SL 483
SL
Sbjct: 160 SL 161
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 415 LDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
L L N I ++ P L LK L LG NQ+ + G F +L QLT L L N + L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 474 SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
S + L L+ L + NK+ ++ G E+ L + LD N L I +G F L+ L
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 67/246 (27%)
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVW 542
++L L N+I ++E G F+ L + L SN L + GVF L QL L+L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 543 FDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVE 600
A+ +LK L + N ++ L E R+ ++ L++
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIE---------------RLTHLTHLAL----- 142
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
+ N +KS+ PH FD+ + +L YL GN
Sbjct: 143 ----DQNQLKSI-PHGAFDRLS----------------------------SLTHAYLFGN 169
Query: 661 PFDCDCS-----MDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAP 715
P+DC+C +W + ++TS +M + D D+ C T + +EA+
Sbjct: 170 PWDCECRDIMYLRNW---VADHTSIAMRWDGKAVNDPDSAKCAGTNTPVRA---VTEAST 223
Query: 716 SQYLCP 721
S CP
Sbjct: 224 SPSKCP 229
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 28/211 (13%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806
C+C N VDC + + +VP IP D + L T+ + F G + L
Sbjct: 9 GCTC----NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 807 YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN 866
++ +Q++ + F+ L+ L L L NN + FD+L +L +LYL N+++ + +
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 867 GTFNALISLQVLQLDGNRLKSF--RAFD---------LNTNSM-------------LRKV 902
G F+ L L+ L+L+ N+L+S AFD L+TN + L+ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Query: 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
L N F CS + L WI +NSNKVKDG
Sbjct: 185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDG 215
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
++LDL++ + + D F L L + L N++ ++A +F+ L L L L+NN L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
+ F + + L +L L N + +PS G F L +L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPS-----------------------GVFDRLTKLK 134
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+LRL N + ++ +G +L +L+ L+LS N++ + G F++ +L I L N
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Query: 521 NGVFTYLAQLLWLNLSENHL 540
YL+Q W+ + N +
Sbjct: 195 RCEILYLSQ--WIRENSNKV 212
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ A F DL L L L NN + + F L L +YL N++ + + +F+ L L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQI 445
+L L+ N L +I + AF + L+ L LS+N + +P A L L+T+ L NQ
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 79/230 (34%), Gaps = 66/230 (28%)
Query: 180 NSGEK-IECSGG----------MDLRILDLSHNKLRTLGD--YSGITKFRRLQNLHLENN 226
N G+K ++C G D LDL L TL D + G+TK L L+L+ N
Sbjct: 13 NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK---LTWLNLDYN 69
Query: 227 EISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
++ ++ F SLP G+F + ++Y N L L G+F +
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 287 LEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLR 346
L + L+ L L
Sbjct: 130 LTK--------------------------------------------------LKELRLN 139
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
N + I AF L NL T+ LS N++ + F+ L L +TL N
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+S+ F ++ L++L + +L LP VF L LK L +NT LQ +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIPA 148
Query: 120 GSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRN 160
G+ D L LQ L F L +QT+ L N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806
C+C N VDC + + +VP IP D + L T+ + F G + L
Sbjct: 9 GCTC----NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 807 YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN 866
++ +Q++ + F+ L+ L L L NN + FD+L +L +LYL N+++ + +
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 867 GTFNALISLQVLQLDGNRLKSF--RAFD---------LNTNSM-------------LRKV 902
G F+ L L+ L+L+ N+L+S AFD L+TN + L+ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Query: 903 YLGNNPFSCS-CATLQELQTWIIDNSNKVKDG 933
L N F CS C TL L WI +NSNKVKDG
Sbjct: 185 TLFGNQFDCSRCETLY-LSQWIRENSNKVKDG 215
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
++LDL++ + + D F L L + L N++ ++A +F+ L L L L+NN L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
+ F + + L +L L N + +PS G F L +L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPS-----------------------GVFDRLTKLK 134
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+LRL N + ++ +G +L +L+ L+LS N++ + G F++ +L I L N
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKI 448
KL L + L + F+ + L L+L N + + + + +L L TL L NQ++ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 449 ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLA 508
G F +L QL L L N + +L SG+ L L+ L L+ N++ I G F+K L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 509 AIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
+ L +N L + +G F L +L + L N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ A F DL L L L NN + + F L L +YL N++ + + +F+ L L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQI 445
+L L+ N L +I + AF + L+ L LS+N + +P A L L+T+ L NQ
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 79/230 (34%), Gaps = 66/230 (28%)
Query: 180 NSGEK-IECSGG----------MDLRILDLSHNKLRTLGD--YSGITKFRRLQNLHLENN 226
N G+K ++C G D LDL L TL D + G+TK L L+L+ N
Sbjct: 13 NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK---LTWLNLDYN 69
Query: 227 EISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
++ ++ F SLP G+F + ++Y N L L G+F +
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 287 LEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLR 346
L + L+ L L
Sbjct: 130 LTK--------------------------------------------------LKELRLN 139
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
N + I AF L NL T+ LS N++ + F+ L L +TL N
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+S+ F ++ L++L + +L LP VF L LK L +NT LQ +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIPA 148
Query: 120 GSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRN 160
G+ D L LQ L F L +QT+ L N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L N+I I+ + F L++L + L N I I FNGL L+ L L +N L I
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
S AF+ S L+EL L +N I IPS A + +P L LDLGE ++ I G+F+ L L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
L L NI ++ + L L LE L +S N +I G+F L + + ++ ++ I
Sbjct: 200 YLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 521 -NGVFTYLAQLLWLNLSENHL 540
F LA L+ LNL+ N+L
Sbjct: 258 ERNAFDGLASLVELNLAHNNL 278
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 27/314 (8%)
Query: 374 IHHIT--AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
+HH T A L +Y+ +++ + + S +NC ++ + +V LSE
Sbjct: 9 VHHHTWNAILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSE 68
Query: 432 LPF-----LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
+P + L+L EN I I+ +F++L L L+L N+I + G L SL L
Sbjct: 69 VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSE-NHLVWFD 544
L N + I G FE +L + L +N + I F + L+ L+L E L +
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 545 YAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVE 600
G NLK+L++ I + N + + ++ L+ S N EI S +S++
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLTPL---VGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD---LTALRLKPVPQNKTLPEFYL 657
L++ N+ + ++ + F ++L +++ N+++ L T LR L E +L
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY--------LVELHL 297
Query: 658 GGNPFDCDCSMDWL 671
NP++CDC + WL
Sbjct: 298 HHNPWNCDCDILWL 311
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC N + VV C+ + +S VP IP + ++ L N + I F ++
Sbjct: 46 CPSVCSC---SNQFSKVV-CTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHL 101
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
L + + I I FNGL+SL L L +N +T F+ L KL EL+L+ N IE
Sbjct: 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161
Query: 864 IANGTFNALISLQVLQLDGNRLKSF 888
I + FN + SL ++LD LK
Sbjct: 162 IPSYAFNRVPSL--MRLDLGELKKL 184
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
N+ C+ + + + P + ++ + + GN F I F G ++ L+V NSQ+ +I
Sbjct: 202 NLGMCNIKDMPNLTPLVGLE--ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN 859
F+GL+SL L+L +N ++ F L L EL+L N
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%)
Query: 825 SSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNR 884
S+ + L+L N I F +L L L L N I I G FN L SL L+L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 885 LKSFRAFDLNTNSMLRKVYLGNNPF 909
L + S LR+++L NNP
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPI 159
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 95/279 (34%), Gaps = 73/279 (26%)
Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203
D F L +++ L L RNSIR I+ F +G L L+L N L
Sbjct: 93 DTFRHLHHLEVLQLGRNSIRQIEVGAF-----------------NGLASLNTLELFDNWL 135
Query: 204 RTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFS 261
+ G + ++K R L L NN I I AF
Sbjct: 136 TVIPSGAFEYLSKLRELW---LRNNPIESIPSYAF------------------------- 167
Query: 262 SCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXX 321
+ SL+ L G KLE I E F G
Sbjct: 168 ---------NRVPSLMRLDLGELKKLE---------------YISEGAFEGLFNLKYLNL 203
Query: 322 XXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHL 381
D LV L+ L++ N I +F L +L +++ +++ I +
Sbjct: 204 GMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261
Query: 382 FNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
F+GL L +L L++N L ++ F L EL L N
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
I+ +F+ +++L+ L + C + ++P NL L + L+ + ++ PGS
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMP--------NLTPL-VGLEELEMSGNHFPEIRPGS 237
Query: 122 LDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDI 165
GL L+ L + F LA++ LNL+ N++ +
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQ 879
+F+GLSSL+ L + N+ ++ FD L L EL L N + + + F L L L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Query: 880 LDGN 883
L N
Sbjct: 297 LHHN 300
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 55/248 (22%)
Query: 741 EMTCPKN---CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATH---------------- 781
E C K+ CSC N N N VDCS ++++ +P IP D
Sbjct: 2 EALCKKDGGVCSC----NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF 57
Query: 782 --------VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE 833
+YL+ N +T+P +F KN+ +L+V +++++ + F+ L +L L L+
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 834 NNLITHF---------------YGYE---------FDNLEKLSELYLQENRIEYIANGTF 869
N + GY FD L L EL L N+++ + G F
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 870 NALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
+ L L+ L+LD N+LK ++ L+ + L NP+ C+C + + W+ +++
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADE 237
Query: 930 VKDGLDIS 937
G+D +
Sbjct: 238 GLGGVDTA 245
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 5/195 (2%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
++LDL++N + + AF L L +YL++N++ + A +F L L L +++N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
+ F L EL L N + +P L L L LG N++ + G F L L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN-FLT 518
+LRL +N + + G +L L+ L L N++ ++ G F+ ++L ++L N +
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
Query: 519 DINGVFTYLAQLLWL 533
NG+ Y+A+ WL
Sbjct: 220 TCNGII-YMAK--WL 231
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
+D SS + IPS + K LDL N++S + + +F L +L L L DN + L +
Sbjct: 21 VDCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWL 533
G+ EL +LE L ++ NK+ + IG F++ LA +RLD N L + VF L +L +L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 534 NLSENHL 540
+L N L
Sbjct: 139 SLGYNEL 145
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 79/226 (34%), Gaps = 51/226 (22%)
Query: 219 QNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVE 278
+ L L++N++S + AF +LP G+F +++ ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 279 LSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLV 338
L G+F + LV
Sbjct: 100 LPIGVFDQ--------------------------------------------------LV 109
Query: 339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
L L L N + + F SL L + L N + + +F+ L L +L L NN L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 399 VNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGEN 443
+ AF + LK L L +N + +P A L LK L L EN
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
SS+ +K+F + L L +++ KL LP +F L+NL+ L W KL +P
Sbjct: 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL--------WVTDNKLQALP 101
Query: 120 -GSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
G D L L L VF SL + L+L N ++ + F
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF-------- 153
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF 236
+K+ L+ L L +N+L+ + + K L+ L L+NN++ ++ AF
Sbjct: 154 ----DKL-----TSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAF 201
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNL---HLENNEISQIAPNAFVAXXXXXXXXXX 248
+L L ++ NKL+ L I F +L NL L+ N++ + P F +
Sbjct: 86 NLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 249 XXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQ 289
SLP+G+F + E+ N L + G F KL +
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 5/201 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L N I I+ N+F L +L + LS N I I FNGL L+ L L +N L I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
+ AF S LKEL L +N I IPS A + +P L+ LDLGE ++S I G+F+ L L
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
L L N+ + + L L L+ L+LS N + I G+F+ L + + + + I
Sbjct: 189 YLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Query: 521 -NGVFTYLAQLLWLNLSENHL 540
F L L+ +NL+ N+L
Sbjct: 247 ERNAFDNLQSLVEINLAHNNL 267
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 60/286 (20%)
Query: 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
E+P +S + L+L ENQI I+ SFK+L+ L
Sbjct: 57 EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRH------------------------L 90
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL--LWL-NLSENH 539
E+L LS+N I IEIG F L + L N LT I NG F YL++L LWL N
Sbjct: 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150
Query: 540 LVWFDYAMVPGNLKWLDIHG----NYISSLNNYYEIKDGLS-IKNLDASHNRILEISELS 594
+ + + +P +L+ LD+ +YIS +GLS ++ L+ + + EI L+
Sbjct: 151 IPSYAFNRIP-SLRRLDLGELKRLSYISE-----GAFEGLSNLRYLNLAMCNLREIPNLT 204
Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL------------- 641
++ L ++ N + +++P +F +L ++ + + I ++ A
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 642 -RLKPVPQNKTLP-----EFYLGGNPFDCDCSMDWLPIINNNTSPS 681
L +P + P +L NP++C+C + WL + +PS
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPS 310
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
TCP CSC N + V+ C + + VP I + + L N + I + F ++
Sbjct: 34 TCPSVCSC---SNQFSKVI-CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRH 89
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ L ++ + I I FNGL++L L L +N +T F L KL EL+L+ N IE
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 863 YIANGTFNALISLQVLQL 880
I + FN + SL+ L L
Sbjct: 150 SIPSYAFNRIPSLRRLDL 167
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 61/205 (29%)
Query: 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
N+ C+ ++I + P I +D + L GN I F G ++ L++ SQI+VI
Sbjct: 191 NLAMCNLREIPNLTPLIKLD--ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-- 246
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
E N FDNL+ L E+ L N + + + F L L+
Sbjct: 247 --------------ERN--------AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE-- 282
Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISC 938
+++L +NP++C+C L L WI D + + +C
Sbjct: 283 ----------------------RIHLHHNPWNCNCDILW-LSWWIKDMAPS-----NTAC 314
Query: 939 VIDESSPPIRK-----EIDLNSTTC 958
++PP K E+D N TC
Sbjct: 315 CARCNTPPNLKGRYIGELDQNYFTC 339
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 45/239 (18%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
I SF+++ LE L++S + + + F+GL NL L + +L +P
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL--------FDNRLTTIP-- 128
Query: 122 LDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
+ F L+ ++ L L N I I + F + +
Sbjct: 129 ---------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 182 GEKIECS--------GGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
GE S G +LR L+L+ LR + + +T +L L L N +S I P
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRP 224
Query: 234 NAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF---HKLEQ 289
+F + F + + + EI N+L L LF H LE+
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S I+ +F+ + +L L ++ C L E+P + L L L ++ +L + P
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLS-------AIRP 224
Query: 120 GSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSI 162
GS GL LQ L + F +L ++ +NL+ N++
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L+ NSI I + F L +L + LS+N + I FNGL L+ L L +N L +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
++AF+ S L+EL L +N I IPS A + +P L+ LDLGE ++ I +F+ L L
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL-DSNFLTD 519
L L N+ ++ + L L LE L LS N++ I G+F+ L + L + T
Sbjct: 160 YLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 520 INGVFTYLAQLLWLNLSENHLV 541
F L L LNLS N+L+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLM 239
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I TFK L L+ L L N + IE AF L +L+T+ L +NR+ + F L L
Sbjct: 50 IRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKL 109
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLS--------SNAIVE---------------- 424
+L L NN + +I S AF +L+ LDL S A E
Sbjct: 110 RELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 425 -IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
IP+ L+ L L+ L+L N++ I GSF+ L L L L+ + + +L SL
Sbjct: 170 DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
E LNLS N + + F RL + L+ N
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
+CP CSC N + V+ C+ ++++ VP IP++ ++ L N+ + I F ++
Sbjct: 5 SCPAACSC---SNQASRVI-CTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH 60
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ L ++ + + I FNGL SL L L +N +T F+ L KL EL+L+ N IE
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 863 YIANGTFNALISLQVLQL 880
I + FN + SL+ L L
Sbjct: 121 SIPSYAFNRVPSLRRLDL 138
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 22/269 (8%)
Query: 422 IVEIPSALSELPF-LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
+ E+P+++ P + L+L EN I I +FK+L+ L L+L N + + G L
Sbjct: 26 LAEVPASI---PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSE-N 538
PSL L L N++ + FE +L + L +N + I F + L L+L E
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 539 HLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
L + A G NL++L++ + +L + + + ++ L+ S NR+ I S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLG---MCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 597 N--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL--DLTALRLKPVPQNKTL 652
S+ L++ + + +++ + F D +L +++ N++ L DL P+ + L
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL----FTPLHR---L 252
Query: 653 PEFYLGGNPFDCDCSMDWLPIINNNTSPS 681
+L NP+ C+C + WL T PS
Sbjct: 253 ERVHLNHNPWHCNCDVLWLSWWLKETVPS 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 38/219 (17%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG- 120
I +F + SL L++ + +L +P F L L+ L + ++ S + VP
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 121 ---SLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASA 177
L L+ L+ + + F L N++ LNL +++DI L VR
Sbjct: 134 RRLDLGELKRLEYIS----------EAAFEGLVNLRYLNLGMCNLKDIPNLTALVR---- 179
Query: 178 ESNSGEKIECSGGMDLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNA 235
L L+LS N+L + G + G+T R+L +H +++ I NA
Sbjct: 180 ---------------LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA---QVATIERNA 221
Query: 236 FVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKN 274
F +SLP LF+ + ++ N
Sbjct: 222 FDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 27/135 (20%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
K IPN + R L L N ++++I +F GL+SL+ L L + + FD+L
Sbjct: 168 LKDIPNLTALVRLEELELSGN--RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNP 908
+ L EL L N + + + F L L+ +V+L +NP
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLE------------------------RVHLNHNP 261
Query: 909 FSCSCATLQELQTWI 923
+ C+C L L W+
Sbjct: 262 WHCNCDVLW-LSWWL 275
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 61 SITTKSFQNIYSLEELKISNCKLVE-LPVDVFSGLRNLKRLTINTRNLQWD--------- 110
SI + +F + SL L + K +E + F GL NL+ L + NL+ D
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVR 179
Query: 111 ------KSKKLDLV-PGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIR 163
+LDL+ PGS GL L+ L + F L +++ LNLS N++
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 164 DI 165
+
Sbjct: 240 SL 241
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTIN 103
++I +F ++ SLEEL +S+ L+ LP D+F+ L L+R+ +N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L+ NSI I + F L +L + LS+N + I FNGL L+ L L +N L +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
++AF+ S L+EL L +N I IPS A + +P L+ LDLGE ++ I +F+ L L
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL-DSNFLTD 519
L L N+ ++ + L L LE L LS N++ I G+F+ L + L + T
Sbjct: 160 YLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 520 INGVFTYLAQLLWLNLSENHLV 541
F L L LNLS N+L+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLM 239
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I TFK L L+ L L N + IE AF L +L+T+ L +NR+ + F L L
Sbjct: 50 IRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKL 109
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLS--------SNAIVE---------------- 424
+L L NN + +I S AF +L+ LDL S A E
Sbjct: 110 RELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 425 -IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
IP+ L+ L L+ L+L N++ I GSF+ L L L L+ + + +L SL
Sbjct: 170 DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
E LNLS N + + F RL + L+ N
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
+CP CSC N + V+ C+ ++++ VP IP++ ++ L N+ + I F ++
Sbjct: 5 SCPAACSC---SNQASRVI-CTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH 60
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ L ++ + + I FNGL SL L L +N +T F+ L KL EL+L+ N IE
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 863 YIANGTFNALISLQVLQL 880
I + FN + SL+ L L
Sbjct: 121 SIPSYAFNRVPSLRRLDL 138
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 22/269 (8%)
Query: 422 IVEIPSALSELPF-LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
+ E+P+++ P + L+L EN I I +FK+L+ L L+L N + + G L
Sbjct: 26 LAEVPASI---PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSE-N 538
PSL L L N++ + FE +L + L +N + I F + L L+L E
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 539 HLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
L + A G NL++L++ + +L + + + ++ L+ S NR+ I S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLG---MCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 597 N--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL--DLTALRLKPVPQNKTL 652
S+ L++ + + +++ + F D +L +++ N++ L DL P+ + L
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL----FTPLHR---L 252
Query: 653 PEFYLGGNPFDCDCSMDWLPIINNNTSPS 681
+L NP+ C+C + WL T PS
Sbjct: 253 ERVHLNHNPWHCNCDVLWLSWWLKETVPS 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query: 58 LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
L I +F + SL L++ + +L +P F L L+ L + ++ S +
Sbjct: 70 LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNR 129
Query: 118 VPG----SLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVR 173
VP L L+ L+ + + F L N++ LNL +++DI L VR
Sbjct: 130 VPSLRRLDLGELKRLEYIS----------EAAFEGLVNLRYLNLGMCNLKDIPNLTALVR 179
Query: 174 RASAESNSGEKIECSGGMDLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQI 231
L L+LS N+L + G + G+T R+L +H +++ I
Sbjct: 180 -------------------LEELELSGNRLDLIRPGSFQGLTSLRKLWLMH---AQVATI 217
Query: 232 APNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKN 274
NAF +SLP LF+ + ++ N
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 27/135 (20%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
K IPN + R L L N ++++I +F GL+SL+ L L + + FD+L
Sbjct: 168 LKDIPNLTALVRLEELELSGN--RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNP 908
+ L EL L N + + + F L L+ +V+L +NP
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLE------------------------RVHLNHNP 261
Query: 909 FSCSCATLQELQTWI 923
+ C+C L L W+
Sbjct: 262 WHCNCDVLW-LSWWL 275
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C+C VV CS + + +P IP D T +YLDGN F +P
Sbjct: 4 CPTECTCLD------TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKE-------- 49
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
LS Y L ++ L NN I+ F N+ +L L L NR+
Sbjct: 50 LSNY-----------------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
I TF+ L SL++L L GN + N S L + +G NP C C +Q L W+
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC-NMQWLSDWV 151
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
EL L N +P LS L +DL N+IS + N SF N+ QL L L N + +
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 474 SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
L SL +L+L N I + G F L+ + + +N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L +DL NN I + + +F ++ L T+ LS NR+ I F+GL L L+L N +
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 400 NIDSKAFKNCSALKELDLSSNAI 422
+ AF + SAL L + +N +
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 580 LDASHNRILEISELSIPNSVEVL--FINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
+D S+NRI +S S N ++L ++ N ++ + P TF +L + ++ NDI+ +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 638 LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
A L +G NP CDC+M WL
Sbjct: 119 EGAFN-----DLSALSHLAIGANPLYCDCNMQWL 147
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
+YL N+ + L N + L+ + LSNN + + +++F N + L L LS N + IP
Sbjct: 36 LYLDGNQFTLVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 427 S-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L L+ L L N IS + G+F +L L+ L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 86/153 (56%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T++ L GN +++PN VF N+ L + +Q++ + + F+ L++L L+L +N +
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
FD L L+EL L N+++ + G F+ L L+ L+L N+LKS + + L
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 900 RKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD 932
+ ++L +NP+ C+C ++ L WI +S V++
Sbjct: 208 QYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 240
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
++ L L N + +I SAL EL L L L NQ+ + NG F L L +L LV+N + +
Sbjct: 65 VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
L G+ +L +L LNL+ N++ + G F+K L + L N L + GVF L QL
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 531 LWLNLSENHL 540
L L +N L
Sbjct: 184 KDLRLYQNQL 193
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 402 DSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLT 460
D A K + L L L+ N + +P+ + +L LK L L ENQ+ + +G F L LT
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
L L N + +L G+ +L +L L+LS N++ + G F+K +L +RL N L +
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 521 -NGVFTYLAQLLWLNLSEN 538
+GVF L L ++ L +N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D K+L L L L N + + + F L NL + L EN++ + +F+ L L+
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKI 448
L L++N L ++ F + L ELDLS N + +P + +L LK L L +NQ+ +
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 449 ENGSFKNLQQLTDLRLVDN 467
+G F L L + L DN
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWL 533
G+ Y LP++ L L NK+H +I ++ L + L N L + NGVF L L L
Sbjct: 58 GIQY-LPNVRYLALGGNKLH--DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 534 NLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLS-IKNLDASHNRILEI 590
L EN L + NL +L++ N + SL + D L+ + LD S+N++ +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSL 172
Query: 591 SELSIPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQN 649
P FDK + L + +Y N +LK VP
Sbjct: 173 -----------------------PEGVFDKLTQLKDLRLYQN----------QLKSVPDG 199
Query: 650 -----KTLPEFYLGGNPFDCDC 666
+L +L NP+DC C
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTC 221
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Query: 149 LANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM-----DLRILDLSHNKL 203
L N++ L L N + DI L + G+ +L+ L L N+L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSC 263
++L D K L L+L +N++ + F SLPEG+F
Sbjct: 122 QSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 264 RDISEIYAQKNSLVELSRGLFHKL 287
+ ++ +N L + G+F +L
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRL 204
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
+ + + +L L ++ +L LP VF L NLK L + LQ L G D L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------SLPDGVFDKL 132
Query: 126 RELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDI 165
L L VF L N+ L+LS N ++ +
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
+ CP C+C + N+VDC + ++ +P +P T + L+ NT K IP F K
Sbjct: 3 LHCPAACTC------SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYK 56
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
+ + ++N+QI + F GL SL L L N IT F+ L L L L N+I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
+ F L +L +L L N+L++ + ++ ++L NPF C C
Sbjct: 117 NXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 412 LKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
+ E+ L N I IP A S L+ +DL NQIS++ +F+ L+ L L L N I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQ 529
L + L SL++L L+ NKI+ + + F+ L + L N L I G F+ L
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 530 LLWLNLSEN------HLVWF-DY 545
+ ++L++N HL W DY
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADY 176
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
+ + L N+I I AF L I LS N+I + F GL L+ L L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+ F+ +L+ L L++N I + A +L L L L +N++ I G+F L+
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 459 LTDLRLVDN 467
+ + L N
Sbjct: 154 IQTMHLAQN 162
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I F L+R+DL NN I + +AF L +L+++ L N+I + LF GL+ L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA-LSELPFLKTLDLGEN 443
L L+ N + + AF++ L L L N + I S L ++T+ L +N
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 34 GSNLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDV 90
G L+ +PT+L IT++ ++ + + I +F L + +SN ++ EL D
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 91 FSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL-DGLRELQVLXXXXXXXXXXXDDVFCSL 149
F GLR+L L + K+ +P SL +GL LQ+L D F L
Sbjct: 76 FQGLRSLNSLVL--------YGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDL 127
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRA 175
N+ L+L N ++ I F+ RA
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRA 153
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 552 LKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEI--SELSIPNSVEVLFINNNL 608
L+ +D+ N IS L + GL S+ +L N+I E+ S S+++L +N N
Sbjct: 58 LRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 609 IKSVKPHTFFDKSNLARVDIYAND---ITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
I ++ F D NL + +Y N I K + LR + +L NPF CD
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR--------AIQTMHLAQNPFICD 167
Query: 666 CSMDWL 671
C + WL
Sbjct: 168 CHLKWL 173
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 196 LDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXV 253
+ L N ++ + G +S K RR+ L NN+IS++AP+AF
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRID---LSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 254 SLPEGLF 260
LP+ LF
Sbjct: 94 ELPKSLF 100
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
VF+ +N++ L ++++ V N FNGLSSL+VL + N+ +F F L L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
L + ++E ++ FN+L SLQVL + N+LKS + + L+K++L NP+ CSC
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Query: 915 TLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
+ L W+ NS K + S S P+R I
Sbjct: 536 RIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 568
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L KL L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 400 NIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
++++ + LKEL+++ N I ++P S L L+ LDL N+I I + L
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 458 QL 459
Q+
Sbjct: 174 QM 175
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + F+ L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 151 LEHLDLSSNKI 161
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 51/188 (27%)
Query: 331 AKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
+ F L L+ LD +++++ + E + FLSL NL IYL + H A FNG+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISHTHTRVA--FNGI---- 440
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE--IPSALSELPFLKTLDLGENQISK 447
F S+L+ L ++ N+ E +P +EL L LDL + Q+ +
Sbjct: 441 ----------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
+ +F +L SL+VLN++ N++ + G F++ L
Sbjct: 485 LSPTAFNSLS------------------------SLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 508 AAIRLDSN 515
I L +N
Sbjct: 521 QKIWLHTN 528
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 578 KNLDASHNRILEI 590
++LD S N+I I
Sbjct: 152 EHLDLSSNKIQSI 164
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 100/248 (40%), Gaps = 63/248 (25%)
Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH------QIEIGTFEKNKRLAA 509
L+ L L N GN S + +LPSLE L+LS+N + Q + GT +
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGT------TSL 375
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
LD +F NGV T + L L L+ LD S+L
Sbjct: 376 KYLDLSF----NGVITMSSNFLGLE----------------QLEHLDFQH---SNLKQMS 412
Query: 570 EIKDGLSIKNL-----DASHNRILEISELSIPNSVEVL-FINNNLIKSVKPHTFFDKSNL 623
E LS++NL +H R+ + +S+EVL N+ ++ P F + NL
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 624 ARVDIYANDITKLDLTAL--------------RLKPVPQN-----KTLPEFYLGGNPFDC 664
+D+ + +L TA +LK VP +L + +L NP+DC
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532
Query: 665 DC-SMDWL 671
C +D+L
Sbjct: 533 SCPRIDYL 540
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIEYI 864
N L +L+ L++ +NLI F E F NL L L L N+I+ I
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
F IP+++ KN L L N + + + +F LQVL L I + +L
Sbjct: 19 FYKIPDNLPFSTKN-LDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
LS L L N I+ +A G F+ L SLQ L L S F + L+++ + +N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 790 KTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQ-VLHLENNLITHFYGYEFDNL 848
+TI + + ++ +L + + I+ + F+GLSSLQ ++ +E NL + + +L
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHL 123
Query: 849 EKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKSFRAFDL 893
+ L EL + N I+ + F+ L +L+ L L N+++S DL
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 41/242 (16%)
Query: 64 TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
K F + + L++ NCK + P L++LKRLT T N + ++D L
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTF-TSNKGGNAFSEVD-----LP 347
Query: 124 GLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS----AES 179
L L + F + +++ L+LS N + + + + + S
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 180 NSGEKIECSGGMDLR---ILDLSHNKLRTL--GDYSGI---------------------- 212
N + E S + LR LD+SH R G ++G+
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 213 TKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQ 272
T+ R L L L ++ Q++P AF + S+P+G+F + +I+
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 273 KN 274
N
Sbjct: 527 TN 528
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 146 SNLTNLEHLDLSSNKIQSI 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
+ CP C+C + N+VDC + ++ +P +P T + L+ NT K IP F K
Sbjct: 3 LHCPAACTC------SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYK 56
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
+ + ++N+QI + F GL SL L L N IT F+ L L L L N+I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
+ F L +L +L L N+L++ + ++ ++L NPF C C
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 385 LYVLSKLTLSNNLLVNIDSKAFKNC-----SALKELDLSSNAIVEIP-SALSELPFLKTL 438
L+ + T SNN+ V+ K + E+ L N I IP A S L+ +
Sbjct: 3 LHCPAACTCSNNI-VDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRI 61
Query: 439 DLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498
DL NQIS++ +F+ L+ L L L N I L + L SL++L L+ NKI+ + +
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121
Query: 499 GTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN------HLVWF-DY 545
F+ L + L N L I G F+ L + ++L++N HL W DY
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADY 176
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
+ + L N+I I AF L I LS N+I + F GL L+ L L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+ F+ +L+ L L++N I + A +L L L L +N++ I G+F L+
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 459 LTDLRLVDN 467
+ + L N
Sbjct: 154 IQTMHLAQN 162
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I F L+R+DL NN I + +AF L +L+++ L N+I + LF GL+ L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA-LSELPFLKTLDLGEN 443
L L+ N + + AF++ L L L N + I S L ++T+ L +N
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 552 LKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEI--SELSIPNSVEVLFINNNL 608
L+ +D+ N IS L + GL S+ +L N+I E+ S S+++L +N N
Sbjct: 58 LRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 609 IKSVKPHTFFDKSNLARVDIYAND---ITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
I ++ F D NL + +Y N I K + LR + +L NPF CD
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR--------AIQTMHLAQNPFICD 167
Query: 666 CSMDWL 671
C + WL
Sbjct: 168 CHLKWL 173
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 34 GSNLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDV 90
G L+ +PT+L IT++ ++ + + I +F L + +SN ++ EL D
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 91 FSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL-DGLRELQVLXXXXXXXXXXXDDVFCSL 149
F GLR+L L + K+ +P SL +GL LQ+L D F L
Sbjct: 76 FQGLRSLNSLVL--------YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRA 175
N+ L+L N ++ I F+ RA
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRA 153
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 196 LDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXV 253
+ L N ++ + G +S K RR+ L NN+IS++AP+AF
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRID---LSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 254 SLPEGLF 260
LP+ LF
Sbjct: 94 ELPKSLF 100
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T++ L GN +++PN VF N+ L + +Q++ + + F+ L++L L+L +N +
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
FD L L+ L L N+++ + G F+ L L+ L L+ N+LKS + + L
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Query: 900 RKVYLGNNPFSCSCATLQELQTWI 923
++L NNP+ C+C+ + L WI
Sbjct: 208 THIWLLNNPWDCACSDILYLSRWI 231
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
++ L L N + +I SAL EL L L L NQ+ + NG F L L +L LV+N + +
Sbjct: 65 VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
L G+ +L +L L L N++ + G F+K L + LD+N L + GVF L QL
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 531 LWLNLSENHL 540
L+L++N L
Sbjct: 184 KQLSLNDNQL 193
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D K+L L L L N + + + F L NL + L EN++ + +F+ L L+
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKI 448
L L +N L ++ F + L LDL +N + +P + +L LK L L +NQ+ +
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 449 ENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
+G F L LT + L++N S +LY
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWDCACSDILY 226
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
A L NL + L+ N++ + +F+ L L +L L N L ++ F + L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 417 LSSNAIVEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSG 475
L N + +P + +L L LDL NQ+ + G F L QL L L DN + ++ G
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 476 MLYELPSL 483
+ L SL
Sbjct: 200 VFDRLTSL 207
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 72/205 (35%), Gaps = 53/205 (25%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXX 251
++R L L NKL D S + + L L L N++ + F
Sbjct: 64 NVRYLALGGNKLH---DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 252 XVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFI 311
SLP+G+F +++ +Y N L L +G+F KL
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN---------------------- 158
Query: 312 GXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
L RLDL NN + + + F L L + L++
Sbjct: 159 ----------------------------LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNN 396
N++ + +F+ L L+ + L NN
Sbjct: 191 NQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWL 533
G+ Y LP++ L L NK+H +I ++ L + L N L + NGVF L L L
Sbjct: 58 GIQY-LPNVRYLALGGNKLH--DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 534 NLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLS-IKNLDASHNRILEI 590
L EN L + NL +L ++ N + SL + D L+ + LD +N++ +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK--GVFDKLTNLTRLDLDNNQLQSL 172
Query: 591 SELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQ 648
E ++ L +N+N +KSV P FD+ LT+L
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKSV-PDGVFDR-----------------LTSLT------ 208
Query: 649 NKTLPEFYLGGNPFDCDCS 667
+L NP+DC CS
Sbjct: 209 -----HIWLLNNPWDCACS 222
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 6/144 (4%)
Query: 149 LANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM-----DLRILDLSHNKL 203
L N++ L L N + DI L + G+ +L+ L L N+L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSC 263
++L D K L L+L +N++ + F SLPEG+F
Sbjct: 122 QSLPD-GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 264 RDISEIYAQKNSLVELSRGLFHKL 287
+ ++ N L + G+F +L
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRL 204
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 44/253 (17%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP-----MDATH--------------- 781
++CP NC C +N++ CS+QQ+ VP +P +D +H
Sbjct: 10 VSCPANCLC------ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRL 63
Query: 782 -----VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836
+ L N I + F+ N+ L ++++ + + F+ L +L+VL L NN
Sbjct: 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 837 ITHFYGYEFDNLEKLSELYLQENRI-----EYIANGTFNALISLQVLQLDGNRLKSFRAF 891
I F+++ +L +LYL +N+I E I +G N L L +L L N+LK
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG--NKLPKLMLLDLSSNKLKKLPLT 181
Query: 892 DLNTNSMLRK--VYLGNNPFSCSCATLQELQTWIIDNSNKVKD-GLDISCVIDESSPPIR 948
DL K +YL NNP C C Q W + V D D+ C+ S +
Sbjct: 182 DLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM---HSKKLH 238
Query: 949 KEIDLNSTTCTEY 961
L+ C+EY
Sbjct: 239 NIFSLDFFNCSEY 251
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 337 LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
L L L L +N + +I AF+ + NL + LS N +H + LF+ L L L L NN
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 397 LLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL----SELPFLKTLDLGENQISKI 448
+V +D AF++ + L++L LS N I P L ++LP L LDL N++ K+
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQIS 446
L L LS+N L I S+AF L+ LDLSSN + + L S+L L+ L L N I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE---LPSLEVLNLSKNKIHQIEIGTFEK 503
++ +F+++ QL L L N I ++ + LP L +L+LS NK+ ++ + +K
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 525 TYLAQLLWLNLSENHLVWFDY-AMVP-GNLKWLDIHGNYISSLNNY-YEIKDGLSIKNLD 581
T L L L LS NHL + A VP NL++LD+ N++ +L+ + + L + L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 582 ASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV---DIYANDITKLDL 638
+H +++ + ++ L+++ N I D + L ++ D+ +N + KL L
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 639 TALRLKPVPQNKTLPEFYLGGNPFDCDCSM 668
T L+ P L YL NP +CDC +
Sbjct: 181 TDLQKLPAWVKNGL---YLHNNPLECDCKL 207
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+D F DL L+ L L NN I ++ NAF + L +YLS+N+I L L
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELP 433
KL L LDLSSN + ++P + L +LP
Sbjct: 163 PKLML---------------------LDLSSNKLKKLPLTDLQKLP 187
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 412 LKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
L L LS N + I S A +P L+ LDL N + ++ F +LQ L L L +N+I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
+ ++ L+ L LS+N+I + + + +L + L
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 415 LDLSSNAIVEIPSALS--ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
LDLS N + + + + L L +L L N ++ I + +F + L L L N++ L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN----FLTDINGVFTYLA 528
+ +L +LEVL L N I ++ FE +L + L N F ++ L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 529 QLLWLNLSENHL 540
+L+ L+LS N L
Sbjct: 164 KLMLLDLSSNKL 175
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 195 ILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVS 254
+LDLSHN L L T+ L +L L +N ++ I+ AFV +
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 255 LPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQ 289
L E LFS + + + N +V + R F + Q
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 144/336 (42%), Gaps = 38/336 (11%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
LDL N I + + F S +L + L+EN + + FN L+ L L L +N L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLTD 461
F S L +LD+S N IV + + +L LK+L++G+N + I + +F L L
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
L L N+ ++ + L L L VL L I+ I +F++ RL + +
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI--------- 207
Query: 522 GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN----NYYEIKDGLSI 577
+H + D M P L L++ I+ N Y ++ + +
Sbjct: 208 ----------------SHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250
Query: 578 KNLDASHNRI--LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
+ L+ S+N I +E S L ++ + + + V+P+ F + L +++ N +T
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 636 LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
L+ + L L NP CDC + W+
Sbjct: 311 LEESVFH-----SVGNLETLILDSNPLACDCRLLWV 341
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 119/263 (45%), Gaps = 28/263 (10%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
++ F +L L+ L LR+N + I F L NL + +SEN+I + ++F LY L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISK 447
L + +N LV I +AF ++L++L L + IP+ ALS L L L L I+
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 448 IENGSFKNLQQLTDLRL-----VDNNIGNLSSGM-----------LYELPSLEV------ 485
I + SFK L +L L + +D N G+ L +P L V
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250
Query: 486 --LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSENHLVW 542
LNLS N I IE + RL I+L L + F L L LN+S N L
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 543 FDYAMV--PGNLKWLDIHGNYIS 563
+ ++ GNL+ L + N ++
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 127/302 (42%), Gaps = 6/302 (1%)
Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXV 253
R+LDL N+++TL + F L+ L L N +S + P AF
Sbjct: 35 RLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGX 313
+P G+F+ +++++ +N +V L +F L I F G
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN--LKSLEVGDNDLVYISHRAFSGL 151
Query: 314 XXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE-N 372
T I + L L L LR+ +I I D +F LY L + +S
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSE 431
+ +T + GL L+ L++++ L + A ++ L+ L+LS N I I S L E
Sbjct: 212 YLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
L L+ + L Q++ +E +F+ L L L + N + L + + + +LE L L N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 492 KI 493
+
Sbjct: 331 PL 332
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK-- 801
CP C C + V C ++ VP IP + + L N KT+ F
Sbjct: 3 CPPRCEC----SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58
Query: 802 ----------------------NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
N+ +L + ++++++I F GLS+L L + N I
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887
Y F +L L L + +N + YI++ F+ L SL+ L L+ L S
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 23/242 (9%)
Query: 45 ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINT 104
+TKL+I + V+L + FQ++Y+L+ L++ + LV + FSGL +L++LT+
Sbjct: 106 LTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 105 RNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR----- 159
NL ++ +L L L VL D F L ++ L +S
Sbjct: 162 CNLTSIPTE-------ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 160 ----NSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF 215
N + ++ ++ + + + + LR L+LS+N + T+ + S + +
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHEL 271
Query: 216 RRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNS 275
RLQ + L +++ + P AF +L E +F S ++ + N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 276 LV 277
L
Sbjct: 332 LA 333
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%)
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
N+ SL + + + + L L+ L+L N I+ G L +L E+ L ++
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATL 916
+ F L L+VL + GN+L + ++ L + L +NP +C C L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 61 SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP- 119
++ F + LEEL+++ + + F+ L NL+ L + +S +L L+P
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL--------RSNRLKLIPL 97
Query: 120 GSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFA-------- 171
G GL L L D +F L N+++L + N + I F+
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157
Query: 172 -VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNL 221
+ + + S E + G L +L L H + + DYS F+RL L
Sbjct: 158 TLEKCNLTSIPTEALSHLHG--LIVLRLRHLNINAIRDYS----FKRLYRL 202
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI-PNHVFIGR 800
+ CP+ C C VDCS Q+++ +P IP + L+ N F + +F
Sbjct: 3 LACPEKCRC------EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKL 56
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
+ + +N++I I F G S + + L +N + + F LE L L L+ NR
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
I + N +F L S+++L L N++ + +T L + L NPF+C+C L L
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY-LAWLG 175
Query: 921 TWI 923
W+
Sbjct: 176 EWL 178
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
FK L L++++ NN I IE+ AF ++ I L+ NR+ ++ +F GL L L L
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGEN 443
+N + + + +F S+++ L L N I + P A L L TL+L N
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 381 LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE-LPFLKTLD 439
+F L L K+ SNN + +I+ AF+ S + E+ L+SN + + + + L LKTL
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 440 LGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
L N+I+ + N SF L + L L DN I ++ G L SL LNL N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 414 ELDLSSN--AIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
EL L++N ++E +LP L+ ++ N+I+ IE G+F+ + ++ L N + N
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL----DSNFLTDINGVFTYL 527
+ M L SL+ L L N+I + +F L+++RL D+ T G F L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 528 AQLLWLNLSEN------HLVWF 543
L LNL N +L W
Sbjct: 153 HSLSTLNLLANPFNCNCYLAWL 174
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 280 SRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVF 339
+ G+F KL Q I+E F G + K FK L
Sbjct: 49 ATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
L+ L LR+N I + +++F+ L ++ + L +N+I + F+ L+ LS L L N
Sbjct: 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 508 AAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSL 565
A +RL++N T + G+F L QL +N S N + DI
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------DIEEGAFEGA 80
Query: 566 NNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLAR 625
+ EI L+ L+ +++ + E S++ L + +N I V +F S++
Sbjct: 81 SGVNEIL--LTSNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRL 133
Query: 626 VDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
+ +Y N IT + A +L L NPF+C+C + WL
Sbjct: 134 LSLYDNQITTVAPGAFDTL-----HSLSTLNLLANPFNCNCYLAWL 174
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 145 VFCSLANIQTLNLSRNSIRDIDTLGF----AVRRASAESNSGEKIE---CSGGMDLRILD 197
+F L ++ +N S N I DI+ F V SN E ++ G L+ L
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 198 LSHNKLRTLGD--YSGITKFRRLQNLHLENNEISQIAPNAF 236
L N++ +G+ + G++ R L L +N+I+ +AP AF
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLS---LYDNQITTVAPGAF 149
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 3/201 (1%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-LV 399
QR+ L N I Y+ +F S NL ++L N + I A F GL +L +L LS+N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+D F+ L L L + E+ P L L+ L L +N + + + +F++L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
LT L L N I ++ L SL+ L L +N + ++ F RL + L +N L+
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 519 DING-VFTYLAQLLWLNLSEN 538
+ V L L +L L++N
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDN 234
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C C+++ T+ C +Q + VP IP + ++L GN +P F +N+
Sbjct: 1 CPGACVCYNEPKVTTS---CPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNL 57
Query: 804 LSLYV-------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
L++ +N+Q+ V+ TF GL L LHL+ +
Sbjct: 58 TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887
F L L LYLQ+N ++ + + TF L +L L L GNR+ S
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Score = 70.9 bits (172), Expect = 5e-12, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 2/190 (1%)
Query: 255 LPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXX 314
+P F SCR+++ ++ N+L + F L +D TTF G
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGL-TLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 315 XXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374
+ F+ L LQ L L++N++ + DN F L NL ++L NRI
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELP 433
+ H F GL+ L +L L N + + AF++ L L L +N + +P+ L L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 434 FLKTLDLGEN 443
L+ L L +N
Sbjct: 225 SLQYLRLNDN 234
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 8/189 (4%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI- 425
I+L NRI ++ A F L+ L L +N L ID+ AF + L++LDLS NA + +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 426 -PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
P+ L L TL L + ++ G F+ L L L L DNN+ L +L +L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWF 543
L L N+I + F L + L N + ++ F L +L+ L L N+L
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL--- 212
Query: 544 DYAMVPGNL 552
+M+P +
Sbjct: 213 --SMLPAEV 219
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 42/233 (18%)
Query: 443 NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN-KIHQIEIGTF 501
N+IS + SF++ + LT L L N + + + L LE L+LS N ++ ++ TF
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 502 EKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVP-------GNLK 553
L + LD L ++ G+F LA L +L L +N+L +P GNL
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL-----QALPDNTFRDLGNLT 155
Query: 554 WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVK 613
L +HGN I S+ + + + L +S++ L ++ N + V
Sbjct: 156 HLFLHGNRIPSVPEH-------AFRGL----------------HSLDRLLLHQNHVARVH 192
Query: 614 PHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
PH F D L + ++AN+++ L L VP ++L L NP+ CDC
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVL----VPL-RSLQYLRLNDNPWVCDC 240
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
++YL N + +P++ F N+ L+++ ++I + F GL SL L L N +
Sbjct: 132 YLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARV 191
Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
+ + F +L +L LYL N + + L SLQ L+L+ N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINT--------------- 104
S + SFQ+ +L L + + L + F+GL L++L ++
Sbjct: 44 SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGL 103
Query: 105 ---RNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNS 161
L D+ +L PG GL LQ L D+ F L N+ L L N
Sbjct: 104 GHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR 163
Query: 162 IRDIDTLGF 170
I + F
Sbjct: 164 IPSVPEHAF 172
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS 482
V IP+A S+ FL N+IS + SF+ + LT L L N + + + L
Sbjct: 27 VGIPAA-SQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 80
Query: 483 LEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
LE L+LS N ++ ++ TF RL + LD L ++ G+F LA L +L L +N L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 541 VWF--DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS 598
D GNL L +HGN ISS+ + + L +S
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPER-------AFRGL----------------HS 177
Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLG 658
++ L ++ N + V PH F D L + ++AN+++ L A L P+ + L L
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPL---RALQYLRLN 232
Query: 659 GNPFDCDC 666
NP+ CDC
Sbjct: 233 DNPWVCDC 240
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 3/201 (1%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-LV 399
QR+ L N I ++ +F + NL ++L N + I A F GL +L +L LS+N L
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
++D F L L L + E+ P L L+ L L +N + + + +F++L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
LT L L N I ++ L SL+ L L +N++ + F RL + L +N L+
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 519 DI-NGVFTYLAQLLWLNLSEN 538
+ L L +L L++N
Sbjct: 214 ALPTEALAPLRALQYLRLNDN 234
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C C+++ T+ C +Q + VP IP + ++L GN +P F +N+
Sbjct: 1 CPGACVCYNEPKVTTS---CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 57
Query: 804 LSLYV-------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
L++ +N+Q+ + TF+GL L LHL+ +
Sbjct: 58 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAF 891
F L L LYLQ+N ++ + + TF L +L L L GNR+ S RAF
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 2/190 (1%)
Query: 255 LPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXX 314
+P F +CR+++ ++ N L + F L +D TF G
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 315 XXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374
+ F+ L LQ L L++N++ + D+ F L NL ++L NRI
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELP 433
+ F GL+ L +L L N + ++ AF++ L L L +N + +P+ AL+ L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 224
Query: 434 FLKTLDLGEN 443
L+ L L +N
Sbjct: 225 ALQYLRLNDN 234
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 3/177 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI- 425
I+L NRI H+ A F L+ L L +N+L ID+ AF + L++LDLS NA +
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 426 -PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
P+ L L TL L + ++ G F+ L L L L DN + L +L +L
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
L L N+I + F L + L N + ++ F L +L+ L L N+L
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
++YL N + +P+ F N+ L+++ ++I + + F GL SL L L N + H
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
+ + F +L +L LYL N + + L +LQ L+L+ N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 65/175 (37%), Gaps = 16/175 (9%)
Query: 60 SSITTKSFQNIYSLEELKIS-NCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
+ I +F + LE+L +S N +L + F GL L L ++ LQ +L
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-------ELG 120
Query: 119 PGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGF----AVRR 174
PG GL LQ L DD F L N+ L L N I + F ++ R
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 175 ASAESNSGEKIECSGGMD---LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
N + D L L L N L L + R LQ L L +N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS 482
V IP+A S+ FL N+IS + SF+ + LT L L N + + + L
Sbjct: 28 VGIPAA-SQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 483 LEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
LE L+LS N ++ ++ TF RL + LD L ++ G+F LA L +L L +N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 541 VWF--DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS 598
D GNL L +HGN ISS+ + + L +S
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPER-------AFRGL----------------HS 178
Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLG 658
++ L ++ N + V PH F D L + ++AN+++ L A L P+ + L L
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPL---RALQYLRLN 233
Query: 659 GNPFDCDC 666
NP+ CDC
Sbjct: 234 DNPWVCDC 241
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 3/201 (1%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-LV 399
QR+ L N I ++ +F + NL ++L N + I A F GL +L +L LS+N L
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
++D F L L L + E+ P L L+ L L +N + + + +F++L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
LT L L N I ++ L SL+ L L +N++ + F RL + L +N L+
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 519 DI-NGVFTYLAQLLWLNLSEN 538
+ L L +L L++N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C C+++ T+ C +Q + VP IP + ++L GN +P F +N+
Sbjct: 2 CPGACVCYNEPKVTTS---CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58
Query: 804 LSLYV-------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
L++ +N+Q+ + TF+GL L LHL+ +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAF 891
F L L LYLQ+N ++ + + TF L +L L L GNR+ S RAF
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 2/190 (1%)
Query: 255 LPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXX 314
+P F +CR+++ ++ N L + F L +D TF G
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 315 XXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374
+ F+ L LQ L L++N++ + D+ F L NL ++L NRI
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELP 433
+ F GL+ L +L L N + ++ AF++ L L L +N + +P+ AL+ L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 434 FLKTLDLGEN 443
L+ L L +N
Sbjct: 226 ALQYLRLNDN 235
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 3/177 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI- 425
I+L NRI H+ A F L+ L L +N+L ID+ AF + L++LDLS NA +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 426 -PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
P+ L L TL L + ++ G F+ L L L L DN + L +L +L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
L L N+I + F L + L N + ++ F L +L+ L L N+L
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
++YL N + +P+ F N+ L+++ ++I + + F GL SL L L N + H
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
+ + F +L +L LYL N + + L +LQ L+L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 37.7 bits (86), Expect = 0.039, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 65/175 (37%), Gaps = 16/175 (9%)
Query: 60 SSITTKSFQNIYSLEELKIS-NCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
+ I +F + LE+L +S N +L + F GL L L ++ LQ +L
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-------ELG 121
Query: 119 PGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGF----AVRR 174
PG GL LQ L DD F L N+ L L N I + F ++ R
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 175 ASAESNSGEKIECSGGMD---LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
N + D L L L N L L + R LQ L L +N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDN 235
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 203/499 (40%), Gaps = 106/499 (21%)
Query: 479 ELPS-LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF--LTDINGVFTYLAQLLWLNL 535
ELP+ + ++LS N I ++ +F + + L ++++ L N F L+ L+ L L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 536 SENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL 593
N + + G NL+ L L+ NLD + +L +
Sbjct: 87 DYNQFLQLETGAFNGLANLEVLT------------------LTQCNLDGA---VLSGNFF 125
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLAR---VDIYANDITKL-----------DLT 639
S+E+L + +N IK ++P +FF N+ R +D+ N + + T
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 640 ALRLKPVPQNKTLPEFYLG----GNPFDCDCSMDWLPIINNNTSPSMERQYPKIM---DL 692
LRL + + + E++LG GNPF + S+ L + N SM +++ + +
Sbjct: 184 LLRLSSITL-QDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241
Query: 693 DNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFH 752
+++ +Y+ GS+ + P F E + K C
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDN-----------------FTFKGLEASGVKTC---- 280
Query: 753 DQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQ 812
D S+ +I + K++ +H ++ L + ++
Sbjct: 281 ---------DLSKSKIFAL-----------------LKSVFSHF----TDLEQLTLAQNE 310
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL 872
I I + F GL+ L L+L N + F+NL+KL L L N I + + +F L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 873 ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD 932
+L+ L LD N+LKS + + L+K++L NP+ CSC + L W+ NS K +
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 430
Query: 933 GLDISCVIDESSPPIRKEI 951
S S P+R I
Sbjct: 431 ----SAKCSGSGKPVRSII 445
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 330 DAKTFKDL--VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
D TFK L ++ DL + I + + F +L + L++N I+ I + F GL
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQIS 446
L KL LS N L +IDS+ F+N L+ LDLS N I + + LP LK L L NQ+
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 447 KIENGSFKNLQQLTDLRLVDN 467
+ +G F L L + L N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 402 DSKAFKN--CSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
D+ FK S +K DLS + I + S S L+ L L +N+I+KI++ +F L
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
L L L N +G++ S M L LEVL+LS N I + +F L + LD+N L
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 519 DI-NGVFTYLAQL--LWL 533
+ +G+F L L +WL
Sbjct: 385 SVPDGIFDRLTSLQKIWL 402
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 23/152 (15%)
Query: 364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
+ T LS+++I + +F+ L +LTL+ N + ID AF + L +L+LS N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
I S + F+NL +L L L N+I L LP+L
Sbjct: 337 SIDSRM-----------------------FENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ L L N++ + G F++ L I L +N
Sbjct: 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 305 IDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
ID+ F G ID++ F++L L+ LDL N I + D +FL L NL
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
+ L N++ + +F+ L L K+ L N
Sbjct: 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 161/410 (39%), Gaps = 100/410 (24%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIG-YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGL 385
++ +F L LQ L + + G I +N F L +L + L N+ + FNGL
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102
Query: 386 YVLSKLTLSNNLLVNIDSKA-----FKNCSALKELDLSSNAIVEIPSA--LSELPFLKTL 438
L LTL+ N+D FK ++L+ L L N I +I A + L
Sbjct: 103 ANLEVLTLTQ---CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 439 DLGENQISKIENGSFKNLQ-------QLTDLRLVDNN---IGNLSSGMLYELPSLEVLNL 488
DL N++ I N Q +L+ + L D N +G G ++ S+ L+L
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219
Query: 489 SKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD----------------------------- 519
S N + F +A ++ S L++
Sbjct: 220 SGNGFKESMAKRFF--DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 520 -------------INGVFTYLAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISS 564
+ VF++ L L L++N + D G +L L++ N++ S
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 565 LNN-YYEIKDGLSIKNLDASHNRIL-EISELSIPNSVEVLFINNNLIKSVKPHTFFDKSN 622
+++ +E D L + +L +H R L + S L +PN E L ++ N +KSV P FD+
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE-LALDTNQLKSV-PDGIFDR-- 393
Query: 623 LARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
LT+L+ + +L NP+DC C +D+L
Sbjct: 394 ---------------LTSLQ-----------KIWLHTNPWDCSCPRIDYL 417
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 111 KSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGF 170
KSK L+ +L+ L D+ F L ++ LNLS+N + ID+ F
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343
Query: 171 AVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230
E ++ L +LDLS+N +R LGD S L+ L L+ N++
Sbjct: 344 ------------ENLD-----KLEVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKS 385
Query: 231 IAPNAF 236
+ F
Sbjct: 386 VPDGIF 391
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE-VILNQTFNGLSSLQVLH 831
P +P +V L N+ + F +++ L V VI N TF GLSSL +L
Sbjct: 26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85
Query: 832 LENNLITHFYGYEFDNLEKLSELYLQENRIE--YIANGTFNALISLQVLQLDGNRLKSFR 889
L+ N F+ L L L L + ++ ++ F L SL++L L N +K +
Sbjct: 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 28/290 (9%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
++++ F+ L L+ L+L N I I D AF L NL + LS N + + + F GL +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE---IPS---------ALSELPFL- 435
+ + L N + I + FK L+ LDL NA+ IPS L LP +
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 436 ---KTLDLGENQISKIENGSF-KNLQQLTDLRLVDNNIGNLSSGML-YELPSLEVLNLSK 490
+ L EN++ ++ F + L L L N + S E PSLE L L +
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 491 NKIH-----QIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFD 544
N + ++ FE L + L+ N+L + GVF++L L L+L+ N L
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Query: 545 YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
+ +P NL+ LDI N + + N ++ LS+ LD +HN+ + ELS
Sbjct: 521 HNDLPANLEILDISRNQLLAPNP--DVFVSLSV--LDITHNKFICECELS 566
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 45/307 (14%)
Query: 410 SALKELDLSSNAIVEIPSALSE-LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
S+++ LDLS + + S + E L LK L+L N+I+KI + +F L L L L N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN------G 522
+G L S Y LP + ++L KN I I+ TF+ ++L + L N LT I+
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 523 VFTYLAQLLWL----------NLSENHLVWFD---YAMVPGNLKWLDIHGNYISSLNNYY 569
+F +L+ L +LSEN L D + + +L+ L ++ N SS +
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSV-------EVLFINNNLIKSVKPHTFFDKSN 622
+ S++ L N + E + V +VL++N+N + S+ P F +
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 623 LARVDIYANDITKL---DLTA-LRLKPVPQNKTL---PEFYLG-------GNPFDCDCSM 668
L + + +N +T L DL A L + + +N+ L P+ ++ N F C+C +
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565
Query: 669 ----DWL 671
+WL
Sbjct: 566 STFINWL 572
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%)
Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
H+ L ++ + VF K++ L + ++I I ++ F GL +LQVL+L NL+
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887
Y F L K++ + LQ+N I I + TF L LQ L L N L +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN--LSSGMLYELPSLEV 485
A LP L+ LDLG ++I + +F+ L L +LRL + + L G L +L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 486 LNLSKNKIHQIEIG-TFEKNKRLAAIRLDSN 515
L+LSKN+I + + +F K L +I SN
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 161/372 (43%), Gaps = 84/372 (22%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
ID + F++L L+ LDL ++ I ++ +AF L++L + L F G L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL-----------YFCG---L 109
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
S L + F+N AL LDLS N I + + + +L LK++D NQI
Sbjct: 110 SDAVLKDG--------YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE---VLNLSKNKIHQIEIGTFEK 503
+ + LQ T + +L++ LY S++ +N +N + +EI
Sbjct: 162 LVCEHELEPLQGKTL------SFFSLAANSLYSRVSVDWGKCMNPFRNMV--LEILDVSG 213
Query: 504 NKRLAAIRLDSNFLTDINGVFTYL---AQLLWLNLSENHLVWFDY--------------A 546
N + DI G F+ +Q L L+ +H++ +
Sbjct: 214 N----------GWTVDITGNFSNAISKSQAFSLILA-HHIMGAGFGFHNIKDPDQNTFAG 262
Query: 547 MVPGNLKWLDIHGNYISSLNN--YYEIKDGLSIKNLDASHNRILEISELSI--PNSVEVL 602
+ +++ LD+ ++ SLN+ + +KD +K L+ ++N+I +I++ + ++++VL
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKD---LKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 603 FINNNLIKSVKPHTFFDKSNLARVDIYANDIT--------------KLDLTALRLKPVPQ 648
++ NL+ + F+ +A +D+ N I LDL L +
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379
Query: 649 NKTLPEFYLGGN 660
++P+ +L GN
Sbjct: 380 IPSIPDIFLSGN 391
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 94/231 (40%), Gaps = 35/231 (15%)
Query: 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV--NNSQIEVILNQTFNGLSSLQVL 830
P+I + A ++L N + + F+ R L + + N +QT + SL+ L
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 831 HLENNLITHFYGYE-----FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
L N++ + E F+ L L LYL N + + G F+ L +L+ L L+ NRL
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 886 KSFRAFDLNTN----SMLRKVYLGNNP---------------FSCSCATLQELQTWI--I 924
DL N + R L NP F C C EL T+I +
Sbjct: 517 TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC----ELSTFINWL 572
Query: 925 DNSNKVKDG--LDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMV 973
+++N G DI CV +S + L++ C E S+ S+ +
Sbjct: 573 NHTNVTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEEVLKSLKFSLFI 622
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 820 TFNGLSSLQVLHLENNLITHFYGYE-----FDNLEKLSELYLQENRIEYIANGTFNALIS 874
TF GL+ V HL+ ++H + + F+ L+ L L L N+I IA+ F L +
Sbjct: 259 TFAGLARSSVRHLD---LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 875 LQVLQLDGNRL 885
LQVL L N L
Sbjct: 316 LQVLNLSYNLL 326
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT--HFY---------GYEF 845
F G + + + + I +I +QTF L LQ L L +N +T HF G +
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393
Query: 846 DNLEKL----SELYLQENRIEYIANGTFNALIS-LQVLQLDGNRLKSFRAFDL-NTNSML 899
L K+ + ++L ENR+E + F + LQ+L L+ NR S + N L
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453
Query: 900 RKVYLGNN 907
+++LG N
Sbjct: 454 EQLFLGEN 461
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC DQ +V+C ++++VP IP D
Sbjct: 6 CPSQCSC--DQT----LVNCQNIRLASVPAGIPTDK------------------------ 35
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
Q L L NN IT FD+L L +LY N++
Sbjct: 36 ------------------------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
I G F+ L L L L+ N LKS + L +YL NNP+ C C + L+ W+
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131
Query: 924 IDNSNKV 930
D+++ V
Sbjct: 132 ADHTSIV 138
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
QRL L NN I +E F L NL +Y + N++ I +F+ L L++L L++N L +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 401 IDSKAFKNCSALKELDLSSN 420
I AF N +L + L +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKI 448
+L L+NN + ++ F + L++L +SN + IP+ + +L L LDL +N + I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 449 ENGSFKNLQQLTDLRLVDN 467
G+F NL+ LT + L +N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 423 VEIPSALSELPFLKT-LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
+ + S + +P K L L NQI+K+E G F +L L L N + + +G+ +L
Sbjct: 22 IRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L L+L+ N + I G F+ K L I L +N
Sbjct: 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN--------------DITKLDLT 639
IP + L++NNN I ++P F NL ++ +N +T+LDL
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 640 ALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKI 689
LK +P+ K+L YL NP+DC+C +W + ++TS M +
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW---VADHTSIVMRWDGKAV 146
Query: 690 MDLDNVVCKMT 700
D D+ C T
Sbjct: 147 NDPDSAKCAGT 157
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFD 544
L L+ N+I ++E G F+ L + +SN LT I GVF L QL L+L++NHL
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 545 YAMVPGNLKWLDIHGNYISSLNNYY--EIKDGLSIKNLDASHNRIL 588
NLK L +I NN + E +D + ++N A H I+
Sbjct: 98 RGAF-DNLKSL----THIYLYNNPWDCECRDIMYLRNWVADHTSIV 138
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 413 KELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
+ L L++N I ++ P L L+ L N+++ I G F L QLT L L DN++ +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 472 LSSGMLYELPSLEVLNLSKN 491
+ G L SL + L N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI- 520
L L +N I L G+ L +L+ L + NK+ I G F+K +L + L+ N L I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 521 NGVFTYLAQLLWLNLSEN 538
G F L L + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 219 QNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L L NN+I+++ P F ++P G+F ++++ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 279 LSRGLFHKLE 288
+ RG F L+
Sbjct: 96 IPRGAFDNLK 105
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
LDL+NN I + + F L +L+ + L N+I I F+ L L KL +S N LV I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQI--SKIENGSFKNLQQL 459
S+L EL + N I ++P + S L + +++G N + S E G+F L +L
Sbjct: 119 PNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174
Query: 460 TDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
LR+ + + +G+ +LP +L L+L NKI IE+ + +L + L N +
Sbjct: 175 NYLRISEAKL----TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 519 DI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
I NG ++L L L+L N L + VP L L +
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKL-----SRVPAGLPDLKL 265
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C C + VV CS+ + VP I D T + L N + F G +++
Sbjct: 27 CPFGCHC------HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHL 80
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
+L + N++I I + F+ L LQ L++ N H + L EL + +NRI
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKN---HLVEIPPNLPSSLVELRIHDNRIRK 137
Query: 864 IANGTFNALISLQVLQLDGNRLKS 887
+ G F+ L ++ +++ GN L++
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLEN 161
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS---------------------EN 372
FK L L L L NN I I + AF L L +Y+S +N
Sbjct: 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVN--IDSKAFKNCSALKELDLSSNAIVEIPSALS 430
RI + +F+GL ++ + + N L N + AF L L +S + IP L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP 192
Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
E L L L N+I IE +L L L N I + +G L LP+L L+L
Sbjct: 193 ET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250
Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
NK+ ++ G K L + L +N +T +
Sbjct: 251 NKLSRVPAG-LPDLKLLQVVYLHTNNITKVG 280
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 110/256 (42%), Gaps = 38/256 (14%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
L+ + S + +P +S P LDL N IS++ FK LQ L L LV+N I
Sbjct: 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 472 ----------------LSSGMLYELP-----SLEVLNLSKNKIHQIEIGTFEKNKRLAAI 510
+S L E+P SL L + N+I ++ G F + + I
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152
Query: 511 RLDSNFLTDIN---GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
+ N L + G F L +L +L +SE L + P L L + N I ++
Sbjct: 153 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAI-- 208
Query: 568 YYEIKDGL---SIKNLDASHN--RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSN 622
E++D L + L HN R++E LS ++ L ++NN + V P D
Sbjct: 209 --ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKL 265
Query: 623 LARVDIYANDITKLDL 638
L V ++ N+ITK+ +
Sbjct: 266 LQVVYLHTNNITKVGV 281
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 764 SEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE--VILNQTF 821
S+ + +PP +P + + N + +P VF G +NM + + + +E F
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 822 NGLS--------------------SLQVLHLENNLITHFYGYEFDNLEKLSELY---LQE 858
+GL +L LHL++N I E ++L + S+LY L
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ---AIELEDLLRYSKLYRLGLGH 226
Query: 859 NRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
N+I I NG+ + L +L+ L LD N+L A L +L+ VYL N
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTN 274
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 38 SFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNL 97
+F P + KL I + V + ++ + SL EL+I + ++ ++P VFSGLRN+
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNLPS-------SLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 98 KRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNL 157
+ + L+ + PG+ DGL+ L L D+ +L L+L
Sbjct: 150 NCIEMGGNPLENSGFE-----PGAFDGLK-LNYLRISEAKLTGIPKDLPETL---NELHL 200
Query: 158 SRNSIRDI---DTLGFA-VRRASAESNSGEKIECSGGMD----LRILDLSHNKLRTLGDY 209
N I+ I D L ++ + R N IE +G + LR L L +NKL +
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLSRVP-- 257
Query: 210 SGITKFRRLQNLHLENNEISQIAPNAF 236
+G+ + LQ ++L N I+++ N F
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDF 284
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
N + SE +++ +P +P ++LD N + I + + L + ++QI +I N
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF 869
+ + L +L+ LHL+NN ++ +L+ L +YL N I + F
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDF 284
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 97/264 (36%), Gaps = 36/264 (13%)
Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXX 249
D +LDL +N + L D+ G+ + L L L NN+IS+I AF
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGL---QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111
Query: 250 XXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETT 309
V +P L SS + E+ N + ++ +G+F L +
Sbjct: 112 NHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 310 FIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
F G L L + + I + +L LH L
Sbjct: 169 FDGLK-------------------------LNYLRISEAKLTGIPKDLPETLNELH---L 200
Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
N+I I L +L L +N + I++ + L+EL L +N + +P+ L
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 430 SELPFLKTLDLGENQISKIENGSF 453
+L L+ + L N I+K+ F
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDF 284
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 54/182 (29%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
M CP CSC + VDCS + +++VP IP
Sbjct: 1 MACPSQCSC------SGTTVDCSGKSLASVPTGIP------------------------- 29
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
++ QVL+L +N IT FD L +L+ L L N++
Sbjct: 30 -----------------------TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
+ G F+ L L L L+ N+LKS + L ++L NNP+ C+C+ + L
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSR 126
Query: 922 WI 923
WI
Sbjct: 127 WI 128
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+CS +D S ++ +P+ + + L L +N+I+K+E G F L QLT L L +N
Sbjct: 8 SCSG-TTVDCSGKSLASVPTGIPTT--TQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNN 64
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN----FLTDINGV 523
+ L +G+ +L L L+L+ N++ I G F+ + L I L +N +DI +
Sbjct: 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYL 124
Query: 524 FTYLAQLLWL 533
+++Q WL
Sbjct: 125 SRWISQHPWL 134
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+YL +NRI + +F+ L L++L L NN L + + F + L +L L+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN------ 86
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
+NQ+ I G+F NL+ LT + L++N S +LY
Sbjct: 87 -----------------DNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILY 123
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL---------DLTAL--- 641
IP + +VL++ +N I ++P F + L R+D+ N +T L LT L
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 642 --RLKPVPQN-----KTLPEFYLGGNPFDCDCS 667
+LK +P+ ++L +L NP+DC CS
Sbjct: 87 DNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACS 119
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
T+++ F L L RLDL NN + + F L L + L++N++ I F+ L
Sbjct: 43 TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLR 102
Query: 387 VLSKLTLSNN 396
L+ + L NN
Sbjct: 103 SLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 28/70 (40%)
Query: 219 QNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L+L +N I+++ P F LP G+F ++++ N L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 279 LSRGLFHKLE 288
+ RG F L
Sbjct: 93 IPRGAFDNLR 102
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 54/182 (29%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
M CP CSC + VDCS + +++VP IP
Sbjct: 1 MACPSQCSC------SGTTVDCSGKSLASVPTGIP------------------------- 29
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
++ QVL+L +N IT FD L +L+ L L N++
Sbjct: 30 -----------------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
+ G F+ L L L L+ N+LKS + L ++L NNP+ C+C+ + L
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSR 126
Query: 922 WI 923
WI
Sbjct: 127 WI 128
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+CS +D S ++ +P+ + + L L +NQI+K+E G F L QLT L L +N
Sbjct: 8 SCSG-TTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ L +G+ +L L L+L+ N++ I G F+ K L I L +N
Sbjct: 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+YL +N+I + +F+ L L++L L NN L + + F + L +L L+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN------ 86
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
+NQ+ I G+F NL+ LT + L++N S +LY
Sbjct: 87 -----------------DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILY 123
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL---------DLTAL--- 641
IP + +VL++ +N I ++P F + L R+D+ N +T L LT L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 642 --RLKPVPQN-----KTLPEFYLGGNPFDCDCS 667
+LK +P+ K+L +L NP+DC CS
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
T+++ F L L RLDL NN + + F L L + L++N++ I F+ L
Sbjct: 43 TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK 102
Query: 387 VLSKLTLSNN 396
L+ + L NN
Sbjct: 103 SLTHIWLLNN 112
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 437 TLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496
T+D ++ + G Q L L DN I L G+ L L L+L N++ +
Sbjct: 13 TVDCSGKSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 497 EIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL--LWL 533
G F+K +L + L+ N L I G F L L +WL
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 219 QNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L+L +N+I+++ P F LP G+F ++++ N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 279 LSRGLFHKLE 288
+ RG F L+
Sbjct: 93 IPRGAFDNLK 102
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 54/180 (30%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + VDCS + +++VP IP
Sbjct: 11 CPSQCSC------SGTTVDCSGKSLASVPTGIP--------------------------- 37
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
++ QVL+L +N IT FD L +L+ L L N++
Sbjct: 38 ---------------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+ G F+ L L L L+ N+LKS + L ++L NNP+ C+C+ + L WI
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+CS +D S ++ +P+ + + L L +NQI+K+E G F L QLT L L +N
Sbjct: 16 SCSG-TTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 72
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ L +G+ +L L L+L+ N++ I G F+ K L I L +N
Sbjct: 73 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+YL +N+I + +F+ L L++L L NN L + + F + L +L L+
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN------ 94
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
+NQ+ I G+F NL+ LT + L++N S +LY
Sbjct: 95 -----------------DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILY 131
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL---------DLTAL--- 641
IP + +VL++ +N I ++P F + L R+D+ N +T L LT L
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 642 --RLKPVPQN-----KTLPEFYLGGNPFDCDCS 667
+LK +P+ K+L +L NP+DC CS
Sbjct: 95 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 127
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
T+++ F L L RLDL NN + + F L L + L++N++ I F+ L
Sbjct: 51 TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK 110
Query: 387 VLSKLTLSNN 396
L+ + L NN
Sbjct: 111 SLTHIWLLNN 120
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 437 TLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496
T+D ++ + G Q L L DN I L G+ L L L+L N++ +
Sbjct: 21 TVDCSGKSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 497 EIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL--LWL 533
G F+K +L + L+ N L I G F L L +WL
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 219 QNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L+L +N+I+++ P F LP G+F ++++ N L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 279 LSRGLFHKLE 288
+ RG F L+
Sbjct: 101 IPRGAFDNLK 110
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 35/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
+L+ S+N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 155 QLSFSSNQVT--DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 211
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
+ G+ +L LTDL L +N I NL+ L L L L L
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
N+I I L + L+ N L DI+ + + L L +L L N++
Sbjct: 270 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 326
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
L+ L + N +S +++ + + I L A HN+I +++ L+
Sbjct: 327 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 368
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLG--FAVRRASAESNSGEKIECSGGM-DLRILDLSH 200
D +L N+ L LS N+I DI L ++++ S SN ++ + L LD+S
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISS 182
Query: 201 NKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
NK+ D S + K L++L NN+IS I P
Sbjct: 183 NKVS---DISVLAKLTNLESLIATNNQISDITP 212
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D+ +L GL
Sbjct: 103 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-------DI--SALSGLT 151
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 152 SLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 256
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 49/241 (20%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 65 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
I+ + L + L SN ++DI+ + L L L+ S N + +LK
Sbjct: 121 DID--PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFSSNQVT---------DLKP 168
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
L + +++ LD S N++ +IS L+ ++E L NN I + P
Sbjct: 169 L----------------ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 615 HTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYLGG 659
+NL + + N ++T LDL L P+ L E LG
Sbjct: 213 LGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 660 N 660
N
Sbjct: 271 N 271
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
KL L ++++ + LKEL+++ N I ++P S L L+ LDL N+I
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
I TDLR +L+++P L+LS N ++ I+ G F K
Sbjct: 165 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 202
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
RL + LD+N L + +G+F L L +WL+
Sbjct: 203 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 58 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 117
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
N L +L+ L++ +NLI F E F NL L L L N+I+
Sbjct: 118 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
+I G F I L+ L LD N+LKS + + L+K++L N
Sbjct: 178 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
P+ CSC + L W+ NS K + S S P+R I
Sbjct: 237 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 276
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 14/220 (6%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 34 NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 94 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
++LD S N+I I + ++ +N +L S+ P F + + +L
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELA 208
Query: 638 LTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-MDWL 671
L +LK VP +L + +L NP+DC C +D+L
Sbjct: 209 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 248
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + + F+ L
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 153 LEHLDLSSNKI 163
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 764 SEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823
SE + VP + T+ ++ N +K IP+++ KN L ++ + + + + +F
Sbjct: 2 SEPCVEVVP-----NITYQCMELNFYK-IPDNLPFSTKN---LDLSWNPLRHLGSYSFFS 52
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
LQVL L I + +L LS L L N I+ +A G F+ L SLQ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 884 RLKSFRAFDLNTNSMLRKVYLGNN 907
L S F + L+++ + +N
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHN 136
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 28 LPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 88 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 148 SNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
KL L ++++ + LKEL+++ N I ++P S L L+ LDL N+I
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
I TDLR +L+++P L+LS N ++ I+ G F K
Sbjct: 164 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 201
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
RL + LD+N L + +G+F L L +WL+
Sbjct: 202 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 116
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
N L +L+ L++ +NLI F E F NL L L L N+I+
Sbjct: 117 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
+I G F I L+ L LD N+LKS + + L+K++L N
Sbjct: 177 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
P+ CSC + L W+ NS K + S S P+R I
Sbjct: 236 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 275
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 14/220 (6%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 33 NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 92
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
++LD S N+I I + ++ +N +L S+ P F + + +L
Sbjct: 153 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELA 207
Query: 638 LTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-MDWL 671
L +LK VP +L + +L NP+DC C +D+L
Sbjct: 208 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 247
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + + F+ L
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 152 LEHLDLSSNKI 162
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
F IP+++ KN L ++ + + + + +F LQVL L I + +L
Sbjct: 20 FYKIPDNLPFSTKN---LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 76
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
LS L L N I+ +A G F+ L SLQ L L S F + L+++ + +N
Sbjct: 77 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 27 LPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 87 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 147 SNLTNLEHLDLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
KL L ++++ + LKEL+++ N I ++P S L L+ LDL N+I
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
I TDLR +L+++P L+LS N ++ I+ G F K
Sbjct: 164 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 201
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
RL + LD+N L + +G+F L L +WL+
Sbjct: 202 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 116
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
N L +L+ L++ +NLI F E F NL L L L N+I+
Sbjct: 117 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
+I G F I L+ L LD N+LKS + + L+K++L N
Sbjct: 177 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
P+ CSC + L W+ NS K + S S P+R I
Sbjct: 236 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 275
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 14/220 (6%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 33 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 92
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
++LD S N+I I + ++ +N +L S+ P F + + +L
Sbjct: 153 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELA 207
Query: 638 LTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-MDWL 671
L +LK VP +L + +L NP+DC C +D+L
Sbjct: 208 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 247
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + + F+ L
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 152 LEHLDLSSNKI 162
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
F IP+++ KN L L N + + + +F LQVL L I + +L
Sbjct: 20 FYKIPDNLPFSTKN-LDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 76
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
LS L L N I+ +A G F+ L SLQ L L S F + L+++ + +N
Sbjct: 77 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 27 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 87 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 147 SNLTNLEHLDLSSNKIQSI 165
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 54/187 (28%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + V+C E+ +++VP IP
Sbjct: 13 CPSQCSC------SGTTVNCQERSLASVPAGIP--------------------------- 39
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
++ QVLHL N IT FD+L +L+ L L N++
Sbjct: 40 ---------------------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+ G F+ L L L L N+LKS + L +YL NNP+ C C+ + L+ WI
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWI 138
Query: 924 IDNSNKV 930
+ +++ V
Sbjct: 139 VQHASIV 145
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
+ L L NQI+K+E G F +L QLT L L N + L G+ +L L L L N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 496 IEIGTFEKNKRLAAIRLDSN 515
I +G F+ K L I L +N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL------DLT 639
R L IP + +VL + N I ++P F + L +++ N +T L LT
Sbjct: 29 RSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 640 AL--------RLKPVPQN-----KTLPEFYLGGNPFDCDCS 667
L +LK +P K+L YL NP+DC+CS
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECS 129
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 437 TLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496
T++ E ++ + G Q L L N I L G+ L L LNL+ N++ +
Sbjct: 23 TVNCQERSLASVPAGIPTTTQVL---HLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL 79
Query: 497 EIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSEN 538
+G F+K +L + L N L I GVF L L + L N
Sbjct: 80 PVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVW 542
+VL+L N+I ++E G F+ +L + L N LT + GVF L +L L L N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYY--EIKDGLSIKNLDASHNRIL 588
+ NLK L +I NN + E D L +KN H I+
Sbjct: 103 IPMGVF-DNLKSL----THIYLFNNPWDCECSDILYLKNWIVQHASIV 145
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 396 NLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFK 454
N + ++ F + + L L+L+ N + +P +L L L L NQ+ I G F
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 455 NLQQLTDLRLVDNNIGNLSSGMLY 478
NL+ LT + L +N S +LY
Sbjct: 110 NLKSLTHIYLFNNPWDCECSDILY 133
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 219 QNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q LHL N+I+++ P F + +LP G+F ++ + N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 279 LSRGLFHKLE 288
+ G+F L+
Sbjct: 103 IPMGVFDNLK 112
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
KL L ++++ + LKEL+++ N I ++P S L L+ LDL N+I
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
I TDLR +L+++P L+LS N ++ I+ G F K
Sbjct: 163 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 200
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
RL + LD+N L + +G+F L L +WL+
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
N L +L+ L++ +NLI F E F NL L L L N+I+
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
+I G F I L+ L LD N+LKS + + L+K++L N
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
P+ CSC + L W+ NS K + S S P+R I
Sbjct: 235 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 274
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 14/220 (6%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
++LD S N+I I + ++ +N +L S+ P F + + +L
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELA 206
Query: 638 LTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-MDWL 671
L +LK VP +L + +L NP+DC C +D+L
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + + F+ L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 151 LEHLDLSSNKI 161
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
F IP+++ KN L L N + + + +F LQVL L I + +L
Sbjct: 19 FYKIPDNLPFSTKN-LDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
LS L L N I+ +A G F+ L SLQ L L S F + L+++ + +N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 146 SNLTNLEHLDLSSNKIQSI 164
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 131/285 (45%), Gaps = 35/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
+L S+N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 155 QLNFSSNQVT--DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 211
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
+ G+ +L LTDL L +N I NL+ L L L L L
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
N+I I L + L+ N L DI+ + + L L +L L N++
Sbjct: 270 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 326
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
L+ L + N +S +++ + + I L A HN+I +++ L+
Sbjct: 327 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 368
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D S +L GL
Sbjct: 103 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--------ALSGLT 151
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 152 SLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 256
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 49/241 (20%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 65 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
I+ + L + L SN ++DI+ + L L LN S N + +LK
Sbjct: 121 DID--PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVT---------DLKP 168
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
L + +++ LD S N++ +IS L+ ++E L NN I + P
Sbjct: 169 L----------------ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 615 HTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYLGG 659
+NL + + N ++T LDL L P+ L E LG
Sbjct: 213 LGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 660 N 660
N
Sbjct: 271 N 271
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 22/297 (7%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
+L+ S+N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 155 QLSFSSNQVT--DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 211
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
L L +L L N + ++ G L L +L L+L+ N+I + +L
Sbjct: 212 --PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTE 265
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
++L +N +++I+ L L L L+EN L NL +L ++ N IS ++
Sbjct: 266 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 324
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
+ ++ L S+N++ ++S L+ ++ L +N I + P +NL R+
Sbjct: 325 SLT---KLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL-----ANLTRI 373
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLG--FAVRRASAESNSGEKIECSGGM-DLRILDLSH 200
D +L N+ L LS N+I DI L ++++ S SN ++ + L LD+S
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISS 182
Query: 201 NKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
NK+ D S + K L++L NN+IS I P
Sbjct: 183 NKVS---DISVLAKLTNLESLIATNNQISDITP 212
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D S +L GL
Sbjct: 103 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--------ALSGLT 151
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 152 SLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 256
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 49/241 (20%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 65 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
I+ + L + L SN ++DI+ + L L L+ S N +
Sbjct: 121 DID--PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFSSNQVT------------- 164
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
+ + + +++ LD S N++ +IS L+ ++E L NN I + P
Sbjct: 165 ------------DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 615 HTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYLGG 659
+NL + + N ++T LDL L P+ L E LG
Sbjct: 213 LGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 660 N 660
N
Sbjct: 271 N 271
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 41/193 (21%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP-GSLD 123
K N+ +LE L IS+ K+ + + V + L NL+ L I T N + D+ P G L
Sbjct: 167 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNN------QISDITPLGILT 217
Query: 124 GLRELQVLXXXXXXXXXXXDDV--FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE--S 179
L EL + D+ SL N+ L+L+ N I ++ L + + +
Sbjct: 218 NLDELSL-------NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 180 NSGEKIECSGGMD-LRILDLSHNKLR-------------------TLGDYSGITKFRRLQ 219
N I G+ L L+L+ N+L + D S ++ +LQ
Sbjct: 271 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 220 NLHLENNEISQIA 232
L NN++S ++
Sbjct: 331 RLFFSNNKVSDVS 343
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
KL L ++++ + LKEL+++ N I ++P S L L+ LDL N+I
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
I TDLR +L+++P L+LS N ++ I+ G F K
Sbjct: 165 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 202
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
RL + LD+N L + +G+F L L +WL+
Sbjct: 203 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 58 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL 117
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
N L +L+ L++ +NLI F E F NL L L L N+I+
Sbjct: 118 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
+I G F I L+ L LD N+LKS + + L+K++L N
Sbjct: 178 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
P+ CSC + L W+ NS K + S S P+R I
Sbjct: 237 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 276
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 14/220 (6%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 34 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 94 ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
++LD S N+I I + ++ +N +L S+ P F + + +L
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL-----KELA 208
Query: 638 LTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-MDWL 671
L +LK VP +L + +L NP+DC C +D+L
Sbjct: 209 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 248
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 764 SEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823
SE + VP + T+ ++ N +K IP+++ KN L L N + + + +F
Sbjct: 2 SEPCVEVVP-----NITYQCMELNFYK-IPDNLPFSTKN-LDLSFN--PLRHLGSYSFFS 52
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
LQVL L I + +L LS L L N I+ +A G F+ L SLQ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 884 RLKSFRAFDLNTNSMLRKVYLGNN 907
L S F + L+++ + +N
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHN 136
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 28 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 88 NPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 148 SNLTNLEHLDLSSNKIQSI 166
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 130/285 (45%), Gaps = 36/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 159
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
+L+ N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 160 QLSFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
+ G+ +L LTDL L +N I NL+ L L L L L
Sbjct: 216 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
N+I I L + L+ N L DI+ + + L L +L L N++
Sbjct: 274 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 330
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
L+ L + N +S +++ + + I L A HN+I +++ L+
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 372
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D S +L GL
Sbjct: 108 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--------ALSGLT 156
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 157 SLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 213
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 260
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 54/243 (22%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 70 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGV--FTYLAQLLWLNLSENHLVWFDYAMVPGNL 552
I+ + L + L SN ++DI+ + T L QL +
Sbjct: 126 DID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-------------------- 163
Query: 553 KWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSV 612
GN ++ L + +++ LD S N++ +IS L+ ++E L NN I +
Sbjct: 164 ------GNQVTDLKPLANLT---TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 214
Query: 613 KPHTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYL 657
P +NL + + N ++T LDL L P+ L E L
Sbjct: 215 TPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Query: 658 GGN 660
G N
Sbjct: 273 GAN 275
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 129/285 (45%), Gaps = 36/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
+L N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 155 QLNFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 210
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
+ G+ +L LTDL L +N I NL+ L L L L L
Sbjct: 211 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
N+I I L + L+ N L DI+ + + L L +L L N++
Sbjct: 269 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 325
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
L+ L + N +S +++ + + I L A HN+I +++ L+
Sbjct: 326 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 367
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D S +L GL
Sbjct: 103 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--------ALSGLT 151
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 152 SLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 208
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 255
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 50/241 (20%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 65 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
I+ + L + L SN ++DI+ + L L LN
Sbjct: 121 DID--PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNF------------------- 158
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
GN ++ L + +++ LD S N++ +IS L+ ++E L NN I + P
Sbjct: 159 ----GNQVTDLKPLANLT---TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 211
Query: 615 HTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYLGG 659
+NL + + N ++T LDL L P+ L E LG
Sbjct: 212 LGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 269
Query: 660 N 660
N
Sbjct: 270 N 270
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 143/327 (43%), Gaps = 42/327 (12%)
Query: 329 IDAKTFKDLVFLQ-RLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
ID+ D VF +D++ + + ED ++L N + + + + A L +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFED---ITLNNQKIVTFKNSTMRKLPAALLDSFR 75
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
+ L L++ + ID+ AF +++L + NAI +P +
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----------------- 118
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
F+N+ LT L L N++ +L G+ + P L L++S N + +IE TF+
Sbjct: 119 ------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
L ++L SN LT ++ + + L N+S N L +P ++ LD N I+ +
Sbjct: 173 LQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVR 227
Query: 567 NYYEIKDGLSIKNLDASHNRILEIS-ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLAR 625
++ L+I L HN + + + L+ P VEV N L K + H F L R
Sbjct: 228 GPVNVE--LTI--LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLER 282
Query: 626 VDIYANDITKLDLTALRLKPVPQNKTL 652
+ I N + L+L +P+P K L
Sbjct: 283 LYISNNRLVALNLYG---QPIPTLKVL 306
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 27/275 (9%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
ID F +Q+L + N+I Y+ + F ++ L + L N + + +F+ L
Sbjct: 90 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE-----IPS---------ALSELPF 434
+ L++SNN L I+ F+ ++L+ L LSSN + IPS LS L
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209
Query: 435 ---LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
++ LD N I+ + G +LT L+L NN+ + + L P L ++LS N
Sbjct: 210 PIAVEELDASHNSINVVR-GPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264
Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP-G 550
++ +I F K +RL + + +N L +N + L L+LS NHL+ +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
L+ L + N I +L ++ ++KNL SHN
Sbjct: 325 RLENLYLDHNSIVTL----KLSTHHTLKNLTLSHN 355
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 50/302 (16%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L + I I+ AF + + +Y+ N I ++ H+F + +L+ L L N L ++
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL 462
F N P L TL + N + +IE+ +F+ L +L
Sbjct: 140 RGIFHNT-----------------------PKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 463 RLVDNNI-------------GNLSSGMLYELP---SLEVLNLSKNKIHQIEIGTFEKNKR 506
+L N + N+S +L L ++E L+ S N I+ + N
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVE 233
Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL--VWFDYAMVPGNLKWLDIHGNYISS 564
L ++L N LTD + Y L+ ++LS N L + + + L+ L I N + +
Sbjct: 234 LTILKLQHNNLTDTAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 565 LNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSN 622
LN Y + L + LD SHN +L + E + P + +E L++++N I ++K T N
Sbjct: 293 LNLYGQPIPTLKV--LDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN 349
Query: 623 LA 624
L
Sbjct: 350 LT 351
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
+ I + F + LY+ + I + F + L VL LE N ++ F N
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
KL+ L + N +E I + TF A SLQ LQL NRL
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 127/306 (41%), Gaps = 50/306 (16%)
Query: 215 FRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKN 274
FR+++ L+L + +I +I AF LP +F + ++ + ++N
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 275 SLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTF 334
L L RG+FH + TT RI+ TF
Sbjct: 134 DLSSLPRGIFHNTPKL-----------------TTL---------SMSNNNLERIEDDTF 167
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV---LSKL 391
+ LQ L L +N + +++ + SL++ + Y +L + L + + +L
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY-----------NLLSTLAIPIAVEEL 216
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENG 451
S+N + + + LK L N + + L+ P L +DL N++ KI
Sbjct: 217 DASHNSINVVRGPVNVELTILK---LQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYH 272
Query: 452 SFKNLQQLTDLRLVDNNIGNLSSGMLY--ELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
F +Q+L L + +N + L+ LY +P+L+VL+LS N + +E + + RL
Sbjct: 273 PFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFD-RLEN 328
Query: 510 IRLDSN 515
+ LD N
Sbjct: 329 LYLDHN 334
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 768 ISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGL 824
I +PP + + T + L+ N ++P +F + +L ++N+ +E I + TF
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 825 SSLQVLHLENNLITH 839
+SLQ L L +N +TH
Sbjct: 171 TSLQNLQLSSNRLTH 185
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 782 VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFY 841
V L N + I H F+ + + LY++N+++ V LN + +L+VL L +N + H
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVE 317
Query: 842 --GYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875
+FD LE LYL N I + T + L +L
Sbjct: 318 RNQPQFDRLEN---LYLDHNSIVTLKLSTHHTLKNL 350
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 79/233 (33%), Gaps = 58/233 (24%)
Query: 25 NLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV 84
NLN L +F I KL + +A L + FQN+ L L + L
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLS 136
Query: 85 ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDD 144
LP +F L L+++ NL+ DD
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-------------------------------RIEDD 165
Query: 145 VFCSLANIQTLNLSRNSIRDID--------------------TLGFAVRRASAESNSGEK 184
F + ++Q L LS N + +D + AV A NS
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
+ ++L IL L HN L D + + + L + L NE+ +I + FV
Sbjct: 226 VRGPVNVELTILKLQHN---NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 48/208 (23%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
I T +F +++++L + + LP VF +N+ LT+ L +++ L G
Sbjct: 90 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTV----LVLERNDLSSLPRGI 142
Query: 122 LDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDID--------------- 166
+L L DD F + ++Q L LS N + +D
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 167 -----TLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT---LGDYSGIT----- 213
+ AV A NS + ++L IL L HN L L +Y G+
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262
Query: 214 -------------KFRRLQNLHLENNEI 228
K +RL+ L++ NN +
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 23/297 (7%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 103 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 158
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
+L+ N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 159 QLSFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 214
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
L L +L L N + ++ G L L +L L+L+ N+I + +L
Sbjct: 215 --PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTE 268
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
++L +N +++I+ L L L L+EN L NL +L ++ N IS ++
Sbjct: 269 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 327
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
+ ++ L ++N++ ++S L+ ++ L +N I + P +NL R+
Sbjct: 328 SLT---KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPL-----ANLTRI 376
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D S +L GL
Sbjct: 107 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--------ALSGLT 155
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 156 SLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 212
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 213 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 259
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 54/243 (22%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 69 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGV--FTYLAQLLWLNLSENHLVWFDYAMVPGNL 552
I+ + L + L SN ++DI+ + T L QL +
Sbjct: 125 DID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-------------------- 162
Query: 553 KWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSV 612
GN ++ L + +++ LD S N++ +IS L+ ++E L NN I +
Sbjct: 163 ------GNQVTDLKPLANLT---TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 213
Query: 613 KPHTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYL 657
P +NL + + N ++T LDL L P+ L E L
Sbjct: 214 TPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Query: 658 GGN 660
G N
Sbjct: 272 GAN 274
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 31/171 (18%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGR-KN 802
CP C C VDC+ + + +P IP+ T + L+ N I + GR +
Sbjct: 2 CPAMCHC------EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPH 55
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
++ L + +Q+ I F G S +Q L L N I F L +L L L +N+I
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
+ G+F L SL L L +NPF+C+C
Sbjct: 116 CVMPGSFEHLNSLTSLNL------------------------ASNPFNCNC 142
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 414 ELDLSSNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
EL L+ N + I S LP L L+L NQ++ IE +F+ + +L+L +N I
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+S+ M L L+ LNL N+I + G+FE L ++ L SN
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
F L L +L+L+ N + IE NAF ++ + L EN+I I+ +F GL+ L L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSN 420
+N + + +F++ ++L L+L+SN
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 460 TDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
T+L L DN +G +SS G+ LP L L L +N++ IE FE + ++L N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 519 DI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
+I N +F L QL LNL +N + ++PG+ + H N ++SLN
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQI----SCVMPGSFE----HLNSLTSLN 132
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLG 658
++ L + N IK + F L +++Y N I+ + + +L L
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLA 134
Query: 659 GNPFDCDCSMDWL 671
NPF+C+C + W
Sbjct: 135 SNPFNCNCHLAWF 147
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 23/297 (7%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D +L L L L NN I I+ +L NL+ + LS N I I+A +GL L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
+L N + D K N + L+ LD+SSN + +I S L++L L++L NQIS I
Sbjct: 155 QLNFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 210
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
L L +L L N + ++ G L L +L L+L+ N+I + +L
Sbjct: 211 --PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTE 264
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
++L +N +++I+ L L L L+EN L NL +L ++ N IS ++
Sbjct: 265 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 323
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
+ ++ L S+N++ ++S L+ ++ L +N I + P +NL R+
Sbjct: 324 SLT---KLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL-----ANLTRI 372
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
N+ +L L + N ++ + +D L NL RL +++ + D S +L GL
Sbjct: 103 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--------ALSGLT 151
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS--AESNSGEK 184
LQ L +L ++ L++S N + DI L S A +N
Sbjct: 152 SLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 208
Query: 185 IECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
I G + +L L L+ N+L+ +G + +T L +L L NN+IS +AP
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAP 255
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 50/241 (20%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L ++ NQ++ I KNL +L D+ + +N I +++ L L +L L L N+I
Sbjct: 65 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
I+ + L + L SN ++DI+ + L L LN
Sbjct: 121 DID--PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNF------------------- 158
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
GN ++ L + +++ LD S N++ +IS L+ ++E L NN I + P
Sbjct: 159 ----GNQVTDLKPLANLT---TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 211
Query: 615 HTFFDKSNLARVDIYAN------------DITKLDLT---ALRLKPVPQNKTLPEFYLGG 659
+NL + + N ++T LDL L P+ L E LG
Sbjct: 212 LGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 269
Query: 660 N 660
N
Sbjct: 270 N 270
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 41/193 (21%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP-GSLD 123
K N+ +LE L IS+ K+ + + V + L NL+ L I T N + D+ P G L
Sbjct: 166 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNN------QISDITPLGILT 216
Query: 124 GLRELQVLXXXXXXXXXXXDDV--FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE--S 179
L EL + D+ SL N+ L+L+ N I ++ L + + +
Sbjct: 217 NLDELSL-------NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 269
Query: 180 NSGEKIECSGGMD-LRILDLSHNKLR-------------------TLGDYSGITKFRRLQ 219
N I G+ L L+L+ N+L + D S ++ +LQ
Sbjct: 270 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 220 NLHLENNEISQIA 232
L NN++S ++
Sbjct: 330 RLFFSNNKVSDVS 342
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 15/264 (5%)
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIE 449
+T N+ + + + + ++ L+L+ I EI + A + ++ L +G N I +
Sbjct: 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
F+N+ LT L L N++ +L G+ + P L L++S N + +IE TF+ L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
++L SN LT ++ + + L N+S N L +P ++ LD N I+ +
Sbjct: 170 LQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVRGPV 224
Query: 570 EIKDGLSIKNLDASHNRILEIS-ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
++ L+I L HN + + + L+ P VEV N L K + H F L R+ I
Sbjct: 225 NVE--LTI--LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYI 279
Query: 629 YANDITKLDLTALRLKPVPQNKTL 652
N + L+L +P+P K L
Sbjct: 280 SNNRLVALNLYG---QPIPTLKVL 300
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 27/275 (9%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
ID F +Q+L + N+I Y+ + F ++ L + L N + + +F+ L
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE-----IPS---------ALSELPF 434
+ L++SNN L I+ F+ ++L+ L LSSN + IPS LS L
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203
Query: 435 ---LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
++ LD N I+ + G +LT L+L NN+ + + L P L ++LS N
Sbjct: 204 PIAVEELDASHNSINVVR-GPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 258
Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN 551
++ +I F K +RL + + +N L +N + L L+LS NHL+ + +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Query: 552 -LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
L+ L + N I +L ++ ++KNL SHN
Sbjct: 319 RLENLYLDHNSIVTL----KLSTHHTLKNLTLSHN 349
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 50/305 (16%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
++ L+L + I I+ AF + + +Y+ N I ++ H+F + +L+ L L N L
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
++ F N P L TL + N + +IE+ +F+ L
Sbjct: 131 SLPRGIFHNT-----------------------PKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 460 TDLRLVDNNI-------------GNLSSGMLYELP---SLEVLNLSKNKIHQIEIGTFEK 503
+L+L N + N+S +L L ++E L+ S N I+ +
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--- 224
Query: 504 NKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL--VWFDYAMVPGNLKWLDIHGNY 561
N L ++L N LTD + Y L+ ++LS N L + + + L+ L I N
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 562 ISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFD 619
+ +LN Y + L + LD SHN +L + E + P + +E L++++N I ++K T
Sbjct: 284 LVALNLYGQPIPTLKV--LDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340
Query: 620 KSNLA 624
NL
Sbjct: 341 LKNLT 345
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 127/326 (38%), Gaps = 84/326 (25%)
Query: 212 ITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYA 271
+ FR+++ L+L + +I +I AF LP +F + ++ +
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 272 QKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDA 331
++N L L RG+FH +
Sbjct: 125 ERNDLSSLPRGIFHNTPK------------------------------------------ 142
Query: 332 KTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL 391
L L + NN++ IED+ F + +L + LS NR+ H+ L L+
Sbjct: 143 --------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HA 191
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAI--------VEI------------PSALSE 431
+S NLL + A++ELD S N+I VE+ + L
Sbjct: 192 NVSYNLLSTLAIPI-----AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN 246
Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY--ELPSLEVLNLS 489
P L +DL N++ KI F +Q+L L + +N + L+ LY +P+L+VL+LS
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLS 303
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSN 515
N + +E + RL + LD N
Sbjct: 304 HNHLLHVERNQ-PQFDRLENLYLDHN 328
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%)
Query: 792 IPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKL 851
I + F + LY+ + I + F + L VL LE N ++ F N KL
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143
Query: 852 SELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
+ L + N +E I + TF A SLQ LQL NRL
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 768 ISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGL 824
I +PP + + T + L+ N ++P +F + +L ++N+ +E I + TF
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 825 SSLQVLHLENNLITH 839
+SLQ L L +N +TH
Sbjct: 165 TSLQNLQLSSNRLTH 179
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 48/208 (23%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
I T +F +++++L + + LP VF +N+ LT+ L +++ L G
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTV----LVLERNDLSSLPRGI 136
Query: 122 LDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDID--------------- 166
+L L DD F + ++Q L LS N + +D
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 167 -----TLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT---LGDYSGIT----- 213
+ AV A NS + ++L IL L HN L L +Y G+
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256
Query: 214 -------------KFRRLQNLHLENNEI 228
K +RL+ L++ NN +
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRL 284
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 79/233 (33%), Gaps = 58/233 (24%)
Query: 25 NLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV 84
NLN L +F I KL + +A L + FQN+ L L + L
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLS 130
Query: 85 ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDD 144
LP +F L L+++ NL+ DD
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-------------------------------RIEDD 159
Query: 145 VFCSLANIQTLNLSRNSIRDID--------------------TLGFAVRRASAESNSGEK 184
F + ++Q L LS N + +D + AV A NS
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
+ ++L IL L HN L D + + + L + L NE+ +I + FV
Sbjct: 220 VRGPVNVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 782 VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFY 841
V L N + I H F+ + + LY++N+++ V LN + +L+VL L +N + H
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVE 311
Query: 842 --GYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875
+FD LE LYL N I + T + L +L
Sbjct: 312 RNQPQFDRLEN---LYLDHNSIVTLKLSTHHTLKNL 344
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N++ ++ G + L + L N L I F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++Q++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N+L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ V
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAV 239
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L +LS N L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQL-- 89
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
+ L + G + +L LD S NR+ L + L ++
Sbjct: 90 ----------QSLPLLGQTLPALTV------------LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N +T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N++ ++ G + L + L N L I F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++Q++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N+L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L +LS N L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQL-- 89
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
+ L + G + +L LD S NR+ L + L ++
Sbjct: 90 ----------QSLPLLGQTLPALTV------------LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N +T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N++ ++ G + L + L N L I F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++Q++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N+L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL------------ 82
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
D+ N + SL + L++ LD S NR+ L + L ++
Sbjct: 83 -------------DLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL--------------RLKPV 646
L++ N +K++ P L ++ + N +T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N++ ++ G + L + L N L I F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++Q++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N+L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL------------ 82
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
D+ N + SL + L++ LD S NR+ L + L ++
Sbjct: 83 -------------DLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N +T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N + ++ G + L + L N L I F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKT------IP----NHVFIGRKNMLSLYVNN 810
V+C ++ ++ +PP +P D T ++L N T +P + + R + L V+
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 811 S--------------QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
+ Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L +LS N L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQL-- 89
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
+ L + G + +L LD S NR+ L + L ++
Sbjct: 90 ----------QSLPLLGQTLPALTV------------LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N++T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 147/357 (41%), Gaps = 56/357 (15%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I +TF L+ L LDL I +I ++ F S + L T+ L+ N + + NG L
Sbjct: 45 IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSL 104
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF--LKTLDLGENQIS 446
L L + N++ N L+ L L SN I I + P LK LD N I
Sbjct: 105 KHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFP-KDFPARNLKVLDFQNNAIH 163
Query: 447 KIENGSFKNLQQLTDLRLVDNN-------IGNLSSGMLYEL-----PSLEVL--NLSKNK 492
I ++L+Q +L L N +G S + L P+L V+ L +
Sbjct: 164 YISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNST 223
Query: 493 IHQIEIGTFEK---------------NKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLS 536
+ +GTFE + ++ L + +DI+ F QL L+L+
Sbjct: 224 TQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLT 283
Query: 537 ENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
HL +P +K L++ + S+N++ +++ +IS + P
Sbjct: 284 ATHL-----KGLPSGMKGLNLLKKLVLSVNHF----------------DQLCQISAANFP 322
Query: 597 NSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
S+ L+I N+ K +K NL +D+ NDI D +L+LK + +TL
Sbjct: 323 -SLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 141/352 (40%), Gaps = 67/352 (19%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
++ L+L+ + I F L + L+ + + + + GL +L KL LS N
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFD 311
Query: 400 NIDSKAFKNCSALKELDLSSNA--IVEIPSALSELPFLKTLDLGENQISKIENGSF--KN 455
+ + N +L L + N + L +L L+TLDL N I + S KN
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKN 371
Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L L L L N L S E P LE+L+L+ ++H N + + + +
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH--------INAPQSPFQ-NLH 422
Query: 516 FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL 575
FL +N + + L+ S HL+ A +P L+ L++ GN+ +DG
Sbjct: 423 FLQVLNLTYCF------LDTSNQHLL----AGLPV-LRHLNLKGNH---------FQDG- 461
Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT- 634
I + + L S+EVL +++ + S+ F ++ VD+ N +T
Sbjct: 462 ----------TITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC 511
Query: 635 -------------------KLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCS 667
+++ + RL P+ ++ L NP DC CS
Sbjct: 512 DSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQS--TINLSHNPLDCTCS 561
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
+C +S +P +P + N TI N F N+ L + QI I TF
Sbjct: 15 NCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTF 74
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
L L L N + + + L L+L + I + + L +L+ L L
Sbjct: 75 QSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLG 134
Query: 882 GNRLKSFR 889
N + S +
Sbjct: 135 SNHISSIK 142
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 41 PTDLITKLNIDCDATVLLDSSIT-------TKSFQNIYSLEELKISNCKLVELPVDVFSG 93
P L ++ +C LLD + T FQN++ L+ L ++ C L + +G
Sbjct: 385 PLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAG 444
Query: 94 LRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQ 153
L L+ L + + Q K +L L + L+VL F SL +
Sbjct: 445 LPVLRHLNLKGNHFQDGTITKTNL----LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMS 500
Query: 154 TLNLSRNSIR--DIDTL 168
++LS NS+ ID+L
Sbjct: 501 HVDLSHNSLTCDSIDSL 517
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 69/187 (36%), Gaps = 44/187 (23%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQW---------- 109
S I++ +FQ L+EL ++ L LP + GL LK+L ++ +
Sbjct: 264 SDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFP 322
Query: 110 --------DKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSL-----ANIQTLN 156
KKL L G L+ L LQ L CSL +++QTLN
Sbjct: 323 SLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASD---CCSLQLKNLSHLQTLN 379
Query: 157 LSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR 216
LS N + + F EC L +LDL+ +L S
Sbjct: 380 LSHNEPLGLQSQAFK--------------ECP---QLELLDLAFTRLHINAPQSPFQNLH 422
Query: 217 RLQNLHL 223
LQ L+L
Sbjct: 423 FLQVLNL 429
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N + ++ G + L + L N L I F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKT------IP----NHVFIGRKNMLSLYVNN 810
V+C ++ ++ +PP +P D T ++L N T +P + + R + L V+
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 811 S--------------QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
+ Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL------------ 82
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
D+ N + SL + L++ LD S NR+ L + L ++
Sbjct: 83 -------------DLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N++T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 818 NQTFNGL--SSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875
N TF GL S ++ L + I F + L +L L +N I I + F L L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
+ L LD N+LKS + + L+K++L NP+ CSC + L W+ NS K +
Sbjct: 326 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG--- 382
Query: 936 ISCVIDESSPPIRKEI 951
S S P+R I
Sbjct: 383 -SAKCSGSGKPVRSII 397
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 135/350 (38%), Gaps = 108/350 (30%)
Query: 415 LDLSSNAIVEIP----SALSELPFLKT----------------------LDLGENQISKI 448
+DLS N+I E+ S L +L FLK L L NQ ++
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 449 ENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYE-LPSLEVLNLSKNKIHQIEIGTFEKNKR 506
E G+F L L L L N+ G + SG ++ L SLE+L L N I +I+ +F N R
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 507 LAAIRLDSNF----------LTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK--- 553
+ LD F L + G L +L + L + + W + K
Sbjct: 155 RFHV-LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 554 --WLDIHGNYISS-------------------LNNYYEIK-----------DGLSIKNLD 581
LD+ GN L+N Y + D + K L+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 582 ASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD---- 637
AS + ++S+ I L+KSV H ++L ++ + N+I K+D
Sbjct: 274 ASGVKTCDLSKSKI----------FALLKSVFSHF----TDLEQLTLAQNEINKIDDNAF 319
Query: 638 --LTALR--------LKPVPQN-----KTLPEFYLGGNPFDCDC-SMDWL 671
LT L+ LK VP +L + +L NP+DC C +D+L
Sbjct: 320 WGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 369
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 32/231 (13%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAF-LSLYNLHTIYLSENRIHHITAHL---FNG----L 385
FK L L+ L LR+N+I I+ +F L++ H + L+ N++ I F G L
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184
Query: 386 YVLSKLTLS--NNLLVNID--SKAFKNCSALKELDLSSNAIVE--------------IPS 427
LS +TL N + + FKN S + LDLS N E I S
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243
Query: 428 ALSELPFLKTLDLGENQISKIENGSFKNLQQ--LTDLRLVDNNIGNLSSGMLYELPSLEV 485
+ + G +N +FK L+ + L + I L + LE
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303
Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL--LWL 533
L L++N+I++I+ F L + LD+N L + +G+F L L +WL
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL 354
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 402 DSKAFKN--CSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
D+ FK S +K DLS + I + S S L+ L L +N+I+KI++ +F L
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
L +L L N + ++ G+ L SL+ + L N
Sbjct: 325 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE-VILNQTFNGLSSLQVLH 831
P +P +V L N+ + F +++ L V VI N TF GLSSL +L
Sbjct: 26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85
Query: 832 LENNLITHFYGYEFDNLEKLSELYLQENRIE--YIANGTFNALISLQVLQLDGNRLKSFR 889
L+ N F+ L L L L + ++ ++ F L SL++L L N +K +
Sbjct: 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 890 --AFDLN 894
+F LN
Sbjct: 146 PASFFLN 152
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
F L++L L N I I+DNAF L +L + L N++ + +F+ L L K+ L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL 354
Query: 394 SNN 396
N
Sbjct: 355 HTN 357
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 155/386 (40%), Gaps = 84/386 (21%)
Query: 479 ELPS-LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF--LTDINGVFTYLAQLLWLNL 535
ELP+ + ++LS N I ++ +F + + L ++++ L N F L+ L+ L L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 536 SENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL 593
N + + G NL+ L L+ NLD + +L +
Sbjct: 87 DYNQFLQLETGAFNGLANLEVLT------------------LTQCNLDGA---VLSGNFF 125
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLAR---VDIYANDITKL-----------DLT 639
S+E+L + +N IK ++P +FF N+ R +D+ N + + T
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 640 ALRLKPVPQNKTLPEFYLG----GNPFDCDCSMDWLPIINNNTSPSMERQYPKIM---DL 692
LRL + + + E++LG GNPF + S+ L + N SM +++ + +
Sbjct: 184 LLRLSSITL-QDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241
Query: 693 DNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFH 752
+++ +Y+ GS+ + P F E + K C
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDN-----------------FTFKGLEASGVKTC---- 280
Query: 753 DQNWNTNVVDCSEQQISTVPPRI---PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVN 809
D S+ +I + + D + L N I ++ F G ++ L ++
Sbjct: 281 ---------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALD 331
Query: 810 NSQIEVILNQTFNGLSSLQVLHLENN 835
+Q++ + + F+ L+SLQ + L N
Sbjct: 332 TNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXX 242
+ +E SG ++ DLS +K+ L S + F L+ L L NEI++I NAF
Sbjct: 270 KGLEASG---VKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 243 XXXXXXXXXXVSLPEGLFSSCRDISEIYAQKN 274
S+P+G+F + +I+ N
Sbjct: 326 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N + ++ G + L + L N L I F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKT------IP----NHVFIGRKNMLSLYVNN 810
V+C ++ ++ +PP +P D T ++L N T +P + + R + L V+
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 811 S--------------QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
+ Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL------------ 82
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
D+ N + SL + L++ LD S NR+ L + L ++
Sbjct: 83 -------------DLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N++T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N + ++ G + L + L N L I F
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++ ++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L +LS N L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQL-- 89
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
+ L + G + +L LD S NR+ L + L ++
Sbjct: 90 ----------QSLPLLGQTLPALTV------------LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + ND+T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%)
Query: 337 LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
L L LD+ N + + A L L +YL N + + L L KL+L+NN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 397 LLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
L + + L L L N++ IP
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N + ++ G + L + L N L I F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++ ++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N L A LN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 115
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 176 TLLLQENSLYTIPKGFF 192
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL------------ 82
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
D+ N + SL + L++ LD S NR+ L + L ++
Sbjct: 83 -------------DLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQ 127
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N++T+L L L +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++LSEN ++ + L++L L L + L LDLS N + +P
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 94
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
LP L LD+ N+++ + G+ + L +L +L L N + L G+L P LE L
Sbjct: 95 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+L+ N + ++ G + L + L N L I F
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
V+C ++ ++ +PP +P D T ++L N + T+ + + + N+
Sbjct: 16 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 75
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
L L N Q +L QT L +L VL + N +T L +L ELYL
Sbjct: 76 TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
+ N ++ + G L+ L L N L A LN
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
+ +L +L NP+ C+C L + W+ DN+ V K G+D+ +
Sbjct: 193 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
+L + TL+LS N ++ + LG + L +LD+S N+L +L
Sbjct: 76 TLPVLGTLDLSHNQLQSLPLLGQTLPA------------------LTVLDVSFNRLTSL- 116
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDIS 267
+ LQ L+L+ NE+ + P LP GL + ++
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
Query: 268 EIYAQKNSLVELSRGLF 284
+ Q+NSL + +G F
Sbjct: 177 TLLLQENSLYTIPKGFF 193
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVW 542
+L+LS+N ++ + T RL + LD LT ++G L L
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL------------ 83
Query: 543 FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNSVE 600
D+ N + SL + L++ LD S NR+ L + L ++
Sbjct: 84 -------------DLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQ 128
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR--------------LKPV 646
L++ N +K++ P L ++ + N++T+L L L +
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 647 PQN----KTLPEFYLGGNPFDCDCSM 668
P+ LP +L GNP+ C+C +
Sbjct: 189 PKGFFGSHLLPFAFLHGNPWLCNCEI 214
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394
+ L L LD+ N + + A L L +YL N + + L L KL+L+
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
NN L + + L L L N++ IP
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 191
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
+ +L L L N I + FD+LE L + N++ + G F + L+ L L N
Sbjct: 146 MRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASN 204
Query: 884 RLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
+LKS + + L+K++L NP+ CSC + L W+ NS K + S S
Sbjct: 205 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GS 260
Query: 944 SPPIRKEI 951
P+R I
Sbjct: 261 GKPVRSII 268
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Query: 375 HHITAHLFNGLYVLSKLTL---SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALS 430
H A + + L ++S TL S+NL +NI + LK ++ + IP+ L+
Sbjct: 85 HTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLT 144
Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
++ L L+L N I ++ + F +L+ L + N + + G+ ++P L+ LNL+
Sbjct: 145 DMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLN 534
N++ + G F++ L I L +N YL++ WLN
Sbjct: 204 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR--WLN 245
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L+R + +I N + NL + L N I + +HLF+ L L + +N L
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR 183
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
+ F LK+L+L+SN + +P +
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-- 397
L LDL N++ + +++F L L +L N I H+ +H +GL+ + L L +
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 398 -------LVNIDSKAFKNCSALKELDLSSNAIVEIPS----------------------- 427
L ID +F+ L+ L++ N I I S
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 428 -------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE- 479
+L+ P L L+L +N+ISKIE+ +F L L L L N IG +G +
Sbjct: 375 LTNETFVSLAHSP-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 433
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV---FTYLAQLLWLNLS 536
L ++ + LS NK Q+ +F L + L L +++ F L L L+LS
Sbjct: 434 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 493
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY-------YEIKDGLS---IKNLDASH 584
N++ + M+ G L+ LD+ N ++ L + Y +K GLS I NL+++
Sbjct: 494 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNG 552
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
+ + ++++ + N + ++ F ++ +L +++ N IT ++
Sbjct: 553 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-- 610
Query: 645 PVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
P + L E + NPFDC C S+ W
Sbjct: 611 --PAFRNLTELDMRFNPFDCTCESIAWF 636
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQIS 446
++ L L++N L + + F S L LD+ N I ++ P +LP LK L+L N++S
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
++ + +F LT+L L+ N+I + + + +L L+LS N + ++GT
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 145
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L +N + + F L ++ + N I + L L +L L L +N L +
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLK-----TLDLGENQISKIENGSFKNLQ 457
K F C+ L EL L SN+I +I + PF+K TLDL N +S + G+ L+
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLE 150
Query: 458 QLTDLRLVDNNIGNLSSGML--YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
L +L L +N I L S L + SL+ L LS N+I + G F RL + L+
Sbjct: 151 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 152/396 (38%), Gaps = 29/396 (7%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
SL L L+ SIR++ + S + G K +L +LDLS+N L +G
Sbjct: 215 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-----WTNLTMLDLSYNNLNVVG 269
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVA------XXXXXXXXXXXXXXVSLP---EG 258
+ S +L+ LE N I + ++ SLP +
Sbjct: 270 NDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 328
Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXX-- 316
F + + + + N + + +F L + TF+
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 388
Query: 317 XXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIH 375
++I++ F L L+ LDL N IG + + L N+ IYLS N+
Sbjct: 389 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 448
Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDS--KAFKNCSALKELDLSSNAIVEIPSALSE-L 432
+T + F + L +L L L N+DS F+ L LDLS+N I I + E L
Sbjct: 449 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 508
Query: 433 PFLKTLDLGENQISKIENGS--------FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
L+ LDL N ++++ + K L L L L N + + +L L+
Sbjct: 509 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 568
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+++L N ++ + F L ++ L N +T +
Sbjct: 569 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 604
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGL 385
++I++ F L L+ LDL N IG + + L N+ IYLS N+ +T + F +
Sbjct: 399 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 458
Query: 386 YVLSKLTLSNNLLVNIDSK--------------------------AFKNCSALKELDLSS 419
L +L L L N+DS + L+ LDL
Sbjct: 459 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 518
Query: 420 NAIVEI-----PSA----LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
N + + P L L L L+L N +I FK+L +L + L NN+
Sbjct: 519 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 578
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
L + + SL+ LNL KN I +E F
Sbjct: 579 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 99/251 (39%), Gaps = 41/251 (16%)
Query: 329 IDAKTFKDLVFLQRLDLRN----------------------------NSIGYIEDNAFLS 360
I + F L+ L+ L L N N I IE +AF
Sbjct: 349 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 408
Query: 361 LYNLHTIYLSENRI-HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
L +L + L N I +T + GL + ++ LS N + + +F +L+ L L
Sbjct: 409 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 468
Query: 420 NAIVEI---PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL---- 472
A+ + PS L L LDL N I+ I + + L++L L L NN+ L
Sbjct: 469 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 528
Query: 473 -SSGMLY---ELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYL 527
G +Y L L +LNL N +I + F+ L I L N L + VF
Sbjct: 529 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 588
Query: 528 AQLLWLNLSEN 538
L LNL +N
Sbjct: 589 VSLKSLNLQKN 599
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRASAES-----NSGEKIE---CSGGMDLRILDLSHN 201
NI LNL+ N +R + F R + S N+ K+E C L++L+L HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 202 KLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
+L L D + L LHL +N I +I N FV
Sbjct: 89 ELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPFV 123
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GLS L +L+LE+N F +L +L + L N + + FN +SL+ L L
Sbjct: 539 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 598
Query: 883 NRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
N + S + F + L ++ + NPF C+C ++ WI
Sbjct: 599 NLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWI 640
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 9/223 (4%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
++++ + + L L+ L+L++N + + D F NL ++L N I I + F
Sbjct: 67 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 126
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL---PFLKTLDLGEN 443
L L LS+N L + L+EL LS+N I + S ++ LK L+L N
Sbjct: 127 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 186
Query: 444 QISKIENGSFKNLQQLTDLRLVDNNIG-NLSSGMLYELP--SLEVLNLSKNKIHQIEIGT 500
QI + G F + +L L L + +G +L+ + EL S+ L+LS +++ T
Sbjct: 187 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 246
Query: 501 F--EKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
F K L + L N L + N F +L QL + L N++
Sbjct: 247 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
K L L L+L +N I F L+ L I L N ++ + A +FN L L L
Sbjct: 537 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 596
Query: 394 SNNLLVNIDSK----AFKNCSALKELDLSSN 420
NL+ +++ K AF+N L ELD+ N
Sbjct: 597 QKNLITSVEKKVFGPAFRN---LTELDMRFN 624
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
C+ H+ V DCS +++ VP +P + T + L N + +P F + SL
Sbjct: 7 CTVSHE------VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 60
Query: 808 VN------------------------NSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY 843
V ++++ + ++TF ++L LHL +N I
Sbjct: 61 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 120
Query: 844 EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA--FDLNTNSMLRK 901
F + L L L N + GT L +LQ L L N++++ ++ D+ NS L+K
Sbjct: 121 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 180
Query: 902 VYLGNN---PFSCSC 913
+ L +N FS C
Sbjct: 181 LELSSNQIKEFSPGC 195
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 788 TFKTIPNHVFI--GRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH-FYGYE 844
+ +T+ N F+ + L + ++I I + F+ L L+VL L N I G E
Sbjct: 371 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 430
Query: 845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
+ LE + E+YL N+ + +F + SLQ L L LK
Sbjct: 431 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 472
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 127/529 (24%), Positives = 207/529 (39%), Gaps = 91/529 (17%)
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE- 431
++ HI L + + VL+ L++N L + F S L LD N+I ++ L +
Sbjct: 15 KLTHIPDDLPSNITVLN---LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI 71
Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
LP LK L+L N++S+I + +F LT+L L+ N+I + S +L L+LS N
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 492 KIHQIEIGT-----------FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
+ ++GT KNK LA + FL + + L L+LS N L
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN--------SSLRKLDLSSNPL 183
Query: 541 VWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVE 600
F PG + + G + L N ++ L+ K E+S SI N
Sbjct: 184 KEFS----PGCFQTI---GKLFALLLNNAQLNPHLTEK-------LCWELSNTSIQN--- 226
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
L + NN + + TF + ++T+LDL+ L V G
Sbjct: 227 -LSLANNQLLATSESTF--------SGLKWTNLTQLDLSYNNLHDV-----------GNG 266
Query: 661 PFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC 720
F S+ +L + NN R + + +L + K +++ S L +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNI------ 320
Query: 721 PYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT 780
D F E+ D + F T +V +S
Sbjct: 321 --DDFSFQWLKYLEYLNMDDNNIPSTKSNTF------TGLVSLKYLSLSKT--------- 363
Query: 781 HVYLDGNTFKTIPNHVFI--GRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
+ +T+ N F+ +L+L + + I I N TF+ L L++L L N I
Sbjct: 364 -----FTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIE 418
Query: 839 H-FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
G E+ L + E+YL N+ ++ +F + SLQ L L LK
Sbjct: 419 QKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALK 467
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 27/303 (8%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
++++ + + L L+ L+L++N + I D F+ NL + L N IH I ++ F
Sbjct: 62 SKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQK 121
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF-----LKTLDLG 441
L KL LS+N L + L+EL L+ N I+ + S EL F L+ LDL
Sbjct: 122 NLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRS--EELEFLGNSSLRKLDLS 179
Query: 442 ENQISKIENGSFKNLQQLTDLRLVDNNIG-NLSSGMLYELP--SLEVLNLSKNKIHQIEI 498
N + + G F+ + +L L L + + +L+ + +EL S++ L+L+ N++
Sbjct: 180 SNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSE 239
Query: 499 GTFE--KNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555
TF K L + L N L D+ NG F+YL L +L+L N N++ L
Sbjct: 240 STFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN------------NIQRL 287
Query: 556 DIHGNYISSLNNYYEIKDGLSIKNLD-ASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
Y S Y +K + +++ ASH I + S +E L +++N I S K
Sbjct: 288 SPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFS-FQWLKYLEYLNMDDNNIPSTKS 346
Query: 615 HTF 617
+TF
Sbjct: 347 NTF 349
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 47/351 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
ID +F+ L +L+ L++ +N+I + N F L +L + LS+ F L
Sbjct: 320 IDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT---------FTSLQ-- 368
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA-LSELPFLKTLDLGENQI-S 446
TL+N V++ S L L+L+ N I +I + S L L+ LDLG N+I
Sbjct: 369 ---TLTNETFVSLAH------SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQ 419
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI--GTFEKN 504
K+ ++ L+ + ++ L N LS+ +PSL+ L L + + ++I F
Sbjct: 420 KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPL 479
Query: 505 KRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYIS 563
+ L + L +N + +IN + L L L+ N+L PG N++
Sbjct: 480 RNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGG------PVNFLK 533
Query: 564 SLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEV--LFINNNLIKSVKPHTFFDKS 621
L++ L I NL++ N + EI N E+ + + N + ++P F D++
Sbjct: 534 GLSH-------LHILNLES--NGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQT 584
Query: 622 NLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
+L +++ N IT ++ P + L + NPFDC C S+ W
Sbjct: 585 SLRSLNLQKNLITSVEKDVFG----PPFQNLNSLDMRFNPFDCTCESISWF 631
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 112/495 (22%), Positives = 194/495 (39%), Gaps = 73/495 (14%)
Query: 192 DLRILDLSHNKLRTL---------------GDYSGITKFRR--------LQNLHLENNEI 228
++ +L+L+HN+LR L ++ I+K L+ L+L++NE+
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 229 SQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE 288
SQI+ FV C +++E+ NS+ ++ F +
Sbjct: 86 SQISDQTFVF------------------------CTNLTELDLMSNSIHKIKSNPFKNQK 121
Query: 289 QXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNN 348
+ + R + F L++LDL +N
Sbjct: 122 NLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSN 181
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGL--YVLSKLTLSNNLLVNIDSKA 405
+ F ++ L + L+ +++ H+T L L + L+L+NN L+
Sbjct: 182 PLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSEST 241
Query: 406 FKNC--SALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL 462
F + L +LDLS N + ++ + S LP L+ L L N I ++ SF L L L
Sbjct: 242 FSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Query: 463 RL----VDNNIG-----NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
L ++ N+ L LE LN+ N I + TF L + L
Sbjct: 302 SLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Query: 514 SNFL---TDINGVFTYLAQ--LLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLN 566
F T N F LA LL LNL++NH+ G L+ LD+ N I
Sbjct: 362 KTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKL 421
Query: 567 NYYEIKDGLSIKNLDASHNRILEI--SELSIPNSVEVLFINNNLIKSV--KPHTFFDKSN 622
+ E + +I + S+N+ L++ S ++ S++ L + +K+V P F N
Sbjct: 422 SGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRN 481
Query: 623 LARVDIYANDITKLD 637
L +D+ N+I ++
Sbjct: 482 LTILDLSNNNIANIN 496
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 159/391 (40%), Gaps = 64/391 (16%)
Query: 157 LSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR 216
LS SI+++ + S + SG K +L LDLS+N L +G+ S +
Sbjct: 219 LSNTSIQNLSLANNQLLATSESTFSGLK-----WTNLTQLDLSYNNLHDVGNGS-FSYLP 272
Query: 217 RLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSL 276
L+ L LE N I +++P +F S+ R +S A
Sbjct: 273 SLRYLSLEYNNIQRLSPRSFYG---------------------LSNLRYLSLKRAFTKQS 311
Query: 277 VELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKD 336
V L+ ID+ +F + TF
Sbjct: 312 VSLA--------------------SHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Query: 337 LVFLQRLDLRNN--SIGYIEDNAFLSLYN--LHTIYLSENRIHHITAHLFNGLYVLSKLT 392
LV L+ L L S+ + + F+SL + L T+ L++N I I F+ L L L
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 393 LS-NNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIE- 449
L N + + + ++ + E+ LS N +++ S+ + +P L+ L L + ++
Sbjct: 412 LGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDI 471
Query: 450 -NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI--------EIGT 500
F+ L+ LT L L +NNI N++ +L L +LE+L+ N + ++ +
Sbjct: 472 SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNF 531
Query: 501 FEKNKRLAAIRLDSNFLTDIN-GVFTYLAQL 530
+ L + L+SN L +I GVF L +L
Sbjct: 532 LKGLSHLHILNLESNGLDEIPVGVFKNLFEL 562
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLS------------- 805
NV DCS +++ +P +P + T + L N + +P F R + L+
Sbjct: 7 NVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFT-RYSQLAILDAGFNSISKLE 65
Query: 806 ------------LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSE 853
L + ++++ I +QTF ++L L L +N I F N + L +
Sbjct: 66 PELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIK 125
Query: 854 LYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN--TNSMLRKVYLGNNP--- 908
L L N + GT L +LQ L L N++ + R+ +L NS LRK+ L +NP
Sbjct: 126 LDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKE 185
Query: 909 FSCSC-ATLQELQTWIIDNS 927
FS C T+ +L +++N+
Sbjct: 186 FSPGCFQTIGKLFALLLNNA 205
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GLS L +L+LE+N + F NL +L + L N + + F+ SL+ L L
Sbjct: 534 GLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQK 593
Query: 883 NRLKS-----FRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
N + S F N NS+ + NPF C+C ++ WI
Sbjct: 594 NLITSVEKDVFGPPFQNLNSLDMRF----NPFDCTCESISWFVNWI 635
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-- 397
L LDL N++ + +++F L L +L N I H+ +H +GL+ + L L +
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 398 -------LVNIDSKAFKNCSALKELDLSSNAIVEIPS----------------------- 427
L ID +F+ L+ L++ N I I S
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 428 -------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE- 479
+L+ P L L+L +N+ISKIE+ +F L L L L N IG +G +
Sbjct: 380 LTNETFVSLAHSP-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 438
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV---FTYLAQLLWLNLS 536
L ++ + LS NK Q+ +F L + L L +++ F L L L+LS
Sbjct: 439 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 498
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY-------YEIKDGLS---IKNLDASH 584
N++ + M+ G L+ LD+ N ++ L + Y +K GLS I NL+++
Sbjct: 499 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNG 557
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
+ + ++++ + N + ++ F ++ +L +++ N IT ++
Sbjct: 558 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-- 615
Query: 645 PVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
P + L E + NPFDC C S+ W
Sbjct: 616 --PAFRNLTELDMRFNPFDCTCESIAWF 641
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQIS 446
++ L L++N L + + F S L LD+ N I ++ P +LP LK L+L N++S
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
++ + +F LT+L L+ N+I + + + +L L+LS N + ++GT
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 150
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L +N + + F L ++ + N I + L L +L L L +N L +
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLK-----TLDLGENQISKIENGSFKNLQ 457
K F C+ L EL L SN+I +I + PF+K TLDL N +S + G+ L+
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLE 155
Query: 458 QLTDLRLVDNNIGNLSSGML--YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
L +L L +N I L S L + SL+ L LS N+I + G F RL + L+
Sbjct: 156 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 213
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 152/396 (38%), Gaps = 29/396 (7%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
SL L L+ SIR++ + S + G K +L +LDLS+N L +G
Sbjct: 220 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-----WTNLTMLDLSYNNLNVVG 274
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVA------XXXXXXXXXXXXXXVSLP---EG 258
+ S +L+ LE N I + ++ SLP +
Sbjct: 275 NDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 333
Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXX-- 316
F + + + + N + + +F L + TF+
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 393
Query: 317 XXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIH 375
++I++ F L L+ LDL N IG + + L N+ IYLS N+
Sbjct: 394 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 453
Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDS--KAFKNCSALKELDLSSNAIVEIPSALSE-L 432
+T + F + L +L L L N+DS F+ L LDLS+N I I + E L
Sbjct: 454 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 513
Query: 433 PFLKTLDLGENQISKIENGS--------FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
L+ LDL N ++++ + K L L L L N + + +L L+
Sbjct: 514 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 573
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+++L N ++ + F L ++ L N +T +
Sbjct: 574 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 609
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGL 385
++I++ F L L+ LDL N IG + + L N+ IYLS N+ +T + F +
Sbjct: 404 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 463
Query: 386 YVLSKLTLSNNLLVNIDSK--------------------------AFKNCSALKELDLSS 419
L +L L L N+DS + L+ LDL
Sbjct: 464 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 523
Query: 420 NAIVEI-----PSA----LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
N + + P L L L L+L N +I FK+L +L + L NN+
Sbjct: 524 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 583
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
L + + SL+ LNL KN I +E F
Sbjct: 584 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 99/251 (39%), Gaps = 41/251 (16%)
Query: 329 IDAKTFKDLVFLQRLDLRN----------------------------NSIGYIEDNAFLS 360
I + F L+ L+ L L N N I IE +AF
Sbjct: 354 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 413
Query: 361 LYNLHTIYLSENRI-HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
L +L + L N I +T + GL + ++ LS N + + +F +L+ L L
Sbjct: 414 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 473
Query: 420 NAIVEI---PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL---- 472
A+ + PS L L LDL N I+ I + + L++L L L NN+ L
Sbjct: 474 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 533
Query: 473 -SSGMLY---ELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYL 527
G +Y L L +LNL N +I + F+ L I L N L + VF
Sbjct: 534 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 593
Query: 528 AQLLWLNLSEN 538
L LNL +N
Sbjct: 594 VSLKSLNLQKN 604
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GLS L +L+LE+N F +L +L + L N + + FN +SL+ L L
Sbjct: 544 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 603
Query: 883 NRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
N + S + F + L ++ + NPF C+C ++ WI
Sbjct: 604 NLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWI 645
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRASAES-----NSGEKIE---CSGGMDLRILDLSHN 201
NI LNL+ N +R + F R + S N+ K+E C L++L+L HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 202 KLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
+L L D + L LHL +N I +I N FV
Sbjct: 94 ELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPFV 128
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 9/223 (4%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
++++ + + L L+ L+L++N + + D F NL ++L N I I + F
Sbjct: 72 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 131
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL---PFLKTLDLGEN 443
L L LS+N L + L+EL LS+N I + S ++ LK L+L N
Sbjct: 132 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 191
Query: 444 QISKIENGSFKNLQQLTDLRLVDNNIG-NLSSGMLYELP--SLEVLNLSKNKIHQIEIGT 500
QI + G F + +L L L + +G +L+ + EL S+ L+LS +++ T
Sbjct: 192 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 251
Query: 501 F--EKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
F K L + L N L + N F +L QL + L N++
Sbjct: 252 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
K L L L+L +N I F L+ L I L N ++ + A +FN L L L
Sbjct: 542 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 601
Query: 394 SNNLLVNIDSK----AFKNCSALKELDLSSN 420
NL+ +++ K AF+N L ELD+ N
Sbjct: 602 QKNLITSVEKKVFGPAFRN---LTELDMRFN 629
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
C+ H+ V DCS +++ VP +P + T + L N + +P F + SL
Sbjct: 12 CTVSHE------VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 65
Query: 808 VN------------------------NSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY 843
V ++++ + ++TF ++L LHL +N I
Sbjct: 66 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 125
Query: 844 EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA--FDLNTNSMLRK 901
F + L L L N + GT L +LQ L L N++++ ++ D+ NS L+K
Sbjct: 126 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 185
Query: 902 VYLGNN---PFSCSC 913
+ L +N FS C
Sbjct: 186 LELSSNQIKEFSPGC 200
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 788 TFKTIPNHVFI--GRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH-FYGYE 844
+ +T+ N F+ + L + ++I I + F+ L L+VL L N I G E
Sbjct: 376 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 435
Query: 845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
+ LE + E+YL N+ + +F + SLQ L L LK
Sbjct: 436 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 477
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-- 397
L LDL N++ + +++F L L +L N I H+ +H +GL+ + L L +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 398 -------LVNIDSKAFKNCSALKELDLSSNAIVEIPS----------------------- 427
L ID +F+ L+ L++ N I I S
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 428 -------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE- 479
+L+ P L L+L +N+ISKIE+ +F L L L L N IG +G +
Sbjct: 370 LTNETFVSLAHSP-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV---FTYLAQLLWLNLS 536
L ++ + LS NK Q+ +F L + L L +++ F L L L+LS
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY-------YEIKDGLS---IKNLDASH 584
N++ + M+ G L+ LD+ N ++ L + Y +K GLS I NL+++
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNG 547
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
+ + ++++ + N + ++ F ++ +L +++ N IT ++
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-- 605
Query: 645 PVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
P + L E + NPFDC C S+ W
Sbjct: 606 --PAFRNLTELDMRFNPFDCTCESIAWF 631
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQIS 446
++ L L++N L + + F S L LD+ N I ++ P +LP LK L+L N++S
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
++ + +F LT+L L+ N+I + + + +L L+LS N + ++GT
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+L +N + + F L ++ + N I + L L +L L L +N L +
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLK-----TLDLGENQISKIENGSFKNLQ 457
K F C+ L EL L SN+I +I + PF+K TLDL N +S + G+ L+
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 458 QLTDLRLVDNNIGNLSSGML--YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
L +L L +N I L S L + SL+ L LS N+I + G F RL + L+
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 152/396 (38%), Gaps = 29/396 (7%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
SL L L+ SIR++ + S + G K +L +LDLS+N L +G
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-----WTNLTMLDLSYNNLNVVG 264
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVA------XXXXXXXXXXXXXXVSLP---EG 258
+ S +L+ LE N I + ++ SLP +
Sbjct: 265 NDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIGXXXX-- 316
F + + + + N + + +F L + TF+
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 317 XXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIH 375
++I++ F L L+ LDL N IG + + L N+ IYLS N+
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDS--KAFKNCSALKELDLSSNAIVEIPSALSE-L 432
+T + F + L +L L L N+DS F+ L LDLS+N I I + E L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 433 PFLKTLDLGENQISKIENGS--------FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
L+ LDL N ++++ + K L L L L N + + +L L+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+++L N ++ + F L ++ L N +T +
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGL 385
++I++ F L L+ LDL N IG + + L N+ IYLS N+ +T + F +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Query: 386 YVLSKLTLSNNLLVNIDSK--------------------------AFKNCSALKELDLSS 419
L +L L L N+DS + L+ LDL
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 420 NAIVEI-----PSA----LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
N + + P L L L L+L N +I FK+L +L + L NN+
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
L + + SL+ LNL KN I +E F
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 99/251 (39%), Gaps = 41/251 (16%)
Query: 329 IDAKTFKDLVFLQRLDLRN----------------------------NSIGYIEDNAFLS 360
I + F L+ L+ L L N N I IE +AF
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 361 LYNLHTIYLSENRI-HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
L +L + L N I +T + GL + ++ LS N + + +F +L+ L L
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 420 NAIVEI---PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL---- 472
A+ + PS L L LDL N I+ I + + L++L L L NN+ L
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523
Query: 473 -SSGMLY---ELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYL 527
G +Y L L +LNL N +I + F+ L I L N L + VF
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583
Query: 528 AQLLWLNLSEN 538
L LNL +N
Sbjct: 584 VSLKSLNLQKN 594
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRASAES-----NSGEKIE---CSGGMDLRILDLSHN 201
NI LNL+ N +R + F R + S N+ K+E C L++L+L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 202 KLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
+L L D + L LHL +N I +I N FV
Sbjct: 84 ELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPFV 118
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GLS L +L+LE+N F +L +L + L N + + FN +SL+ L L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 883 NRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
N + S + F + L ++ + NPF C+C ++ WI
Sbjct: 594 NLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWI 635
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 9/223 (4%)
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
++++ + + L L+ L+L++N + + D F NL ++L N I I + F
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL---PFLKTLDLGEN 443
L L LS+N L + L+EL LS+N I + S ++ LK L+L N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 444 QISKIENGSFKNLQQLTDLRLVDNNIG-NLSSGMLYELP--SLEVLNLSKNKIHQIEIGT 500
QI + G F + +L L L + +G +L+ + EL S+ L+LS +++ T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 501 F--EKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
F K L + L N L + N F +L QL + L N++
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
K L L L+L +N I F L+ L I L N ++ + A +FN L L L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591
Query: 394 SNNLLVNIDSK----AFKNCSALKELDLSSN 420
NL+ +++ K AF+N L ELD+ N
Sbjct: 592 QKNLITSVEKKVFGPAFRN---LTELDMRFN 619
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 144/683 (21%), Positives = 265/683 (38%), Gaps = 117/683 (17%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXX 251
++ +L+L+HN+LR L + T++ +L +L + N IS++ P
Sbjct: 26 NITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 252 XVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFI 311
L + F+ C +++E++ NS+ ++ F K + + T
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-----LSSTKLG 139
Query: 312 GXXXXXXXXXXXXXXTRIDAKTFKDL-VF----LQRLDLRNNSIGYIEDNAFLSLYNLHT 366
+I A ++L +F L++L+L +N I F ++ L
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
++L+ ++ +L+ L + + + + +N S SN+ +
Sbjct: 200 LFLNNVQLGP---------------SLTEKLCLELANTSIRNLSL-------SNSQLSTT 237
Query: 427 SALSELPF----LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS 482
S + L L LDL N ++ + N SF L QL L NNI +L S L+ L +
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 483 LEVLNLSKNKIHQ-IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541
+ LNL ++ Q I + + K + F +L L LN+ +N +
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFS---------------FQWLKCLEHLNMEDNDIP 342
Query: 542 WFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV 599
M G NLK+L SL+N + S++ L L S L I N
Sbjct: 343 GIKSNMFTGLINLKYL--------SLSNSFT-----SLRTLTNETFVSLAHSPLHILN-- 387
Query: 600 EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGG 659
+ N I ++ F +L +D+ N+I + +LT + + + + E YL
Sbjct: 388 ----LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ-ELTGQEWRGL---ENIFEIYLSY 439
Query: 660 NPFDCDCSMDWLPIINNNTS--PSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQ 717
N +L + N+ + PS++R + + L NV +++PS
Sbjct: 440 N--------KYLQLTRNSFALVPSLQRLMLRRVALKNV----------------DSSPSP 475
Query: 718 YLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPM 777
+ ++ L + + D + + Q+ N+ + P
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLK 533
Query: 778 DATHVY---LDGNTFKTIPNHVF--IGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHL 832
+H++ L+ N F IP VF + ++ L +NN + + FN SL+ L+L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN--LNTLPASVFNNQVSLKSLNL 591
Query: 833 ENNLIT----HFYGYEFDNLEKL 851
+ NLIT +G F NL +L
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTEL 614
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
C+ H+ V DCS +++ VP +P + T + L N + +P F + SL
Sbjct: 2 CTVSHE------VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 808 VN------------------------NSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY 843
V ++++ + ++TF ++L LHL +N I
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115
Query: 844 EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA--FDLNTNSMLRK 901
F + L L L N + GT L +LQ L L N++++ ++ D+ NS L+K
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175
Query: 902 VYLGNN---PFSCSC 913
+ L +N FS C
Sbjct: 176 LELSSNQIKEFSPGC 190
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 788 TFKTIPNHVFI--GRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH-FYGYE 844
+ +T+ N F+ + L + ++I I + F+ L L+VL L N I G E
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
+ LE + E+YL N+ + +F + SLQ L L LK
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L KL L
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 400 NIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
++++ + LKEL+++ N I ++P S L L+ LDL N+I I + L
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197
Query: 458 QL 459
Q+
Sbjct: 198 QM 199
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
VF+ +N++ L ++++ V N FNGLSSL+VL + N+ +F F L L+ L
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNR-----------LKSFRAFDLNTN------- 896
L + ++E ++ FN+L SLQVL + N L S + D + N
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 897 -------SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI--DESSPPI 947
S L + L N F+C+C LQ WI D + + + C D+ P+
Sbjct: 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ-WIKDQRQLLVEVERMECATPSDKQGMPV 618
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + F+ L
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 175 LEHLDLSSNKI 185
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 27/166 (16%)
Query: 331 AKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
+ F L L+ LD +++++ + E + FLSL NL IYL + H A FNG+
Sbjct: 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISHTHTRVA--FNGI---- 464
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE--IPSALSELPFLKTLDLGENQISK 447
F S+L+ L ++ N+ E +P +EL L LDL + Q+ +
Sbjct: 465 ----------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
+ +F +L L L + NN +L + L SL+VL+ S N I
Sbjct: 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 578 KNLDASHNRILEI 590
++LD S N+I I
Sbjct: 176 EHLDLSSNKIQSI 188
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 334 FKDLVFLQRLDLRNNSI--GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL 391
F L L+ L + NS ++ D F L NL + LS+ ++ ++ FN L L L
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQIS 446
+S+N ++D+ +K ++L+ LD S N I+ E+ S L F L+L +N +
Sbjct: 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFA 580
Query: 447 -KIENGSFKNLQQLTDLR 463
E+ SF LQ + D R
Sbjct: 581 CTCEHQSF--LQWIKDQR 596
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
N+++ + E + VP + T+ ++ N +K IP+++ KN L L N + +
Sbjct: 17 NSSIPESWEPCVEVVP-----NITYQCMELNFYK-IPDNLPFSTKN-LDLSFN--PLRHL 67
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
+ +F LQVL L I + +L LS L L N I+ +A G F+ L SLQ
Sbjct: 68 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127
Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
L L S F + L+++ + +N
Sbjct: 128 KLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIEYI 864
N L +L+ L++ +NLI F E F NL L L L N+I+ I
Sbjct: 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 790 KTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQ-VLHLENNLITHFYGYEFDNL 848
+TI + + ++ +L + + I+ + F+GLSSLQ ++ +E NL + + +L
Sbjct: 89 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHL 147
Query: 849 EKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKSFRAFDL 893
+ L EL + N I+ + F+ L +L+ L L N+++S DL
Sbjct: 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 170 SNLTNLEHLDLSSNKIQSI 188
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 90 VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSL 149
+F+GL +L+ L + + Q + +P LR L L F SL
Sbjct: 464 IFNGLSSLEVLKMAGNSFQEN------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 150 ANIQTLNLSRNSIRDIDTLGF 170
+++Q LN+S N+ +DT +
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPY 538
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 43/198 (21%)
Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI------HQIEIGTFEKNKRLAA 509
L+ L L N GN S + +LPSLE L+LS+N + Q + GT ++
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGT------ISL 399
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
LD +F NGV T + L L L+ LD S+L
Sbjct: 400 KYLDLSF----NGVITMSSNFLGLE----------------QLEHLDFQH---SNLKQMS 436
Query: 570 EIKDGLSIKNL-----DASHNRILEISELSIPNSVEVL-FINNNLIKSVKPHTFFDKSNL 623
E LS++NL +H R+ + +S+EVL N+ ++ P F + NL
Sbjct: 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 624 ARVDIYANDITKLDLTAL 641
+D+ + +L TA
Sbjct: 497 TFLDLSQCQLEQLSPTAF 514
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
LQ LDL I IED A+ SL +L T+ L+ N I + F+GL L KL L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 400 NIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
++++ + LKEL+++ N I ++P S L L+ LDL N+I I + L
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 458 QL 459
Q+
Sbjct: 174 QM 175
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
VF+ +N++ L ++++ V N FNGLSSL+VL + N+ +F F L L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNR-----------LKSFRAFDLNTN------- 896
L + ++E ++ FN+L SLQVL + N L S + D + N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 897 -------SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI--DESSPPI 947
S L + L N F+C+C LQ WI D + + + C D+ P+
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ-WIKDQRQLLVEVERMECATPSDKQGMPV 594
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
K LDLS N + + S + P L+ LDL +I IE+G++++L L+ L L N I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQ 529
L+ G L SL+ L + + +E K L + + N + F+ L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 530 LLWLNLSENHL 540
L L+LS N +
Sbjct: 151 LEHLDLSSNKI 161
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 27/166 (16%)
Query: 331 AKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
+ F L L+ LD +++++ + E + FLSL NL IYL + H A FNG+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISHTHTRVA--FNGI---- 440
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE--IPSALSELPFLKTLDLGENQISK 447
F S+L+ L ++ N+ E +P +EL L LDL + Q+ +
Sbjct: 441 ----------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
+ +F +L L L + NN +L + L SL+VL+ S N I
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
+L L N + +L S + P L+VL+LS+ +I IE G ++ L+ + L N + +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 521 N-GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
G F+ L+ L L E +L + + LK L++ N I S + ++
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 578 KNLDASHNRILEI 590
++LD S N+I I
Sbjct: 152 EHLDLSSNKIQSI 164
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 334 FKDLVFLQRLDLRNNSI--GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL 391
F L L+ L + NS ++ D F L NL + LS+ ++ ++ FN L L L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQIS 446
+S+N ++D+ +K ++L+ LD S N I+ E+ S L F L+L +N +
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFA 556
Query: 447 -KIENGSFKNLQQLTDLR 463
E+ SF LQ + D R
Sbjct: 557 CTCEHQSF--LQWIKDQR 572
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V+D S +I T+ +H+ L GN +++ F G ++ L + + +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIEYI 864
N L +L+ L++ +NLI F E F NL L L L N+I+ I
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
F IP+++ KN L L N + + + +F LQVL L I + +L
Sbjct: 19 FYKIPDNLPFSTKN-LDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
LS L L N I+ +A G F+ L SLQ L L S F + L+++ + +N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSR 159
L +T+NL + L S ELQVL D + SL+++ TL L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 160 NSIRDIDTLGFA-----VRRASAESN--SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
N I+ + F+ + + E+N S E L+ L+++HN +++
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 213 TKFRRLQNLHLENNEISQI 231
+ L++L L +N+I I
Sbjct: 146 SNLTNLEHLDLSSNKIQSI 164
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 790 KTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQ-VLHLENNLITHFYGYEFDNL 848
+TI + + ++ +L + + I+ + F+GLSSLQ ++ +E NL + + +L
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHL 123
Query: 849 EKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKSFRAFDL 893
+ L EL + N I+ + F+ L +L+ L L N+++S DL
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 90 VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSL 149
+F+GL +L+ L + + Q + +P LR L L F SL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQEN------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 150 ANIQTLNLSRNSIRDIDTLGF 170
+++Q LN+S N+ +DT +
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPY 514
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
VF+ +N++ L ++++ V N FNGLSSL+VL + N+ +F F L L+ L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNR-----------LKSFRAFDLNTN------- 896
L + ++E ++ FN+L SLQVL + N L S + D + N
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 897 -------SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI--DESSPPI 947
S L + L N F+C+C LQ WI D + + + C D+ P+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ-WIKDQRQLLVEVERMECATPSDKQGMPV 299
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 31/244 (12%)
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXIDETTFIG 312
S+P G+ SS + + + N L L G+F KL Q + G
Sbjct: 20 TSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 313 XXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSE 371
+ + F L L+ LD +++++ + E + FLSL NL IYL
Sbjct: 77 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDI 133
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE--IPSAL 429
+ H A FNG+ F S+L+ L ++ N+ E +P
Sbjct: 134 SHTHTRVA--FNGI--------------------FNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
+EL L LDL + Q+ ++ +F +L L L + NN +L + L SL+VL+ S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231
Query: 490 KNKI 493
N I
Sbjct: 232 LNHI 235
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 334 FKDLVFLQRLDLRNNSI--GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL 391
F L L+ L + NS ++ D F L NL + LS+ ++ ++ FN L L L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQIS 446
+S+N ++D+ +K ++L+ LD S N I+ E+ S L F L+L +N +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFA 261
Query: 447 -KIENGSFKNLQQLTDLR 463
E+ SF LQ + D R
Sbjct: 262 CTCEHQSF--LQWIKDQR 277
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY----LAQLLWLNLSENHLV 541
L L NK+ + G F+K +L + L SN L+ G + L +L+LS N ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 542 WFDYAMVP-GNLKWLDIHGNYISSLNNYYEIKDGLSIKNL-----DASHNRILEISELSI 595
+ L+ LD S+L E LS++NL +H R+ +
Sbjct: 92 TMSSNFLGLEQLEHLDFQH---SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 596 PNSVEVL-FINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
+S+EVL N+ ++ P F + NL +D+ + +L TA
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 130/329 (39%), Gaps = 35/329 (10%)
Query: 377 ITAHLFNGLYVLS--KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF 434
I+ +F GL +S + L + NI S F S L+ELDL++ + E+PS L L
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST 302
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG-NLSSGMLYELPSLEVLNLSKNKI 493
LK L L N+ + S N LT L + N L +G L L +L L+LS + I
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 494 HQIEIGTFEKN--KRLAAIRLDSNF-LTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
+ + L ++ L N L+ F QL L+L+ L D
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
Query: 551 NLKWLDI----HGNYISSLNNYYEIKDGLSIKNLDASH---NRILEISELSIPNSVEVLF 603
NL L + H S ++ L NL +H I + + L +E+L
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 604 INNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL-RLKPVPQNKT-------LPEF 655
++ + S+ H F + VD+ N +T + AL LK + N LP
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542
Query: 656 Y----------LGGNPFDCDCS----MDW 670
L NP DC CS ++W
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNIYFLEW 571
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 145/350 (41%), Gaps = 42/350 (12%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I TF L+ L LDL I +I ++ F S + L T+ L+ N + + +G L
Sbjct: 48 IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
L + +ID N L+ L L SN I +++P LK LD N I
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIH 166
Query: 447 KIENGSFKNLQQLTD--LRLVDNNIGNLSSGMLYELPSLEVLN-------------LSKN 491
+ +LQQ T+ L L N+I + G ++ + LN L +
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-FDSAVFQSLNFGGTQNLLVIFKGLKNS 225
Query: 492 KIHQIEIGTFE--KNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
I + +GTFE ++ ++ + L +++ L + + N+S N F
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEG--LCEMSVESINLQKHYFFNISSNTFHCF------ 277
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHNRILEISELSIPN--SVEVLF 603
L+ LD+ ++S E+ GL ++K L S N+ + ++S N S+ L
Sbjct: 278 SGLQELDLTATHLS------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 604 INNNLIK-SVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
I N + + + NL +D+ +DI D L+L+ + ++L
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 144/655 (21%), Positives = 249/655 (38%), Gaps = 130/655 (19%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L+ N + I++ F L NL + L+ +I+ I F + L L L+ N L+ +
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL 462
A P AL L F++T IS I+ N + L L
Sbjct: 98 ETALSG-----------------PKALKHLFFIQT------GISSIDFIPLHNQKTLESL 134
Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI---EIGTFEKNKRLAAIRLDSNFLTD 519
L N+I ++ + L+VL+ N IH + ++ + ++ L+ + L+ N +
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAG 193
Query: 520 IN-GVF-TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSI 577
I G F + + Q L ++N LV F LK I ++ + +E D I
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFK------GLKNSTIQSLWLGT----FEDMDDEDI 243
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
A + E+S SI +++ H FF+ S + + + +LD
Sbjct: 244 S--PAVFEGLCEMSVESI---------------NLQKHYFFNIS--SNTFHCFSGLQELD 284
Query: 638 LTALRLKPVPQN----KTLPEFYLGGNPFD--CDCSMDWLPIINN----NTSPSMERQYP 687
LTA L +P TL + L N F+ C S P + + + +E
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 688 KIMDLDNV--------------VCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCC 733
+ +L+N+ C + R +HL + + Y P + A C
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLS---YNEPLSLKTEAFKECP 400
Query: 734 EFDACDCEMTCPK---------NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYL 784
+ + D T K N N + +++D S +Q+ P + H+ L
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL----QHLNL 456
Query: 785 DGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYE 844
GN F I + N L QT L L++L L ++ +
Sbjct: 457 QGNHFPKGN----IQKTNSL--------------QT---LGRLEILVLSFCDLSSIDQHA 495
Query: 845 FDNLEKLSELYLQENRIEYIANGTFNALISLQ--VLQLDGNRLKSFRAFDLNTNSMLRKV 902
F +L+ ++ + L NR+ + + AL L+ L L N + L S R +
Sbjct: 496 FTSLKMMNHVDLSHNRL---TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTI 552
Query: 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTT 957
L NP C+C+ + L+ W +N K++D D C +PP+ + + L+ T
Sbjct: 553 NLRQNPLDCTCSNIYFLE-WYKENMQKLEDTEDTLC----ENPPLLRGVRLSDVT 602
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 332 KTFKDLVFLQRLDLRNNSI--GYIED-NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ F L LQ L+L+ N G I+ N+ +L L + LS + I H F L ++
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI-VEIPSALSELPFLKTLDLGENQI 445
+ + LS+N L + +A + + L+L+SN I + +PS L L +T++L +N +
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI---LNQTFNGLSSLQVLHLENNL 836
T + + NTF +P+ K M L ++++ I V+ + QT L+VL + NN
Sbjct: 416 TSLDISRNTFHPMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT------LEVLDVSNNN 468
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN 896
+ F + L +L ELY+ N+++ + + + + L V+++ N+LKS +
Sbjct: 469 LDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRL 522
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
+ L+K++L NP+ CSC + L W+ NS K + S S P+R I
Sbjct: 523 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 573
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 24/240 (10%)
Query: 397 LLVNIDSKAFKNCSALKEL--------DLSSNAIVEIPSALSELPFLKTLDLGENQISKI 448
+LV I K CSA + L D S + IPS L+ +K+LDL N+I+ I
Sbjct: 10 ILVAITVLFSKRCSAQESLSCDASGVCDGRSRSFTSIPSGLTAA--MKSLDLSFNKITYI 67
Query: 449 ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLA 508
+G + L L L + I + Y L SLE L+LS N + + F L
Sbjct: 68 GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 127
Query: 509 AIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
+ L N + GV + L+ NL+ + ++ +D G ++SLN
Sbjct: 128 YLNLMGNPYQTL-GVTS-----LFPNLTNLQTLRIGNVETFSEIRRIDFAG--LTSLNE- 178
Query: 569 YEIKDGLSIKNLDA-SHNRILEISELS--IPNSVEVLFINNNLIKSVKPHTFFDKSNLAR 625
EIK LS++N + S I +I L+ + S +L I +++ SV+ D +NLAR
Sbjct: 179 LEIK-ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNLAR 236
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 177/403 (43%), Gaps = 87/403 (21%)
Query: 330 DAKTFKDLVFLQRLDLRN-NSIGYIEDNAFLSLYNLHTIYLSENR-IHHITAHLFNGLYV 387
+ +TF ++ +R+D S+ +E A LSL N + L R IHH+T HL ++
Sbjct: 158 NVETFSEI---RRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFL 213
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL--DLGENQI 445
L ++L ++ ++ + L S + E+ S + +L F ++ D N++
Sbjct: 214 LEIFA---DILSSVRYLELRD-TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 269
Query: 446 SKIENGSFKNLQQLTDLRLVD---NNIGNLS---SGMLYELPSLEVLNLSKNKIHQIEI- 498
K+ + + +L+++ D N +G+ + S ++ EL +E + + + I Q +
Sbjct: 270 LKL----LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 325
Query: 499 -------GTFEKNKRLAAIRLDSNFLTDINGVFT-YLAQLLWLNLSENHLV--WFDYAMV 548
EK KR I ++++ + + F+ +L L +L+LSEN +V + +
Sbjct: 326 YDLSTVYSLLEKVKR---ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 382
Query: 549 PG---NLKWLDIHGNYISSLNNYYEIKDGLSIKNL---DASHN---------------RI 587
G +L+ L + N++ S+ EI L++KNL D S N R
Sbjct: 383 KGAWPSLQTLVLSQNHLRSMQKTGEIL--LTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 440
Query: 588 LEIS-------ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTA 640
L +S + IP ++EVL ++NN + S F + L + I N + L +
Sbjct: 441 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPR--LQELYISRNKLKTLPDAS 496
Query: 641 L------------RLKPVPQN-----KTLPEFYLGGNPFDCDC 666
L +LK VP +L + +L NP+DC C
Sbjct: 497 LFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 539
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
LQ L L+++ I IE +AF SL +L + LS+N + +++ F L L L L N
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 400 NID-SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+ + F N + L+ L + + VE S + + F L E +I + ++++ Q
Sbjct: 138 TLGVTSLFPNLTNLQTLRIGN---VETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QS 193
Query: 459 LTDLR 463
L +R
Sbjct: 194 LKSIR 198
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI---LNQTFNGLSSLQVLHLENNL 836
T + + NTF +P+ K M L ++++ I V+ + QT L+VL + NN
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT------LEVLDVSNNN 442
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN 896
+ F + L +L ELY+ N+++ + + + + L V+++ N+LKS +
Sbjct: 443 LDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRL 496
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
+ L+K++L NP+ CSC + L W+ NS K + S S P+R I
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 547
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+C A D S + IPS L+ +K+LDL N+I+ I +G + L L L +
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
I + Y L SLE L+LS N + + F L + L N + GV +
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-GVTS-- 117
Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDA-SHNR 586
L+ NL+ + ++ +D G ++SLN EIK LS++N + S
Sbjct: 118 ---LFPNLTNLQTLRIGNVETFSEIRRIDFAG--LTSLNE-LEIK-ALSLRNYQSQSLKS 170
Query: 587 ILEISELS--IPNSVEVLFINNNLIKSVKPHTFFDKSNLAR 625
I +I L+ + S +L I +++ SV+ D +NLAR
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNLAR 210
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 177/408 (43%), Gaps = 86/408 (21%)
Query: 330 DAKTFKDLVFLQRLDLRN-NSIGYIEDNAFLSLYNLHTIYLSENR-IHHITAHLFNGLYV 387
+ +TF ++ +R+D S+ +E A LSL N + L R IHH+T HL ++
Sbjct: 132 NVETFSEI---RRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL--DLGENQI 445
L ++L ++ ++ + L S + E+ S + +L F ++ D N++
Sbjct: 188 LEIFA---DILSSVRYLELRD-TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 446 SKIENGSFKNLQQLTDLRLVD---NNIGNLS---SGMLYELPSLEVLNLSKNKIHQIEI- 498
K+ + + +L+++ D N +G+ + S ++ EL +E + + + I Q +
Sbjct: 244 LKL----LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299
Query: 499 -------GTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV--WFDYAMVP 549
EK KR+ + FL + +L L +L+LSEN +V + +
Sbjct: 300 YDLSTVYSLLEKVKRIT-VENSKVFLVPCS-FSQHLKSLEFLDLSENLMVEEYLKNSACK 357
Query: 550 G---NLKWLDIHGNYISSLNNYYEIKDGLSIKNL---DASHN---------------RIL 588
G +L+ L + N++ S+ EI L++KNL D S N R L
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEIL--LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415
Query: 589 EIS-------ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
+S + IP ++EVL ++NN + S F + L + I N + L +L
Sbjct: 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPR--LQELYISRNKLKTLPDASL 471
Query: 642 ------------RLKPVPQN-----KTLPEFYLGGNPFDCDC-SMDWL 671
+LK VP +L + +L NP+DC C +D+L
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
LQ L L+++ I IE +AF SL +L + LS+N + +++ F L L L L N
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 400 NID-SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+ + F N + L+ L + + VE S + + F L E +I + ++++ Q
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGN---VETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QS 167
Query: 459 LTDLR 463
L +R
Sbjct: 168 LKSIR 172
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 151/673 (22%), Positives = 238/673 (35%), Gaps = 170/673 (25%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
I TF L+ L LDL I ++ ++ F S + L+TI L+ N + + G L
Sbjct: 47 IQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFL 106
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
L L+ + N++ N L+ L L SN I + +P LK LD N I
Sbjct: 107 KHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIH 165
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
I +L+Q T+L L N + N I IE G F +K
Sbjct: 166 YISRKDTNSLEQATNLSL----------------------NFNGNDIKGIEPGAF-ISKI 202
Query: 507 LAAIRLDS--NFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISS 564
+++ N G+ Q LWL E D Y++S
Sbjct: 203 FQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFE------------------DTDDQYLTS 244
Query: 565 LNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLA 624
A+ + ++S SI +++ H F D S+ +
Sbjct: 245 -----------------ATFEGLCDMSVESI---------------NLQKHRFSDLSS-S 271
Query: 625 RVDIYANDITKLDLTALRLKPVPQN----KTLPEFYLGGNPFDCDCSMDWLPIINNNTSP 680
+ + +LDLTA L +P +L + L N FD C IN + P
Sbjct: 272 TFRCFTR-VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQ------INAASFP 324
Query: 681 SMERQYPK----IMDLDNVVCKMTYSRGSTHLPASEAAPS-------------QYLC--- 720
S+ Y K +DL + + L S+ S QYL
Sbjct: 325 SLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSY 384
Query: 721 --PYDIHCFALCHCCEFDACDCEMT-----CP----KNCSCFHDQNWNTNVVDCSEQQIS 769
P + A C + + D T P +N N + ++D S Q +
Sbjct: 385 NEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLL 444
Query: 770 TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLS-------LYVNNSQIEVILNQTFN 822
D H+ L GN+F+ I + N+L L +++ + I Q F+
Sbjct: 445 AGL----QDLRHLNLQGNSFQDGS----ISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ--ENRIEYIANGTFNALISLQVLQL 880
GL ++ L L +N +T G D L L LYL N I I AL
Sbjct: 497 GLRNVNHLDLSHNSLT---GDSMDALSHLKGLYLNMASNNIRIIPPHLLPAL-------- 545
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI 940
S + L +NP C+C+ + + TW +N +K++D + +C
Sbjct: 546 ----------------SQQSIINLSHNPLDCTCSNIHFI-TWYKENLHKLEDSEETTC-- 586
Query: 941 DESSPPIRKEIDL 953
++PP + + L
Sbjct: 587 --ANPPSLRGVKL 597
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 59 DSSIT-TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
D SI+ T Q + SLE L +S+C L+ + F GLRN+ L ++ +L D L
Sbjct: 462 DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSH 521
Query: 118 VPG 120
+ G
Sbjct: 522 LKG 524
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 51 DCDATVLLDSSITT-------KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTIN 103
+C LLD + T FQN++ L L +S+C L + +GL++L+ L +
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQ 456
Query: 104 TRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSI 162
+ Q K +L L + L++L F L N+ L+LS NS+
Sbjct: 457 GNSFQDGSISKTNL----LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 131/556 (23%), Positives = 216/556 (38%), Gaps = 95/556 (17%)
Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
+D S+ + +P L P K L L +N IS++ L +L LRL N I +L
Sbjct: 36 VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93
Query: 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIR-LDSNF----LTDINGVFTYLAQ 529
+ LE L++S N++ I +A++R LD +F + + F L +
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQNISCCP------MASLRHLDLSFNDFDVLPVCKEFGNLTK 147
Query: 530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE 589
L +L LS D V +L I + +S Y IK G E
Sbjct: 148 LTFLGLSAAKFRQLDLLPV-AHLHLSCILLDLVS-----YHIKGG--------------E 187
Query: 590 ISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL------ 643
L IPN+ + + P++ F +V++ N + L L+ ++L
Sbjct: 188 TESLQIPNTTVLHLV-------FHPNSLFS----VQVNMSVNALGHLQLSNIKLNDENCQ 236
Query: 644 ------KPVPQNKTLPEFYLGGNPFDCDCSM-----------DWLPIINNNTSPSMERQY 686
+ + TL L CS+ ++L I N + ++R+
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296
Query: 687 PKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPK 746
+ + + + L + EA S + +I ++ D M CP
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSIS-----DTPFIHMVCPP 350
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806
+ S F N+ NV S Q + R+ N FK V + KNM SL
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-----VALMTKNMSSL 405
Query: 807 YVNNSQIEVILN--------QTFNGLSSLQVLHLENNLITHFYGYEFDNLE-KLSELYLQ 857
++V LN +T S+ VL+L +N++T G F L K+ L L
Sbjct: 406 ----ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLH 458
Query: 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQ 917
NRI I L +LQ L + N+LKS + + L+ ++L +NP+ C+C ++
Sbjct: 459 NNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
Query: 918 ELQTWIIDNSNKVKDG 933
L WI +S V++
Sbjct: 518 YLSEWINKHSGVVRNS 533
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 333 TFKDLVF--------LQRLDLRNNSIGYIEDNAFLS--LYNLHTIYLSENRIHHITAHLF 382
F D VF LQ L L+ N + A ++ + +L T+ +S N ++ +H +
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN---SHAY 420
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNC--SALKELDLSSNAIVEIPSALSELPFLKTLDL 440
+ ++ L NL N+ + + C +K LDL +N I+ IP ++ L L+ L++
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480
Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
NQ+ + +G F L L + L DN G+ Y
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 341 QRLDLRNNSIGYIE--DNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
+ L L NSI + D +FLS L + LS NRI + H+F L L +S+N L
Sbjct: 55 KALSLSQNSISELRMPDISFLS--ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 399 VNIDSKAFKNCSALKELDLSSNAIVEIPSA-----LSELPFL 435
NI ++L+ LDLS N +P L++L FL
Sbjct: 113 QNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
++ LDL NN I YI ++ NL + L+ N I+ I F+ L L L LS N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI--PSALSELPFLKTLDLGE-NQISKIENGSFKNL 456
N+ S FK S+L L+L N + S S L L+ L +G + +KI+ F L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 457 QQLTDLRL 464
L +L +
Sbjct: 174 TFLEELEI 181
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 117/273 (42%), Gaps = 25/273 (9%)
Query: 411 ALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
A+K LDLS+N I I S L L+ L L N I+ IE SF +L L L L N +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQI-EIGTFEKNKRLAAIRLDS--NFLTDINGVFTY 526
NLSS L SL LNL N + E F +L +R+ + F F
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 527 LAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIH-GNYISSLNNYYEIKDGLSIKNLDAS 583
L L L + + L ++ + N+ L +H +I L + ++ + L +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 584 HNRILEISELSIPNSVEVLFINNNLIK--SVKPHTFFDKSNLARVDIYANDIT---KLDL 638
SELS + N+LIK + + D+S L +V N I+ +L+
Sbjct: 233 DLDTFHFSELSTGET-------NSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEF 284
Query: 639 TALRLKPVPQN-----KTLPEFYLGGNPFDCDC 666
+ +LK VP +L + +L NP+DC C
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 869 FNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSN 928
N + L L+ N+LKS + + L+K++L NP+ CSC + L W+ NS
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 332
Query: 929 KVKDGLDISCVIDESSPPIRKEI 951
K + S S P+R I
Sbjct: 333 KEQGSAKCS----GSGKPVRSII 351
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 817 LNQTFNGLS-SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875
LN +GL+ +++ L L NN IT+ + L L L N I I +F++L SL
Sbjct: 43 LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
+ L L N L + + S L + L NP+
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
Length = 146
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
+D +V +V ELE+ NP ++LCLH RD ++ +I++ E S + + VL
Sbjct: 12 RDAYWVENLMVQELENFNPPFKLCLHKRD------FIPGKWIIDNIIDSIEKSHKTVFVL 65
Query: 1096 TKNFLQTEWSRSD 1108
++NF+++EWS+ +
Sbjct: 66 SENFVKSEWSKYE 78
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
++ LDL NN I YI ++ NL + L+ N I+ I F+ L L L LS N L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI--PSALSELPFLKTLDLGE-NQISKIENGSFKNL 456
N+ S FK S+L L+L N + S S L L+ L +G + +KI+ F L
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 457 QQLTDLRL 464
L +L +
Sbjct: 148 TFLEELEI 155
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
+L ELY+ N++ + + + L L VL++ N+LKS + + L+K++L NP+
Sbjct: 452 QLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 910 SCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
CSC + L W+ NS K + S S P+R I
Sbjct: 510 DCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 547
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 411 ALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
A+K LDLS+N I I S L L+ L L N I+ IE SF +L L L L N +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQI-EIGTFEKNKRLAAIRL 512
NLSS L SL LNL N + E F +L +R+
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 418 SSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
SS ++ IPS L+E +K+LDL N+I+ I N + L L L N I +
Sbjct: 13 SSGSLNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 478 YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQL 530
L SLE L+LS N + + F+ L + L N + +F++L +L
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 817 LNQTFNGLS-SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875
LN +GL+ +++ L L NN IT+ + L L L N I I +F++L SL
Sbjct: 17 LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
+ L L N L + + S L + L NP+
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ-------------- 457
L +D+S N+ +P +K L+L +I + K L+
Sbjct: 389 LTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSL 448
Query: 458 ---QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDS 514
QL +L + N + L L LP L VL +S+N++ + G F++ L I L +
Sbjct: 449 NLPQLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHT 506
Query: 515 N 515
N
Sbjct: 507 N 507
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
+D +V +V ELE+ NP ++L LH RD H + +I++ E S + + VL
Sbjct: 15 RDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDN------IIDSIEKSHKTVFVL 68
Query: 1096 TKNFLQTEWSR 1106
++NF+++EW +
Sbjct: 69 SENFVKSEWXK 79
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 150/326 (46%), Gaps = 54/326 (16%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
D T ++L + +L + + I+ +L+ NL + L+ N+I I+ + L L+
Sbjct: 36 DVVTQEELESITKLVVAGEKVASIQGIEYLT--NLEYLNLNGNQITDISP--LSNLVKLT 91
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ----I 445
L + N + +I A +N + L+EL L+ + I +I S L+ L +L+LG N +
Sbjct: 92 NLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SPLANLTKXYSLNLGANHNLSDL 148
Query: 446 SKIENGSFKNLQQLTDLRLVD-NNIGNLSSGMLYEL-------------PSLEVLNLSKN 491
S + N + N +T+ ++ D I NL+ LY L SL L+
Sbjct: 149 SPLSNXTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNYNQIEDISPLASLTSLHYFTA 206
Query: 492 KIHQI-EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
++QI +I RL ++++ +N +TD++ + NLS+
Sbjct: 207 YVNQITDITPVANXTRLNSLKIGNNKITDLSPLA---------NLSQ------------- 244
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
L WL+I N IS +N +KD +K L+ N+I +IS L+ + + LF+NNN +
Sbjct: 245 -LTWLEIGTNQISDIN---AVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLG 300
Query: 611 SVKPHTFFDKSNLARVDIYANDITKL 636
+ +NL + + N IT +
Sbjct: 301 NEDXEVIGGLTNLTTLFLSQNHITDI 326
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 763 CSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
C +Q++S VP IP ++ L N K + ++ F + L ++ +IE I ++ ++
Sbjct: 13 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 72
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GL L L L N I F F L L L E ++ + + LI+L+ L +
Sbjct: 73 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 132
Query: 883 NRLKS 887
N + S
Sbjct: 133 NFIHS 137
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENG 451
LS N L + S +F N S L+ LDLS I I A L L L L N I G
Sbjct: 34 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 93
Query: 452 SFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKN-KRLAAI 510
SF L L +L V+ + +L S + +L +L+ LN++ N IH ++ + N L +
Sbjct: 94 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 153
Query: 511 RLDSNFLTDI 520
L N++ I
Sbjct: 154 DLSYNYIQTI 163
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F + LQ LDL I IED A+ L++L + L+ N I + F+GL L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
L L +++S LK+L+++ N I ++P+ S L L +DL N I
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Query: 447 KI 448
I
Sbjct: 162 TI 163
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 44/245 (17%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNC--------SALKELDLSSNAIVEIPSALSELPFLKTLD 439
LS L LS N L +F C ++L+ LDLS N + + + L L+ LD
Sbjct: 347 LSYLDLSRNAL------SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 400
Query: 440 LGENQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498
+ + ++ E +F +L++L L + N G+ L SL L ++ N +
Sbjct: 401 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 460
Query: 499 G-TFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLD 556
F L + L L I+ GVF L +L LN+S N+L++ D +
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS---------- 510
Query: 557 IHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE---LSIPNSVEVLFINNNLIKSVK 613
H N + SL+ LD S NRI E S+ P S+ + NN + +
Sbjct: 511 -HYNQLYSLS------------TLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSVACIC 556
Query: 614 PHTFF 618
H F
Sbjct: 557 EHQKF 561
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
I + F L LQ LD +++++ + E +AFLSL L + +S +F GL
Sbjct: 385 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 444
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
L+ L ++ N +FK+ N + + + + L FL DL + Q+ +
Sbjct: 445 LNTLKMAGN--------SFKD-----------NTLSNVFANTTNLTFL---DLSKCQLEQ 482
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
I G F L +L L + NN+ L S +L SL L+ S N+I
Sbjct: 483 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 796 VFIGRKNMLSL-YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL 854
+F+G ++ +L NS + L+ F ++L L L + FD L +L L
Sbjct: 438 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 497
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
+ N + ++ + +N L SL L NR+++ + + L L NN +C C
Sbjct: 498 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 557
Query: 915 TLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKE----IDLNSTTC 958
+ LQ W+ + + + ++C + P+ +D N++TC
Sbjct: 558 HQKFLQ-WVKEQKQFLVNVEQMTC-----ATPVEMNTSLVLDFNNSTC 599
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 327 TRIDAK-TFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG 384
T+ID F L L L + NS N F + NL + LS+ ++ I+ +F+
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 490
Query: 385 LYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELP 433
L+ L L +S+N L+ +DS + +L LD S N I L P
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 539
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 20 ISVTCNLNYLGKGGGSNLSFVPTDLITKL-NIDCDATVLLDSSITTKSFQNIYSLEELKI 78
I V N+ Y + LS VP D+ + NID L + + SF N L+ L +
Sbjct: 3 IEVVPNITY--QCMDQKLSKVPDDIPSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDL 58
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXX 138
S C++ + + GL +L L + +Q PGS GL L+ L
Sbjct: 59 SRCEIETIEDKAWHGLHHLSNLILTGNPIQ-------SFSPGSFSGLTSLENLVAVETKL 111
Query: 139 XXXXDDVFCSLANIQTLNLSRNSIR 163
L ++ LN++ N I
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIH 136
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIEYIANGTFNALI 873
+I++ F GL LQ L +++ + + F +LEKL L + + +G F L
Sbjct: 384 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 443
Query: 874 SLQVLQLDGNRLK 886
SL L++ GN K
Sbjct: 444 SLNTLKMAGNSFK 456
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 763 CSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
C +Q++S VP IP ++ L N K + ++ F + L ++ +IE I ++ ++
Sbjct: 18 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GL L L L N I F F L L L E ++ + + LI+L+ L +
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 883 NRLKS 887
N + S
Sbjct: 138 NFIHS 142
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENG 451
LS N L + S +F N S L+ LDLS I I A L L L L N I G
Sbjct: 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98
Query: 452 SFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKN-KRLAAI 510
SF L L +L V+ + +L S + +L +L+ LN++ N IH ++ + N L +
Sbjct: 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158
Query: 511 RLDSNFLTDI 520
L N++ I
Sbjct: 159 DLSYNYIQTI 168
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
+ + +F + LQ LDL I IED A+ L++L + L+ N I + F+GL L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
L L +++S LK+L+++ N I ++P+ S L L +DL N I
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 447 KI 448
I
Sbjct: 167 TI 168
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 44/245 (17%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNC--------SALKELDLSSNAIVEIPSALSELPFLKTLD 439
LS L LS N L +F C ++L+ LDLS N + + + L L+ LD
Sbjct: 352 LSYLDLSRNAL------SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 440 LGENQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498
+ + ++ E +F +L++L L + N G+ L SL L ++ N +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 499 G-TFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLD 556
F L + L L I+ GVF L +L LN+S N+L++ D +
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS---------- 515
Query: 557 IHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE---LSIPNSVEVLFINNNLIKSVK 613
H N + SL+ LD S NRI E S+ P S+ + NN + +
Sbjct: 516 -HYNQLYSLS------------TLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSVACIC 561
Query: 614 PHTFF 618
H F
Sbjct: 562 EHQKF 566
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
I + F L LQ LD +++++ + E +AFLSL L + +S +F GL
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
L+ L ++ N +FK+ N + + + + L FL DL + Q+ +
Sbjct: 450 LNTLKMAGN--------SFKD-----------NTLSNVFANTTNLTFL---DLSKCQLEQ 487
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
I G F L +L L + NN+ L S +L SL L+ S N+I
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 796 VFIGRKNMLSL-YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL 854
+F+G ++ +L NS + L+ F ++L L L + FD L +L L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
+ N + ++ + +N L SL L NR+++ + + L L NN +C C
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562
Query: 915 TLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKE----IDLNSTTC 958
+ LQ W+ + + + ++C + P+ +D N++TC
Sbjct: 563 HQKFLQ-WVKEQKQFLVNVEQMTC-----ATPVEMNTSLVLDFNNSTC 604
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 327 TRIDAK-TFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG 384
T+ID F L L L + NS N F + NL + LS+ ++ I+ +F+
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 385 LYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELP 433
L+ L L +S+N L+ +DS + +L LD S N I L P
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 20 ISVTCNLNYLGKGGGSNLSFVPTDLITKL-NIDCDATVLLDSSITTKSFQNIYSLEELKI 78
I V N+ Y + LS VP D+ + NID L + + SF N L+ L +
Sbjct: 8 IEVVPNITY--QCMDQKLSKVPDDIPSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDL 63
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLXXXXXXX 138
S C++ + + GL +L L + +Q PGS GL L+ L
Sbjct: 64 SRCEIETIEDKAWHGLHHLSNLILTGNPIQ-------SFSPGSFSGLTSLENLVAVETKL 116
Query: 139 XXXXDDVFCSLANIQTLNLSRNSIR 163
L ++ LN++ N I
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIH 141
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIEYIANGTFNALI 873
+I++ F GL LQ L +++ + + F +LEKL L + + +G F L
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 874 SLQVLQLDGNRLK 886
SL L++ GN K
Sbjct: 449 SLNTLKMAGNSFK 461
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
DA T DL + L N + IE +L+ NL + L +N+I +T
Sbjct: 39 DAVTQADLDGIATLSAFNTGVTTIEGIQYLN--NLIGLELKDNQITDLTP---------- 86
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
KN + + EL+LS N + + SA++ L +KTLDL QI+ +
Sbjct: 87 ----------------LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT 129
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
L L L L N I N+S L L +L+ L++ N+++ ++ +L
Sbjct: 130 --PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVN--DLTPLANLSKLTT 183
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
+R D N ++DI+ L L+ ++L +N +
Sbjct: 184 LRADDNKISDISP-LASLPNLIEVHLKDNQI 213
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
L+L +NQI+ + KNL ++T+L L N + N+S+ + L S++ L+L+ +I +
Sbjct: 74 LELKDNQITDLT--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT--D 127
Query: 498 IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
+ L + LD N +T+I + LA L NL++L I
Sbjct: 128 VTPLAGLSNLQVLYLDLNQITNI----SPLAGL-------------------TNLQYLSI 164
Query: 558 HGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL-SIPNSVEVLFINNNLIKSVKP 614
N ++ L + + L A N+I +IS L S+PN +EV + +N I V P
Sbjct: 165 GNNQVNDLTPLANLS---KLTTLRADDNKISDISPLASLPNLIEV-HLKDNQISDVSP 218
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
++ LDL + I + A LS NL +YL N+I +I+ GL L L++ NN V
Sbjct: 115 IKTLDLTSTQITDVTPLAGLS--NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQ-V 169
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI 448
N D N S L L N I +I S L+ LP L + L +NQIS +
Sbjct: 170 N-DLTPLANLSKLTTLRADDNKISDI-SPLASLPNLIEVHLKDNQISDV 216
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 517 LTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS 576
+T I G+ YL L+ L L +N + + L++ GN L N I S
Sbjct: 59 VTTIEGI-QYLNNLIGLELKDNQITDLTPLKNLTKITELELSGN---PLKNVSAIAGLQS 114
Query: 577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI---YANDI 633
IK LD + +I +++ L+ ++++VL+++ N I ++ P +NL + I ND+
Sbjct: 115 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL--TNLQYLSIGNNQVNDL 172
Query: 634 TKL----DLTALR 642
T L LT LR
Sbjct: 173 TPLANLSKLTTLR 185
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T + L GN K + G +++ +L + ++QI + GLS+LQVL+L+ N IT+
Sbjct: 94 TELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN 149
Query: 840 FYGYE-FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAF 891
NL+ LS Q N + +AN L L L+ D N++
Sbjct: 150 ISPLAGLTNLQYLSIGNNQVNDLTPLAN-----LSKLTTLRADDNKISDISPL 197
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 35/167 (20%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
+N+ + EL++S L V +GL+++K L + + + D+ P L GL
Sbjct: 87 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT-------DVTP--LAGLS 135
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
LQVL L N+Q L++ N + D+ L +
Sbjct: 136 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLANLSK------------- 180
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
L L NK+ D S + L +HL++N+IS ++P
Sbjct: 181 ------LTTLRADDNKIS---DISPLASLPNLIEVHLKDNQISDVSP 218
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
+D +V V ELE+ NP ++L LH RD ++ +I++ E S + + VL
Sbjct: 15 RDAYWVENLXVQELENFNPPFKLXLHKRD------FIPGKWIIDNIIDSIEKSHKTVFVL 68
Query: 1096 TKNFLQTEWSR 1106
++NF+++EW +
Sbjct: 69 SENFVKSEWXK 79
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
++ L L N+I+ I L +LQ L + N+LKS + + L+K++L NP+
Sbjct: 422 RIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 910 SCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
CSC + L W+ NS K + S S P+R I
Sbjct: 481 DCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 518
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
L++ N I + + LSL L + +S NRI ++ +F L L LS+N LV I
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 403 SKAFKNCSALKELDLSSNAIVEIP-----SALSELPFL 435
N LK LDLS NA +P +S+L FL
Sbjct: 86 CHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
LQ+LD+ NS+ Y E S +K LS N+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSW---------------------------TKSLLSLNMSS 408
Query: 400 NIDSKAFKNC--SALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
NI + C +K LDL SN I IP + +L L+ L++ NQ+ + +G F L
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468
Query: 458 QLTDLRLVDN 467
L + L N
Sbjct: 469 SLQKIWLHTN 478
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 412 LKELDLSSNAIVEI--PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
+K +S +V + PS +S PFL LD N ++ + +L +L L L N +
Sbjct: 304 IKNFTVSGTRMVHMLCPSKIS--PFLH-LDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 470 GNLS--SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
LS + M ++ SL+ L++S+N + ++++ K G ++
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSV------SYDEKK----------------GDCSWT 398
Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSL 565
LL LN+S N L + +P +K LD+H N I S+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI 436
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 551 NLKWLDIHGNYISSLNNYYEIKDG-----LSIKNLDASHNRILEISELSIPNSVEVLFIN 605
+L+ LDI N +S Y+ K G S+ +L+ S N + + +P ++VL ++
Sbjct: 375 SLQQLDISQNSVS-----YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429
Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN-----KTLPEFYLGGN 660
+N IKS+ P L +++ +N +LK VP +L + +L N
Sbjct: 430 SNKIKSI-PKQVVKLEALQELNVASN----------QLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 661 PFDCDC-SMDWL 671
P+DC C +D+L
Sbjct: 479 PWDCSCPRIDYL 490
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 31/153 (20%)
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELD---LSSNAIVE---IPSALSELPFLKTLDLGENQ 444
L SNNLL + F+NC L EL+ L N + E I +++ L+ LD+ +N
Sbjct: 329 LDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 445 ISKIEN-GSFKNLQQLTDLRLVDN--------------NIGNLSSGMLYELP-------S 482
+S E G + L L + N + +L S + +P +
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA 445
Query: 483 LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L+ LN++ N++ + G F++ L I L +N
Sbjct: 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRA----SAESNSGEKIECSGGMDLRILDLSHNKL 203
SL+ ++ L +S N I+ +D F + N KI C ++L+ LDLS N
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF 102
Query: 204 RTL------GDYSGITKFRRLQNLHLENNEISQIA 232
L G+ S + KF L HLE + + IA
Sbjct: 103 DALPICKEFGNMSQL-KFLGLSTTHLEKSSVLPIA 136
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
L+L +NQI+ + KNL ++T+L L N + N+S+ + L S++ L+L+ +I +
Sbjct: 68 LELKDNQITDL--APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT--D 121
Query: 498 IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
+ L + LD N +T+I + LA L NL++L I
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNI----SPLAGLT-------------------NLQYLSI 158
Query: 558 HGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL-SIPNSVEVLFINNNLIKSVKPHT 616
+S L + + L A N+I +IS L S+PN +EV + NN I V P
Sbjct: 159 GNAQVSDLTPLANLS---KLTTLKADDNKISDISPLASLPNLIEV-HLKNNQISDVSP-- 212
Query: 617 FFDKSNLARVDIYANDIT 634
+ SNL V + IT
Sbjct: 213 LANTSNLFIVTLTNQTIT 230
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 402 DSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD 461
D KN + + EL+LS N + + SA++ L +KTLDL QI+ + L L
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQV 133
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
L L N I N+S L L +L+ L++ ++ ++ +L ++ D N ++DI+
Sbjct: 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--DLTPLANLSKLTTLKADDNKISDIS 189
Query: 522 GVFTYLAQLLWLNLSENHL 540
+ + L L+ ++L N +
Sbjct: 190 PLAS-LPNLIEVHLKNNQI 207
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 517 LTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS 576
+T I GV YL L+ L L +N + + L++ GN L N I S
Sbjct: 53 VTTIEGV-QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN---PLKNVSAIAGLQS 108
Query: 577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
IK LD + +I +++ L+ ++++VL+++ N I ++ P
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 35/167 (20%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
+N+ + EL++S L V +GL+++K L + + + D+ P L GL
Sbjct: 81 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT-------DVTP--LAGLS 129
Query: 127 ELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
LQVL L N+Q L++ + D+ L +
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSK------------- 174
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
L L NK+ D S + L +HL+NN+IS ++P
Sbjct: 175 ------LTTLKADDNKIS---DISPLASLPNLIEVHLKNNQISDVSP 212
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T + L GN K + G +++ +L + ++QI + GLS+LQVL+L+ N IT+
Sbjct: 88 TELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN 143
Query: 840 FYGYE-FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM 898
NL+ LS Q + + +AN L L L+ D N++ N
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTPLAN-----LSKLTTLKADDNKISDISPLASLPN-- 196
Query: 899 LRKVYLGNNPFS 910
L +V+L NN S
Sbjct: 197 LIEVHLKNNQIS 208
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 343 LDLRNNSIGYIEDNAFLSL-------YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN 395
+D N IG ++ F L N+ +I LS N+I LF+ LS + L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXG 466
Query: 396 NLLVNI-------DSKAFKNCSALKELDLSSNAIVEIPSAL--SELPFLKTLDLGENQIS 446
N L I +++ FKN L +DL N + ++ + LP+L +DL N S
Sbjct: 467 NXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Query: 447 KI 448
K
Sbjct: 527 KF 528
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 382 FNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLG 441
F G+ V S + LSNN + + F S L ++L N + EIP
Sbjct: 430 FKGINV-SSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIP--------------- 473
Query: 442 ENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM-LYELPSLEVLNLSKNKIHQI 496
+N + K EN +FKN LT + L N + LS LP L ++LS N +
Sbjct: 474 KNSL-KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 412 LKELDLSSNAIVEIPSA-LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
+KELDLS N + +I +A L+ L+ L+L N + E ++L L L L +N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEI--GTFEKNKRLAAIRLDSNFLTDINGVFTYLA 528
L G PS+E L+ + N I ++ G +KN LA ++ L D++
Sbjct: 94 ELLVG-----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRV 146
Query: 529 QLLWLNLSENHLVWF-DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL---SIKNLDASH 584
Q L L L+E V F + A L+ L++ N+I Y++K + +K LD S
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSS 200
Query: 585 NRILEIS-ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN 631
N++ + E V + + NN + ++ F + NL D+ N
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ-NLEHFDLRGN 247
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
SL+ ++TL+L+ N ++++ +G ++ A +N+ ++ CS G + + L++NK+ L
Sbjct: 78 SLSTLRTLDLNNNYVQEL-LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136
Query: 208 DYSGITKFRRLQNLHLENNEISQI 231
D + R+Q L L+ NEI +
Sbjct: 137 DLDEGCR-SRVQYLDLKLNEIDTV 159
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 412 LKELDLSSNAIVEIPSA-LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
+KELDLS N + +I +A L+ L+ L+L N + E ++L L L L +N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEI--GTFEKNKRLAAIRLDSNFLTDINGVFTYLA 528
L G PS+E L+ + N I ++ G +KN LA ++ L D++
Sbjct: 94 ELLVG-----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRV 146
Query: 529 QLLWLNLSENHLVWF-DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL---SIKNLDASH 584
Q L L L+E V F + A L+ L++ N+I Y++K + +K LD S
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSS 200
Query: 585 NRILEIS-ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN 631
N++ + E V + + NN + ++ F + NL D+ N
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ-NLEHFDLRGN 247
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
SL+ ++TL+L+ N ++++ +G ++ A +N+ ++ CS G + + L++NK+ L
Sbjct: 78 SLSTLRTLDLNNNYVQEL-LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136
Query: 208 DYSGITKFRRLQNLHLENNEISQI 231
D + R+Q L L+ NEI +
Sbjct: 137 DLDEGCR-SRVQYLDLKLNEIDTV 159
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALS 430
N + I H F+ L+ + +++ V+I + AF NC AL++++ SS I E+P S +
Sbjct: 251 NGVARIETHAFDSCAYLASVKXPDSV-VSIGTGAFXNCPALQDIEFSSR-ITELPESVFA 308
Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQL 459
LK++D+ E I++I + +F +QL
Sbjct: 309 GCISLKSIDIPEG-ITQILDDAFAGCEQL 336
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 61 SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI 102
SI T +F N +L++++ S+ ++ ELP VF+G +LK + I
Sbjct: 278 SIGTGAFXNCPALQDIEFSS-RITELPESVFAGCISLKSIDI 318
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 1091 VILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKT 1150
+++ L +++ S S+ ++ E S + I VL+ NF+Q EW +F A H +
Sbjct: 65 ILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENS 124
Query: 1151 HKLVLVEENIVPE---AESDIELKPYLKSCMKIRWGEKR-----FWERLRYAM 1195
++L+ +P +LK L+ + W + R FW LR A+
Sbjct: 125 DHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEWPKDRRKCGLFWANLRAAI 177
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 1037 DEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLT 1096
D +V ++ LE + S +CL+ S + + S ++ E S + I VL+
Sbjct: 46 DSLWVKNELIPNLEKEDGSILICLY------ESYFDPGKSISENIVSFIEKSYKSIFVLS 99
Query: 1097 KNFLQTEWSRSDFLIEA----AEASRRVILVL 1124
NF+Q EW +F E S +IL+L
Sbjct: 100 PNFVQNEWCHYEFYFAHHNLFHENSDHIILIL 131
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
H + LS +I +I+A++F + L++L L+ N L + ++ KN S L+ LDLS N +
Sbjct: 227 HALDLSNLQIFNISANIFKYDF-LTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTS 284
Query: 425 IPSALSELPFLKTLDLGENQISKI--ENGSFKNLQQL 459
+P+ L LK +N ++ + E G+ NLQ L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
L LSN + NI + FK L L L+ N++ E+P+ + L L+ LDL N+++ +
Sbjct: 229 LDLSNLQIFNISANIFK-YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP- 286
Query: 451 GSFKNLQQLTDLRLVDNNIGNL 472
+ QL DN + L
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTL 308
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 38.5 bits (88), Expect = 0.027, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 581 DASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTA 640
+ H + LE+ +L + L I + ++ V P F L+R+++ N L +
Sbjct: 40 NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-----LES 94
Query: 641 LRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
L K V Q +L E L GNP C C++ WL
Sbjct: 95 LSWKTV-QGLSLQELVLSGNPLHCSCALRWL 124
Score = 37.4 bits (85), Expect = 0.059, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 823 GLSSLQVLHLENNL-ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
G +L L++EN + H + L +L L + ++ + ++A F+ L L L
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
N L+S + S L+++ L NP CSCA L+ LQ W
Sbjct: 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA-LRWLQRW 127
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 329 IDAKTFKDLVFLQRLDL-RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
I+A F +L L + + + N++ YI AF +L NL + +S I H+ + ++
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHS 127
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
L K+ L ++ NI+ + S + LS +++ L L +N I +
Sbjct: 128 LQKVLL--DIQDNINIHTIERNSF---VGLSFESVI--------------LWLNKNGIQE 168
Query: 448 IENGSFKNLQQLTDLRLVD-NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
I N +F N QL +L L D NN+ L + + + +L++S+ +IH + E K+
Sbjct: 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227
Query: 507 LAA 509
L A
Sbjct: 228 LRA 230
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 1110 LIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE---AES 1166
+I E S + I VL+ NF+Q+EW + A H ++ L+L+ +P+ S
Sbjct: 59 IITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118
Query: 1167 DIELKPYLKSCMKIRWGEKR-----FWERLRYAM 1195
+LK + W +++ FW LR A+
Sbjct: 119 YHKLKSLXARRTYLEWPKEKSKRGLFWANLRAAI 152
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 1057 QLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEA--- 1113
Q+CLH R+ ++ + +I E S + I VL+ NF+Q+EW +
Sbjct: 41 QICLHERN------FVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNL 94
Query: 1114 -AEASRRVILVL 1124
E S +IL+L
Sbjct: 95 FHEGSNSLILIL 106
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 403 SKAFKNCSALKELDLSSNAIVE-IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD 461
S F N ++ LD+S N + IP + +P+L L+LG N IS +L+ L
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ--IEIGTFE 502
L L N + + L L ++LS N + E+G FE
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
A K L LS+N I +I S+LS + L+ L LG N I KIEN L +L + N I
Sbjct: 50 ACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWISYNQIA 107
Query: 471 NLSSGMLYELPSLEVLNLSKNKI 493
+LS + +L +L VL +S NKI
Sbjct: 108 SLSG--IEKLVNLRVLYMSNNKI 128
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD----LRILDLSHN 201
+ N++ L+L RN I+ I+ L S +I G++ LR+L +S+N
Sbjct: 67 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 126
Query: 202 KLRTLGDYSGITKFRRLQNLHLENN 226
K+ G+ + +L++L L N
Sbjct: 127 KITNWGEIDKLAALDKLEDLLLAGN 151
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 403 SKAFKNCSALKELDLSSNAIVE-IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD 461
S F N ++ LD+S N + IP + +P+L L+LG N IS +L+ L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ--IEIGTFE 502
L L N + + L L ++LS N + E+G FE
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
+ N +ELDL I I + + L +D +N+I K++ F L++L L +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVN 72
Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFE 502
+N I + G+ LP L L L+ N + +E+G +
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSL--VELGDLD 107
Score = 35.0 bits (79), Expect = 0.28, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 331 AKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390
A + + V + LDLR I IE N +L I S+N I + F L L
Sbjct: 12 AAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKT 68
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
L ++NN + I + L EL L++N++VE L +L L +L
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVE----LGDLDPLASL------------ 112
Query: 451 GSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ-IEIGTFEKNKRLAA 509
K+L L LR N + ++Y++P + VL+ K K+ + E K KR A
Sbjct: 113 ---KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQ 169
Query: 510 IRLD 513
+ D
Sbjct: 170 LAKD 173
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 27/84 (32%)
Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXXXXXXXXXVSL 255
+D S N++R L G RRL+ L + NN I +I
Sbjct: 47 IDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIG----------------------- 80
Query: 256 PEGLFSSCRDISEIYAQKNSLVEL 279
EGL + D++E+ NSLVEL
Sbjct: 81 -EGLDQALPDLTELILTNNSLVEL 103
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
A K L LS+N I +I S+LS + L+ L LG N I KIEN L +L + N I
Sbjct: 49 ACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWISYNQIA 106
Query: 471 NLSSGMLYELPSLEVLNLSKNKI 493
+LS + +L +L VL +S NKI
Sbjct: 107 SLSG--IEKLVNLRVLYMSNNKI 127
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD----LRILDLSHN 201
+ N++ L+L RN I+ I+ L S +I G++ LR+L +S+N
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125
Query: 202 KLRTLGDYSGITKFRRLQNLHLENN 226
K+ G+ + +L++L L N
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGN 150
>pdb|1T3G|A Chain A, Crystal Structure Of The TollINTERLEUKIN-1 Receptor (Tir)
Domain Of Human Il-1rapl
pdb|1T3G|B Chain B, Crystal Structure Of The TollINTERLEUKIN-1 Receptor (Tir)
Domain Of Human Il-1rapl
Length = 159
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 1115 EASRRVILVLTKNFL-QTEWSRSDFRSAIHEALTTKTHKLVLVE----ENIVPEAESDIE 1169
+ S+R+I+V T N++ + WS + + + L T K++L+E I E +
Sbjct: 66 DQSKRLIIVXTPNYVVRRGWSIFELETRLRNXLVTGEIKVILIECSELRGIXNYQEVE-A 124
Query: 1170 LKPYLKSCMKIRW-GEK------RFWERLRYAMP 1196
LK +K I+W G K +FW+RL+Y P
Sbjct: 125 LKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEXP 158
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQIS--TVPPRIPMDATHVYLDGNTFKTIP 793
CP CSC +VDC + ++ ++P P+D T + L GN +P
Sbjct: 2 CPAPCSC------AGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALP 47
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIS 937
L L GN L + L+ LR +LG NP+ C C L L+ W+ + D+
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC-RLVPLRAWLAGRPERAP-YRDLR 93
Query: 938 CVIDESSPP 946
CV +PP
Sbjct: 94 CV----APP 98
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIS 937
L L GN L S + LR +LG NP+ C C +L L+ W+ D + D+
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDC-SLTYLRLWLEDRPERAP-YRDLR 92
Query: 938 CVIDESSPP 946
CV +PP
Sbjct: 93 CV----APP 97
Score = 33.9 bits (76), Expect = 0.64, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVF 797
CP CSC +VDC + ++ +P +P T + L GN ++P F
Sbjct: 4 CPAPCSC------AGTLVDCGRRGLTALPA-LPARTTELVLTGNNLTSVPPGAF 50
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 634 TKLDLTALRLKPVPQN--KTLPEF---YLGGNPFDCDCSMDWL 671
T+L LT L VP LP+ +LG NP+ CDCS+ +L
Sbjct: 33 TELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYL 75
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 829 VLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL 872
V H ++ H + ++ + +L ++YL+ + +E IANGT N L
Sbjct: 63 VRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNIL 106
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLN 534
G+ Y LP+L LNLS N+I I + N + + L+ N LTDI L L WL
Sbjct: 61 GIQY-LPNLTSLNLSNNQITDISPIQYLPN--VTKLFLNGNKLTDIKP-LANLKNLGWLF 116
Query: 535 LSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
L EN + LK L + N IS +N + +++L +N+I +I+ LS
Sbjct: 117 LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP---QLESLYLGNNKITDITVLS 173
Query: 595 IPNSVEVLFINNNLIKSVKP 614
++ L + +N I + P
Sbjct: 174 RLTKLDTLSLEDNQISDIVP 193
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 329 IDAKTFKDLVFLQRLDL-RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
I+A F +L L + + + N++ YI AF +L NL + +S I H+ + ++
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHS 127
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
L K+ L ++ NI+ + S + LS +++ L L +N I +
Sbjct: 128 LQKVLL--DIQDNINIHTIERNSF---VGLSFESVI--------------LWLNKNGIQE 168
Query: 448 IENGSFKNLQQLTDLRLVD-NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
I N +F N QL +L L D NN+ L + + + +L++S+ +IH + E K+
Sbjct: 169 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227
Query: 507 LAA 509
L A
Sbjct: 228 LRA 230
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
LKEL LS N I ++ S L +L L+ L + N++ + L +L +DNN
Sbjct: 65 LKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL----FLDNNELR 119
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
+ +++ L +LE+L++ NK+ I + F +L + L N +T+ G+ T L ++
Sbjct: 120 DTDSLIH-LKNLEILSIRNNKLKSIVMLGFL--SKLEVLDLHGNEITNTGGL-TRLKKVN 175
Query: 532 WLNLS 536
W++L+
Sbjct: 176 WIDLT 180
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-LVNIDSKAFKNCSALKELDL--SSNA 421
T+ L E + I +H F+ L +S++ +S ++ L ++S +F N S + +++ + N
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 422 IVEIPSALSELPFLKTLDL 440
P AL ELP LK L +
Sbjct: 94 TYIDPDALKELPLLKFLGI 112
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 36/145 (24%)
Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPR---IPMDATHVYLDGNTFKTIPNHVFIGRKNML 804
C C ++++ D Q+I ++PP + + TH+ +TIP+H F N+
Sbjct: 8 CECHQEEDFRVTCKDI--QRIPSLPPSTQTLKLIETHL-------RTIPSHAFSNLPNIS 58
Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR-IEY 863
+YV+ I+V L Q LE+ + F NL K++ + ++ R + Y
Sbjct: 59 RIYVS---IDVTLQQ------------LES--------HSFYNLSKVTHIEIRNTRNLTY 95
Query: 864 IANGTFNALISLQVLQLDGNRLKSF 888
I L L+ L + LK F
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMF 120
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
L L N ++ NC +++ I + EL FL T+++G IS +
Sbjct: 14 LELRNRTPSDVKELVLDNCKSIE------GKIEGLTDEFEELEFLSTINVGLTSISNLPK 67
Query: 451 GSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE-IGTFEKNKRLAA 509
+ +L++ R+ G+L + + P+L+ LNLS NKI + I +K + L +
Sbjct: 68 LNKLKKLELSENRIS----GDLEV-LAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKS 122
Query: 510 IRLDSNFLTDING----VFTYLAQLLWLN 534
+ L + +T++N VF L Q+++L+
Sbjct: 123 LDLFNCEVTNLNAYRENVFKLLPQVMYLD 151
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
FC+ + LSR + +TL A+ R A+SNSGE GG D+ + L+ + + +
Sbjct: 870 FCT-GGMSLGALSREAH---ETLAIAMNRLGAKSNSGE-----GGEDV-VRYLTLDDVDS 919
Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAF 236
G+ + LQN N+ I QIA F
Sbjct: 920 EGNSPTLPHLHGLQNGDTANSAIKQIASGRF 950
>pdb|2W27|A Chain A, Crystal Structure Of The Bacillus Subtilis Ykui Protein,
With An Eal Domain, In Complex With Substrate C-Di-Gmp
And Calcium
pdb|2W27|B Chain B, Crystal Structure Of The Bacillus Subtilis Ykui Protein,
With An Eal Domain, In Complex With Substrate C-Di-Gmp
And Calcium
Length = 431
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLF-----I 604
NL LD HG L YE K G+ + H +LEI+E + +E L+
Sbjct: 115 ANLLMLD-HGESFLELLKEYEAK-GIEL------HRFVLEITEHNFEGDIEQLYHMLAYY 166
Query: 605 NNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL-KPVP 647
IK + + SNL R+ + + D+ K+DL AL++ +P P
Sbjct: 167 RTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSP 210
>pdb|2BAS|A Chain A, Crystal Structure Of The Bacillus Subtilis Ykui Protein,
With An Eal Domain.
pdb|2BAS|B Chain B, Crystal Structure Of The Bacillus Subtilis Ykui Protein,
With An Eal Domain
Length = 431
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLF-----I 604
NL LD HG L YE K G+ + H +LEI+E + +E L+
Sbjct: 115 ANLLXLD-HGESFLELLKEYEAK-GIEL------HRFVLEITEHNFEGDIEQLYHXLAYY 166
Query: 605 NNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL-KPVP 647
IK + + SNL R+ + + D+ K+DL AL++ +P P
Sbjct: 167 RTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSP 210
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 19/113 (16%)
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI--ANGTFN 870
I+V+LN+ + ++L+++ +N+ +L L L NR+ + +
Sbjct: 148 IDVVLNRRSSMAATLRIIE--------------ENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 871 ALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+L++L L GN LKS R D L +++L N C T ++ T+I
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL---CDTFRDQSTYI 243
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 61/279 (21%)
Query: 397 LLVNIDSKAFKNCSALKELDLSSNAIVE---IPSALSELPFLKTLDLG--ENQISKIENG 451
+L + D++ ++ + LDLS + + IPS+L+ LP+L L +G N + I
Sbjct: 41 VLCDTDTQTYR----VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 452 SFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIR 511
K L QL L + N+ L ++ +L L+ S N + + L I
Sbjct: 97 IAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 512 LDSNFLT----DINGVFTYLAQLLWLNLSENHLVWFDYAMVPG-----NLKWLDIHGNYI 562
D N ++ D G F+ L + +S N L +P NL ++D+ N +
Sbjct: 156 FDGNRISGAIPDSYGSFSKL--FTSMTISRNRLT----GKIPPTFANLNLAFVDLSRNML 209
Query: 563 --------SSLNNYYEI------------KDGLS--IKNLDASHNRIL-----EISELSI 595
S N +I K GLS + LD +NRI +++L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 596 PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI--YAND 632
+S+ V F NNL + NL R D+ YAN+
Sbjct: 270 LHSLNVSF--NNLCGEIP-----QGGNLQRFDVSAYANN 301
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 72 SLEELKISNCKLVELP---------VDVFSGLRNLKRLTINTRNL--QWDKSKKLDLVPG 120
SLEEL +SN KL+ELP + F+ L + L N + L +++ ++ +P
Sbjct: 318 SLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPE 377
Query: 121 SLDGLR 126
S++ LR
Sbjct: 378 SVEDLR 383
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI--ANGTFN 870
I+V+LN+ ++L+++ +N+ +L L L NR+ + +
Sbjct: 142 IDVVLNRRSCMAATLRIIE--------------ENIPELLSLNLSNNRLYRLDDMSSIVQ 187
Query: 871 ALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+L++L L GN LKS R D L +++L N C T ++ T+I
Sbjct: 188 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL---CDTFRDQSTYI 237
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
G + N + L L ++YL N+I IT + + L L L+L +N + +I A +
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLT 175
Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGE 442
L+ L LS N I S L L LK LD+ E
Sbjct: 176 KLQNLYLSKNHI----SDLRALAGLKNLDVLE 203
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI--ANGTFN 870
I+V+LN+ ++L+++ +N+ +L L L NR+ + +
Sbjct: 142 IDVVLNRRSCMAATLRIIE--------------ENIPELLSLNLSNNRLYRLDDMSSIVQ 187
Query: 871 ALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+L++L L GN LKS R D L +++L N C T ++ T+I
Sbjct: 188 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL---CDTFRDQSTYI 237
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI--ANGTFN 870
I+V+LN+ ++L+++ +N+ +L L L NR+ + +
Sbjct: 148 IDVVLNRRSCMAATLRIIE--------------ENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 871 ALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+L++L L GN LKS R D L +++L N C T ++ T+I
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL---CDTFRDQSTYI 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,218,360
Number of Sequences: 62578
Number of extensions: 1502394
Number of successful extensions: 5315
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 3303
Number of HSP's gapped (non-prelim): 1126
length of query: 1344
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1233
effective length of database: 8,027,179
effective search space: 9897511707
effective search space used: 9897511707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)