Query psy16377
Match_columns 1344
No_of_seqs 850 out of 7151
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:44:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.6E-46 1E-50 499.5 39.2 319 191-539 69-391 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-45 3.9E-50 493.8 41.4 535 44-665 70-609 (968)
3 KOG4194|consensus 100.0 1E-42 2.3E-47 390.7 10.8 415 388-962 80-502 (873)
4 KOG4194|consensus 100.0 8E-40 1.7E-44 367.6 6.9 399 3-465 45-447 (873)
5 KOG4237|consensus 100.0 5.8E-37 1.3E-41 331.8 -2.7 442 342-835 50-498 (498)
6 KOG0472|consensus 100.0 1.6E-35 3.6E-40 320.2 -14.7 451 191-663 45-541 (565)
7 KOG0472|consensus 100.0 1.5E-34 3.3E-39 312.8 -13.2 455 43-541 45-541 (565)
8 KOG0618|consensus 100.0 2E-31 4.4E-36 316.4 -3.1 480 75-608 2-487 (1081)
9 KOG0618|consensus 100.0 2.4E-31 5.2E-36 315.8 -2.9 465 41-562 19-488 (1081)
10 KOG0444|consensus 99.9 2.5E-29 5.5E-34 283.8 -3.2 351 118-498 24-379 (1255)
11 KOG4237|consensus 99.9 1.4E-28 2.9E-33 267.1 -0.4 164 2-202 35-199 (498)
12 KOG0444|consensus 99.9 9.1E-29 2E-33 279.3 -3.8 365 45-449 9-378 (1255)
13 PF01582 TIR: TIR domain; Int 99.9 8.3E-22 1.8E-26 199.9 9.6 124 1036-1194 9-141 (141)
14 PLN03210 Resistant to P. syrin 99.8 2.1E-19 4.5E-24 241.8 28.5 321 85-443 548-879 (1153)
15 PLN03210 Resistant to P. syrin 99.8 3.1E-19 6.7E-24 240.1 29.1 355 43-444 532-904 (1153)
16 PRK15387 E3 ubiquitin-protein 99.8 5.6E-19 1.2E-23 219.8 18.5 265 126-453 201-465 (788)
17 PRK15387 E3 ubiquitin-protein 99.8 6.8E-19 1.5E-23 219.1 17.2 261 316-639 203-463 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 1E-16 2.3E-21 201.4 14.1 120 507-634 306-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.7 2.2E-16 4.8E-21 198.4 13.6 225 316-566 180-404 (754)
20 smart00255 TIR Toll - interleu 99.6 9.6E-16 2.1E-20 155.9 10.5 133 1028-1198 3-140 (140)
21 cd00116 LRR_RI Leucine-rich re 99.5 1.5E-15 3.2E-20 178.0 2.8 275 366-662 2-319 (319)
22 cd00116 LRR_RI Leucine-rich re 99.5 8.9E-15 1.9E-19 171.3 6.7 84 386-469 137-233 (319)
23 KOG0617|consensus 99.4 1.8E-14 3.8E-19 140.3 -4.0 160 41-259 31-192 (264)
24 KOG0617|consensus 99.3 1.4E-13 2.9E-18 134.2 -4.2 164 211-380 28-191 (264)
25 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.4E-16 126.2 5.1 115 797-914 15-130 (175)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-11 2.6E-16 127.9 2.2 137 764-903 5-146 (175)
27 KOG1909|consensus 99.0 7.7E-11 1.7E-15 128.6 1.7 164 335-517 117-310 (382)
28 KOG3207|consensus 98.9 1.8E-10 3.9E-15 128.9 0.9 206 383-588 118-339 (505)
29 KOG1259|consensus 98.9 2.5E-10 5.4E-15 121.0 0.7 132 456-590 283-414 (490)
30 KOG3207|consensus 98.9 3.6E-10 7.8E-15 126.5 1.9 202 338-539 121-337 (505)
31 COG4886 Leucine-rich repeat (L 98.9 3.1E-09 6.8E-14 128.3 9.2 179 192-381 117-296 (394)
32 PF13855 LRR_8: Leucine rich r 98.9 2.1E-09 4.6E-14 91.6 4.1 61 825-885 1-61 (61)
33 KOG0531|consensus 98.8 4.5E-10 9.8E-15 135.7 -0.2 241 386-635 72-319 (414)
34 KOG1909|consensus 98.8 1.2E-09 2.6E-14 119.5 2.9 131 410-540 157-310 (382)
35 PLN03150 hypothetical protein; 98.8 6E-09 1.3E-13 131.6 9.4 112 803-914 420-532 (623)
36 KOG0531|consensus 98.8 4.8E-10 1E-14 135.5 -0.6 248 407-663 69-318 (414)
37 KOG0532|consensus 98.8 2.9E-10 6.2E-15 130.8 -3.8 216 154-397 54-271 (722)
38 KOG1259|consensus 98.8 2.1E-09 4.5E-14 114.1 2.3 129 241-377 285-414 (490)
39 PF13855 LRR_8: Leucine rich r 98.8 5E-09 1.1E-13 89.3 3.8 61 801-861 1-61 (61)
40 COG4886 Leucine-rich repeat (L 98.8 1.3E-08 2.8E-13 122.9 8.6 195 414-638 97-294 (394)
41 KOG0532|consensus 98.7 7.8E-10 1.7E-14 127.3 -4.1 175 69-277 73-247 (722)
42 KOG4658|consensus 98.7 1.6E-08 3.4E-13 130.1 6.1 108 190-299 544-653 (889)
43 KOG4658|consensus 98.5 5.8E-08 1.3E-12 125.0 4.5 128 126-275 523-653 (889)
44 TIGR00864 PCC polycystin catio 98.2 1.4E-06 3E-11 118.6 5.2 82 879-962 1-84 (2740)
45 KOG2120|consensus 98.1 9.6E-08 2.1E-12 102.0 -4.8 86 190-275 184-271 (419)
46 PLN03150 hypothetical protein; 98.1 6.4E-06 1.4E-10 104.3 9.9 105 412-516 420-526 (623)
47 PF13676 TIR_2: TIR domain; PD 98.1 1E-06 2.3E-11 83.9 1.7 82 1036-1161 8-89 (102)
48 PF13306 LRR_5: Leucine rich r 98.1 6.1E-06 1.3E-10 82.4 7.0 109 792-905 3-111 (129)
49 KOG1859|consensus 98.1 5.8E-08 1.2E-12 114.7 -8.8 191 119-328 102-293 (1096)
50 KOG1644|consensus 98.1 4.4E-06 9.6E-11 85.3 5.3 124 781-907 23-150 (233)
51 PF13306 LRR_5: Leucine rich r 98.0 1.3E-05 2.8E-10 79.9 7.5 117 778-900 13-129 (129)
52 KOG1859|consensus 98.0 4.6E-07 1E-11 107.3 -4.2 123 797-924 183-306 (1096)
53 PLN03194 putative disease resi 98.0 2.8E-05 6E-10 79.6 8.9 92 1025-1159 25-118 (187)
54 PRK15386 type III secretion pr 97.9 3.4E-05 7.3E-10 89.6 9.5 91 506-607 95-187 (426)
55 COG5238 RNA1 Ran GTPase-activa 97.9 3E-06 6.5E-11 89.7 -0.1 200 212-447 26-256 (388)
56 KOG1644|consensus 97.8 2E-05 4.4E-10 80.6 5.0 105 802-909 20-125 (233)
57 KOG2120|consensus 97.8 1.2E-06 2.5E-11 94.0 -4.1 128 412-539 187-324 (419)
58 KOG4579|consensus 97.8 6.3E-07 1.4E-11 85.4 -5.4 117 801-922 53-169 (177)
59 KOG2982|consensus 97.8 1.1E-05 2.3E-10 86.8 2.9 202 387-589 46-263 (418)
60 KOG2982|consensus 97.8 1.9E-05 4.1E-10 84.9 3.9 202 339-541 46-262 (418)
61 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.8E-10 60.2 3.3 38 850-888 2-39 (44)
62 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.9E-10 60.5 2.8 39 826-865 2-40 (44)
63 KOG4579|consensus 97.6 6E-06 1.3E-10 78.9 -2.2 90 190-282 52-141 (177)
64 COG5238 RNA1 Ran GTPase-activa 97.5 8.6E-05 1.9E-09 79.0 4.9 159 429-587 88-284 (388)
65 KOG4341|consensus 97.5 6.6E-06 1.4E-10 92.6 -4.4 256 189-469 162-438 (483)
66 PRK15386 type III secretion pr 97.4 0.00057 1.2E-08 79.6 9.9 137 477-632 48-188 (426)
67 smart00082 LRRCT Leucine rich 97.4 7.7E-05 1.7E-09 60.8 1.7 37 907-945 1-37 (51)
68 KOG4341|consensus 97.3 3.2E-05 7E-10 87.2 -1.5 292 217-533 139-457 (483)
69 KOG3665|consensus 97.3 0.00012 2.6E-09 92.5 2.8 110 126-254 122-234 (699)
70 KOG2123|consensus 97.1 3E-05 6.5E-10 82.7 -4.6 80 801-884 19-99 (388)
71 KOG3665|consensus 97.0 0.00024 5.2E-09 89.8 1.8 110 125-253 147-263 (699)
72 PF01582 TIR: TIR domain; Int 96.6 0.0022 4.9E-08 64.9 4.5 46 1083-1128 50-99 (141)
73 KOG2123|consensus 96.4 0.00031 6.8E-09 75.1 -3.4 84 215-302 18-102 (388)
74 TIGR00864 PCC polycystin catio 96.1 0.0031 6.8E-08 87.3 2.9 83 627-723 1-83 (2740)
75 KOG2739|consensus 96.0 0.0036 7.8E-08 67.5 2.3 101 190-295 42-150 (260)
76 KOG2739|consensus 96.0 0.0046 9.9E-08 66.7 2.9 106 126-248 43-151 (260)
77 smart00013 LRRNT Leucine rich 96.0 0.0082 1.8E-07 43.7 3.3 32 743-780 1-32 (33)
78 KOG1947|consensus 95.9 0.002 4.2E-08 80.2 -0.0 62 384-445 241-307 (482)
79 KOG1947|consensus 95.3 0.0038 8.2E-08 77.6 -0.8 17 406-422 358-374 (482)
80 smart00255 TIR Toll - interleu 95.2 0.031 6.8E-07 56.4 5.8 42 1083-1125 50-96 (140)
81 PF01462 LRRNT: Leucine rich r 94.6 0.034 7.4E-07 38.7 2.7 28 743-776 1-28 (28)
82 PF00560 LRR_1: Leucine Rich R 93.1 0.052 1.1E-06 35.4 1.3 16 851-866 2-17 (22)
83 smart00082 LRRCT Leucine rich 92.8 0.029 6.3E-07 45.5 -0.2 50 660-720 1-50 (51)
84 PF00560 LRR_1: Leucine Rich R 92.6 0.056 1.2E-06 35.3 1.0 21 826-847 1-21 (22)
85 KOG3678|consensus 92.0 2.3 5E-05 49.2 13.3 70 1108-1183 656-737 (832)
86 smart00370 LRR Leucine-rich re 91.4 0.095 2.1E-06 35.7 1.1 21 849-869 2-22 (26)
87 smart00369 LRR_TYP Leucine-ric 91.4 0.095 2.1E-06 35.7 1.1 21 849-869 2-22 (26)
88 smart00369 LRR_TYP Leucine-ric 89.6 0.21 4.6E-06 34.0 1.6 23 824-846 1-23 (26)
89 smart00370 LRR Leucine-rich re 89.6 0.21 4.6E-06 34.0 1.6 23 824-846 1-23 (26)
90 PF13504 LRR_7: Leucine rich r 89.1 0.25 5.5E-06 29.9 1.4 15 874-888 2-16 (17)
91 PF13504 LRR_7: Leucine rich r 88.9 0.21 4.6E-06 30.3 1.0 15 850-864 2-16 (17)
92 KOG4308|consensus 88.5 0.011 2.4E-07 71.8 -9.2 17 821-837 400-416 (478)
93 KOG4308|consensus 86.9 0.024 5.3E-07 68.9 -7.7 83 388-470 146-246 (478)
94 KOG0473|consensus 86.2 0.035 7.5E-07 58.5 -5.8 86 821-909 38-123 (326)
95 KOG3864|consensus 85.7 0.18 3.9E-06 52.6 -1.0 91 424-514 92-185 (221)
96 PLN03194 putative disease resi 83.3 1.5 3.3E-05 45.6 4.5 40 1083-1124 76-115 (187)
97 PF08937 DUF1863: MTH538 TIR-l 83.3 1.5 3.3E-05 43.6 4.5 51 1108-1163 62-112 (130)
98 PF13676 TIR_2: TIR domain; PD 83.1 0.5 1.1E-05 44.7 0.9 42 1083-1125 45-86 (102)
99 KOG0473|consensus 81.7 0.056 1.2E-06 57.0 -6.5 94 138-252 30-123 (326)
100 KOG3864|consensus 78.9 0.52 1.1E-05 49.3 -0.6 79 387-466 102-185 (221)
101 smart00365 LRR_SD22 Leucine-ri 74.1 2 4.4E-05 29.3 1.4 16 849-864 2-17 (26)
102 smart00365 LRR_SD22 Leucine-ri 68.7 3.5 7.5E-05 28.2 1.6 18 824-841 1-18 (26)
103 smart00364 LRR_BAC Leucine-ric 63.0 4.7 0.0001 27.5 1.3 18 873-890 2-19 (26)
104 smart00364 LRR_BAC Leucine-ric 59.8 6.4 0.00014 26.9 1.5 19 549-567 1-19 (26)
105 KOG3763|consensus 52.2 6.7 0.00014 47.4 1.2 37 873-909 244-282 (585)
106 PF13516 LRR_6: Leucine Rich r 50.8 3.3 7.2E-05 27.4 -0.9 15 433-447 2-16 (24)
107 KOG3763|consensus 39.7 20 0.00043 43.5 2.6 39 479-518 242-283 (585)
108 smart00368 LRR_RI Leucine rich 32.2 35 0.00075 23.7 1.8 14 873-886 2-15 (28)
109 KOG4242|consensus 23.0 2.4E+02 0.0052 34.1 7.4 260 338-601 165-466 (553)
110 PF05725 FNIP: FNIP Repeat; I 22.6 1E+02 0.0022 23.9 3.2 29 529-557 13-41 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-46 Score=499.53 Aligned_cols=319 Identities=28% Similarity=0.301 Sum_probs=139.1
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhh-cCCCCccEEEeeCCCCCC-CChhhhcCCCCCcE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF-VALSSLRILNISSNHLVS-LPEGLFSSCRDISE 268 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~ 268 (1344)
.+++.|+|++|.+++..+. .+..+++|+.|+|++|.+.+..|..+ .++++|++|+|++|.+.. +|.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----------- 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----------- 136 (968)
T ss_pred CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----------
Confidence 4455555555555443332 44555555555555555543333322 245555555555554432 221
Q ss_pred EEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC
Q psy16377 269 IYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348 (1344)
Q Consensus 269 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 348 (1344)
..+++|++|+|++|.+.+ ..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|
T Consensus 137 ----------------~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 137 ----------------GSIPNLETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ----------------cccCCCCEEECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 223444444444444432 11233344444444444444444333334444444444444444
Q ss_pred CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccch
Q psy16377 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPS 427 (1344)
Q Consensus 349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~ 427 (1344)
.+....+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .+|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 443333333444444444444444444444444444444444444444444444444444444444444444443 3344
Q ss_pred hhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCcc
Q psy16377 428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507 (1344)
Q Consensus 428 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 507 (1344)
.+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 44444444444444444444444444444444444444444432222234444444444444444443333334444444
Q ss_pred ceEeccccCCC-ChhhHhhcCCCCcEEEcCCCC
Q psy16377 508 AAIRLDSNFLT-DINGVFTYLAQLLWLNLSENH 539 (1344)
Q Consensus 508 ~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~ 539 (1344)
+.|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 44444444433 123333333444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-45 Score=493.84 Aligned_cols=535 Identities=22% Similarity=0.272 Sum_probs=349.0
Q ss_pred cceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCC-ccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcC
Q psy16377 44 LITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL 122 (1344)
Q Consensus 44 ~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~-~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~ 122 (1344)
.++.|+|+.+.+. +.+ +.+|..+++|+.|+|++|++. .+|...|.++++|++|+|++|++.. .+|.
T Consensus 70 ~v~~L~L~~~~i~---~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-------~~p~-- 136 (968)
T PLN00113 70 RVVSIDLSGKNIS---GKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-------SIPR-- 136 (968)
T ss_pred cEEEEEecCCCcc---ccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-------ccCc--
Confidence 4888999998873 344 468899999999999999986 7887777799999999998776642 2342
Q ss_pred CCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK 202 (1344)
Q Consensus 123 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~ 202 (1344)
+.+++|++|+|++|.+....+..++++++|++|+|++|.+....+.. +.++++|++|+|++|.
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----------------~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-----------------LTNLTSLEFLTLASNQ 199 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-----------------hhhCcCCCeeeccCCC
Confidence 45788999999999888655566888899999999888876432222 2347788888888888
Q ss_pred CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChh
Q psy16377 203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG 282 (1344)
Q Consensus 203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~ 282 (1344)
+++..+. .+.++++|+.|+|++|.+.+..|..++++++|++|++++|.+....+..|.++++|++|++++|.+....+.
T Consensus 200 l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 200 LVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 7754433 678888888888888888877788888888888888888877755555667777888888887777655445
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCC
Q psy16377 283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362 (1344)
Q Consensus 283 ~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~ 362 (1344)
.+.++++|++|++++|.+.+ ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..++
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred hHhhccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 55677777777777777665 2345566667777777777776666666666666666666666666544444555666
Q ss_pred CccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccchhhcCCCCccEEEcc
Q psy16377 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLG 441 (1344)
Q Consensus 363 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls 441 (1344)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..++.|+.|+++
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence 6666666666666555555555556666666666655555555555556666666655554 445555555555555555
Q ss_pred CCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-Ch
Q psy16377 442 ENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DI 520 (1344)
Q Consensus 442 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l 520 (1344)
+|.+.+..+..+..+++|+.|++++|.+ .+..+..+ ..++|+.|++++|.++ .+
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~------------------------~~~~p~~~-~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKF------------------------FGGLPDSF-GSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCcee------------------------eeecCccc-ccccceEEECcCCccCCcc
Confidence 5555555554445555555555555554 33322222 1244455555555444 23
Q ss_pred hhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--Cc
Q psy16377 521 NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NS 598 (1344)
Q Consensus 521 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~s 598 (1344)
|..+..+++|+.|++++|++.. .+|. .+..+++|+.|++++|.+++..+..+. ++
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~----~~p~-------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSG----EIPD-------------------ELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred ChhhhhhhccCEEECcCCccee----eCCh-------------------HHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 4445555555555555555541 1221 112234555566666655555443333 36
Q ss_pred ccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCccccc
Q psy16377 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665 (1344)
Q Consensus 599 L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~ 665 (1344)
|+.|+|++|++.+..|..+.++++|+.+++++|++.+.-+.. .....+....+.|||..|.
T Consensus 549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~------~~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST------GAFLAINASAVAGNIDLCG 609 (968)
T ss_pred CCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc------chhcccChhhhcCCccccC
Confidence 777777777777777777888888888888888887633221 1112344456788998874
No 3
>KOG4194|consensus
Probab=100.00 E-value=1e-42 Score=390.72 Aligned_cols=415 Identities=24% Similarity=0.379 Sum_probs=335.3
Q ss_pred eeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccC
Q psy16377 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467 (1344)
Q Consensus 388 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 467 (1344)
-+.|++++|.+..+....|.++++|+++++..|.++.||........|+.|+|.+|.|+.+..+.++.++.|+.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45688888888888888888899999999999999999887677777999999999999888888888899999999999
Q ss_pred CCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCccccCC
Q psy16377 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYA 546 (1344)
Q Consensus 468 ~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~ 546 (1344)
.|+.|+...|..-.++++|+|++|+|+.+..+.|..+.+|..|.|+.|+++.+| ..|..++.|+.|+|..|+|.-..+.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 998888877877788999999999999998888988889999999999999887 5788888888888888877633221
Q ss_pred CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccc--cCcccEEEcCCCcCCccCCCCCCCCCCcc
Q psy16377 547 MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSI--PNSVEVLFINNNLIKSVKPHTFFDKSNLA 624 (1344)
Q Consensus 547 ~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~--~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~ 624 (1344)
.++.+++|+.|.+..|.|..+....+ ...+++|+|..|++.....+.+.+++.|+
T Consensus 240 -----------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 240 -----------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred -----------------------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence 12334455555555555555443332 24566777777777777777778888888
Q ss_pred EEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCC
Q psy16377 625 RVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRG 704 (1344)
Q Consensus 625 ~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~ 704 (1344)
.|++++|.|..+...+..
T Consensus 297 ~L~lS~NaI~rih~d~Ws-------------------------------------------------------------- 314 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHIDSWS-------------------------------------------------------------- 314 (873)
T ss_pred hhccchhhhheeecchhh--------------------------------------------------------------
Confidence 888888887765432110
Q ss_pred CccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEE
Q psy16377 705 STHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYL 784 (1344)
Q Consensus 705 ~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L 784 (1344)
+-..+++|+|
T Consensus 315 ----------------------------------------------------------------------ftqkL~~LdL 324 (873)
T KOG4194|consen 315 ----------------------------------------------------------------------FTQKLKELDL 324 (873)
T ss_pred ----------------------------------------------------------------------hcccceeEec
Confidence 0023677888
Q ss_pred eCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccC---cccccCccccceeecccccc
Q psy16377 785 DGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFY---GYEFDNLEKLSELYLQENRI 861 (1344)
Q Consensus 785 ~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~N~l 861 (1344)
+.|+|+.+++..|..++.|+.|.|++|+|..+..++|.++.+|++|||++|.|+... ...|.+|++|+.|.|.+|+|
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 999999999999999999999999999999999999999999999999999998643 34589999999999999999
Q ss_pred ccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCC
Q psy16377 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID 941 (1344)
Q Consensus 862 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~ 941 (1344)
++|+..+|.++++|+.|+|.+|.|.+|-+..|..+ .|++|.+..-.|-|||+ +.||.+|+.++.-+ ......|.+|
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq-l~Wl~qWl~~~~lq--~sv~a~CayP 480 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ-LKWLAQWLYRRKLQ--SSVIAKCAYP 480 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc-HHHHHHHHHhcccc--cceeeeccCC
Confidence 99999999999999999999999999999999988 89999999999999999 89999999776433 4566899999
Q ss_pred CCCCCccccc--cCCcccccCcc
Q psy16377 942 ESSPPIRKEI--DLNSTTCTEYY 962 (1344)
Q Consensus 942 ~~~~~~~~~~--~~~~~~C~~~~ 962 (1344)
+...++ ..+ +.....|.+..
T Consensus 481 e~Lad~-~i~svd~~~lvC~Dsp 502 (873)
T KOG4194|consen 481 EPLADQ-SIVSVDTANLVCDDSP 502 (873)
T ss_pred cccccc-eeEeechhhceecCCC
Confidence 875543 333 33446798653
No 4
>KOG4194|consensus
Probab=100.00 E-value=8e-40 Score=367.56 Aligned_cols=399 Identities=28% Similarity=0.418 Sum_probs=203.2
Q ss_pred CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377 3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK 82 (1344)
Q Consensus 3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~ 82 (1344)
.||.-|.|.. +.++|..|.|...+...+..+-+..++.|++++|++ +.+....|.++++|++++|..|.
T Consensus 45 ~cpa~c~c~~-------~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl----~~id~~~f~nl~nLq~v~l~~N~ 113 (873)
T KOG4194|consen 45 ECPATCPCNT-------RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL----SHIDFEFFYNLPNLQEVNLNKNE 113 (873)
T ss_pred cCCCcCCCCc-------eeeecCccccccccccccCCcCccceeeeecccccc----ccCcHHHHhcCCcceeeeeccch
Confidence 4555555531 356677777766544444433334455666666665 34555556666666666666666
Q ss_pred CCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCC
Q psy16377 83 LVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162 (1344)
Q Consensus 83 i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l 162 (1344)
++.||. ......+|+.|+|..|-+. ++-.+.+..++.|++||||.|.|+.++...|..-.++++|+|++|+|
T Consensus 114 Lt~IP~-f~~~sghl~~L~L~~N~I~-------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 114 LTRIPR-FGHESGHLEKLDLRHNLIS-------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI 185 (873)
T ss_pred hhhccc-ccccccceeEEeeeccccc-------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc
Confidence 666652 1122233555555433322 12223344444555555555555555544444444555555555555
Q ss_pred CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242 (1344)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 242 (1344)
+++....|. ++.+|..|.|+.|.++.+|.. .|.++++|+.|+|..|.|....--.|.+|++|
T Consensus 186 t~l~~~~F~-----------------~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 186 TTLETGHFD-----------------SLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred ccccccccc-----------------ccchheeeecccCcccccCHH-HhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 554444442 133455555555555555544 44455555555555555444433344555555
Q ss_pred cEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEcc
Q psy16377 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLS 322 (1344)
Q Consensus 243 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls 322 (1344)
+.|.|..|.+..+..++|..+.++++|+|..|++..+..+++.++++|+.|+|++|.
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na----------------------- 304 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA----------------------- 304 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-----------------------
Confidence 555555555555555555555555555555555554444444444455555555554
Q ss_pred CCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCC-
Q psy16377 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI- 401 (1344)
Q Consensus 323 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 401 (1344)
|..+.......+++|++|+|+.|.++.++++.|..+..|++|.|+.|.+..+....|.++++|+.|+|++|.++..
T Consensus 305 ---I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 305 ---IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred ---hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 4444444444444555555555555544444444445555555555544444444444444444444444443322
Q ss_pred --ChhhhcCCCCCcEEEccCCCCCccc-hhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcc
Q psy16377 402 --DSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465 (1344)
Q Consensus 402 --~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 465 (1344)
....|.++++|+.|++.+|++..|| .+|.++..|+.|||.+|.|..+.+.+|..+ .|+.|.+.
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 1234555666666666666666655 355666666666666666666666666655 55555443
No 5
>KOG4237|consensus
Probab=100.00 E-value=5.8e-37 Score=331.76 Aligned_cols=442 Identities=26% Similarity=0.373 Sum_probs=314.6
Q ss_pred EEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccC-C
Q psy16377 342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS-N 420 (1344)
Q Consensus 342 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n 420 (1344)
.++-++-+++++|.. -.+....++|..|+++.+++..|+.+++|+.|+|++|.|+.|.|++|.++.+|..|-+.+ |
T Consensus 50 ~VdCr~~GL~eVP~~---LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPAN---LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcccCccc---CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 445555566666652 124567788888888888888888888888888888888888888888887777776665 7
Q ss_pred CCCccch-hhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccc
Q psy16377 421 AIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIG 499 (1344)
Q Consensus 421 ~l~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 499 (1344)
+|+.+|. .|.++..|+.|.+.-|++.-+..+.|..+++|..|.+.+|.+..|..+.|..+.+++.+.+..|.+...
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd--- 203 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD--- 203 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---
Confidence 7777774 567777777777777777777777777788887788888877777777777777777777776652111
Q ss_pred cccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE---EcCCCcCCCCCccccccCCCc
Q psy16377 500 TFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL---DIHGNYISSLNNYYEIKDGLS 576 (1344)
Q Consensus 500 ~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L---~Ls~n~l~~l~~~~~l~~~~~ 576 (1344)
-+++.+... +. ..+..+++.....-..+...++...+...+-.+++.+ ..+.+....+.....++.+++
T Consensus 204 --CnL~wla~~-~a-----~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~ 275 (498)
T KOG4237|consen 204 --CNLPWLADD-LA-----MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN 275 (498)
T ss_pred --cccchhhhH-Hh-----hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc
Confidence 000100000 00 0011112222111111222222222222111111111 112222333333445777889
Q ss_pred ccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCe
Q psy16377 577 IKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPE 654 (1344)
Q Consensus 577 L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~ 654 (1344)
|+.|++++|+|+++...++. ..+++|.|..|+|..+....|.++..|++|+|++|+|+.+.+.+|. ...++..
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-----~~~~l~~ 350 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-----TLFSLST 350 (498)
T ss_pred ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-----ccceeee
Confidence 99999999999999887765 5899999999999999999999999999999999999999887774 3457889
Q ss_pred EEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccccccc
Q psy16377 655 FYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCE 734 (1344)
Q Consensus 655 l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~ 734 (1344)
+++-+|||.|+|.+.||..+-... . ..++..|..|+. ++.+|+.++...+|.|.-. +
T Consensus 351 l~l~~Np~~CnC~l~wl~~Wlr~~--------~---~~~~~~Cq~p~~--~~~~~~~dv~~~~~~c~~~----------e 407 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWLGEWLRKK--------S---VVGNPRCQSPGF--VRQIPISDVAFGDFRCGGP----------E 407 (498)
T ss_pred eehccCcccCccchHHHHHHHhhC--------C---CCCCCCCCCCch--hccccchhccccccccCCc----------c
Confidence 999999999999999998643221 1 345777887754 5678899999999998722 2
Q ss_pred ccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccc
Q psy16377 735 FDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE 814 (1344)
Q Consensus 735 ~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~ 814 (1344)
...|.-...||..|+|. ..||.|+++++..+|.+||.++++||+++|.++.++.. .+.+| .+++++|+|.
T Consensus 408 e~~~~~s~~cP~~c~c~------~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 408 ELGCLTSSPCPPPCTCL------DTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRIS 477 (498)
T ss_pred ccCCCCCCCCCCCcchh------hhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH---HHhhh-hcccccCcee
Confidence 23456678899999995 45899999999999999999999999999999999986 44566 7788888888
Q ss_pred ccccchhcCCCccceeecccc
Q psy16377 815 VILNQTFNGLSSLQVLHLENN 835 (1344)
Q Consensus 815 ~i~~~~f~~l~~L~~L~Ls~N 835 (1344)
.+.+.+|.++++|.+|-|++|
T Consensus 478 ~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 478 SLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcccccchhhhheeEEecC
Confidence 888888888888888877765
No 6
>KOG0472|consensus
Probab=99.97 E-value=1.6e-35 Score=320.21 Aligned_cols=451 Identities=28% Similarity=0.427 Sum_probs=329.8
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
..|..|++++|.++.+.. .+.++..|.+|++++|.++.. |.+++.+..++.|+.+.|++..+|+.+ ....+|+.++
T Consensus 45 v~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhccH--hhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhh
Confidence 457777788887777665 367777788888888887776 556777778888888888887777766 5667777888
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
.+.|.+.++++++ +.+..|+.++..+|+++. . +..+..+.+|..+++.+|.+...++..+. ++.|++||...|.+
T Consensus 121 ~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~s--l-p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 121 CSSNELKELPDSI-GRLLDLEDLDATNNQISS--L-PEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred ccccceeecCchH-HHHhhhhhhhcccccccc--C-chHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence 8888887777765 566677777777777775 2 55666777777788888887777666555 77788888877777
Q ss_pred cccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhc
Q psy16377 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430 (1344)
Q Consensus 351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 430 (1344)
+.+++ .++.+.+|.-|++..|++..++ .|.+++.|++|.++.|++..+..+..+++.+|..||+.+|+++++|..+.
T Consensus 196 ~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 196 ETLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred hcCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH
Confidence 77776 4677777777888888777665 57777888888888887777766666677788888888888888888777
Q ss_pred CCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCccc----------------------------------
Q psy16377 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM---------------------------------- 476 (1344)
Q Consensus 431 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------------------------------- 476 (1344)
-+.+|+.||+++|.|++.++ .++++ .|+.|-+.+|.+..|-...
T Consensus 273 lLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 77788888888887777654 56777 7777777777543221111
Q ss_pred ----c---cCCCCccEEEcCCCcCcccccccccCCC--ccceEeccccCCCChhhHhhcCCCCc-EEEcCCCCCccccCC
Q psy16377 477 ----L---YELPSLEVLNLSKNKIHQIEIGTFEKNK--RLAAIRLDSNFLTDINGVFTYLAQLL-WLNLSENHLVWFDYA 546 (1344)
Q Consensus 477 ----~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~l~~L~-~L~Ls~n~l~~~~~~ 546 (1344)
| ..+.+.+.|++++-+++.++.+.|..-. -...+++++|++.++|..+..+..+. .+.++.|.+.+.+..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 1 1134566777777777777776665432 26677888888887776655554443 345555655543211
Q ss_pred -CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccc-ccCcccEEEcCCCcCCccCCCCCCCCCCcc
Q psy16377 547 -MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS-IPNSVEVLFINNNLIKSVKPHTFFDKSNLA 624 (1344)
Q Consensus 547 -~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~-~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~ 624 (1344)
..-+.|..|++++|.+.++|.. +..+..|++||+|.|++..++... .+..++.+-.++|++..+.+..+.++.+|+
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e--~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEE--MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhhhcchh--hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 1125789999999999999862 334567999999999988766532 335688888899999999999999999999
Q ss_pred EEEecCCCCcccccccccccCCCCCCCCCeEEcCCCccc
Q psy16377 625 RVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFD 663 (1344)
Q Consensus 625 ~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~ 663 (1344)
+||+.+|.|..+++. +..+..+..+.+.||||.
T Consensus 509 tLDL~nNdlq~IPp~------LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPI------LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChh------hccccceeEEEecCCccC
Confidence 999999999988763 345678899999999985
No 7
>KOG0472|consensus
Probab=99.97 E-value=1.5e-34 Score=312.75 Aligned_cols=455 Identities=26% Similarity=0.354 Sum_probs=272.5
Q ss_pred CcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcC
Q psy16377 43 DLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL 122 (1344)
Q Consensus 43 ~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~ 122 (1344)
..+..+.+++|++.. +. ..+.++..|.+|++.+|++.++|+ +++.+..++.|+.+.|++ ..+|..+
T Consensus 45 v~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~l--------s~lp~~i 110 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKL--------SELPEQI 110 (565)
T ss_pred cchhhhhhccCchhh----cc-HhhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchH--------hhccHHH
Confidence 346677777777732 33 356777788888888888887774 577777788888765544 3467777
Q ss_pred CCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK 202 (1344)
Q Consensus 123 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~ 202 (1344)
+.+.+|..|+.+.|.+..++++ ++.+..|..|+..+|++..++...+. +.+|..|++.+|+
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~------------------~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPEDMVN------------------LSKLSKLDLEGNK 171 (565)
T ss_pred hhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchHHHH------------------HHHHHHhhccccc
Confidence 7778888888888888777765 56677788888888887777664332 5677777777777
Q ss_pred CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChh
Q psy16377 203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG 282 (1344)
Q Consensus 203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~ 282 (1344)
++.+++. .-+++.|++||...|-+..+ |..++.+.+|+-|+|..|++..+|+ |.+|..|++|+++.|.+..+|..
T Consensus 172 l~~l~~~--~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae 246 (565)
T KOG0472|consen 172 LKALPEN--HIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAE 246 (565)
T ss_pred hhhCCHH--HHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHH
Confidence 7777764 33377777777777777665 5567777777777777777777774 67777777888877777777777
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC--
Q psy16377 283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-- 360 (1344)
Q Consensus 283 ~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~-- 360 (1344)
...++.+|.+|||..|+++. + +..+.-+.+|..||+++|.+++.+ ..++++ .|+.|-+.+|.+..+-...+..
T Consensus 247 ~~~~L~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred Hhcccccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence 77777777778887777775 2 445556677777778777777764 346676 7777777777665443222111
Q ss_pred ---CCCccE----EEccCCcc---c-----ccccccccCCCceeEEEccCCcCCCCChhhhcCCC--CCcEEEccCCCCC
Q psy16377 361 ---LYNLHT----IYLSENRI---H-----HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS--ALKELDLSSNAIV 423 (1344)
Q Consensus 361 ---l~~L~~----L~Ls~n~l---~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~ 423 (1344)
++.|+. =.++...- + ..........-+.+.|++++-+++.++.+.|..-. -....+++.|++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence 011111 00000000 0 00000012223455556666666665555554322 2455566666666
Q ss_pred ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC-------------
Q psy16377 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK------------- 490 (1344)
Q Consensus 424 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~------------- 490 (1344)
++|..+..+..+.+.-+..|+..+..+..++.+++|..|++++|.+.++|.+ +..+..|+.|+++.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~~y~l 480 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPECLYEL 480 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHHHhhH
Confidence 5555444443333322222223333333444444444444444444444443 23333444444444
Q ss_pred ----------CcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377 491 ----------NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 491 ----------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
|++..+++..+.++.+|..|||.+|.+..+|..++++++|++|++++|.+.
T Consensus 481 q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 481 QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 445455444455555555555555555555555555555555555555543
No 8
>KOG0618|consensus
Probab=99.96 E-value=2e-31 Score=316.41 Aligned_cols=480 Identities=25% Similarity=0.307 Sum_probs=229.6
Q ss_pred EEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCE
Q psy16377 75 ELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQT 154 (1344)
Q Consensus 75 ~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 154 (1344)
.+|++.+++.-||...+..-. |+.|+++.|.+.. . .++ ...+.-+|+.|||++|.+...|.. ++.+.+|+.
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~-~~~ln~~~N~~l~--~-pl~----~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ 72 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEA-LQILNLRRNSLLS--R-PLE----FVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQ 72 (1081)
T ss_pred CcccccccCcccchhhccHHH-HHhhhcccccccc--C-chH----HhhheeeeEEeeccccccccCCch-hhhHHHHhh
Confidence 367777777777765554433 7777776443321 0 011 122333477777777777766654 566677777
Q ss_pred EECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChh
Q psy16377 155 LNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234 (1344)
Q Consensus 155 L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 234 (1344)
|+++.|-|..++.. ++++.+|++|.|..|.+..+|. .+..+++|+.|+++.|.+..+ |.
T Consensus 73 ln~s~n~i~~vp~s------------------~~~~~~l~~lnL~~n~l~~lP~--~~~~lknl~~LdlS~N~f~~~-Pl 131 (1081)
T KOG0618|consen 73 LNLSRNYIRSVPSS------------------CSNMRNLQYLNLKNNRLQSLPA--SISELKNLQYLDLSFNHFGPI-PL 131 (1081)
T ss_pred cccchhhHhhCchh------------------hhhhhcchhheeccchhhcCch--hHHhhhcccccccchhccCCC-ch
Confidence 77777766655521 3446667777777776666665 366666777777777666655 55
Q ss_pred hhcCCCCccEEEeeCC-CCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCC
Q psy16377 235 AFVALSSLRILNISSN-HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL 313 (1344)
Q Consensus 235 ~~~~l~~L~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l 313 (1344)
.+..++.++.+..++| .+..++. . .++.+++..|.+..--......++. .|+|.+|.+. ...+..+
T Consensus 132 ~i~~lt~~~~~~~s~N~~~~~lg~-----~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-----~~dls~~ 198 (1081)
T KOG0618|consen 132 VIEVLTAEEELAASNNEKIQRLGQ-----T-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-----VLDLSNL 198 (1081)
T ss_pred hHHhhhHHHHHhhhcchhhhhhcc-----c-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-----hhhhhhc
Confidence 5666666666666666 1222211 1 1444444444333211111122222 3555555543 1223344
Q ss_pred CcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEc
Q psy16377 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393 (1344)
Q Consensus 314 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 393 (1344)
.+|+.|....|.+..+.. ..++|+.|+.+.|.+..+.. .+ -..+|+.++++.|++..++ .++..+.+|+.|..
T Consensus 199 ~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~-~p-~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV-HP-VPLNLQYLDISHNNLSNLP-EWIGACANLEALNA 271 (1081)
T ss_pred cchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc-cc-ccccceeeecchhhhhcch-HHHHhcccceEecc
Confidence 445555554444443321 12345555555554442221 11 1234445555555544444 44444455555555
Q ss_pred cCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCC-CcEEEcccCCCCCC
Q psy16377 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ-LTDLRLVDNNIGNL 472 (1344)
Q Consensus 394 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~l 472 (1344)
.+|.+..+ +..+...++|+.|.+..|.+..+|.....++.|++|+|..|.+...+...|.-... |+.|..+.|.+...
T Consensus 272 n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 272 NHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred cchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 55544333 22223334445555555555544444444455555555555444444433333222 44444444444333
Q ss_pred CcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhh-HhhcCCCCcEEEcCCCCCccccCCC-cCC
Q psy16377 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSENHLVWFDYAM-VPG 550 (1344)
Q Consensus 473 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-lp~ 550 (1344)
+...=...+.|+.|.+.+|++++--...+.+...|+.|+|++|++..+|. .+.++..|++|+||+|+++.++... .-.
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG 430 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence 32111223444555555555544433444444555555555555554442 3444555555555555554333110 012
Q ss_pred CccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccc-cccccc-CcccEEEcCCCc
Q psy16377 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI-SELSIP-NSVEVLFINNNL 608 (1344)
Q Consensus 551 ~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~-~~~~~~-~sL~~L~Ls~N~ 608 (1344)
.|+.|..++|.+..+|. +..++.|+.+|+|.|+++.. .+...| +.|++||+++|.
T Consensus 431 ~L~tL~ahsN~l~~fPe---~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFPE---LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHhhcCCceeechh---hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 44444445555444442 22233455555555544433 122333 344444444444
No 9
>KOG0618|consensus
Probab=99.96 E-value=2.4e-31 Score=315.81 Aligned_cols=465 Identities=25% Similarity=0.313 Sum_probs=357.6
Q ss_pred CCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCC
Q psy16377 41 PTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120 (1344)
Q Consensus 41 ~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~ 120 (1344)
+.+.+..|++..|-+. ..|-....+..+|+.|||++|.+...| ..+..+.+|+.|+++.|.+ ...|.
T Consensus 19 ~~~~~~~ln~~~N~~l----~~pl~~~~~~v~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i--------~~vp~ 85 (1081)
T KOG0618|consen 19 NNEALQILNLRRNSLL----SRPLEFVEKRVKLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYI--------RSVPS 85 (1081)
T ss_pred cHHHHHhhhccccccc----cCchHHhhheeeeEEeeccccccccCC-chhhhHHHHhhcccchhhH--------hhCch
Confidence 5566888888888763 233345566667999999999999888 4688889999999976655 44788
Q ss_pred cCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCC
Q psy16377 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH 200 (1344)
Q Consensus 121 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 200 (1344)
+...+++|++|.|.+|.+..+|.+ +..+.+|+.|+++.|.+..+|..-. .++.++.++.++
T Consensus 86 s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl~i~------------------~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFNHFGPIPLVIE------------------VLTAEEELAASN 146 (1081)
T ss_pred hhhhhhcchhheeccchhhcCchh-HHhhhcccccccchhccCCCchhHH------------------hhhHHHHHhhhc
Confidence 889999999999999999888876 7889999999999999887776433 267788888998
Q ss_pred C-CCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccccc
Q psy16377 201 N-KLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279 (1344)
Q Consensus 201 n-~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l 279 (1344)
| ++..++. .. ++.+++..|.+.+..+..+..++. .|+|.+|.+..+ ....+.+|+.|....|++..+
T Consensus 147 N~~~~~lg~------~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l 214 (1081)
T KOG0618|consen 147 NEKIQRLGQ------TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSEL 214 (1081)
T ss_pred chhhhhhcc------cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceE
Confidence 8 3333433 22 888888888888877777766665 699999988732 246788899999888888776
Q ss_pred ChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhc
Q psy16377 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359 (1344)
Q Consensus 280 ~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~ 359 (1344)
. -.-++|+.|+.++|.+.. . ..-.--.+|+.++++.|.++.++ ..+..|.+|+.|+..+|.+..++.. +.
T Consensus 215 ~----~~g~~l~~L~a~~n~l~~--~--~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~r-i~ 284 (1081)
T KOG0618|consen 215 E----ISGPSLTALYADHNPLTT--L--DVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLR-IS 284 (1081)
T ss_pred E----ecCcchheeeeccCccee--e--ccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHH-Hh
Confidence 5 345789999999998763 1 11122357899999999998887 7888899999999999999877764 44
Q ss_pred CCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCC-CcEEEccCCCCCccchhh-cCCCCccE
Q psy16377 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA-LKELDLSSNAIVEIPSAL-SELPFLKT 437 (1344)
Q Consensus 360 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~~l-~~l~~L~~ 437 (1344)
...+|+.|.+..|.+..+++. ..++++|++|+|..|++...++..|.-... |..|+.+.|.+...|..= ..++.|+.
T Consensus 285 ~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence 667888999988888777653 466888999999999888887765555443 778888888887776321 24567888
Q ss_pred EEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCC
Q psy16377 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517 (1344)
Q Consensus 438 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 517 (1344)
|.+.+|.+++.....+.+.+.|+.|+|++|.+..+|...+.+++.|++|+|++|+++.++ .....+..|+.|...+|.+
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCce
Confidence 888888888876667788888888888888888888888888888888888888888876 5667778888888888888
Q ss_pred CChhhHhhcCCCCcEEEcCCCCCcccc-CCCcC-CCccEEEcCCCcC
Q psy16377 518 TDINGVFTYLAQLLWLNLSENHLVWFD-YAMVP-GNLKWLDIHGNYI 562 (1344)
Q Consensus 518 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~-~~~lp-~~L~~L~Ls~n~l 562 (1344)
..+| .+..+++|+.+|+|.|+++... ....| ++|+.||+++|.-
T Consensus 443 ~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 443 LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 8888 6777888888888888876542 23445 6777777777753
No 10
>KOG0444|consensus
Probab=99.94 E-value=2.5e-29 Score=283.76 Aligned_cols=351 Identities=23% Similarity=0.356 Sum_probs=227.7
Q ss_pred CCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEE
Q psy16377 118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILD 197 (1344)
Q Consensus 118 ~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 197 (1344)
.|.....+++++.|.|....+..+|.+ ++.|.+|++|.+++|++..+-.. ++.++.|+.++
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGE------------------Ls~Lp~LRsv~ 84 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGE------------------LSDLPRLRSVI 84 (1255)
T ss_pred CchhHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhh------------------hccchhhHHHh
Confidence 455555566666666666666666554 55666666666666665433211 23356666666
Q ss_pred CCCCCCC--CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCc
Q psy16377 198 LSHNKLR--TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275 (1344)
Q Consensus 198 Ls~n~l~--~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~ 275 (1344)
+..|++. ++|. .+-.+..|+.|||+.|++.+. |..+..-+++-+|+||+|+|.+||..+|.++..|-.|+|++|.
T Consensus 85 ~R~N~LKnsGiP~--diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPT--DIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCc--hhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 6666554 3554 366677777777777777665 5666667777777777777777777777777777777777777
Q ss_pred ccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc-cccccccCCCcccEEEecCCCccccc
Q psy16377 276 LVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRNNSIGYIE 354 (1344)
Q Consensus 276 l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~ 354 (1344)
+..+||.+ ..+..|++|+|++|.+.- .....+..+++|++|.+++.+-+- -.|..+.++.+|..+|++.|++..++
T Consensus 162 Le~LPPQ~-RRL~~LqtL~Ls~NPL~h--fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 162 LEMLPPQI-RRLSMLQTLKLSNNPLNH--FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred hhhcCHHH-HHHhhhhhhhcCCChhhH--HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 77777766 677778888888877653 233444555666677777654332 23455677778888888888877776
Q ss_pred hhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC--ccchhhcCC
Q psy16377 355 DNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPSALSEL 432 (1344)
Q Consensus 355 ~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l 432 (1344)
+ .+.++++|+.|+|++|+++.+... .+...+|++|+++.|+++.+ |.++..++.|+.|.+.+|+++ .||.+++.+
T Consensus 239 e-cly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 239 E-CLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred H-HHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 5 455777888888888877765432 23345666777777776655 456666677777777777655 667777777
Q ss_pred CCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccccc
Q psy16377 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498 (1344)
Q Consensus 433 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~ 498 (1344)
..|+.+..++|.+. ..|..+..|..|+.|.|+.|.+-.+|.+ +.-++.|+.|++..|.-...++
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCccCCC
Confidence 77777777666543 3345666667777777777766666554 4556667777776665444333
No 11
>KOG4237|consensus
Probab=99.94 E-value=1.4e-28 Score=267.10 Aligned_cols=164 Identities=27% Similarity=0.404 Sum_probs=138.6
Q ss_pred CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377 2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC 81 (1344)
Q Consensus 2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~ 81 (1344)
..||.-|.|..++ +..|+|+.+.++.+| .++ | +.++.|+|+.|.| ++||+++|+.+++||.|||+.|
T Consensus 35 ~~CP~pC~Cs~~~----g~~VdCr~~GL~eVP-~~L---P-~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N 101 (498)
T KOG4237|consen 35 SACPAPCTCSDVE----GGIVDCRGKGLTEVP-ANL---P-PETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKN 101 (498)
T ss_pred ccCCCCcccCCCC----CceEEccCCCcccCc-ccC---C-CcceEEEeccCCc----ccCChhhccchhhhceeccccc
Confidence 4699999996433 237999999999999 666 4 4588999999999 6799999999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEEccc-ccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC
Q psy16377 82 KLVELPVDVFSGLRNLKRLTINT-RNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160 (1344)
Q Consensus 82 ~i~~l~~~~f~~l~~L~~L~Ls~-n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n 160 (1344)
+|+.|.+++|.+++.|..|-+.+ |++. .+....|++|..|+.|.+.-|.+.-+..++|..+++|..|.+..|
T Consensus 102 ~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 102 NISFIAPDAFKGLASLLSLVLYGNNKIT-------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred chhhcChHhhhhhHhhhHHHhhcCCchh-------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence 99999999999999999998876 3332 345567999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377 161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK 202 (1344)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~ 202 (1344)
.+..+....|. ++..++.+.+..|.
T Consensus 175 ~~q~i~~~tf~-----------------~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 175 KIQSICKGTFQ-----------------GLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhcccccc-----------------chhccchHhhhcCc
Confidence 99888776553 25666666666664
No 12
>KOG0444|consensus
Probab=99.94 E-value=9.1e-29 Score=279.32 Aligned_cols=365 Identities=26% Similarity=0.359 Sum_probs=231.9
Q ss_pred ceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCC
Q psy16377 45 ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124 (1344)
Q Consensus 45 l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~ 124 (1344)
++-.|+++|+. ++.--+.....++.++-|.|...++..+|. .++.|.+|+.|.++.|++. .+-..++.
T Consensus 9 VrGvDfsgNDF---sg~~FP~~v~qMt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~--------~vhGELs~ 76 (1255)
T KOG0444|consen 9 VRGVDFSGNDF---SGDRFPHDVEQMTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLI--------SVHGELSD 76 (1255)
T ss_pred eecccccCCcC---CCCcCchhHHHhhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhhH--------hhhhhhcc
Confidence 56677777776 333333566777778888888777777774 4777777787777666543 23445666
Q ss_pred CCCCCEEEccCCCCC--ccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377 125 LRELQVLNISSSNIK--SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK 202 (1344)
Q Consensus 125 l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~ 202 (1344)
++.|+.+++..|++. ++|++.| .+..|..|+|++|+++++|..- ..-+++-+|+||+|+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~L------------------E~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNL------------------EYAKNSIVLNLSYNN 137 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhh------------------hhhcCcEEEEcccCc
Confidence 777777777777665 5666644 5777777777777777665421 124566777777777
Q ss_pred CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcc--cccC
Q psy16377 203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL--VELS 280 (1344)
Q Consensus 203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l--~~l~ 280 (1344)
|..+|.. .|.++..|-.|||++|++..+ |..+..+..|++|+|++|.+....-..+..+++|+.|.+++.+- ..+|
T Consensus 138 IetIPn~-lfinLtDLLfLDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 138 IETIPNS-LFINLTDLLFLDLSNNRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred cccCCch-HHHhhHhHhhhccccchhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 7777765 667777777777777777666 34566677777777777765533222233455666666666542 3555
Q ss_pred hhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC
Q psy16377 281 RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360 (1344)
Q Consensus 281 ~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~ 360 (1344)
..+ ..+.+|..+|+|.|.+.. -+..+..+.+|+.|+|++|.++.+.. ....-.+|++|+|+.|+++.++. ++..
T Consensus 216 tsl-d~l~NL~dvDlS~N~Lp~---vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-avcK 289 (1255)
T KOG0444|consen 216 TSL-DDLHNLRDVDLSENNLPI---VPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-AVCK 289 (1255)
T ss_pred Cch-hhhhhhhhccccccCCCc---chHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-HHhh
Confidence 543 566677777777776653 35566666777777777776665532 22333566677777777666665 4556
Q ss_pred CCCccEEEccCCcccc-cccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEE
Q psy16377 361 LYNLHTIYLSENRIHH-ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLD 439 (1344)
Q Consensus 361 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 439 (1344)
++.|+.|++.+|++.- -+|..++++..|+.+...+|.+.- .|+.+..|..|+.|.|+.|.+..+|+++.-++.|+.||
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence 6667777776666542 234445666666666666665533 35566666667777777776666666666666666777
Q ss_pred ccCCCCCccC
Q psy16377 440 LGENQISKIE 449 (1344)
Q Consensus 440 Ls~n~i~~~~ 449 (1344)
+..|.-...+
T Consensus 369 lreNpnLVMP 378 (1255)
T KOG0444|consen 369 LRENPNLVMP 378 (1255)
T ss_pred ccCCcCccCC
Confidence 6666543333
No 13
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.86 E-value=8.3e-22 Score=199.88 Aligned_cols=124 Identities=33% Similarity=0.580 Sum_probs=114.5
Q ss_pred chhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus 1036 ~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
+|++||...|.|.||+..++|++|+++||+.+|..+. +++.++|+
T Consensus 9 ~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~-----------------------------------~~i~~~i~ 53 (141)
T PF01582_consen 9 DDREWFVSHLLPELEERPYGYKLCLDERDFLPGESIL-----------------------------------DNIQEAIE 53 (141)
T ss_dssp HGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHH-----------------------------------HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCeEEEEechhhccccccc-----------------------------------chhhHhhh
Confidence 5899999999999998768999999999999999999 99999999
Q ss_pred hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccch--hhHHHHhhhccEEEeCch-------h
Q psy16377 1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD--IELKPYLKSCMKIRWGEK-------R 1186 (1344)
Q Consensus 1116 ~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~--~~l~~~l~~~~~l~w~~~-------~ 1186 (1344)
+|||+|+|+|++|++++||.+|++.|++.+..+++.++|+|.+.++++.... ..++.+++..+|++|+++ +
T Consensus 54 ~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 133 (141)
T PF01582_consen 54 RSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSW 133 (141)
T ss_dssp TEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHH
T ss_pred hceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHH
Confidence 9999999999999999999999999999999999899999999999988877 578889999999999765 6
Q ss_pred hHHHhHhh
Q psy16377 1187 FWERLRYA 1194 (1344)
Q Consensus 1187 Fw~~l~~~ 1194 (1344)
||++||||
T Consensus 134 fW~~l~~~ 141 (141)
T PF01582_consen 134 FWKKLRYH 141 (141)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999986
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.1e-19 Score=241.76 Aligned_cols=321 Identities=20% Similarity=0.213 Sum_probs=183.5
Q ss_pred ccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCC-CCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCC
Q psy16377 85 ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR-ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIR 163 (1344)
Q Consensus 85 ~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~ 163 (1344)
.+...+|.++++|+.|.+..+.... .......+|..|..++ +|+.|++.++.+..+|.. | ...+|+.|++.+|.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~-~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQ-KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccc-cccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccc
Confidence 3456678888888888875443211 1111123455566553 588888888888888765 3 4678888888888777
Q ss_pred CCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC-CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377 164 DIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK-LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242 (1344)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~-l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 242 (1344)
.++.. ...+++|+.|+|+++. +..+|. ++.+++|+.|+|++|......|..+.++++|
T Consensus 625 ~L~~~------------------~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 625 KLWDG------------------VHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccccc------------------cccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 65432 1236788888888764 555553 6777888888888876655567778888888
Q ss_pred cEEEeeCC-CCCCCChhhhcCCCCCcEEEcccCcc-cccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377 243 RILNISSN-HLVSLPEGLFSSCRDISEIYAQKNSL-VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN 320 (1344)
Q Consensus 243 ~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~ 320 (1344)
+.|++++| .+..+|... ++++|+.|++++|.. ..+|. ...+|+.|++++|.+.. ++. ...+++|+.|.
T Consensus 684 ~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~--lP~--~~~l~~L~~L~ 753 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE--FPS--NLRLENLDELI 753 (1153)
T ss_pred CEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc--ccc--ccccccccccc
Confidence 88888876 466666543 577788888877743 23331 23567777777777654 221 12456666666
Q ss_pred ccCCCCCcc-------ccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEc
Q psy16377 321 LSNNELTRI-------DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393 (1344)
Q Consensus 321 Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 393 (1344)
+.++....+ .+..+...++|+.|+|++|......+..+.++++|+.|++++|...+..|... .+++|+.|++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 655332111 11112223455556665554322222245555556666655553222222222 3455555555
Q ss_pred cCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCC
Q psy16377 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGEN 443 (1344)
Q Consensus 394 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 443 (1344)
++|......+. ..++|+.|+|++|.+..+|.++..+++|+.|++++|
T Consensus 833 s~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 833 SGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence 55433222121 123455555555555555555555555555555543
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.1e-19 Score=240.13 Aligned_cols=355 Identities=23% Similarity=0.274 Sum_probs=268.5
Q ss_pred CcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCC-------ccChhhhcCC-CCCCEEEcccccCcccCCcc
Q psy16377 43 DLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV-------ELPVDVFSGL-RNLKRLTINTRNLQWDKSKK 114 (1344)
Q Consensus 43 ~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~-------~l~~~~f~~l-~~L~~L~Ls~n~~~~~~~~~ 114 (1344)
+.++.+.+.-+.+. ...+.+.+|.++++|+.|.+..+.+. .+| +.|..+ .+|+.|.+.++.+
T Consensus 532 ~~v~~i~l~~~~~~--~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l------- 601 (1153)
T PLN03210 532 KKVLGITLDIDEID--ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPL------- 601 (1153)
T ss_pred ceeeEEEeccCccc--eeeecHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCC-------
Confidence 34555555544443 24567789999999999999765421 344 345555 4699999965543
Q ss_pred cccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC-CCCCCCcchhhhccccccCCCCccccCCCCcc
Q psy16377 115 LDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS-IRDIDTLGFAVRRASAESNSGEKIECSGGMDL 193 (1344)
Q Consensus 115 l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L 193 (1344)
..+|..| ...+|+.|+|++|.+..++.. +..+++|+.|+|+++. +..++.. +.+++|
T Consensus 602 -~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~l-------------------s~l~~L 659 (1153)
T PLN03210 602 -RCMPSNF-RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPDL-------------------SMATNL 659 (1153)
T ss_pred -CCCCCcC-CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCcc-------------------ccCCcc
Confidence 4577777 468999999999999988765 6789999999999875 6665542 337899
Q ss_pred cEEECCCCC-CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCC-CCCChhhhcCCCCCcEEEc
Q psy16377 194 RILDLSHNK-LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL-VSLPEGLFSSCRDISEIYA 271 (1344)
Q Consensus 194 ~~LdLs~n~-l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~f~~l~~L~~L~L 271 (1344)
+.|+|++|. +..+|. .+.++++|+.|++++|...+..|..+ ++++|+.|++++|.. ..+|. ...+|++|++
T Consensus 660 e~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L 732 (1153)
T PLN03210 660 ETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDL 732 (1153)
T ss_pred cEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeec
Confidence 999999984 666776 58999999999999986555556544 789999999999853 33442 2468999999
Q ss_pred ccCcccccChhhhcCCCCCCEEEccCCCCCCC-----CCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEec
Q psy16377 272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSN-----HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346 (1344)
Q Consensus 272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~-----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 346 (1344)
++|.+..+|... .+++|+.|.+.++..... .+....+...++|+.|++++|......|..++++++|+.|+|+
T Consensus 733 ~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 733 DETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred CCCccccccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 999999888654 678899998877542110 0111223345789999999997766667789999999999999
Q ss_pred CCC-ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCC-CCCc
Q psy16377 347 NNS-IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN-AIVE 424 (1344)
Q Consensus 347 ~n~-l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 424 (1344)
+|. +..++... .+++|+.|++++|......+.. ..+|+.|+|++|.+..+ |..+..+++|+.|++++| ++..
T Consensus 811 ~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 811 NCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc
Confidence 874 66676533 7899999999998654433322 36899999999999876 567899999999999995 6778
Q ss_pred cchhhcCCCCccEEEccCCC
Q psy16377 425 IPSALSELPFLKTLDLGENQ 444 (1344)
Q Consensus 425 lp~~l~~l~~L~~L~Ls~n~ 444 (1344)
+|..+..+++|+.|++++|.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCcccccccCCCeeecCCCc
Confidence 88888889999999998884
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5.6e-19 Score=219.80 Aligned_cols=265 Identities=26% Similarity=0.288 Sum_probs=164.4
Q ss_pred CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC
Q psy16377 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205 (1344)
Q Consensus 126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~ 205 (1344)
..-..|+|+++.++.+|+.. . ++|+.|++.+|+++.++.. .++|++|+|++|+++.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~l---------------------p~~Lk~LdLs~N~Lts 256 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPAL---------------------PPELRTLEVSGNQLTS 256 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCCC---------------------CCCCcEEEecCCccCc
Confidence 44667888888888877653 2 4678888888887766531 4678888888888887
Q ss_pred CCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH 285 (1344)
Q Consensus 206 l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~ 285 (1344)
+|.. .++|+.|++++|.+..+ |.. ..+|+.|++++|+++.+|.. .++|+.|++++|.+..+|..
T Consensus 257 LP~l-----p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~l--- 320 (788)
T PRK15387 257 LPVL-----PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPAL--- 320 (788)
T ss_pred ccCc-----ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccccccc----ccccceeECCCCccccCCCC---
Confidence 7642 35777888888877665 322 24677788888877777642 35677777777777776541
Q ss_pred CCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCcc
Q psy16377 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365 (1344)
Q Consensus 286 ~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~ 365 (1344)
..+|+.|++++|.++. ++. + ..+|+.|+|++|+++.++.. ..+|+.|++++|.+..++.. ..+|+
T Consensus 321 -p~~L~~L~Ls~N~L~~--LP~--l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~L~ 385 (788)
T PRK15387 321 -PSELCKLWAYNNQLTS--LPT--L--PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLK 385 (788)
T ss_pred -cccccccccccCcccc--ccc--c--ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccccc
Confidence 2356677777777664 321 1 13567777777776665431 24566666777766655531 24566
Q ss_pred EEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCC
Q psy16377 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQI 445 (1344)
Q Consensus 366 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i 445 (1344)
.|++++|.+..++.. .++|+.|++++|.+..++. . ..+|+.|++++|+++.+|..+..+++|+.|+|++|++
T Consensus 386 ~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 386 ELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred eEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 666666666554321 2455666666666655432 1 2345566666666666666666666666666666666
Q ss_pred CccCcchh
Q psy16377 446 SKIENGSF 453 (1344)
Q Consensus 446 ~~~~~~~~ 453 (1344)
++..+..+
T Consensus 458 s~~~~~~L 465 (788)
T PRK15387 458 SERTLQAL 465 (788)
T ss_pred CchHHHHH
Confidence 55444333
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=6.8e-19 Score=219.08 Aligned_cols=261 Identities=21% Similarity=0.277 Sum_probs=141.2
Q ss_pred ccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC
Q psy16377 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN 395 (1344)
Q Consensus 316 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 395 (1344)
-..|+++++.++.+++. +. .+|+.|++.+|.++.++. .+++|++|++++|+++.++. ..++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeeccC
Confidence 44566666666654332 22 255666666666655543 23455555555555554431 123444555555
Q ss_pred CcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcc
Q psy16377 396 NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSG 475 (1344)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 475 (1344)
|.+..+.. . ..+|+.|++++|+++.+|.. .++|+.|++++|++. .++..
T Consensus 272 N~L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~------------------------~Lp~l 320 (788)
T PRK15387 272 NPLTHLPA-L---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA------------------------SLPAL 320 (788)
T ss_pred Cchhhhhh-c---hhhcCEEECcCCcccccccc---ccccceeECCCCccc------------------------cCCCC
Confidence 54443321 1 13344444555544444431 234444444444444 33321
Q ss_pred cccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377 476 MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555 (1344)
Q Consensus 476 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L 555 (1344)
..+|+.|++++|.++.++. + ..+|+.|+|++|+++.+|.. ..+|+.|++++|++..++ .+|.+|+.|
T Consensus 321 ----p~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP--~l~~~L~~L 387 (788)
T PRK15387 321 ----PSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP--ALPSGLKEL 387 (788)
T ss_pred ----cccccccccccCccccccc--c--ccccceEecCCCccCCCCCC---CcccceehhhccccccCc--ccccccceE
Confidence 1234444444444443321 1 12455555555555555432 234555566666665443 234566777
Q ss_pred EcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcc
Q psy16377 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635 (1344)
Q Consensus 556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~ 635 (1344)
++++|.|+.++.. ..+|+.|++++|++++++. .+.+|+.|++++|+|+. +|..|.++++|+.|+|++|+|++
T Consensus 388 dLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 388 IVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred EecCCcccCCCCc-----ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCc
Confidence 7777777766542 2367788888888777653 35577888888888875 46677888888888888888876
Q ss_pred cccc
Q psy16377 636 LDLT 639 (1344)
Q Consensus 636 l~~~ 639 (1344)
..+.
T Consensus 460 ~~~~ 463 (788)
T PRK15387 460 RTLQ 463 (788)
T ss_pred hHHH
Confidence 5443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1e-16 Score=201.36 Aligned_cols=120 Identities=24% Similarity=0.337 Sum_probs=51.8
Q ss_pred cceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCc
Q psy16377 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR 586 (1344)
Q Consensus 507 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~ 586 (1344)
|+.|++++|.++.+|..+ .++|+.|++++|.++.++ ..+|++|+.|++++|+++.++... .++|+.|++++|+
T Consensus 306 L~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~N~ 378 (754)
T PRK15370 306 ITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITVLPETL----PPTITTLDVSRNA 378 (754)
T ss_pred HHHHHhcCCccccCCccc--cccceeccccCCccccCC-hhhcCcccEEECCCCCCCcCChhh----cCCcCEEECCCCc
Confidence 444444444444443322 134444444444444333 123344555555555444443211 1245555555555
Q ss_pred ccccccccccCcccEEEcCCCcCCccC---CCCCCCCCCccEEEecCCCCc
Q psy16377 587 ILEISELSIPNSVEVLFINNNLIKSVK---PHTFFDKSNLARVDIYANDIT 634 (1344)
Q Consensus 587 l~~~~~~~~~~sL~~L~Ls~N~i~~~~---~~~f~~~~~L~~LdL~~N~l~ 634 (1344)
++.+++ .++.+|+.|++++|++.++. |..+..++++..|++.+|.++
T Consensus 379 Lt~LP~-~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 379 LTNLPE-NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCCCH-hHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 554332 23334555555555554331 112222344555555555444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.2e-16 Score=198.41 Aligned_cols=225 Identities=24% Similarity=0.314 Sum_probs=100.1
Q ss_pred ccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC
Q psy16377 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN 395 (1344)
Q Consensus 316 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 395 (1344)
...|+++++.++.++.. + .+.|+.|+|++|.++.++...+ ++|+.|++++|.++.++... ..+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-I--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcc-c--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh---hccccEEECcC
Confidence 34444544444443321 1 1245555555555555544322 34555555555554433211 12455555555
Q ss_pred CcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcc
Q psy16377 396 NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSG 475 (1344)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 475 (1344)
|.+..++. .+. ++|+.|++++|++..+|..+. ++|+.|++++|+++.++.. + .++|+.|++++|.+..++..
T Consensus 251 N~L~~LP~-~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 251 NRITELPE-RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPET 322 (754)
T ss_pred CccCcCCh-hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCcc
Confidence 55554422 221 345555555555555554332 3555555555555544321 1 12445555555555444432
Q ss_pred cccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377 476 MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555 (1344)
Q Consensus 476 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L 555 (1344)
. .++|+.|++++|.++.++. .+ .++|+.|++++|.++.+|..+ .++|+.|+|++|++..++. .+|.+|+.|
T Consensus 323 l---~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~-~l~~sL~~L 393 (754)
T PRK15370 323 L---PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPE-NLPAALQIM 393 (754)
T ss_pred c---cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCH-hHHHHHHHH
Confidence 1 1345555555555444322 11 134444555555444444332 1344444444444443322 122344444
Q ss_pred EcCCCcCCCCC
Q psy16377 556 DIHGNYISSLN 566 (1344)
Q Consensus 556 ~Ls~n~l~~l~ 566 (1344)
++++|++..++
T Consensus 394 dLs~N~L~~LP 404 (754)
T PRK15370 394 QASRNNLVRLP 404 (754)
T ss_pred hhccCCcccCc
Confidence 44444444443
No 20
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.63 E-value=9.6e-16 Score=155.91 Aligned_cols=133 Identities=25% Similarity=0.414 Sum_probs=114.9
Q ss_pred CCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccch
Q psy16377 1028 GEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRS 1107 (1344)
Q Consensus 1028 ~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~ 1107 (1344)
+.+..+.++ +|+.+.+++.|+....++++|++.+|+.+|....
T Consensus 3 dvFISys~~--~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~----------------------------------- 45 (140)
T smart00255 3 DVFISYSGK--EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL----------------------------------- 45 (140)
T ss_pred eEEEECCCC--HHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-----------------------------------
Confidence 344444333 6888888899997777789999999999998887
Q ss_pred hHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCc--ccchhhHHHHhhhccEEEeCch
Q psy16377 1108 DFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE--AESDIELKPYLKSCMKIRWGEK 1185 (1344)
Q Consensus 1108 ~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~--~~~~~~l~~~l~~~~~l~w~~~ 1185 (1344)
+.|.++|++||++|+|+|++|++|+||..|++.|++.+.+.+..++|+|.+++.++ ..++.+++.+++.+ |++|+++
T Consensus 46 ~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~-~~~w~~~ 124 (140)
T smart00255 46 EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKN-YLKWPED 124 (140)
T ss_pred HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHH-HhhcCCc
Confidence 78999999999999999999999999999999999999988889999999998863 33567999999988 9999866
Q ss_pred h---hHHHhHhhcCCC
Q psy16377 1186 R---FWERLRYAMPTC 1198 (1344)
Q Consensus 1186 ~---Fw~~l~~~~p~~ 1198 (1344)
. ||++++++||.+
T Consensus 125 ~~~~fW~~~~~~l~~~ 140 (140)
T smart00255 125 EKERFWKKALYAVPSK 140 (140)
T ss_pred hhHHHHHHHHHHhccC
Confidence 5 999999999973
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=1.5e-15 Score=177.97 Aligned_cols=275 Identities=22% Similarity=0.273 Sum_probs=140.0
Q ss_pred EEEccCCccc-ccccccccCCCceeEEEccCCcCCCC----ChhhhcCCCCCcEEEccCCCCCc-------cchhhcCCC
Q psy16377 366 TIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNI----DSKAFKNCSALKELDLSSNAIVE-------IPSALSELP 433 (1344)
Q Consensus 366 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~-------lp~~l~~l~ 433 (1344)
.|+|..+.+. ......+..+..|+.|+++++.+... .+..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3455555554 22233344555566666666665432 12233445556666666665442 223445556
Q ss_pred CccEEEccCCCCCccCcchhcCCCC---CcEEEcccCCCCCCCc----ccccCC-CCccEEEcCCCcCcccc----cccc
Q psy16377 434 FLKTLDLGENQISKIENGSFKNLQQ---LTDLRLVDNNIGNLSS----GMLYEL-PSLEVLNLSKNKIHQIE----IGTF 501 (1344)
Q Consensus 434 ~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~L~~n~l~~l~~----~~~~~l-~~L~~L~Ls~n~i~~~~----~~~~ 501 (1344)
+|+.|++++|.+....+..+..+.. |+.|++++|.++.... ..+..+ ++|+.|++++|.++... ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 6666666666655443333333333 6666666555532111 112333 55555555555554211 1123
Q ss_pred cCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCc---cccccC
Q psy16377 502 EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN---YYEIKD 573 (1344)
Q Consensus 502 ~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~---~~~l~~ 573 (1344)
..+++|+.|++++|.+++ ++..+..+++|+ .|++++|.++..+. ...+..
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~----------------------~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLE----------------------VLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC----------------------EEeccCCccChHHHHHHHHHhcc
Confidence 334445555555554442 122233334444 44554444432221 112344
Q ss_pred CCcccEEECCCCccccccccc----c---cCcccEEEcCCCcCCcc----CCCCCCCCCCccEEEecCCCCccccccccc
Q psy16377 574 GLSIKNLDASHNRILEISELS----I---PNSVEVLFINNNLIKSV----KPHTFFDKSNLARVDIYANDITKLDLTALR 642 (1344)
Q Consensus 574 ~~~L~~L~Ls~N~l~~~~~~~----~---~~sL~~L~Ls~N~i~~~----~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~ 642 (1344)
+++|+.|++++|.+++..... + ...|++|++++|.++.. ....+..+++|+.+++++|.++..+...+.
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 567888888888776422211 1 24788888888887622 123455568899999999999875433322
Q ss_pred ccCCCCCCCCCeEEcCCCcc
Q psy16377 643 LKPVPQNKTLPEFYLGGNPF 662 (1344)
Q Consensus 643 ~~~~~~~~~l~~l~l~~Np~ 662 (1344)
.........+.++++++|||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 11111113567777887774
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=8.9e-15 Score=171.32 Aligned_cols=84 Identities=33% Similarity=0.402 Sum_probs=36.4
Q ss_pred CceeEEEccCCcCCCC----ChhhhcCCCCCcEEEccCCCCC-----ccchhhcCCCCccEEEccCCCCCccCc----ch
Q psy16377 386 YVLSKLTLSNNLLVNI----DSKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQISKIEN----GS 452 (1344)
Q Consensus 386 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~ 452 (1344)
++|+.|++++|.++.. ....+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+.+... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4444555554444421 1123334445555555555544 122333444455555555555443221 12
Q ss_pred hcCCCCCcEEEcccCCC
Q psy16377 453 FKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 453 ~~~l~~L~~L~L~~n~l 469 (1344)
+..+++|+.|++++|.+
T Consensus 217 ~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 217 LASLKSLEVLNLGDNNL 233 (319)
T ss_pred hcccCCCCEEecCCCcC
Confidence 23344444444444444
No 23
>KOG0617|consensus
Probab=99.37 E-value=1.8e-14 Score=140.33 Aligned_cols=160 Identities=28% Similarity=0.486 Sum_probs=107.5
Q ss_pred CCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCC
Q psy16377 41 PTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120 (1344)
Q Consensus 41 ~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~ 120 (1344)
..+++++|.|++|++ ..+++ .++.+.+|++|++.+|+|+++|. .++.+++|+.|++.-| .+..+|.
T Consensus 31 ~~s~ITrLtLSHNKl----~~vpp-nia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmn--------rl~~lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL----TVVPP-NIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMN--------RLNILPR 96 (264)
T ss_pred chhhhhhhhcccCce----eecCC-cHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchh--------hhhcCcc
Confidence 346777888888877 33553 56777888888888888877773 5777777777777433 3455677
Q ss_pred cCCCCCCCCEEEccCCCCCc--cChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEEC
Q psy16377 121 SLDGLRELQVLNISSSNIKS--ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198 (1344)
Q Consensus 121 ~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 198 (1344)
.|+.++.|+.|||.+|++.+ +|..+| . +..|+.|.|
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff-~-----------------------------------------m~tlralyl 134 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFF-Y-----------------------------------------MTTLRALYL 134 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchh-H-----------------------------------------HHHHHHHHh
Confidence 77777777777777776652 222211 1 456666677
Q ss_pred CCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhh
Q psy16377 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGL 259 (1344)
Q Consensus 199 s~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 259 (1344)
+.|.+.-+|+ .++++++|+.|.+..|.+... |..++.++.|++|.+.+|.++.+|+.+
T Consensus 135 ~dndfe~lp~--dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 135 GDNDFEILPP--DVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cCCCcccCCh--hhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecChhh
Confidence 7777776666 367777777777777776665 666777777777777777777666643
No 24
>KOG0617|consensus
Probab=99.28 E-value=1.4e-13 Score=134.22 Aligned_cols=164 Identities=27% Similarity=0.434 Sum_probs=113.3
Q ss_pred cCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCC
Q psy16377 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL 290 (1344)
Q Consensus 211 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 290 (1344)
.+-++.+++.|-|+.|.++.+ |..++.+.+|++|++++|+++++|.++ +.+++|+.|+++.|.+..+|.+ |+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccc-cCCCchh
Confidence 345556666666777777665 335667777777777777777777655 6677777777777777666665 4788888
Q ss_pred CEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEcc
Q psy16377 291 LVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370 (1344)
Q Consensus 291 ~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 370 (1344)
++|||.+|++....+ +..|..++.|+.|.|++|.+.-++ ..++.+++|+.|.+..|.+-+++. .++.+..|++|.+.
T Consensus 105 evldltynnl~e~~l-pgnff~m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSL-PGNFFYMTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccC-CcchhHHHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcc
Confidence 888888888765433 455666777777788887776554 346777788888888877766665 35666777777777
Q ss_pred CCcccccccc
Q psy16377 371 ENRIHHITAH 380 (1344)
Q Consensus 371 ~n~l~~~~~~ 380 (1344)
+|+++.++|.
T Consensus 182 gnrl~vlppe 191 (264)
T KOG0617|consen 182 GNRLTVLPPE 191 (264)
T ss_pred cceeeecChh
Confidence 7777666553
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2e-11 Score=126.17 Aligned_cols=115 Identities=31% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCC
Q psy16377 797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876 (1344)
Q Consensus 797 f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~ 876 (1344)
+.+..+++.|+|.+|+|+.|.+-. ..+.+|+.|+|++|.|+.+.+ |..++.|++|+|++|+|+++.+.....+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S---TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 345567888888888888885422 257889999999999999874 78899999999999999998654444689999
Q ss_pred EEEccCCCCccccc-ccccCCCCCcEEEecCCcccCCCh
Q psy16377 877 VLQLDGNRLKSFRA-FDLNTNSMLRKVYLGNNPFSCSCA 914 (1344)
Q Consensus 877 ~L~L~~N~l~~~~~-~~l~~~~~L~~L~l~~Np~~C~C~ 914 (1344)
.|+|++|+|..+.. ..+..+++|+.|+|.+||+.-...
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 99999999988765 345678999999999999965555
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=1.2e-11 Score=127.86 Aligned_cols=137 Identities=28% Similarity=0.361 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCC-CCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCc
Q psy16377 764 SEQQISTVPPRI-PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842 (1344)
Q Consensus 764 s~~~l~~~p~~i-p~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~ 842 (1344)
+.+.+..+|... |..+++|+|.||.|+.|.... ..+.+|+.|++++|+|+.+. .+..++.|++|+|++|+|+.+..
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccccccccccchh-hhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcccc
Confidence 344455555533 567899999999999987532 25789999999999999995 58889999999999999999976
Q ss_pred ccccCccccceeeccccccccccC-ccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEE
Q psy16377 843 YEFDNLEKLSELYLQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVY 903 (1344)
Q Consensus 843 ~~f~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~ 903 (1344)
.....+++|++|+|++|+|..+.. ..+..+++|++|+|.+|.++.-+. .++..+|+|+.||
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 444579999999999999998866 577789999999999999886433 3344568787776
No 27
>KOG1909|consensus
Probab=99.02 E-value=7.7e-11 Score=128.65 Aligned_cols=164 Identities=27% Similarity=0.355 Sum_probs=83.2
Q ss_pred cCCCcccEEEecCCCccccchhh-------------hcCCCCccEEEccCCcccccc----cccccCCCceeEEEccCCc
Q psy16377 335 KDLVFLQRLDLRNNSIGYIEDNA-------------FLSLYNLHTIYLSENRIHHIT----AHLFNGLYVLSKLTLSNNL 397 (1344)
Q Consensus 335 ~~l~~L~~L~Ls~n~l~~i~~~~-------------f~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~ 397 (1344)
.++..|++|.|.+|.+....... ...-+.|+.+....|++.... ...|...+.|+.+.++.|.
T Consensus 117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~ 196 (382)
T KOG1909|consen 117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG 196 (382)
T ss_pred HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence 34556666666666655433322 223456666666666665432 2234445566666666665
Q ss_pred CCCCC----hhhhcCCCCCcEEEccCCCCC-----ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCC
Q psy16377 398 LVNID----SKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468 (1344)
Q Consensus 398 l~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 468 (1344)
|..-. ...|..|++|+.|||.+|.++ .+...+..++.|+.|++++|.+......+|..
T Consensus 197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~------------- 263 (382)
T KOG1909|consen 197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD------------- 263 (382)
T ss_pred ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH-------------
Confidence 54221 234555666666666666555 23344555555666666666555443332211
Q ss_pred CCCCCcccccCCCCccEEEcCCCcCccccc----ccccCCCccceEeccccCC
Q psy16377 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEI----GTFEKNKRLAAIRLDSNFL 517 (1344)
Q Consensus 469 l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l 517 (1344)
..-...|+|++|.+.+|.|+.-.. .+....+.|..|+|++|.+
T Consensus 264 ------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 001224556666666665543211 1223355666666666666
No 28
>KOG3207|consensus
Probab=98.94 E-value=1.8e-10 Score=128.92 Aligned_cols=206 Identities=25% Similarity=0.281 Sum_probs=129.0
Q ss_pred cCCCceeEEEccCCcCCCCCh-hhhcCCCCCcEEEccCCCCCc---cchhhcCCCCccEEEccCCCCCccCcch-hcCCC
Q psy16377 383 NGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVE---IPSALSELPFLKTLDLGENQISKIENGS-FKNLQ 457 (1344)
Q Consensus 383 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~ 457 (1344)
.++.+|+.+.|.++.+..... .....|++++.|||+.|-+.. +-.-...+++|+.|+|+.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345667777777766554432 345668888888888887663 3344567888888888888765433211 12467
Q ss_pred CCcEEEcccCCCCCCC-cccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh--hHhhcCCCCcEEE
Q psy16377 458 QLTDLRLVDNNIGNLS-SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLN 534 (1344)
Q Consensus 458 ~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~ 534 (1344)
+|+.|.|+.|.++.-. ......+|+|+.|++..|....+......-+..|+.|+|++|.+-+.+ .....++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7888888888884221 123456888888888888644444344445667888888888887766 4566788888888
Q ss_pred cCCCCCccccCCCc--------CCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccc
Q psy16377 535 LSENHLVWFDYAMV--------PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRIL 588 (1344)
Q Consensus 535 Ls~n~l~~~~~~~l--------p~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~ 588 (1344)
++.|.+.++..... -++|+.|+++.|+|.+......+..+.+|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88888776532211 1345555555555554444333444445555554444443
No 29
>KOG1259|consensus
Probab=98.91 E-value=2.5e-10 Score=121.00 Aligned_cols=132 Identities=24% Similarity=0.282 Sum_probs=91.9
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEc
Q psy16377 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNL 535 (1344)
Q Consensus 456 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L 535 (1344)
.+.|+.|+|++|.|+.+... ..-.|.++.|+++.|.|..+.. +..+++|+.|||++|.++.+.++-..+-++++|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 45678888888888877664 4567888888888888877754 66677888888888888887777777777888888
Q ss_pred CCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccc
Q psy16377 536 SENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI 590 (1344)
Q Consensus 536 s~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~ 590 (1344)
++|.+.++....---+|..||+++|+|..+.....+.+++.|+.+.|.+|.+.++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8877765543333345666666666666655555555556666666666655544
No 30
>KOG3207|consensus
Probab=98.91 E-value=3.6e-10 Score=126.52 Aligned_cols=202 Identities=28% Similarity=0.270 Sum_probs=98.5
Q ss_pred CcccEEEecCCCccccch-hhhcCCCCccEEEccCCcccccc--cccccCCCceeEEEccCCcCCCCChhh-hcCCCCCc
Q psy16377 338 VFLQRLDLRNNSIGYIED-NAFLSLYNLHTIYLSENRIHHIT--AHLFNGLYVLSKLTLSNNLLVNIDSKA-FKNCSALK 413 (1344)
Q Consensus 338 ~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 413 (1344)
.+|+++.|.++.+...+. .....|++++.|+|+.|-+.... ......+++|+.|+|+.|.+....... -..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 344444444444433221 12334455555555555443321 122334455555555555443221111 11345667
Q ss_pred EEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCc-ccccCCCCccEEEcCC
Q psy16377 414 ELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSK 490 (1344)
Q Consensus 414 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~ 490 (1344)
.|.|+.|+++ .+...+..+|+|+.|+|..|....+.......+..|+.|+|++|.+-..+. .....++.|..|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 7777777666 344445566777777777765333333344556667777777776644432 1244566677777777
Q ss_pred CcCcccccccc------cCCCccceEeccccCCCChh--hHhhcCCCCcEEEcCCCC
Q psy16377 491 NKIHQIEIGTF------EKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLNLSENH 539 (1344)
Q Consensus 491 n~i~~~~~~~~------~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~ 539 (1344)
+.+.++..... ...++|+.|++..|++.+.+ ..+..+.+|+.|.+..|.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 66665532111 22345555555555554433 123334444444444433
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=3.1e-09 Score=128.29 Aligned_cols=179 Identities=31% Similarity=0.435 Sum_probs=86.3
Q ss_pred cccEEECCCCCCCCCCCCccCCCCC-CCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 192 DLRILDLSHNKLRTLGDYSGITKFR-RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 192 ~L~~LdLs~n~l~~l~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
.++.|++.+|.++.++.. ...+. +|+.|++++|.+..+ |..+..+++|+.|++++|++..++... ...+.|+.|+
T Consensus 117 ~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcccccCccc--cccchhhcccccccccchhhh-hhhhhccccccccccCCchhhhhhhhh-hhhhhhhhee
Confidence 344444444444444432 22221 444444444444443 223444444444444444444444321 1344445555
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
+++|.+..++... .....|++|.+++|.+.. ....+..+.++..+.+.+|.+... +..++.+++++.|++++|.+
T Consensus 193 ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 193 LSGNKISDLPPEI-ELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred ccCCccccCchhh-hhhhhhhhhhhcCCccee---cchhhhhcccccccccCCceeeec-cchhccccccceeccccccc
Confidence 5555554444422 223335555555553211 133344455555555555554442 23345556666666666666
Q ss_pred cccchhhhcCCCCccEEEccCCccccccccc
Q psy16377 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHL 381 (1344)
Q Consensus 351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~ 381 (1344)
..+.. +..+.+++.|+++++.+....+..
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccc--ccccCccCEEeccCccccccchhh
Confidence 66654 556666666666666665554433
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.1e-09 Score=91.60 Aligned_cols=61 Identities=34% Similarity=0.475 Sum_probs=40.6
Q ss_pred CccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCC
Q psy16377 825 SSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885 (1344)
Q Consensus 825 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l 885 (1344)
++|++|+|++|+|+.+++..|.++++|++|+|++|.|+.+++++|.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666666666666666666666666666666666666666666666666654
No 33
>KOG0531|consensus
Probab=98.84 E-value=4.5e-10 Score=135.71 Aligned_cols=241 Identities=30% Similarity=0.369 Sum_probs=142.4
Q ss_pred CceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcc
Q psy16377 386 YVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465 (1344)
Q Consensus 386 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 465 (1344)
..++.+.+..|.+..+ ...+..+++|+.|++.+|.+..+...+..+++|++|++++|.|+.+.. +..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhh-hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheec
Confidence 3344444445444442 122445566777777777776665446667777777777777776643 4555667777777
Q ss_pred cCCCCCCCcccccCCCCccEEEcCCCcCccccc-ccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCcccc
Q psy16377 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFD 544 (1344)
Q Consensus 466 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~ 544 (1344)
+|.+..+.. +..++.|+.+++++|++..+.. . ...+.+++.+++.+|.+..+.+ +..+..+..+++..|.+..+.
T Consensus 149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceecc
Confidence 777766654 4557777777777777777665 2 3556677777777777765432 223334444466777766554
Q ss_pred CCCcCCC--ccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCC----CCCC
Q psy16377 545 YAMVPGN--LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP----HTFF 618 (1344)
Q Consensus 545 ~~~lp~~--L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~----~~f~ 618 (1344)
....... |+.+++++|.+..++ ..+..+..+..|+++.|++...........+..+..+.|.+..... ....
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITS 302 (414)
T ss_pred CcccchhHHHHHHhcccCcccccc--ccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccc
Confidence 3333333 677777777776653 1244456777777777777776665555556666666665542211 1133
Q ss_pred CCCCccEEEecCCCCcc
Q psy16377 619 DKSNLARVDIYANDITK 635 (1344)
Q Consensus 619 ~~~~L~~LdL~~N~l~~ 635 (1344)
..++++.+.+.+|.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccCcccc
Confidence 34455555555554443
No 34
>KOG1909|consensus
Probab=98.84 E-value=1.2e-09 Score=119.47 Aligned_cols=131 Identities=24% Similarity=0.277 Sum_probs=57.7
Q ss_pred CCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccC----cchhcCCCCCcEEEcccCCCCCCC----ccc
Q psy16377 410 SALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIE----NGSFKNLQQLTDLRLVDNNIGNLS----SGM 476 (1344)
Q Consensus 410 ~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~l~----~~~ 476 (1344)
+.|+.+....|.+.. +...|...+.|+.+.+..|.|.... ..+|..+++|+.|+|.+|.++.-. ...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 344445444444432 2223444445555555554443211 233444555555555555442211 122
Q ss_pred ccCCCCccEEEcCCCcCcccccccc-----cCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCC
Q psy16377 477 LYELPSLEVLNLSKNKIHQIEIGTF-----EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHL 540 (1344)
Q Consensus 477 ~~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l 540 (1344)
+..+++|++|++++|.+..-...+| ...++|+.|.+.+|.++. +...+...+.|..|+|++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3444555555555555543322221 124555555555555542 122233345555555555544
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=6e-09 Score=131.59 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=88.7
Q ss_pred ccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccC
Q psy16377 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882 (1344)
Q Consensus 803 L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~ 882 (1344)
++.|+|++|++....+..+..+++|+.|+|++|+++...+..|..+++|+.|+|++|+|+...+..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55667777777766677788888888888888888876677788888888888888888877778888888999999999
Q ss_pred CCCcccccccccC-CCCCcEEEecCCcccCCCh
Q psy16377 883 NRLKSFRAFDLNT-NSMLRKVYLGNNPFSCSCA 914 (1344)
Q Consensus 883 N~l~~~~~~~l~~-~~~L~~L~l~~Np~~C~C~ 914 (1344)
|+++...+..+.. ...+..+++.+|+..|.+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9888654444543 2456789999999999765
No 36
>KOG0531|consensus
Probab=98.83 E-value=4.8e-10 Score=135.48 Aligned_cols=248 Identities=30% Similarity=0.299 Sum_probs=187.5
Q ss_pred cCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEE
Q psy16377 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486 (1344)
Q Consensus 407 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 486 (1344)
..+..++.+.+..|.+..+-..+..+++|+.|++.+|+|..+... +..+++|+.|++++|.|+.+.. +..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhh
Confidence 456778888899999988656688899999999999999988642 6778999999999999988875 6778889999
Q ss_pred EcCCCcCcccccccccCCCccceEeccccCCCChhhH-hhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCC
Q psy16377 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV-FTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSL 565 (1344)
Q Consensus 487 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l 565 (1344)
++++|.|..+. .+..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+..+........+..+++..|.++.+
T Consensus 146 ~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 146 NLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eeccCcchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec
Confidence 99999999875 455588999999999999988764 588999999999999988766555555666678889988877
Q ss_pred CccccccCCCcccEEECCCCccccc-ccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccccccccc
Q psy16377 566 NNYYEIKDGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644 (1344)
Q Consensus 566 ~~~~~l~~~~~L~~L~Ls~N~l~~~-~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~ 644 (1344)
........+ .|+.+++++|.+... ........+..|++.+|++.... .+.....+..+....|.+..... .....
T Consensus 224 ~~l~~~~~~-~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 299 (414)
T KOG0531|consen 224 EGLNELVML-HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA-ISQEY 299 (414)
T ss_pred cCcccchhH-HHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh-hhccc
Confidence 653222111 389999999999877 44444567889999999887664 24455667777777777664311 11111
Q ss_pred CCCCCCCCCeEEcCCCccc
Q psy16377 645 PVPQNKTLPEFYLGGNPFD 663 (1344)
Q Consensus 645 ~~~~~~~l~~l~l~~Np~~ 663 (1344)
..+....++.+++.+||..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccccccccccccccCccc
Confidence 2344566777788888753
No 37
>KOG0532|consensus
Probab=98.80 E-value=2.9e-10 Score=130.76 Aligned_cols=216 Identities=27% Similarity=0.354 Sum_probs=173.6
Q ss_pred EEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcCh
Q psy16377 154 TLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233 (1344)
Q Consensus 154 ~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 233 (1344)
.|.|++-+++.++..++. -.+..-...||+.|++..+|. .+..+..|+.|.|..|.+..+ |
T Consensus 54 ~l~Ls~rrlk~fpr~a~~----------------~~ltdt~~aDlsrNR~~elp~--~~~~f~~Le~liLy~n~~r~i-p 114 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAAS----------------YDLTDTVFADLSRNRFSELPE--EACAFVSLESLILYHNCIRTI-P 114 (722)
T ss_pred ccccccchhhcCCCcccc----------------ccccchhhhhccccccccCch--HHHHHHHHHHHHHHhccceec-c
Confidence 455666666666655442 125667789999999999998 478888999999999999876 7
Q ss_pred hhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCC
Q psy16377 234 NAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL 313 (1344)
Q Consensus 234 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l 313 (1344)
.+++++..|+.|+|+.|++..+|..++ .--|+.|.+++|+++.+|..+ +....|..||.+.|++.. + +..++++
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~s--l-psql~~l 188 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQS--L-PSQLGYL 188 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhh--c-hHHhhhH
Confidence 889999999999999999999998874 235999999999999999887 688899999999999876 3 6778899
Q ss_pred CcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccc--cCCCceeEE
Q psy16377 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF--NGLYVLSKL 391 (1344)
Q Consensus 314 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L 391 (1344)
.+|+.|++..|.+..++++. .. -.|..||+++|++..++. .|..+.+|++|-|.+|.+..-+.... +...--++|
T Consensus 189 ~slr~l~vrRn~l~~lp~El-~~-LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEEL-CS-LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHH-hC-CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence 99999999999998886653 33 468999999999999987 68999999999999999987655432 223344666
Q ss_pred EccCCc
Q psy16377 392 TLSNNL 397 (1344)
Q Consensus 392 ~Ls~n~ 397 (1344)
+...|+
T Consensus 266 ~~qA~q 271 (722)
T KOG0532|consen 266 STQACQ 271 (722)
T ss_pred cchhcc
Confidence 666663
No 38
>KOG1259|consensus
Probab=98.78 E-value=2.1e-09 Score=114.13 Aligned_cols=129 Identities=25% Similarity=0.347 Sum_probs=59.2
Q ss_pred CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN 320 (1344)
Q Consensus 241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~ 320 (1344)
.|++||||+|.|+.+.+++ .-.+.++.|+++.|.+..+.. ++.+++|+.|||++|.++. + ...-..+-+++.|.
T Consensus 285 ~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~--~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE--C-VGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh--hhhcccceEeecccchhHh--h-hhhHhhhcCEeeee
Confidence 3444444444444444333 334444555555554444433 3444555555555554433 1 11222334455555
Q ss_pred ccCCCCCccccccccCCCcccEEEecCCCccccch-hhhcCCCCccEEEccCCccccc
Q psy16377 321 LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED-NAFLSLYNLHTIYLSENRIHHI 377 (1344)
Q Consensus 321 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~ 377 (1344)
|++|.+..+. .+..+.+|..||+++|+|..+.. ..++++|.|+.+.|.+|++.++
T Consensus 359 La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5555444332 13444555555555555543322 2344555555555555555443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5e-09 Score=89.29 Aligned_cols=61 Identities=33% Similarity=0.441 Sum_probs=45.9
Q ss_pred CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecccccc
Q psy16377 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861 (1344)
Q Consensus 801 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 861 (1344)
++|+.|++++|+|+.+++.+|.++++|++|+|++|+++.++++.|.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777777777777777777777777777777777777777777777777765
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=1.3e-08 Score=122.95 Aligned_cols=195 Identities=30% Similarity=0.362 Sum_probs=103.9
Q ss_pred EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCC-CCcEEEcccCCCCCCCcccccCCCCccEEEcCCCc
Q psy16377 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ-QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492 (1344)
Q Consensus 414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~ 492 (1344)
.+++..+.+..-...+..++.++.|++.+|.++.+.+. ..... +|+.|++++|.+..++. .+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccCCc-
Confidence 45555555533333334445555555555555554431 12221 45555555555544421 1334444444444444
Q ss_pred CcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCC-CcCCCccEEEcCCCcCCCCCccccc
Q psy16377 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA-MVPGNLKWLDIHGNYISSLNNYYEI 571 (1344)
Q Consensus 493 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-~lp~~L~~L~Ls~n~l~~l~~~~~l 571 (1344)
.+.+++.....++.|+.|++++|++..++.. ..+..|+.|.+++|.+..... .+
T Consensus 174 -----------------------~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~ 228 (394)
T COG4886 174 -----------------------DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS--SL 228 (394)
T ss_pred -----------------------hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch--hh
Confidence 4444444433445555555555555444433 244445555555553222221 23
Q ss_pred cCCCcccEEECCCCcccc-cccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccc
Q psy16377 572 KDGLSIKNLDASHNRILE-ISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDL 638 (1344)
Q Consensus 572 ~~~~~L~~L~Ls~N~l~~-~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~ 638 (1344)
..+.++..+.+.+|++.. ......+.+++.|++++|.++.+.. +....+|+.+++++|.+.....
T Consensus 229 ~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 345566667777777766 2333444568888888888877655 7777888888888888776544
No 41
>KOG0532|consensus
Probab=98.70 E-value=7.8e-10 Score=127.29 Aligned_cols=175 Identities=22% Similarity=0.392 Sum_probs=84.4
Q ss_pred CCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcC
Q psy16377 69 NIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCS 148 (1344)
Q Consensus 69 ~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 148 (1344)
.+.--...||+.|++..+|. .++.+..|..|.|+.|.+ ..+|..+.++..|+.|||+.|.++.+|.. ++.
T Consensus 73 ~ltdt~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~--------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~ 142 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPE-EACAFVSLESLILYHNCI--------RTIPEAICNLEALTFLDLSSNQLSHLPDG-LCD 142 (722)
T ss_pred cccchhhhhccccccccCch-HHHHHHHHHHHHHHhccc--------eecchhhhhhhHHHHhhhccchhhcCChh-hhc
Confidence 34444556666666666663 344555555555544333 23555566666666666666666655554 333
Q ss_pred CCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCC
Q psy16377 149 LANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228 (1344)
Q Consensus 149 l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i 228 (1344)
|+ |+.|.+++|+++.++.. .+....|..||.+.|++..++. .++++.+|+.|++..|++
T Consensus 143 lp-Lkvli~sNNkl~~lp~~------------------ig~~~tl~~ld~s~nei~slps--ql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLTSLPEE------------------IGLLPTLAHLDVSKNEIQSLPS--QLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred Cc-ceeEEEecCccccCCcc------------------cccchhHHHhhhhhhhhhhchH--HhhhHHHHHHHHHhhhhh
Confidence 32 55555555555544331 1124445555555555555444 244444455555444444
Q ss_pred CCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277 (1344)
Q Consensus 229 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~ 277 (1344)
..+ |..++.| .|..||++.|++..||.. |.+++.|++|.|.+|.+.
T Consensus 202 ~~l-p~El~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 202 EDL-PEELCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhC-CHHHhCC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCC
Confidence 444 2233322 344444444444444432 234444444444444433
No 42
>KOG4658|consensus
Probab=98.68 E-value=1.6e-08 Score=130.14 Aligned_cols=108 Identities=25% Similarity=0.325 Sum_probs=61.2
Q ss_pred CCcccEEECCCCC--CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCc
Q psy16377 190 GMDLRILDLSHNK--LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS 267 (1344)
Q Consensus 190 l~~L~~LdLs~n~--l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~ 267 (1344)
+++|++|-+..|. +..++.. .|..++.|++|||++|.-.+..|..+++|-+|++|+++++.+..+|.++ .+++.|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhh
Confidence 3456666555554 3344332 3555666666666665544455666666666666666666666666553 5566666
Q ss_pred EEEcccCcccccChhhhcCCCCCCEEEccCCC
Q psy16377 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299 (1344)
Q Consensus 268 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~ 299 (1344)
+|++..+......++....+.+|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 66666554333334444556666666665443
No 43
>KOG4658|consensus
Probab=98.51 E-value=5.8e-08 Score=124.99 Aligned_cols=128 Identities=24% Similarity=0.346 Sum_probs=77.0
Q ss_pred CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC--CCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCC-C
Q psy16377 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS--IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHN-K 202 (1344)
Q Consensus 126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n-~ 202 (1344)
...+...+-+|.+..++... .+++|++|-+..|. +..++...| ..++.|++|||++| .
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff-----------------~~m~~LrVLDLs~~~~ 583 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFF-----------------RSLPLLRVLDLSGNSS 583 (889)
T ss_pred hheeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhcCHHHH-----------------hhCcceEEEECCCCCc
Confidence 45555666666555555432 34566666666664 333332222 22667777777765 4
Q ss_pred CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCc
Q psy16377 203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275 (1344)
Q Consensus 203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~ 275 (1344)
+..+|. .++.+-+|+.|+|+++.+..+ |..+++|..|.+|++..+.....+++....+.+|++|.+....
T Consensus 584 l~~LP~--~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 584 LSKLPS--SIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCcCCh--HHhhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 556665 467777777777777777654 6667777777777777665444445555667777777765543
No 44
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.16 E-value=1.4e-06 Score=118.58 Aligned_cols=82 Identities=21% Similarity=0.411 Sum_probs=64.7
Q ss_pred EccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCCCccccccCC--cc
Q psy16377 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLN--ST 956 (1344)
Q Consensus 879 ~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~~~~~~~~~~--~~ 956 (1344)
||++|+|+.|++..|..+++|+.|+|++|||.|||+ +.||+.|++++...+.....+.|..|....+. ...++. +.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~-L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~-~L~~l~~~d~ 78 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG-LARLPRWAEEKGVKVRQPEAALCAGPGALAGQ-PLLGIPLLDS 78 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc-cHHHHHHHHhcCccccCCcccCCCCChHHCCC-CcccCCcccC
Confidence 578899999999989889999999999999999999 79999999988777777788999998754332 233333 33
Q ss_pred cccCcc
Q psy16377 957 TCTEYY 962 (1344)
Q Consensus 957 ~C~~~~ 962 (1344)
.|..++
T Consensus 79 ~C~~~y 84 (2740)
T TIGR00864 79 GCDEEY 84 (2740)
T ss_pred CCCCcc
Confidence 466443
No 45
>KOG2120|consensus
Probab=98.15 E-value=9.6e-08 Score=102.03 Aligned_cols=86 Identities=24% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC-CCCCC-hhhhcCCCCCc
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH-LVSLP-EGLFSSCRDIS 267 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~-~~~f~~l~~L~ 267 (1344)
-+.|++||||+..|+.-.-...++.|.+|+.|.|.++++.+-+...+++-.+|+.|+|+.+. +++.. .-+|.+|+.|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35689999998887642211146788899999999999988777888888889999988863 33221 12344444555
Q ss_pred EEEcccCc
Q psy16377 268 EIYAQKNS 275 (1344)
Q Consensus 268 ~L~L~~n~ 275 (1344)
+|+|+.|.
T Consensus 264 ~LNlsWc~ 271 (419)
T KOG2120|consen 264 ELNLSWCF 271 (419)
T ss_pred hcCchHhh
Confidence 55544443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=6.4e-06 Score=104.32 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=56.1
Q ss_pred CcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC
Q psy16377 412 LKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490 (1344)
Q Consensus 412 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 490 (1344)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+....+..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455555555554 4555555555555555555555555555555555555555555555322223355556666666666
Q ss_pred CcCcccccccccC-CCccceEeccccC
Q psy16377 491 NKIHQIEIGTFEK-NKRLAAIRLDSNF 516 (1344)
Q Consensus 491 n~i~~~~~~~~~~-l~~L~~L~L~~n~ 516 (1344)
|++++..+..+.. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 6555544444433 1334556666554
No 47
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.10 E-value=1e-06 Score=83.91 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=62.2
Q ss_pred chhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus 1036 ~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
+|.+|| +.|...|+. .||++++.. |..+|.... +.|.++++
T Consensus 8 ~D~~~a-~~l~~~L~~--~g~~v~~d~-~~~~g~~~~-----------------------------------~~i~~~i~ 48 (102)
T PF13676_consen 8 EDREFA-ERLAERLES--AGIRVFLDR-DIPPGEDWR-----------------------------------EEIERAIE 48 (102)
T ss_dssp GGCCCH-HHHHHHHHH--TT--EE-GG-EE-TTS-HH-----------------------------------CCCHHCCT
T ss_pred CcHHHH-HHHHHHHhh--cCCEEEEEE-eCCCCCCHH-----------------------------------HHHHHHHH
Confidence 455555 445778875 478888774 999999888 78999999
Q ss_pred hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCC
Q psy16377 1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIV 1161 (1344)
Q Consensus 1116 ~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~ 1161 (1344)
+|+.+|+++|++|++++||+.|+..|. +..+++|+|.+++.
T Consensus 49 ~s~~~i~~~S~~~~~s~~~~~E~~~a~-----~~~~~iipv~~~~~ 89 (102)
T PF13676_consen 49 RSDCVIVLLSPNYLKSPWCRFELGAAW-----KRGKPIIPVRLDPC 89 (102)
T ss_dssp TEEEEEEEEEHHHHCTHHHHHHHHHHH-----CTSESEEEEECSGG
T ss_pred hCCEEEEEECcccccChHHHHHHHHHH-----HCCCEEEEEEECCc
Confidence 999999999999999999999999883 24457999987643
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.09 E-value=6.1e-06 Score=82.36 Aligned_cols=109 Identities=20% Similarity=0.360 Sum_probs=48.9
Q ss_pred cCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccC
Q psy16377 792 IPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNA 871 (1344)
Q Consensus 792 l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~ 871 (1344)
|+..+|.++.+|+.+.+.+ .+..|...+|.++++|+.+++.++ +..+....|.++++|+.+.+.+ .+..++...|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4455555555555555553 455555555555555555555553 5555555555555555555543 555555555555
Q ss_pred CCCCCEEEccCCCCcccccccccCCCCCcEEEec
Q psy16377 872 LISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905 (1344)
Q Consensus 872 l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~ 905 (1344)
+++|+.+++..| +..++...|... .++.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555555544 555555555544 45555443
No 49
>KOG1859|consensus
Probab=98.09 E-value=5.8e-08 Score=114.70 Aligned_cols=191 Identities=25% Similarity=0.375 Sum_probs=130.7
Q ss_pred CCcCCCCCCCCEEEccCCCCCccChhhhcCC-CCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEE
Q psy16377 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSL-ANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILD 197 (1344)
Q Consensus 119 p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 197 (1344)
|-++-..++|++|.|.++.|.... + +..+ ..|++|... |.+..+... |+ ...+.+..+- .--.|...+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~-G-L~~lr~qLe~LIC~-~Sl~Al~~v-~a--scggd~~ns~-----~Wn~L~~a~ 170 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK-G-LQELRHQLEKLICH-NSLDALRHV-FA--SCGGDISNSP-----VWNKLATAS 170 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh-h-hHHHHHhhhhhhhh-ccHHHHHHH-HH--Hhccccccch-----hhhhHhhhh
Confidence 445566778888988888776521 1 1111 235555433 222221110 11 0011111110 134688889
Q ss_pred CCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377 198 LSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277 (1344)
Q Consensus 198 Ls~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~ 277 (1344)
.++|.+..+.. ++.-++.|+.|+|+.|++.+. +.+..|+.|++|||++|.+..+|.-.-.+|. |..|.+.+|.++
T Consensus 171 fsyN~L~~mD~--SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 171 FSYNRLVLMDE--SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT 245 (1096)
T ss_pred cchhhHHhHHH--HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence 99999887765 577889999999999999887 3788999999999999999988875545555 999999999888
Q ss_pred ccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc
Q psy16377 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR 328 (1344)
Q Consensus 278 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 328 (1344)
.+-. +.++.+|+.||+++|-+.+. -....+..+..|+.|+|.||.+.-
T Consensus 246 tL~g--ie~LksL~~LDlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 246 TLRG--IENLKSLYGLDLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhh--HHhhhhhhccchhHhhhhcc-hhhhHHHHHHHHHHHhhcCCcccc
Confidence 7754 47889999999999988763 223445667788888998887653
No 50
>KOG1644|consensus
Probab=98.06 E-value=4.4e-06 Score=85.31 Aligned_cols=124 Identities=22% Similarity=0.215 Sum_probs=88.5
Q ss_pred EEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccc
Q psy16377 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860 (1344)
Q Consensus 781 ~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 860 (1344)
+++|.+.++..+..- =..+.....++|++|.|..+. .|.+++.|.+|.|++|+|+.|.+..-.-+++|+.|.|.+|.
T Consensus 23 e~~LR~lkip~ienl-g~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 23 ELDLRGLKIPVIENL-GATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccchhhc-cccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 455555555544431 012356777888888887774 47788888888888888888888777778888888888888
Q ss_pred cccccC-ccccCCCCCCEEEccCCCCccc---ccccccCCCCCcEEEecCC
Q psy16377 861 IEYIAN-GTFNALISLQVLQLDGNRLKSF---RAFDLNTNSMLRKVYLGNN 907 (1344)
Q Consensus 861 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~---~~~~l~~~~~L~~L~l~~N 907 (1344)
|..+.. ..+..+|+|++|.+-+|.++.- ...++-.+++|+.||..+-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 877754 5566778888888888877663 3344556688888887663
No 51
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.01 E-value=1.3e-05 Score=79.93 Aligned_cols=117 Identities=17% Similarity=0.304 Sum_probs=79.3
Q ss_pred CccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecc
Q psy16377 778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ 857 (1344)
Q Consensus 778 ~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 857 (1344)
.++.+.+.. .+..|+..+|.++.+|+.+.+.++ +..+...+|.++++|+.+++.+ .+..++...|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 467777764 688999999999999999999885 9999999999999999999976 8888999999999999999998
Q ss_pred ccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR 900 (1344)
Q Consensus 858 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~ 900 (1344)
.+ ++.++...|..+ +|+.+.+.+ .+..++...|.++++|+
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 76 999999999998 999999986 78888888888776653
No 52
>KOG1859|consensus
Probab=97.97 E-value=4.6e-07 Score=107.27 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=93.3
Q ss_pred CCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCC
Q psy16377 797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876 (1344)
Q Consensus 797 f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~ 876 (1344)
+.-++.|+.|+|++|+++.+. .+..|+.|+.|||++|.++.++.....++. |..|.|++|.++++- .+.++.+|+
T Consensus 183 Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhh
Confidence 344577888888888888885 677888999999999999888876666666 999999999888874 456788899
Q ss_pred EEEccCCCCcccccccc-cCCCCCcEEEecCCcccCCChhhHHHHHHHh
Q psy16377 877 VLQLDGNRLKSFRAFDL-NTNSMLRKVYLGNNPFSCSCATLQELQTWII 924 (1344)
Q Consensus 877 ~L~L~~N~l~~~~~~~l-~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~ 924 (1344)
-|||+.|-|....+-.+ ..+..|..|+|.|||+-|.=..-+.-.+++.
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~ 306 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLH 306 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhc
Confidence 99999998877554222 2346788999999999887654333445554
No 53
>PLN03194 putative disease resistance protein; Provisional
Probab=97.97 E-value=2.8e-05 Score=79.59 Aligned_cols=92 Identities=8% Similarity=0.104 Sum_probs=74.9
Q ss_pred CccCCccCCCCchh--HHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccC
Q psy16377 1025 KHFGEDREKLPKDE--EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQT 1102 (1344)
Q Consensus 1025 ~~~~~~~~~~~~d~--~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~ 1102 (1344)
+.||-+.+.-.+|. .|+ ..|...|+. .|++.++-+.++.+|..+.
T Consensus 25 ~~yDVFISFrG~DtR~~Fv-shL~~aL~~--~GI~vF~D~~el~~G~~i~------------------------------ 71 (187)
T PLN03194 25 KPCDVFINHRGIDTKRTIA-TLLYDHLSR--LNLRPFLDNKNMKPGDKLF------------------------------ 71 (187)
T ss_pred CCCcEEEeCCCccccccHH-HHHHHHHHH--CCCEEEEcCccccCCCcHH------------------------------
Confidence 34454544444553 577 677899986 4699999888999999998
Q ss_pred CccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377 1103 EWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus 1103 ~w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
+.|..||+.||..|+|+|++|..|.||..|+-.++. ...+||+|+|+
T Consensus 72 -----~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e-----~~~~ViPIFY~ 118 (187)
T PLN03194 72 -----DKINSAIRNCKVGVAVFSPRYCESYFCLHELALIME-----SKKRVIPIFCD 118 (187)
T ss_pred -----HHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHH-----cCCEEEEEEec
Confidence 789999999999999999999999999999987764 34689999986
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=3.4e-05 Score=89.59 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=44.8
Q ss_pred ccceEecccc-CCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCc-CCCCCccccccCCCcccEEECC
Q psy16377 506 RLAAIRLDSN-FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNY-ISSLNNYYEIKDGLSIKNLDAS 583 (1344)
Q Consensus 506 ~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~-l~~l~~~~~l~~~~~L~~L~Ls 583 (1344)
+|+.|++++| .+..+| .+|+.|+++.+.+..+ ..+|++|+.|.+.+++ ....+....+. .+|+.|+++
T Consensus 95 nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L--~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is 164 (426)
T PRK15386 95 GLEKLTVCHCPEISGLP------ESVRSLEIKGSATDSI--KNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLT 164 (426)
T ss_pred hhhheEccCcccccccc------cccceEEeCCCCCccc--ccCcchHhheeccccccccccccccccC--CcccEEEec
Confidence 4555555554 333333 2355555555444322 4566666666664322 11100000011 357777777
Q ss_pred CCcccccccccccCcccEEEcCCC
Q psy16377 584 HNRILEISELSIPNSVEVLFINNN 607 (1344)
Q Consensus 584 ~N~l~~~~~~~~~~sL~~L~Ls~N 607 (1344)
+|....+ +..+|.+|+.|+++.+
T Consensus 165 ~c~~i~L-P~~LP~SLk~L~ls~n 187 (426)
T PRK15386 165 GCSNIIL-PEKLPESLQSITLHIE 187 (426)
T ss_pred CCCcccC-cccccccCcEEEeccc
Confidence 7665543 2346677777777665
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=3e-06 Score=89.72 Aligned_cols=200 Identities=23% Similarity=0.286 Sum_probs=94.7
Q ss_pred CCCCCCCCEEEccCCCCCCcChhhhc----CCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCC
Q psy16377 212 ITKFRRLQNLHLENNEISQIAPNAFV----ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKL 287 (1344)
Q Consensus 212 l~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l 287 (1344)
+..+..+..++||+|.|......+++ +-.+|+..+++.-........+..+ +.-+ ...+.+|
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~-------------L~~L-l~aLlkc 91 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSN-------------LVML-LKALLKC 91 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHH-------------HHHH-HHHHhcC
Confidence 34466677777777777654333333 3345555555543222111111110 0011 1123566
Q ss_pred CCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhh---------
Q psy16377 288 EQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF--------- 358 (1344)
Q Consensus 288 ~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f--------- 358 (1344)
++|+.++||.|.+..... ..+ ...+++-+.|.+|.|++|.+..+..+.+
T Consensus 92 p~l~~v~LSDNAfg~~~~--e~L--------------------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~ 149 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFP--EEL--------------------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY 149 (388)
T ss_pred CcceeeeccccccCcccc--hHH--------------------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH
Confidence 777777777776654211 111 0112233444455555554443332221
Q ss_pred ----cCCCCccEEEccCCccccccc----ccccCCCceeEEEccCCcCCCCCh-----hhhcCCCCCcEEEccCCCCCc-
Q psy16377 359 ----LSLYNLHTIYLSENRIHHITA----HLFNGLYVLSKLTLSNNLLVNIDS-----KAFKNCSALKELDLSSNAIVE- 424 (1344)
Q Consensus 359 ----~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~- 424 (1344)
++-|.|+.+.+..|++..-+. ..+.....|+.+.+..|.|..... ..+..+.+|+.|||.+|.++.
T Consensus 150 nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 150 NKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred HhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 234667777777776643322 222333456666666666543211 122335566666666666552
Q ss_pred ----cchhhcCCCCccEEEccCCCCCc
Q psy16377 425 ----IPSALSELPFLKTLDLGENQISK 447 (1344)
Q Consensus 425 ----lp~~l~~l~~L~~L~Ls~n~i~~ 447 (1344)
+...+...+.|+.|.+.+|-++.
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhcc
Confidence 22334445556666666665444
No 56
>KOG1644|consensus
Probab=97.82 E-value=2e-05 Score=80.59 Aligned_cols=105 Identities=25% Similarity=0.271 Sum_probs=87.2
Q ss_pred CccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEcc
Q psy16377 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881 (1344)
Q Consensus 802 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~ 881 (1344)
.-+.++|.+.+|..+.+ --..+.+...+||++|.+..+.. |..++.|..|.|++|+|+.|++..-..+++|+.|.|.
T Consensus 20 ~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccccchhh-ccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 35677888888877765 12234678899999999998864 8899999999999999999999877778999999999
Q ss_pred CCCCccccc-ccccCCCCCcEEEecCCcc
Q psy16377 882 GNRLKSFRA-FDLNTNSMLRKVYLGNNPF 909 (1344)
Q Consensus 882 ~N~l~~~~~-~~l~~~~~L~~L~l~~Np~ 909 (1344)
+|.|..+.+ .-+..+++|++|.+-+||.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCch
Confidence 999888654 2355679999999999997
No 57
>KOG2120|consensus
Probab=97.81 E-value=1.2e-06 Score=93.95 Aligned_cols=128 Identities=21% Similarity=0.221 Sum_probs=59.3
Q ss_pred CcEEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCC-cccccCCCCccEEE
Q psy16377 412 LKELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLS-SGMLYELPSLEVLN 487 (1344)
Q Consensus 412 L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~-~~~~~~l~~L~~L~ 487 (1344)
|+.|||+...++ .+...+..|.+|+.|.|.++++.+.....++...+|+.|+++.+.- +.-. .-.+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444444443 2333344445555555555555444444444445555555554322 1111 12345566666666
Q ss_pred cCCCcCcccccccc-cC-CCccceEeccccC----CCChhhHhhcCCCCcEEEcCCCC
Q psy16377 488 LSKNKIHQIEIGTF-EK-NKRLAAIRLDSNF----LTDINGVFTYLAQLLWLNLSENH 539 (1344)
Q Consensus 488 Ls~n~i~~~~~~~~-~~-l~~L~~L~L~~n~----l~~l~~~~~~l~~L~~L~Ls~n~ 539 (1344)
++.|.+......+. .. -++|+.|+|+|+. .+.+.-....+++|..||||+|.
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 66664432211110 00 1345666666552 12333344566667777766653
No 58
>KOG4579|consensus
Probab=97.81 E-value=6.3e-07 Score=85.43 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=74.7
Q ss_pred CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEc
Q psy16377 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880 (1344)
Q Consensus 801 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 880 (1344)
..|+..+|++|.+...++.--...+.++.|+|++|.|+.++.. |..++.|+.|+++.|.|...+.-.+ .+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHH-HHHhHHHhcC
Confidence 4455556666666555443333445666777777777777554 7777777777777777776654333 3777777777
Q ss_pred cCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHH
Q psy16377 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922 (1344)
Q Consensus 881 ~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w 922 (1344)
.+|.+.-++...| .-.....++++++||.-.|. ..++.|
T Consensus 131 ~~na~~eid~dl~-~s~~~al~~lgnepl~~~~~--~klqa~ 169 (177)
T KOG4579|consen 131 PENARAEIDVDLF-YSSLPALIKLGNEPLGDETK--KKLQAL 169 (177)
T ss_pred CCCccccCcHHHh-ccccHHHHHhcCCcccccCc--cccccc
Confidence 7777777776633 22334456679999999997 334444
No 59
>KOG2982|consensus
Probab=97.80 E-value=1.1e-05 Score=86.75 Aligned_cols=202 Identities=23% Similarity=0.246 Sum_probs=111.4
Q ss_pred ceeEEEccCCcCCCCCh-hhh-cCCCCCcEEEccCCCCC---ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcE
Q psy16377 387 VLSKLTLSNNLLVNIDS-KAF-KNCSALKELDLSSNAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD 461 (1344)
Q Consensus 387 ~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 461 (1344)
.++-|.+.++.+..... ..| ..++.+++|||.+|.++ ++...+.++|.|++|+|+.|++.......-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34455555655544332 122 23678888999999887 45556678899999999999876643221135678888
Q ss_pred EEcccCCC--CCCCcccccCCCCccEEEcCCCcCccccc--cccc-CCCccceEeccccCCCC---hhhHhhcCCCCcEE
Q psy16377 462 LRLVDNNI--GNLSSGMLYELPSLEVLNLSKNKIHQIEI--GTFE-KNKRLAAIRLDSNFLTD---INGVFTYLAQLLWL 533 (1344)
Q Consensus 462 L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~-~l~~L~~L~L~~n~l~~---l~~~~~~l~~L~~L 533 (1344)
|.|.+..+ +... ..+..+|.++.|.++.|.+..+.. .... ..+.+++|.+..|.... +...-.-.+++..+
T Consensus 126 lVLNgT~L~w~~~~-s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQST-SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhh-hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 88888777 3332 235678888888888885443321 1111 12334444444442211 11111224455555
Q ss_pred EcCCCCCccccCC---CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccc
Q psy16377 534 NLSENHLVWFDYA---MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE 589 (1344)
Q Consensus 534 ~Ls~n~l~~~~~~---~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~ 589 (1344)
-+..|.+.+.... .--+.+..|+|+.++|.+....-.+..++.|..|.+++|.+.+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5555544432110 0112344566666666655544445555666666666665544
No 60
>KOG2982|consensus
Probab=97.76 E-value=1.9e-05 Score=84.91 Aligned_cols=202 Identities=20% Similarity=0.228 Sum_probs=113.9
Q ss_pred cccEEEecCCCccccchhh-h-cCCCCccEEEccCCccccc--ccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcE
Q psy16377 339 FLQRLDLRNNSIGYIEDNA-F-LSLYNLHTIYLSENRIHHI--TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE 414 (1344)
Q Consensus 339 ~L~~L~Ls~n~l~~i~~~~-f-~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 414 (1344)
.++.|.+.++.|..+.+.. | ..++.++.++|.+|.+++. ....+.+++.|+.|+|+.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444555555555443321 1 2345677777777776643 2334566777777777777765433221124567777
Q ss_pred EEccCCCCC--ccchhhcCCCCccEEEccCCCCCccC--cchhcC-CCCCcEEEcccCCCC---CCCcccccCCCCccEE
Q psy16377 415 LDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIE--NGSFKN-LQQLTDLRLVDNNIG---NLSSGMLYELPSLEVL 486 (1344)
Q Consensus 415 L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L 486 (1344)
|-|.+..+. .....+..+|.++.|.++.|.+.... ...... -+.+++|.+..|... ++. ..-.-+|++..+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchhe
Confidence 777777654 44455667777777777777433211 111111 123444444444321 000 001235677777
Q ss_pred EcCCCcCccccc-ccccCCCccceEeccccCCCChh--hHhhcCCCCcEEEcCCCCCc
Q psy16377 487 NLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 487 ~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
-+..|.+..... ..+...+.+..|.|+.+++.+.. ..+.++++|..|.++++.+.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777777765533 34556677777888888877654 35667788888888877765
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.6e-05 Score=60.18 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=17.0
Q ss_pred ccceeeccccccccccCccccCCCCCCEEEccCCCCccc
Q psy16377 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF 888 (1344)
Q Consensus 850 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 888 (1344)
+|++|+|++|+|+.+++ .+..+++|++|+|++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444433 244445555555555554443
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=3.2e-05 Score=60.47 Aligned_cols=39 Identities=41% Similarity=0.504 Sum_probs=22.1
Q ss_pred ccceeecccccccccCcccccCccccceeecccccccccc
Q psy16377 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865 (1344)
Q Consensus 826 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~ 865 (1344)
+|++|+|++|+|+.+++ .|.+|++|+.|+|++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence 45566666666666544 4556666666666666666554
No 63
>KOG4579|consensus
Probab=97.61 E-value=6e-06 Score=78.94 Aligned_cols=90 Identities=28% Similarity=0.400 Sum_probs=43.5
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
...|+..+|++|.+..+|.. .-...+.++.|+|++|.|+++ |..++.++.|+.|+++.|.+...|.-++. +.+|-.|
T Consensus 52 ~~el~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKK-FTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDML 128 (177)
T ss_pred CceEEEEecccchhhhCCHH-Hhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccchHHHHH-HHhHHHh
Confidence 34455555555555555443 222333455555555555554 33455555555555555555544443322 4445555
Q ss_pred EcccCcccccChh
Q psy16377 270 YAQKNSLVELSRG 282 (1344)
Q Consensus 270 ~L~~n~l~~l~~~ 282 (1344)
+..+|.+..++..
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 5555544444443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.54 E-value=8.6e-05 Score=79.01 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=82.0
Q ss_pred hcCCCCccEEEccCCCCCccCcc----hhcCCCCCcEEEcccCCCCCCCcccc-------------cCCCCccEEEcCCC
Q psy16377 429 LSELPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDNNIGNLSSGML-------------YELPSLEVLNLSKN 491 (1344)
Q Consensus 429 l~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~-------------~~l~~L~~L~Ls~n 491 (1344)
+..||.|+..+||+|-+....+. .++.-+.|+.|.|++|.++.+..+-+ .+-|.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 44556666666666655443322 23344556666666666544432221 23467777777777
Q ss_pred cCccccc----ccccCCCccceEeccccCCCC--hh----hHhhcCCCCcEEEcCCCCCccccCC----CcC--CCccEE
Q psy16377 492 KIHQIEI----GTFEKNKRLAAIRLDSNFLTD--IN----GVFTYLAQLLWLNLSENHLVWFDYA----MVP--GNLKWL 555 (1344)
Q Consensus 492 ~i~~~~~----~~~~~l~~L~~L~L~~n~l~~--l~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~lp--~~L~~L 555 (1344)
++..-+. ..|.....|+.+.+..|.|.. +. ..+..+.+|+.|||.+|-++..... .+| +.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 7654332 123334567777777776652 11 2345667777777777766532211 112 135566
Q ss_pred EcCCCcCCCCCcccc-----ccCCCcccEEECCCCcc
Q psy16377 556 DIHGNYISSLNNYYE-----IKDGLSIKNLDASHNRI 587 (1344)
Q Consensus 556 ~Ls~n~l~~l~~~~~-----l~~~~~L~~L~Ls~N~l 587 (1344)
.+.+|-++.-+.... -...++|..|-..+|.+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 666665554432111 11134555555555544
No 65
>KOG4341|consensus
Probab=97.48 E-value=6.6e-06 Score=92.57 Aligned_cols=256 Identities=18% Similarity=0.167 Sum_probs=116.3
Q ss_pred CCCcccEEECCCCC-CCCCCCCccCCCCCCCCEEEccCC-CCCCcChh-hhcCCCCccEEEeeCCC-CCC-CChhhhcCC
Q psy16377 189 GGMDLRILDLSHNK-LRTLGDYSGITKFRRLQNLHLENN-EISQIAPN-AFVALSSLRILNISSNH-LVS-LPEGLFSSC 263 (1344)
Q Consensus 189 ~l~~L~~LdLs~n~-l~~l~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~-l~~~~f~~l 263 (1344)
.++++++|++.++. ++...-.+.-..+++|+.|+|..| .++...-. --.++++|++|+++++. +.+ --...+.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 36777777777764 322111111245677788877774 34433222 22356778888877774 221 011234566
Q ss_pred CCCcEEEcccCcccccChhhh----cCCCCCCEEEccCCCC-CCCCCCcccccCCCcccEEEccCCCCCccccccccCCC
Q psy16377 264 RDISEIYAQKNSLVELSRGLF----HKLEQLLVLDLSSNHL-SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338 (1344)
Q Consensus 264 ~~L~~L~L~~n~l~~l~~~~~----~~l~~L~~L~Ls~n~l-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 338 (1344)
..++.+.+.+|. +.+...+ ..+.-+..+++..+.. +... ....-.++..|+.|..+++..... ..+
T Consensus 242 ~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d--~~l---- 312 (483)
T KOG4341|consen 242 KELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITD--EVL---- 312 (483)
T ss_pred hhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCch--HHH----
Confidence 666666665542 1221111 2333444555444432 2100 011112344555555554432110 000
Q ss_pred cccEEEecCCCccccchhhhcCCCCccEEEccCCcc-cccccccc-cCCCceeEEEccCCcCCCCC--hhhhcCCCCCcE
Q psy16377 339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI-HHITAHLF-NGLYVLSKLTLSNNLLVNID--SKAFKNCSALKE 414 (1344)
Q Consensus 339 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~ 414 (1344)
...-.++++|+.|.+++++. +......+ .+++.|+.+++.++...... ...-.+|+.|+.
T Consensus 313 ----------------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 313 ----------------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred ----------------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 00112334444444444431 11111111 23445555555554322111 111234566666
Q ss_pred EEccCCCCCc------cchhhcCCCCccEEEccCCCC-CccCcchhcCCCCCcEEEcccCCC
Q psy16377 415 LDLSSNAIVE------IPSALSELPFLKTLDLGENQI-SKIENGSFKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 415 L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l 469 (1344)
|.+++|.+.. +...-..+..|+.+.|+++.. ++..-..+..+++|+.+++.+++-
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 6666654321 112223456677777777753 333344556677777777776654
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00057 Score=79.62 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=78.2
Q ss_pred ccCCCCccEEEcCCCcCcccccccccCCCccceEecccc-CCCChhhHhhcCCCCcEEEcCCC-CCccccCCCcCCCccE
Q psy16377 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN-FLTDINGVFTYLAQLLWLNLSEN-HLVWFDYAMVPGNLKW 554 (1344)
Q Consensus 477 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~Ls~n-~l~~~~~~~lp~~L~~ 554 (1344)
+..+.+++.|++++|.++.++ .+ ..+|+.|.+++| .++.+|+.+ ..+|+.|++++| .+ ..+|.+|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-----~sLP~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-----SGLPESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-----cccccccce
Confidence 344677888888888777664 22 245888888764 455666544 256777777777 44 246777777
Q ss_pred EEcCCCcCCCCCccccccCCCcccEEECCCCc-cc-ccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCC
Q psy16377 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNR-IL-EISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAND 632 (1344)
Q Consensus 555 L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~-l~-~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~ 632 (1344)
|+++++....++. +. .+|+.|.+.+++ .. ...+..+|.+|+.|++++|..... |..+- .+|+.|+++.+.
T Consensus 117 L~L~~n~~~~L~~---LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L-P~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKN---VP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL-PEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCccccc---Cc--chHhheeccccccccccccccccCCcccEEEecCCCcccC-ccccc--ccCcEEEecccc
Confidence 7777665444332 11 256667664432 11 111234666777777776654422 22221 356666665543
No 67
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=97.38 E-value=7.7e-05 Score=60.79 Aligned_cols=37 Identities=30% Similarity=0.725 Sum_probs=29.9
Q ss_pred CcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377 907 NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP 945 (1344)
Q Consensus 907 Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~ 945 (1344)
|||.|||+ +.||+.|+++ ...+.+...++|..|....
T Consensus 1 NP~~CdC~-l~~~~~w~~~-~~~~~~~~~~~C~~P~~~~ 37 (51)
T smart00082 1 NPFICDCE-LRWLLRWLQA-NEHLQDPVSLRCASPSSLR 37 (51)
T ss_pred CCccCcCC-chHHHHHHHh-CCccCCCCCCEeCCcHHHH
Confidence 89999999 7999999987 4455566789999886543
No 68
>KOG4341|consensus
Probab=97.32 E-value=3.2e-05 Score=87.20 Aligned_cols=292 Identities=18% Similarity=0.164 Sum_probs=132.6
Q ss_pred CCCEEEccCCCCCCcC--hhhhcCCCCccEEEeeCCCCCCCChh----hhcCCCCCcEEEcccC-cccccChh-hhcCCC
Q psy16377 217 RLQNLHLENNEISQIA--PNAFVALSSLRILNISSNHLVSLPEG----LFSSCRDISEIYAQKN-SLVELSRG-LFHKLE 288 (1344)
Q Consensus 217 ~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~----~f~~l~~L~~L~L~~n-~l~~l~~~-~~~~l~ 288 (1344)
.|+.|.+.++.-.+.. -....+++++++|++.++. .+... +-..|++|+.|++..| .++...-. .-..++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4666666665433321 1233456777777777764 22222 2245777777777774 44433222 335677
Q ss_pred CCCEEEccCCC-CCCCCCCcccccCCCcccEEEccCCCCCccccccc----cCCCcccEEEecCCC-ccccchh-hhcCC
Q psy16377 289 QLLVLDLSSNH-LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF----KDLVFLQRLDLRNNS-IGYIEDN-AFLSL 361 (1344)
Q Consensus 289 ~L~~L~Ls~n~-l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~i~~~-~f~~l 361 (1344)
+|++|+++.+. +++..+ ...+.++..++.+.+.+|.-... +.+ +.+..+-++++..+. ++..... .-..+
T Consensus 217 kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 88888888775 332111 23345556666665555432211 111 122334444444443 2222111 11234
Q ss_pred CCccEEEccCCcc-cccccc-cccCCCceeEEEccCCc-CCCCChhhh-cCCCCCcEEEccCCCCC---ccchhhcCCCC
Q psy16377 362 YNLHTIYLSENRI-HHITAH-LFNGLYVLSKLTLSNNL-LVNIDSKAF-KNCSALKELDLSSNAIV---EIPSALSELPF 434 (1344)
Q Consensus 362 ~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~ 434 (1344)
..|+.|..+++.- ++..-. .-.+..+|+.|.+..|+ +++.....+ .++..|+.+++..+... ++...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 5566666655432 111111 11344556666665554 222221112 12445555555555433 12222234455
Q ss_pred ccEEEccCCCC-CccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc-cccccccCCCccceEec
Q psy16377 435 LKTLDLGENQI-SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ-IEIGTFEKNKRLAAIRL 512 (1344)
Q Consensus 435 L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L 512 (1344)
|+.|.++.|.. ++.....+. ..-..+..|+.+.+++++... .....+..+++|+.+++
T Consensus 374 lr~lslshce~itD~gi~~l~--------------------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLS--------------------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred hccCChhhhhhhhhhhhhhhh--------------------hccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 55555554431 111100110 011234556666666664332 22234455667777777
Q ss_pred cccCCC---ChhhHhhcCCCCcEE
Q psy16377 513 DSNFLT---DINGVFTYLAQLLWL 533 (1344)
Q Consensus 513 ~~n~l~---~l~~~~~~l~~L~~L 533 (1344)
-++... .+...-..+++++..
T Consensus 434 ~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 434 IDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred echhhhhhhhhHHHHhhCccceeh
Confidence 666422 122333456665544
No 69
>KOG3665|consensus
Probab=97.29 E-value=0.00012 Score=92.47 Aligned_cols=110 Identities=28% Similarity=0.415 Sum_probs=78.2
Q ss_pred CCCCEEEccCCCCC--ccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCC
Q psy16377 126 RELQVLNISSSNIK--SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203 (1344)
Q Consensus 126 ~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l 203 (1344)
.+|++||+++...- ..+...-..||+|++|.+.+-.+..-. |.. -|.++++|..||+|++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~-------------lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQ-------------LCASFPNLRSLDISGTNI 185 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHH-------------HhhccCccceeecCCCCc
Confidence 58999999886432 222233345899999999886554322 211 166789999999999999
Q ss_pred CCCCCCccCCCCCCCCEEEccCCCCCC-cChhhhcCCCCccEEEeeCCCCCC
Q psy16377 204 RTLGDYSGITKFRRLQNLHLENNEISQ-IAPNAFVALSSLRILNISSNHLVS 254 (1344)
Q Consensus 204 ~~l~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 254 (1344)
+.+. +++++++|+.|.+.+-.+.. ..-..+.+|++|++||+|......
T Consensus 186 ~nl~---GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 186 SNLS---GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred cCcH---HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 8883 68999999999988766654 222456788999999999875443
No 70
>KOG2123|consensus
Probab=97.09 E-value=3e-05 Score=82.66 Aligned_cols=80 Identities=30% Similarity=0.374 Sum_probs=60.4
Q ss_pred CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccC-ccccCCCCCCEEE
Q psy16377 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN-GTFNALISLQVLQ 879 (1344)
Q Consensus 801 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~ 879 (1344)
.+.+.|++-++.+..|. ....++.|++|.||-|+|+.+.+ |..+++|++|||..|.|.+++. .-+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34555666666666652 34567888899999999988876 7889999999999999998876 4455677777777
Q ss_pred ccCCC
Q psy16377 880 LDGNR 884 (1344)
Q Consensus 880 L~~N~ 884 (1344)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 77774
No 71
>KOG3665|consensus
Probab=97.03 E-value=0.00024 Score=89.85 Aligned_cols=110 Identities=19% Similarity=0.329 Sum_probs=62.3
Q ss_pred CCCCCEEEccCCCCCccC-hhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCC
Q psy16377 125 LRELQVLNISSSNIKSIS-DDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203 (1344)
Q Consensus 125 l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l 203 (1344)
+|+|++|.+++-.+..-. .....++++|..||+++.+++.+.. .+.+++|+.|.+.+=.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G-------------------IS~LknLq~L~mrnLe~ 207 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG-------------------ISRLKNLQVLSMRNLEF 207 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-------------------HhccccHHHHhccCCCC
Confidence 566666666654333211 1234456666666666666665422 23366666666665555
Q ss_pred CCCCCCccCCCCCCCCEEEccCCCCCCcC------hhhhcCCCCccEEEeeCCCCC
Q psy16377 204 RTLGDYSGITKFRRLQNLHLENNEISQIA------PNAFVALSSLRILNISSNHLV 253 (1344)
Q Consensus 204 ~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~ 253 (1344)
..-.....+-+|++|+.||+|........ -+.-..||+|+.||.|++.+.
T Consensus 208 e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 208 ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 54333224566777777777765443321 122235789999999987655
No 72
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=96.58 E-value=0.0022 Score=64.95 Aligned_cols=46 Identities=35% Similarity=0.583 Sum_probs=34.4
Q ss_pred HHHhhhheeeeeeecccccCCccchhH--HHHHHHhc--ccEEEEecccc
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDF--LIEAAEAS--RRVILVLTKNF 1128 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~--i~~~i~~s--rr~i~vls~~f 1128 (1344)
++|+.||++|+|+|+||++++||..|. +.+..... .++|+++-..-
T Consensus 50 ~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v 99 (141)
T PF01582_consen 50 EAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDV 99 (141)
T ss_dssp HHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS
T ss_pred HhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccC
Confidence 688999999999999999999998876 33333333 36676665443
No 73
>KOG2123|consensus
Probab=96.35 E-value=0.00031 Score=75.14 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=61.0
Q ss_pred CCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChh-hhcCCCCCCEE
Q psy16377 215 FRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG-LFHKLEQLLVL 293 (1344)
Q Consensus 215 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L 293 (1344)
+.+.++|++.+|.+.++ ....+++.|++|.||-|+|+++.+ |..|++|++|+|..|.|..+..- .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44566777777777776 234567888888888888877765 67788888888888877766542 34788888888
Q ss_pred EccCCCCCC
Q psy16377 294 DLSSNHLSS 302 (1344)
Q Consensus 294 ~Ls~n~l~~ 302 (1344)
+|..|.-.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 888887554
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.08 E-value=0.0031 Score=87.31 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=52.1
Q ss_pred EecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCc
Q psy16377 627 DIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGST 706 (1344)
Q Consensus 627 dL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~ 706 (1344)
||++|+|+.++...|. ...+|..+.|.+|||.|||.+.||....+.. ...+.+.+.+.|..|.. ++
T Consensus 1 DLSnN~LstLp~g~F~-----~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~-------~v~v~~~~~i~CasP~~--Lr 66 (2740)
T TIGR00864 1 DISNNKISTIEEGICA-----NLCNLSEIDLSGNPFECDCGLARLPRWAEEK-------GVKVRQPEAALCAGPGA--LA 66 (2740)
T ss_pred CCCCCcCCccChHHhc-----cCCCceEEEeeCCccccccccHHHHHHHHhc-------CccccCCcccCCCCChH--HC
Confidence 3455555555554442 2235566677899999999999987642211 11233456778987753 45
Q ss_pred cccccccCCCCCcCCCC
Q psy16377 707 HLPASEAAPSQYLCPYD 723 (1344)
Q Consensus 707 ~~~l~~~~~~~~~c~~~ 723 (1344)
+.++.++.+.++.|..+
T Consensus 67 G~~L~~l~~~d~~C~~~ 83 (2740)
T TIGR00864 67 GQPLLGIPLLDSGCDEE 83 (2740)
T ss_pred CCCcccCCcccCCCCCc
Confidence 56777888888887544
No 75
>KOG2739|consensus
Probab=95.98 E-value=0.0036 Score=67.47 Aligned_cols=101 Identities=24% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCC--CCCCcChhhhcCCCCccEEEeeCCCCCC---CChhhhcCCC
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN--EISQIAPNAFVALSSLRILNISSNHLVS---LPEGLFSSCR 264 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~~~f~~l~ 264 (1344)
+..|+.|++.+..++.+. .+..+++|+.|.++.| ++.+-.+-....+++|++|++++|++.. +.+ ...+.
T Consensus 42 ~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELE 116 (260)
T ss_pred ccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhc
Confidence 456777777777777665 3677889999999999 6655544445566999999999998763 222 34556
Q ss_pred CCcEEEcccCccccc---ChhhhcCCCCCCEEEc
Q psy16377 265 DISEIYAQKNSLVEL---SRGLFHKLEQLLVLDL 295 (1344)
Q Consensus 265 ~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L 295 (1344)
+|..|++.+|..+.+ -..+|.-+++|+.||-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 667777777654432 2344555666666643
No 76
>KOG2739|consensus
Probab=95.97 E-value=0.0046 Score=66.72 Aligned_cols=106 Identities=25% Similarity=0.433 Sum_probs=51.0
Q ss_pred CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC
Q psy16377 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205 (1344)
Q Consensus 126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~ 205 (1344)
..|+.|.+.+..++.+.. |-.+++|+.|.++.|.........+. ...+++|++|++++|++..
T Consensus 43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl---------------~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL---------------AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh---------------hhhCCceeEEeecCCcccc
Confidence 344444455444444332 34566677777776643322111110 1114666666666666654
Q ss_pred CCCCccCCCCCCCCEEEccCCCCCCcC---hhhhcCCCCccEEEee
Q psy16377 206 LGDYSGITKFRRLQNLHLENNEISQIA---PNAFVALSSLRILNIS 248 (1344)
Q Consensus 206 l~~~~~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls 248 (1344)
+.....+..+.+|..|++.+|..+... ...|.-+++|++|+-.
T Consensus 106 lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 106 LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 333334555566666666665544321 1223334555555433
No 77
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=95.96 E-value=0.0082 Score=43.68 Aligned_cols=32 Identities=41% Similarity=0.925 Sum_probs=27.8
Q ss_pred CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCcc
Q psy16377 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT 780 (1344)
Q Consensus 743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~ 780 (1344)
.||..|+|. ...|+|++.++.++|..||.+++
T Consensus 1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~iP~~t~ 32 (33)
T smart00013 1 ACPAPCNCS------GTAVDCSGRGLTEVPLDLPPDTT 32 (33)
T ss_pred CcCCCCEEC------CCEeEeCCCCcCccCCCCCcccc
Confidence 489999997 45899999999999999998754
No 78
>KOG1947|consensus
Probab=95.93 E-value=0.002 Score=80.17 Aligned_cols=62 Identities=27% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCCceeEEEccCCc-CCCCChhhhcC-CCCCcEEEccCCC-CC--ccchhhcCCCCccEEEccCCCC
Q psy16377 384 GLYVLSKLTLSNNL-LVNIDSKAFKN-CSALKELDLSSNA-IV--EIPSALSELPFLKTLDLGENQI 445 (1344)
Q Consensus 384 ~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~Ls~n~i 445 (1344)
.+.+|+.|+++.+. +++..-..+.. |++|+.|.+.+|. ++ .+-.....++.|++|++++|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34455555555554 44433333332 5566666655554 33 2323334556666666666543
No 79
>KOG1947|consensus
Probab=95.30 E-value=0.0038 Score=77.61 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=10.0
Q ss_pred hcCCCCCcEEEccCCCC
Q psy16377 406 FKNCSALKELDLSSNAI 422 (1344)
Q Consensus 406 ~~~l~~L~~L~Ls~n~l 422 (1344)
+..++.|+.+.+..+..
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 44566666666666553
No 80
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=95.23 E-value=0.031 Score=56.41 Aligned_cols=42 Identities=38% Similarity=0.623 Sum_probs=31.7
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHHHHHH-----hcccEEEEec
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE-----ASRRVILVLT 1125 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~-----~srr~i~vls 1125 (1344)
++++.|+++|+|+|++|++++||..|. ..+.+ ..+++|-|+-
T Consensus 50 ~~i~~s~~~i~vlS~~~~~S~w~~~E~-~~a~~~~~~~~~~~iIPI~~ 96 (140)
T smart00255 50 EAIEKSRIAIVVLSPNYAESEWCLDEL-VAALENALEEGGLRVIPIFY 96 (140)
T ss_pred HHHHHCcEEEEEECcccccChhHHHHH-HHHHHHHHHcCCCeEEEEEE
Confidence 578889999999999999999999855 33332 4456665553
No 81
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=94.57 E-value=0.034 Score=38.66 Aligned_cols=28 Identities=39% Similarity=1.035 Sum_probs=21.8
Q ss_pred CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCC
Q psy16377 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP 776 (1344)
Q Consensus 743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip 776 (1344)
.||..|.|. ...|+|++.+++++|..||
T Consensus 1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCS------GLTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEE------TTEEEETTSS-SSS-STS-
T ss_pred CcCCCCEec------CCEeECCCCCCCccCCCCc
Confidence 488999997 5589999999999999876
No 82
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.06 E-value=0.052 Score=35.40 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=6.9
Q ss_pred cceeeccccccccccC
Q psy16377 851 LSELYLQENRIEYIAN 866 (1344)
Q Consensus 851 L~~L~L~~N~l~~i~~ 866 (1344)
|++|+|++|+|+.||+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444433
No 83
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=92.82 E-value=0.029 Score=45.51 Aligned_cols=50 Identities=30% Similarity=0.535 Sum_probs=33.0
Q ss_pred CcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcC
Q psy16377 660 NPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC 720 (1344)
Q Consensus 660 Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c 720 (1344)
|||.|+|.+.||..... +...+.+.+.+.|..|.... .++.++.++++.|
T Consensus 1 NP~~CdC~l~~~~~w~~--------~~~~~~~~~~~~C~~P~~~~---~~l~~~~~~~~~C 50 (51)
T smart00082 1 NPFICDCELRWLLRWLQ--------ANEHLQDPVSLRCASPSSLR---GPLLELLHSEFKC 50 (51)
T ss_pred CCccCcCCchHHHHHHH--------hCCccCCCCCCEeCCcHHHH---hHHHcCCHhhCCC
Confidence 89999999999986432 11234455689998775522 3466666666654
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.65 E-value=0.056 Score=35.27 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=13.1
Q ss_pred ccceeecccccccccCcccccC
Q psy16377 826 SLQVLHLENNLITHFYGYEFDN 847 (1344)
Q Consensus 826 ~L~~L~Ls~N~l~~l~~~~f~~ 847 (1344)
+|++|||++|+|+.+++. |.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT
T ss_pred CccEEECCCCcCEeCChh-hcC
Confidence 366677777777766554 544
No 85
>KOG3678|consensus
Probab=92.00 E-value=2.3 Score=49.21 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=51.0
Q ss_pred hHHHHHHHhcccEEEEecccch--------hhhhhHHHHHHHHHHHHhcCCceEEEEEec----CCCcccchhhHHHHhh
Q psy16377 1108 DFLIEAAEASRRVILVLTKNFL--------QTEWSRSDFRSAIHEALTTKTHKLVLVEEN----IVPEAESDIELKPYLK 1175 (1344)
Q Consensus 1108 ~~i~~~i~~srr~i~vls~~f~--------~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~----~~~~~~~~~~l~~~l~ 1175 (1344)
+.+...|...|..|+|+||+.+ ...|-+.|+..|+. ..+++|+|+-. |-+++.++.+++...|
T Consensus 656 ssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe-----~~KNIiPI~D~aFE~Pt~ed~iPnDirmi~k 730 (832)
T KOG3678|consen 656 SSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFE-----HQKNIIPIFDTAFEFPTKEDQIPNDIRMITK 730 (832)
T ss_pred HHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHH-----hcCCeeeeecccccCCCchhcCcHHHHHHHh
Confidence 3578888888889999988876 34699999998886 45788898754 2345567777765543
Q ss_pred hccEEEeC
Q psy16377 1176 SCMKIRWG 1183 (1344)
Q Consensus 1176 ~~~~l~w~ 1183 (1344)
..-++|-
T Consensus 731 -yNGvKWv 737 (832)
T KOG3678|consen 731 -YNGVKWV 737 (832)
T ss_pred -ccCeeee
Confidence 4458995
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.45 E-value=0.095 Score=35.73 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=9.8
Q ss_pred cccceeeccccccccccCccc
Q psy16377 849 EKLSELYLQENRIEYIANGTF 869 (1344)
Q Consensus 849 ~~L~~L~L~~N~l~~i~~~~f 869 (1344)
++|+.|+|++|+|+.|+++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 344444444444444444444
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.45 E-value=0.095 Score=35.73 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=9.8
Q ss_pred cccceeeccccccccccCccc
Q psy16377 849 EKLSELYLQENRIEYIANGTF 869 (1344)
Q Consensus 849 ~~L~~L~L~~N~l~~i~~~~f 869 (1344)
++|+.|+|++|+|+.|+++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 344444444444444444444
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.57 E-value=0.21 Score=34.01 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=17.7
Q ss_pred CCccceeecccccccccCccccc
Q psy16377 824 LSSLQVLHLENNLITHFYGYEFD 846 (1344)
Q Consensus 824 l~~L~~L~Ls~N~l~~l~~~~f~ 846 (1344)
+++|+.|+|++|+|+.++++.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46778888888888888777765
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.57 E-value=0.21 Score=34.01 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=17.7
Q ss_pred CCccceeecccccccccCccccc
Q psy16377 824 LSSLQVLHLENNLITHFYGYEFD 846 (1344)
Q Consensus 824 l~~L~~L~Ls~N~l~~l~~~~f~ 846 (1344)
+++|+.|+|++|+|+.++++.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46778888888888888777765
No 90
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.07 E-value=0.25 Score=29.94 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=5.7
Q ss_pred CCCEEEccCCCCccc
Q psy16377 874 SLQVLQLDGNRLKSF 888 (1344)
Q Consensus 874 ~L~~L~L~~N~l~~~ 888 (1344)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344455555544443
No 91
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.87 E-value=0.21 Score=30.27 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=5.6
Q ss_pred ccceeeccccccccc
Q psy16377 850 KLSELYLQENRIEYI 864 (1344)
Q Consensus 850 ~L~~L~L~~N~l~~i 864 (1344)
+|+.|+|++|+|+++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444544444443
No 92
>KOG4308|consensus
Probab=88.54 E-value=0.011 Score=71.84 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=8.3
Q ss_pred hcCCCccceeecccccc
Q psy16377 821 FNGLSSLQVLHLENNLI 837 (1344)
Q Consensus 821 f~~l~~L~~L~Ls~N~l 837 (1344)
+...+.+.+++++.|..
T Consensus 400 ~~~~~~l~~~~l~~n~~ 416 (478)
T KOG4308|consen 400 LASNEKLEILDLSLNSL 416 (478)
T ss_pred hhhcchhhhhhhhcCcc
Confidence 33444555555555533
No 93
>KOG4308|consensus
Probab=86.87 E-value=0.024 Score=68.94 Aligned_cols=83 Identities=28% Similarity=0.384 Sum_probs=37.9
Q ss_pred eeEEEccCCcCCCCC----hhhhcCCCCCcEEEccCCCCC-----ccchhhc----CCCCccEEEccCCCCCccCc----
Q psy16377 388 LSKLTLSNNLLVNID----SKAFKNCSALKELDLSSNAIV-----EIPSALS----ELPFLKTLDLGENQISKIEN---- 450 (1344)
Q Consensus 388 L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~----~l~~L~~L~Ls~n~i~~~~~---- 450 (1344)
+++|++..|.++... ...+.....++.++++.|.+. .++..+. ...++++|.+.+|.++....
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 344444444444322 223334556666666666553 1222222 35556666666665553211
Q ss_pred chhcCCCC-CcEEEcccCCCC
Q psy16377 451 GSFKNLQQ-LTDLRLVDNNIG 470 (1344)
Q Consensus 451 ~~~~~l~~-L~~L~L~~n~l~ 470 (1344)
..+...+. +..|++..|.++
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHHhccchhhHHHHHHhcCcc
Confidence 12222333 444555555553
No 94
>KOG0473|consensus
Probab=86.22 E-value=0.035 Score=58.51 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=53.5
Q ss_pred hcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR 900 (1344)
Q Consensus 821 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~ 900 (1344)
.......+.||++.|++..+.. -|+-++.|..|+|+.|+|..++. .|..+..+..+++.+|.++..|.. +...+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCcc-ccccCCcc
Confidence 3344555666666666665533 46666677777777777766644 344455566666677776666654 55566677
Q ss_pred EEEecCCcc
Q psy16377 901 KVYLGNNPF 909 (1344)
Q Consensus 901 ~L~l~~Np~ 909 (1344)
++++-+|||
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 777777775
No 95
>KOG3864|consensus
Probab=85.69 E-value=0.18 Score=52.60 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=59.6
Q ss_pred ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCCcccc-cCCCCccEEEcCCC-cCccccccc
Q psy16377 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGML-YELPSLEVLNLSKN-KIHQIEIGT 500 (1344)
Q Consensus 424 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~ 500 (1344)
++|.....-..++.+|-+++.|..+.-..+.+++.++.|.+.+|.- ..---+.+ .-.++|+.|++++| +|++-....
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4444333334577888888888877777778888888888887754 11111111 13578889999888 566666566
Q ss_pred ccCCCccceEeccc
Q psy16377 501 FEKNKRLAAIRLDS 514 (1344)
Q Consensus 501 ~~~l~~L~~L~L~~ 514 (1344)
+..+++|+.|.|.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 66777777776654
No 96
>PLN03194 putative disease resistance protein; Provisional
Probab=83.35 E-value=1.5 Score=45.61 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHHHHHHhcccEEEEe
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVL 1124 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~srr~i~vl 1124 (1344)
.||+.|+..|+|+|+||..+.||..| +..+++. ++.|+-|
T Consensus 76 ~AIeeSri~IvVfS~~Ya~S~WCLdE-L~~I~e~-~~~ViPI 115 (187)
T PLN03194 76 SAIRNCKVGVAVFSPRYCESYFCLHE-LALIMES-KKRVIPI 115 (187)
T ss_pred HHHHhCeEEEEEECCCcccchhHHHH-HHHHHHc-CCEEEEE
Confidence 58899999999999999999999875 4555554 4444433
No 97
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=83.34 E-value=1.5 Score=43.55 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=34.7
Q ss_pred hHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCc
Q psy16377 1108 DFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE 1163 (1344)
Q Consensus 1108 ~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~ 1163 (1344)
..|.+.|+.|..+||+++++--.++|..+|++.|+. ....+|.|.+....+
T Consensus 62 ~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~-----~~~~Ii~V~~~~~~~ 112 (130)
T PF08937_consen 62 RKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK-----KGKPIIGVYLPGLKD 112 (130)
T ss_dssp HHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT-----T---EEEEETT--SG
T ss_pred HHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH-----CCCCEEEEECCCCCC
Confidence 568999999999999999999899999999998877 667888887665543
No 98
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=83.09 E-value=0.5 Score=44.66 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=32.2
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHHHHHHhcccEEEEec
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLT 1125 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~srr~i~vls 1125 (1344)
++++.|..+|+++|++|++++||..| +..|-+..+++|-|+-
T Consensus 45 ~~i~~s~~~i~~~S~~~~~s~~~~~E-~~~a~~~~~~iipv~~ 86 (102)
T PF13676_consen 45 RAIERSDCVIVLLSPNYLKSPWCRFE-LGAAWKRGKPIIPVRL 86 (102)
T ss_dssp HCCTTEEEEEEEEEHHHHCTHHHHHH-HHHHHCTSESEEEEEC
T ss_pred HHHHhCCEEEEEECcccccChHHHHH-HHHHHHCCCEEEEEEE
Confidence 45677889999999999999999996 5555555555666653
No 99
>KOG0473|consensus
Probab=81.73 E-value=0.056 Score=57.03 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCC
Q psy16377 138 IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRR 217 (1344)
Q Consensus 138 i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~ 217 (1344)
++.+|...+......+.||++.|++..+... ++-++.|..||++.|.+..+|.. +.....
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n------------------~s~~t~~~rl~~sknq~~~~~~d--~~q~~e 89 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKN------------------FSILTRLVRLDLSKNQIKFLPKD--AKQQRE 89 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccc------------------hHHHHHHHHHhccHhhHhhChhh--HHHHHH
Confidence 3444544455555666666666655433221 11145566666666666666553 555566
Q ss_pred CCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCC
Q psy16377 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252 (1344)
Q Consensus 218 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 252 (1344)
++.+++..|..+.. |.++..++.++++++.++.+
T Consensus 90 ~~~~~~~~n~~~~~-p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 90 TVNAASHKNNHSQQ-PKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHhhccchhhC-CccccccCCcchhhhccCcc
Confidence 66666666655554 55666666666666666543
No 100
>KOG3864|consensus
Probab=78.86 E-value=0.52 Score=49.30 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=48.3
Q ss_pred ceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC---ccchhh-cCCCCccEEEccCC-CCCccCcchhcCCCCCcE
Q psy16377 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV---EIPSAL-SELPFLKTLDLGEN-QISKIENGSFKNLQQLTD 461 (1344)
Q Consensus 387 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~lp~~l-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 461 (1344)
.++.++-+++.|..+.-+.+.+++.++.|.+.+|.-. .+ +.+ .-.++|+.|+|++| +|++-.-..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4566666666666666666666777777777666422 11 111 13467888888877 366655556666677776
Q ss_pred EEccc
Q psy16377 462 LRLVD 466 (1344)
Q Consensus 462 L~L~~ 466 (1344)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66654
No 101
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.07 E-value=2 Score=29.30 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=7.7
Q ss_pred cccceeeccccccccc
Q psy16377 849 EKLSELYLQENRIEYI 864 (1344)
Q Consensus 849 ~~L~~L~L~~N~l~~i 864 (1344)
++|++|+|++|+|+.|
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3444555555555444
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.67 E-value=3.5 Score=28.21 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=12.0
Q ss_pred CCccceeecccccccccC
Q psy16377 824 LSSLQVLHLENNLITHFY 841 (1344)
Q Consensus 824 l~~L~~L~Ls~N~l~~l~ 841 (1344)
+++|+.|+|+.|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356777777777776653
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.02 E-value=4.7 Score=27.49 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.1
Q ss_pred CCCCEEEccCCCCccccc
Q psy16377 873 ISLQVLQLDGNRLKSFRA 890 (1344)
Q Consensus 873 ~~L~~L~L~~N~l~~~~~ 890 (1344)
++|+.|+.++|+|+.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888776
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.75 E-value=6.4 Score=26.87 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=11.5
Q ss_pred CCCccEEEcCCCcCCCCCc
Q psy16377 549 PGNLKWLDIHGNYISSLNN 567 (1344)
Q Consensus 549 p~~L~~L~Ls~n~l~~l~~ 567 (1344)
|++|++|++++|+++++|.
T Consensus 1 P~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 1 PPSLKELNVSNNQLTSLPE 19 (26)
T ss_pred CcccceeecCCCccccCcc
Confidence 4456666666666666654
No 105
>KOG3763|consensus
Probab=52.17 E-value=6.7 Score=47.36 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCCEEEccCCCCcccccccccC--CCCCcEEEecCCcc
Q psy16377 873 ISLQVLQLDGNRLKSFRAFDLNT--NSMLRKVYLGNNPF 909 (1344)
Q Consensus 873 ~~L~~L~L~~N~l~~~~~~~l~~--~~~L~~L~l~~Np~ 909 (1344)
|+|..|+|++|....-..+.+.. ...|++|.+.|||.
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 67788888888322222222222 24578999999998
No 106
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.76 E-value=3.3 Score=27.45 Aligned_cols=15 Identities=60% Similarity=0.860 Sum_probs=6.3
Q ss_pred CCccEEEccCCCCCc
Q psy16377 433 PFLKTLDLGENQISK 447 (1344)
Q Consensus 433 ~~L~~L~Ls~n~i~~ 447 (1344)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555554443
No 107
>KOG3763|consensus
Probab=39.74 E-value=20 Score=43.49 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCCCccEEEcCCC--cCccccc-ccccCCCccceEeccccCCC
Q psy16377 479 ELPSLEVLNLSKN--KIHQIEI-GTFEKNKRLAAIRLDSNFLT 518 (1344)
Q Consensus 479 ~l~~L~~L~Ls~n--~i~~~~~-~~~~~l~~L~~L~L~~n~l~ 518 (1344)
..|+|+.|+|++| .+..... ..+ +...|++|.+.||.+.
T Consensus 242 ~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLC 283 (585)
T ss_pred hcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccc
Confidence 3466777777776 2222211 111 2244777777777665
No 108
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.23 E-value=35 Score=23.71 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=7.6
Q ss_pred CCCCEEEccCCCCc
Q psy16377 873 ISLQVLQLDGNRLK 886 (1344)
Q Consensus 873 ~~L~~L~L~~N~l~ 886 (1344)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34555555555554
No 109
>KOG4242|consensus
Probab=23.04 E-value=2.4e+02 Score=34.06 Aligned_cols=260 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred CcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccc---cCCCceeEEEccCCcCCCCChhhhcCC---CC
Q psy16377 338 VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF---NGLYVLSKLTLSNNLLVNIDSKAFKNC---SA 411 (1344)
Q Consensus 338 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~ 411 (1344)
+.+++++++.|.+..-.+..+..-..= +.+..|.++......+ .+-..+.+++++.|....-.+....-+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Q ss_pred CcEEEccCCCCC----ccchhhcCCCCccEEEccCC--------CCCccCcchhcCCCCCcEEEcccCCC-CCCCccccc
Q psy16377 412 LKELDLSSNAIV----EIPSALSELPFLKTLDLGEN--------QISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLY 478 (1344)
Q Consensus 412 L~~L~Ls~n~l~----~lp~~l~~l~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~ 478 (1344)
++.++.+...+. .-+-..+.-++|...+++.| .+.+.....|..-.++ .|++.++.. .+-...++-
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Q ss_pred CC-----CCccEEEcCCCcCccccc-ccccCCCccceEeccccCCCC----hhhHhhcCCCCcEEEcCCCCC--ccccCC
Q psy16377 479 EL-----PSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTD----INGVFTYLAQLLWLNLSENHL--VWFDYA 546 (1344)
Q Consensus 479 ~l-----~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~----l~~~~~~l~~L~~L~Ls~n~l--~~~~~~ 546 (1344)
.+ +.=-.+++..|....-.. ++-..-..++.|.+.+|++.. +. .....++++.+++.+-.- .-....
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vg-k~~~s~s~r~l~agrs~~kqvm~s~~ 400 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVG-KRKQSKSGRILKAGRSGDKQVMDSST 400 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccccc-ceeeccccccccccccCCceeccccc
Q ss_pred CcCC---------CccEEEcCCCcCCCCCc--cccccCCCcccEEECCCCcccccccccccCcccE
Q psy16377 547 MVPG---------NLKWLDIHGNYISSLNN--YYEIKDGLSIKNLDASHNRILEISELSIPNSVEV 601 (1344)
Q Consensus 547 ~lp~---------~L~~L~Ls~n~l~~l~~--~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~ 601 (1344)
..+. -+..+.++.+.+..-.. ...+...+.+..|++++|.........++..+++
T Consensus 401 ~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~ 466 (553)
T KOG4242|consen 401 EAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQS 466 (553)
T ss_pred cchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCC
No 110
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.65 E-value=1e+02 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=12.1
Q ss_pred CCcEEEcCCCCCccccCCCcCCCccEEEc
Q psy16377 529 QLLWLNLSENHLVWFDYAMVPGNLKWLDI 557 (1344)
Q Consensus 529 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~L 557 (1344)
+++.|.+.++--..+..+.+|.++++|.+
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEe
Confidence 34444443322222334445555555544
Done!