Query psy16377
Match_columns 1344
No_of_seqs 850 out of 7151
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:45:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j0a_A TOLL-like receptor 5; m 100.0 2E-82 6.9E-87 837.0 51.9 757 190-1201 23-820 (844)
2 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-58 1.8E-62 592.5 47.3 628 194-959 7-671 (680)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-58 8E-63 601.5 37.9 699 9-913 32-743 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 6.9E-55 2.4E-59 563.5 49.4 632 21-716 8-668 (680)
5 3rgz_A Protein brassinosteroid 100.0 1.3E-55 4.4E-60 575.6 40.5 655 71-915 50-722 (768)
6 3t6q_A CD180 antigen; protein- 100.0 1.7E-51 5.7E-56 524.6 45.6 562 219-944 15-593 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-50 7.5E-55 514.2 44.8 573 153-958 14-604 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-51 5E-56 542.9 32.9 528 115-887 16-561 (844)
9 3t6q_A CD180 antigen; protein- 100.0 2.1E-49 7.3E-54 505.1 45.8 576 3-702 3-592 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2E-46 7E-51 477.6 39.4 555 97-702 13-590 (606)
11 4g8a_A TOLL-like receptor 4; l 100.0 6.6E-46 2.2E-50 475.6 43.0 581 220-960 35-627 (635)
12 2z63_A TOLL-like receptor 4, v 100.0 6.3E-45 2.1E-49 460.5 35.4 539 219-943 10-562 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 8.8E-44 3E-48 447.7 40.2 108 827-942 433-540 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-42 4.6E-47 444.9 42.8 576 20-723 34-628 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.5E-43 3.2E-47 438.3 33.0 204 457-673 310-521 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-41 7.8E-46 422.6 31.5 159 779-943 350-512 (520)
17 2z63_A TOLL-like receptor 4, v 100.0 6.1E-41 2.1E-45 423.9 35.5 475 21-541 11-531 (570)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.4E-40 2.9E-44 412.1 32.5 157 779-940 379-546 (562)
19 2z7x_B TOLL-like receptor 1, v 100.0 4E-40 1.4E-44 411.4 27.2 459 153-673 3-492 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-37 7.6E-42 390.0 30.6 461 127-672 32-519 (562)
21 4eco_A Uncharacterized protein 100.0 2.2E-37 7.5E-42 394.4 29.1 440 3-496 53-602 (636)
22 3v47_A TOLL-like receptor 5B a 100.0 1.9E-36 6.5E-41 371.5 33.9 165 777-943 275-439 (455)
23 4ecn_A Leucine-rich repeat pro 100.0 7.3E-37 2.5E-41 395.3 30.4 438 43-518 323-864 (876)
24 4eco_A Uncharacterized protein 100.0 1.5E-37 5.3E-42 395.8 16.8 445 71-565 81-602 (636)
25 4ecn_A Leucine-rich repeat pro 100.0 3.1E-36 1.1E-40 389.4 25.6 450 185-668 317-871 (876)
26 3v47_A TOLL-like receptor 5B a 100.0 3.3E-34 1.1E-38 351.5 29.0 393 1-450 1-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.3E-34 8E-39 350.5 20.0 408 190-664 10-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 5.6E-34 1.9E-38 347.2 23.2 349 70-495 10-371 (454)
29 1o6v_A Internalin A; bacterial 100.0 2E-31 6.9E-36 327.4 34.4 280 190-496 89-368 (466)
30 1o6v_A Internalin A; bacterial 100.0 1.6E-31 5.5E-36 328.3 33.2 347 69-496 44-390 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 4.1E-32 1.4E-36 335.0 27.2 331 2-374 1-332 (477)
32 2id5_A Lingo-1, leucine rich r 100.0 4.6E-31 1.6E-35 325.6 29.1 321 193-519 13-334 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-30 1.4E-34 313.3 27.4 226 188-443 39-264 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-30 1.2E-34 313.9 26.3 357 121-618 37-395 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 3.3E-29 1.1E-33 300.4 28.5 311 125-496 44-354 (390)
36 4fmz_A Internalin; leucine ric 100.0 1.2E-28 4.3E-33 290.5 32.0 304 190-541 43-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 3.7E-29 1.3E-33 300.0 27.0 308 191-519 45-353 (390)
38 4fmz_A Internalin; leucine ric 100.0 2E-28 6.9E-33 288.7 32.5 305 213-563 41-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 2.5E-28 8.6E-33 309.1 28.5 310 125-495 50-359 (597)
40 3oja_B Anopheles plasmodium-re 100.0 6E-28 2.1E-32 305.7 27.9 311 215-590 50-360 (597)
41 1xku_A Decorin; proteoglycan, 100.0 2.1E-27 7.2E-32 277.8 28.6 290 190-491 30-329 (330)
42 3zyj_A Leucine-rich repeat-con 100.0 1.7E-27 5.9E-32 290.1 28.9 294 530-961 45-342 (440)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-27 5.2E-32 279.2 24.1 288 191-491 33-330 (332)
44 3zyi_A Leucine-rich repeat-con 100.0 4.6E-27 1.6E-31 287.4 28.3 293 530-961 56-353 (452)
45 1xku_A Decorin; proteoglycan, 100.0 1.6E-26 5.6E-31 270.3 29.8 290 151-468 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-27 1.3E-31 275.9 24.4 289 151-468 34-331 (332)
47 2z80_A TOLL-like receptor 2, v 99.9 4.3E-27 1.5E-31 278.0 21.7 145 796-943 193-345 (353)
48 2z66_A Variable lymphocyte rec 99.9 8.2E-27 2.8E-31 269.7 20.9 279 531-945 10-295 (306)
49 2v9t_B SLIT homolog 2 protein 99.9 8.7E-27 3E-31 255.2 20.0 194 742-945 3-196 (220)
50 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-28 5.5E-33 301.5 3.0 352 190-543 2-413 (461)
51 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-28 5.1E-33 301.8 0.7 114 44-163 4-126 (461)
52 1t3g_A X-linked interleukin-1 99.9 2.8E-27 9.5E-32 241.2 9.5 124 1038-1197 25-159 (159)
53 2j67_A TOLL like receptor 10; 99.9 2.2E-27 7.7E-32 245.8 6.8 140 1022-1196 31-178 (178)
54 1p9a_G Platelet glycoprotein I 99.9 1.7E-25 5.9E-30 255.9 22.4 222 571-930 6-227 (290)
55 2v70_A SLIT-2, SLIT homolog 2 99.9 1.4E-25 4.8E-30 245.6 19.7 193 742-944 3-196 (220)
56 3zyj_A Leucine-rich repeat-con 99.9 3.6E-25 1.2E-29 269.6 25.4 260 2-302 33-293 (440)
57 2o6q_A Variable lymphocyte rec 99.9 5.2E-25 1.8E-29 249.6 24.2 234 576-942 17-251 (270)
58 3zyi_A Leucine-rich repeat-con 99.9 4.7E-25 1.6E-29 269.6 25.0 260 2-302 44-304 (452)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-24 3.8E-29 249.1 23.2 162 778-943 106-267 (285)
60 2z80_A TOLL-like receptor 2, v 99.9 1.3E-24 4.6E-29 256.5 22.6 280 190-495 30-315 (353)
61 2z66_A Variable lymphocyte rec 99.9 2.6E-25 8.9E-30 257.1 16.1 256 4-302 1-262 (306)
62 1fyx_A TOLL-like receptor 2; b 99.9 1.1E-26 3.8E-31 234.8 3.1 137 1025-1196 4-148 (149)
63 1ozn_A Reticulon 4 receptor; N 99.9 7.7E-25 2.6E-29 250.4 17.7 237 3-277 1-238 (285)
64 2z62_A TOLL-like receptor 4, v 99.9 4.7E-24 1.6E-28 242.6 23.3 162 779-943 102-268 (276)
65 3e6j_A Variable lymphocyte rec 99.9 7.1E-24 2.4E-28 233.7 20.2 183 759-942 22-212 (229)
66 3ogk_B Coronatine-insensitive 99.9 6.4E-25 2.2E-29 278.5 9.1 328 214-543 162-528 (592)
67 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-24 1.3E-28 248.0 14.5 108 191-300 50-161 (313)
68 1ogq_A PGIP-2, polygalacturona 99.9 3.3E-24 1.1E-28 248.4 14.0 249 216-469 50-303 (313)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-22 4.7E-27 254.0 27.9 226 191-455 81-306 (622)
70 3g06_A SSPH2 (leucine-rich rep 99.9 8.3E-23 2.8E-27 256.0 25.9 264 315-641 41-304 (622)
71 3ogk_B Coronatine-insensitive 99.9 7.4E-25 2.5E-29 277.9 7.2 297 214-514 218-547 (592)
72 2xot_A Amphoterin-induced prot 99.9 6E-23 2.1E-27 242.8 18.0 211 741-961 9-251 (361)
73 2wfh_A SLIT homolog 2 protein 99.9 7.9E-23 2.7E-27 218.6 16.5 169 742-945 2-170 (193)
74 2o6s_A Variable lymphocyte rec 99.9 2.5E-22 8.4E-27 218.0 19.4 182 744-931 1-182 (208)
75 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-23 4.4E-28 244.0 9.5 261 191-467 10-272 (317)
76 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-23 1.3E-27 240.2 11.8 259 242-515 12-272 (317)
77 3m19_A Variable lymphocyte rec 99.9 2.9E-22 9.9E-27 224.3 18.0 184 744-932 4-214 (251)
78 2p1m_B Transport inhibitor res 99.9 1.6E-23 5.5E-28 265.7 4.4 205 312-518 287-519 (594)
79 2p1m_B Transport inhibitor res 99.9 5.2E-24 1.8E-28 270.2 -1.2 378 92-496 102-521 (594)
80 1w8a_A SLIT protein; signaling 99.9 1.9E-21 6.4E-26 208.0 18.7 186 743-961 1-187 (192)
81 2js7_A Myeloid differentiation 99.9 1.8E-23 6E-28 213.4 2.3 134 1024-1198 14-152 (160)
82 2xwt_C Thyrotropin receptor; s 99.9 4.8E-21 1.6E-25 212.7 18.8 226 1-273 1-235 (239)
83 4fcg_A Uncharacterized protein 99.9 7.7E-21 2.6E-25 221.4 19.9 232 190-469 80-313 (328)
84 4fcg_A Uncharacterized protein 99.9 8.9E-21 3E-25 220.9 20.5 235 216-497 81-317 (328)
85 1wwl_A Monocyte differentiatio 99.8 4.2E-22 1.4E-26 230.7 7.7 248 335-611 40-310 (312)
86 1wwl_A Monocyte differentiatio 99.8 6.4E-22 2.2E-26 229.2 8.1 250 236-519 39-310 (312)
87 3rfs_A Internalin B, repeat mo 99.8 7.8E-21 2.7E-25 215.4 16.5 154 778-931 86-239 (272)
88 2z62_A TOLL-like receptor 4, v 99.8 3.4E-20 1.2E-24 210.7 21.4 223 194-423 10-237 (276)
89 2o6q_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 209.2 21.8 202 190-397 15-216 (270)
90 3oja_A Leucine-rich immune mol 99.8 3.6E-21 1.2E-25 236.5 13.8 235 216-465 34-270 (487)
91 3oja_A Leucine-rich immune mol 99.8 1.4E-20 4.6E-25 231.4 16.4 215 265-494 35-250 (487)
92 1p9a_G Platelet glycoprotein I 99.8 7.3E-20 2.5E-24 209.1 19.6 203 334-541 6-208 (290)
93 2o6r_A Variable lymphocyte rec 99.8 3.7E-20 1.3E-24 195.2 15.6 167 744-942 1-167 (177)
94 4ay9_X Follicle-stimulating ho 99.8 2.9E-20 9.9E-25 218.9 16.2 248 4-297 2-255 (350)
95 3g39_A Variable lymphocyte rec 99.8 4.8E-20 1.6E-24 192.7 14.7 117 827-943 32-153 (170)
96 3rfs_A Internalin B, repeat mo 99.8 7.2E-20 2.5E-24 207.4 15.5 183 190-384 62-244 (272)
97 2r9u_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 189.6 15.4 148 741-942 3-158 (174)
98 2xwt_C Thyrotropin receptor; s 99.8 1.5E-19 5.1E-24 200.7 14.3 196 339-538 32-236 (239)
99 3goz_A Leucine-rich repeat-con 99.8 1.4E-20 4.9E-25 222.7 3.6 251 269-541 3-297 (362)
100 3goz_A Leucine-rich repeat-con 99.8 2.3E-19 8E-24 212.2 11.0 255 220-496 2-299 (362)
101 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.8E-23 201.3 15.7 242 392-670 25-272 (308)
102 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 205.6 14.7 238 194-466 12-255 (350)
103 1h6u_A Internalin H; cell adhe 99.8 5.3E-18 1.8E-22 195.6 18.7 83 213-301 38-120 (308)
104 3m19_A Variable lymphocyte rec 99.8 1.1E-17 3.9E-22 186.9 20.3 181 191-377 14-194 (251)
105 4glp_A Monocyte differentiatio 99.8 5.9E-19 2E-23 204.0 10.0 131 190-327 168-307 (310)
106 4fs7_A Uncharacterized protein 99.7 5.6E-17 1.9E-21 194.0 21.6 315 60-418 60-374 (394)
107 2ca6_A RAN GTPase-activating p 99.7 8.8E-19 3E-23 209.3 5.6 90 211-300 27-134 (386)
108 2ca6_A RAN GTPase-activating p 99.7 1E-18 3.4E-23 208.8 5.3 136 362-497 159-319 (386)
109 4fdw_A Leucine rich hypothetic 99.7 1.3E-16 4.6E-21 189.9 22.7 266 67-372 109-380 (401)
110 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.9E-22 193.2 12.1 203 287-517 90-306 (310)
111 2ast_B S-phase kinase-associat 99.7 7.4E-18 2.5E-22 197.2 10.7 156 312-467 91-257 (336)
112 2o6s_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 177.1 14.2 190 4-241 1-190 (208)
113 2ast_B S-phase kinase-associat 99.7 8E-18 2.7E-22 196.9 9.2 130 240-372 70-205 (336)
114 3cvr_A Invasion plasmid antige 99.7 5.1E-17 1.8E-21 201.0 16.8 215 411-673 60-290 (571)
115 4fs7_A Uncharacterized protein 99.7 2.1E-16 7E-21 189.1 20.0 325 189-533 69-393 (394)
116 4fdw_A Leucine rich hypothetic 99.7 3.7E-16 1.3E-20 186.1 21.9 260 126-418 113-378 (401)
117 3sb4_A Hypothetical leucine ri 99.7 2.6E-17 8.8E-22 191.9 10.3 218 287-512 100-328 (329)
118 3ub2_A TOLL/interleukin-1 rece 99.7 6.3E-18 2.2E-22 169.3 2.5 130 1024-1195 8-138 (146)
119 3sb4_A Hypothetical leucine ri 99.7 4.2E-17 1.4E-21 190.1 9.9 218 190-416 100-327 (329)
120 2ifg_A High affinity nerve gro 99.7 2.1E-16 7.2E-21 185.7 15.1 116 824-942 30-146 (347)
121 3cvr_A Invasion plasmid antige 99.6 5.1E-16 1.7E-20 192.1 15.3 189 241-456 60-253 (571)
122 1h6t_A Internalin B; cell adhe 99.6 8E-16 2.7E-20 175.7 15.3 170 336-541 44-213 (291)
123 1h6t_A Internalin B; cell adhe 99.6 1E-15 3.5E-20 174.8 15.8 172 311-495 43-214 (291)
124 2o6r_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 160.5 13.7 113 757-890 29-141 (177)
125 2xot_A Amphoterin-induced prot 99.6 1.4E-15 4.9E-20 179.5 14.9 177 193-375 20-202 (361)
126 4gt6_A Cell surface protein; l 99.6 2.1E-14 7E-19 171.7 24.9 337 60-444 52-389 (394)
127 4gt6_A Cell surface protein; l 99.6 9.9E-15 3.4E-19 174.5 21.6 321 203-538 51-388 (394)
128 1m9s_A Internalin B; cell inva 99.6 2.4E-15 8.3E-20 188.3 15.1 174 190-380 42-215 (605)
129 2v9t_B SLIT homolog 2 protein 99.6 5.8E-15 2E-19 161.1 16.1 152 193-350 13-164 (220)
130 2v70_A SLIT-2, SLIT homolog 2 99.6 8.9E-15 3E-19 159.7 16.1 152 194-351 14-166 (220)
131 1m9s_A Internalin B; cell inva 99.6 4.8E-15 1.6E-19 185.6 15.5 150 336-496 63-212 (605)
132 2wfh_A SLIT homolog 2 protein 99.6 7.7E-15 2.6E-19 156.5 14.8 173 531-723 13-187 (193)
133 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.6E-19 156.2 12.6 154 123-302 41-195 (197)
134 3e6j_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 156.3 16.1 148 317-467 22-169 (229)
135 1w8a_A SLIT protein; signaling 99.5 2.6E-14 8.9E-19 152.4 14.0 174 531-722 11-186 (192)
136 4ezg_A Putative uncharacterize 99.5 2.5E-14 8.6E-19 153.2 13.7 152 311-469 41-193 (197)
137 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.7E-19 163.6 11.0 171 433-638 19-189 (263)
138 1xeu_A Internalin C; cellular 99.5 6.5E-15 2.2E-19 165.5 9.0 150 334-495 37-186 (263)
139 4h09_A Hypothetical leucine ri 99.5 2.1E-12 7.2E-17 153.5 25.2 287 67-393 42-340 (379)
140 2ell_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 147.7 8.0 136 772-910 19-160 (168)
141 4h09_A Hypothetical leucine ri 99.5 2.3E-12 8E-17 153.1 23.1 314 91-481 42-356 (379)
142 1dce_A Protein (RAB geranylger 99.4 1.1E-15 3.9E-20 190.1 -8.9 216 261-511 346-566 (567)
143 1dce_A Protein (RAB geranylger 99.4 4.5E-15 1.5E-19 184.7 -5.6 120 411-534 442-566 (567)
144 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.9E-18 143.8 7.1 131 776-910 18-153 (176)
145 2je0_A Acidic leucine-rich nuc 99.4 1.5E-13 5.2E-18 139.9 6.5 128 776-906 16-149 (149)
146 4b8c_D Glucose-repressible alc 99.4 9.9E-14 3.4E-18 178.2 3.8 122 117-260 215-336 (727)
147 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.6E-17 136.6 10.3 131 410-542 24-161 (168)
148 4b8c_D Glucose-repressible alc 99.4 2.9E-13 9.9E-18 173.8 6.3 151 403-560 217-369 (727)
149 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 7.7E-17 135.2 8.7 111 383-495 16-127 (176)
150 3rfe_A Platelet glycoprotein I 99.3 5.9E-12 2E-16 124.0 10.5 48 896-945 54-101 (130)
151 2je0_A Acidic leucine-rich nuc 99.3 8.2E-12 2.8E-16 127.0 10.4 104 359-464 39-147 (149)
152 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 121.0 12.2 107 192-302 10-116 (170)
153 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.3E-15 120.2 12.3 106 193-302 14-119 (174)
154 1ds9_A Outer arm dynein; leuci 99.1 6.3E-13 2.2E-17 142.4 -6.9 133 777-915 23-158 (198)
155 1ds9_A Outer arm dynein; leuci 99.1 8.4E-13 2.9E-17 141.4 -7.4 112 381-496 43-155 (198)
156 3un9_A NLR family member X1; l 99.0 1.4E-10 4.7E-15 136.7 3.0 136 362-497 101-255 (372)
157 3ozi_A L6TR; plant TIR domain, 99.0 5.2E-10 1.8E-14 115.7 7.0 87 1035-1159 44-132 (204)
158 2ifg_A High affinity nerve gro 99.0 9.3E-10 3.2E-14 128.8 9.8 130 555-701 13-146 (347)
159 3un9_A NLR family member X1; l 98.9 1.7E-10 5.7E-15 135.9 2.3 136 314-449 101-255 (372)
160 3h16_A TIR protein; bacteria T 98.7 1.2E-09 4.2E-14 110.9 0.5 97 1026-1160 20-116 (154)
161 3jrn_A AT1G72930 protein; TIR 98.7 4.1E-09 1.4E-13 107.4 3.2 93 1028-1159 10-104 (176)
162 2ra8_A Uncharacterized protein 98.5 1.4E-07 4.8E-12 110.0 6.9 135 404-541 166-320 (362)
163 3rfe_A Platelet glycoprotein I 98.4 2.8E-07 9.7E-12 90.4 5.4 101 579-719 12-114 (130)
164 2ra8_A Uncharacterized protein 98.3 8.1E-07 2.8E-11 103.5 8.6 82 456-539 251-341 (362)
165 1io0_A Tropomodulin; LRR prote 98.0 5.8E-06 2E-10 86.8 6.6 65 405-469 31-105 (185)
166 3rw6_A Nuclear RNA export fact 97.9 1.3E-06 4.4E-11 96.6 -1.2 90 821-911 137-234 (267)
167 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4.1E-10 84.3 4.6 61 409-469 92-163 (185)
168 3rw6_A Nuclear RNA export fact 97.6 1.2E-05 4.1E-10 88.8 1.5 106 797-903 137-257 (267)
169 3e4g_A ATP synthase subunit S, 97.3 7.8E-05 2.7E-09 76.3 3.2 82 434-515 62-149 (176)
170 3e4g_A ATP synthase subunit S, 97.3 0.00016 5.6E-09 73.9 5.4 81 387-467 62-149 (176)
171 2j67_A TOLL like receptor 10; 97.0 0.00019 6.5E-09 73.9 1.7 43 1083-1126 86-133 (178)
172 1t3g_A X-linked interleukin-1 96.9 0.00047 1.6E-08 69.7 4.2 42 1083-1124 63-109 (159)
173 1fyx_A TOLL-like receptor 2; b 96.9 0.00011 3.7E-09 73.6 -0.8 42 1083-1124 56-101 (149)
174 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0035 1.2E-07 65.3 6.5 63 407-469 38-110 (197)
175 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0035 1.2E-07 65.3 5.8 108 480-587 40-169 (197)
176 2js7_A Myeloid differentiation 96.0 0.0017 5.7E-08 65.7 1.1 66 1083-1149 66-152 (160)
177 3ub2_A TOLL/interleukin-1 rece 95.9 0.00056 1.9E-08 68.0 -2.7 41 1083-1124 60-104 (146)
178 3ozi_A L6TR; plant TIR domain, 93.8 0.029 9.9E-07 58.1 3.2 42 1083-1124 85-129 (204)
179 3jrn_A AT1G72930 protein; TIR 93.3 0.05 1.7E-06 55.3 3.9 49 1083-1131 58-112 (176)
180 3h16_A TIR protein; bacteria T 91.6 0.043 1.5E-06 55.0 0.8 32 1083-1115 69-100 (154)
181 2lz0_A Uncharacterized protein 90.9 0.23 7.7E-06 45.5 4.9 50 786-836 5-54 (100)
182 2lz0_A Uncharacterized protein 88.5 0.52 1.8E-05 43.1 5.3 48 811-859 6-53 (100)
183 3hyn_A Putative signal transdu 35.7 40 0.0014 33.8 5.0 48 1108-1159 71-118 (189)
No 1
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-82 Score=836.95 Aligned_cols=757 Identities=23% Similarity=0.311 Sum_probs=481.9
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCC-CCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI-SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISE 268 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~ 268 (1344)
.++|++|||++|.++.+.+. .|.++++|++|+|++|.. ..+.|.+|.++++|++|+|++|.+..+++..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 45677777777777776555 677777777777777743 3344667777777777777777777776666777777777
Q ss_pred EEcccCccccc-C-hhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCC--CcccEEE
Q psy16377 269 IYAQKNSLVEL-S-RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDL--VFLQRLD 344 (1344)
Q Consensus 269 L~L~~n~l~~l-~-~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~ 344 (1344)
|+|++|.+... + ...|.++++|++|+|++|.+.+. .....|.++++|+.|++++|.+..+.+..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCccccc-ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 77777777652 2 22356777777777777776652 112456677777777777777776666666655 6677777
Q ss_pred ecCCCccccchhhhcCCCC------ccEEEccCCcccccccccccC---CCceeEEEccCC---------cCCCCChhhh
Q psy16377 345 LRNNSIGYIEDNAFLSLYN------LHTIYLSENRIHHITAHLFNG---LYVLSKLTLSNN---------LLVNIDSKAF 406 (1344)
Q Consensus 345 Ls~n~l~~i~~~~f~~l~~------L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~Ls~n---------~l~~~~~~~~ 406 (1344)
++.|.+....+..+..+++ |+.|++++|.+.+..+..+.. ...++.|.+..+ .+.......|
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 7777665544333333333 666667666665544433322 134555555422 2222222233
Q ss_pred cCC--CCCcEEEccCCCCCcc-chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCc
Q psy16377 407 KNC--SALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483 (1344)
Q Consensus 407 ~~l--~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 483 (1344)
.++ ++|+.|++++|.+..+ +..+..+++|+.|+|++|.+.++.+..|.++++|+.|++++|.++.+.+..|.++++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 332 3455555555554433 2344445555555555555555544455555555555555555544444444555555
Q ss_pred cEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCC
Q psy16377 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYIS 563 (1344)
Q Consensus 484 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~ 563 (1344)
+.|++++|++..+.+..|.. +++|+.|++++|.++.++. .++|+.|++++|.++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~-----------------------l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKF-----------------------LEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV 394 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCS-----------------------CCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC
T ss_pred CEEECCCCCCCccChhhhcC-----------------------CCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc
Confidence 55555555554444444444 4445555555554443322 345555666666665
Q ss_pred CCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccc
Q psy16377 564 SLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643 (1344)
Q Consensus 564 ~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~ 643 (1344)
.++.. ..+++.|++++|++.++.... .+.++++|+.|++++|+++++.....
T Consensus 395 ~l~~~-----~~~l~~L~ls~N~l~~l~~~~---------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~-- 446 (844)
T 3j0a_A 395 TLPKI-----NLTANLIHLSENRLENLDILY---------------------FLLRVPHLQILILNQNRFSSCSGDQT-- 446 (844)
T ss_dssp CCCCC-----CTTCCEEECCSCCCCSSTTHH---------------------HHTTCTTCCEEEEESCCCCCCCSSSS--
T ss_pred ccccc-----ccccceeecccCccccCchhh---------------------hhhcCCccceeeCCCCcccccccccc--
Confidence 55431 246777777777776643211 12345666777776666553211000
Q ss_pred cCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCC
Q psy16377 644 KPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYD 723 (1344)
Q Consensus 644 ~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~ 723 (1344)
T Consensus 447 -------------------------------------------------------------------------------- 446 (844)
T 3j0a_A 447 -------------------------------------------------------------------------------- 446 (844)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCc
Q psy16377 724 IHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803 (1344)
Q Consensus 724 ~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L 803 (1344)
+.. ...++.|+|++|.++.+...
T Consensus 447 ------------------------------------------------~~~-~~~L~~L~Ls~N~l~~~~~~-------- 469 (844)
T 3j0a_A 447 ------------------------------------------------PSE-NPSLEQLFLGENMLQLAWET-------- 469 (844)
T ss_dssp ------------------------------------------------SCS-CTTCCBCEEESCCCSSSCCS--------
T ss_pred ------------------------------------------------ccc-CCccccccCCCCcccccccc--------
Confidence 000 01233344444444322211
Q ss_pred cEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCC
Q psy16377 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883 (1344)
Q Consensus 804 ~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N 883 (1344)
.+.+..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++++..|. ++|++|+|++|
T Consensus 470 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 470 -----------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp -----------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred -----------ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 12234677888999999999999999999999999999999999999999988887 89999999999
Q ss_pred CCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCC-CCCeeecCCCCCCCccccccCCcccccCcc
Q psy16377 884 RLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD-GLDISCVIDESSPPIRKEIDLNSTTCTEYY 962 (1344)
Q Consensus 884 ~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~-~~~~~C~~~~~~~~~~~~~~~~~~~C~~~~ 962 (1344)
+|+.+++..+ .+|+.|++++|||.|+|+ +.||..|+......+.+ ..++.|..|....+ ....++....|....
T Consensus 537 ~l~~~~~~~~---~~L~~l~l~~Np~~C~c~-~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g-~~l~~~~~~~C~~~~ 611 (844)
T 3j0a_A 537 QLLAPNPDVF---VSLSVLDITHNKFICECE-LSTFINWLNHTNVTIAGPPADIYCVYPDSFSG-VSLFSLSTEGCDEEE 611 (844)
T ss_dssp CCCCCCSCCC---SSCCEEEEEEECCCCSSS-CCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCS-CCTTTCCCCCC----
T ss_pred cCCCCChhHh---CCcCEEEecCCCcccccc-cHHHHHHHHhcCcccccccccCccCCchhhCC-CccccCccccCCchh
Confidence 9999988766 478999999999999999 68999999876655544 47799998876443 234555566787532
Q ss_pred cccceeeeeccccchhHHHHHHHHHHHHHHHHHhhhhcccceeeeeeeccceeeeee----cccCCCccCCccCCCCchh
Q psy16377 963 ATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNF----KATSSKHFGEDREKLPKDE 1038 (1344)
Q Consensus 963 ~~~~~~~~~~~~~~~~~lv~~lv~~~v~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~ 1038 (1344)
... . ..+ .+++++.++++++ +++++++++++.+.+++|.+...+++.. ....++.||++..+.++|+
T Consensus 612 ~~~----~---~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~yd~fisy~~~d~ 682 (844)
T 3j0a_A 612 VLK----S---LKF-SLFIVCTVTLTLF-LMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDF 682 (844)
T ss_dssp -------------C-HHHHHHHHHHHHH-HHTTTSHHHHC----------------CCCGGGSSSCCCCSEEEECCSTTH
T ss_pred hcc----c---cce-ehhHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHHHHHHHhccccccccccceeccEEEEeeCCcH
Confidence 110 0 001 1111111111111 1111222222222222232222222211 1234567888888889999
Q ss_pred HHHHHHHHhhhhc---CCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377 1039 EFVLQSIVAELEH---GNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus 1039 ~~v~~~l~~~Le~---~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
+||.++|++.||+ ++++||+|+|+|||.||.+++ |+|.+||+
T Consensus 683 ~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~-----------------------------------~~i~~~i~ 727 (844)
T 3j0a_A 683 TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRI-----------------------------------ANIQDAIW 727 (844)
T ss_dssp HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHH-----------------------------------HHHHHHHH
Confidence 9999999999998 378999999999999999999 99999999
Q ss_pred hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccc--hhhHHHHhhhccEEEeCc-----hhhH
Q psy16377 1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAES--DIELKPYLKSCMKIRWGE-----KRFW 1188 (1344)
Q Consensus 1116 ~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~--~~~l~~~l~~~~~l~w~~-----~~Fw 1188 (1344)
+|||+|+|+|++|++++||++||+.|++++++++++++|+|+++++++..+ +++||++|+++|||+|++ ++||
T Consensus 728 ~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~l~~~~~~~~~l~w~~~~~~~~~Fw 807 (844)
T 3j0a_A 728 NSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFL 807 (844)
T ss_dssp HSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCSSSCCSCSSTTHHHHTTCCCCCCSSSTTTTHHH
T ss_pred HhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCChHHhhhhHHHHHHHhhCCeeeCCCCchhHHHHH
Confidence 999999999999999999999999999999999999999999999998876 579999999999999976 6999
Q ss_pred HHhHhhcCCCCcC
Q psy16377 1189 ERLRYAMPTCDNS 1201 (1344)
Q Consensus 1189 ~~l~~~~p~~~~~ 1201 (1344)
++||||||.+++.
T Consensus 808 ~~l~~al~~~~~~ 820 (844)
T 3j0a_A 808 HKLSQQILKKEKE 820 (844)
T ss_dssp HHHTTTTTSCCCC
T ss_pred HHHHHHhcccccc
Confidence 9999999987543
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-58 Score=592.53 Aligned_cols=628 Identities=24% Similarity=0.295 Sum_probs=453.0
Q ss_pred cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEccc
Q psy16377 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273 (1344)
Q Consensus 194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~ 273 (1344)
+.+|.++++++.+|.. +. ++|++|+|++|.+.++.+..|.++++|++|++++|.+..+++..|.++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~--~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDD--LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSC--SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccc--cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 5788888888888863 43 6888888888888888777888888888899888888888888888888888888888
Q ss_pred CcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCcccc
Q psy16377 274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI 353 (1344)
Q Consensus 274 n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i 353 (1344)
|.+..+++..|.++++|++|++++|.+.+ +....|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CccCccChhhhccCCCCCEEECCCCccCc--cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 88888888778888888888888888876 5566788888888888888888888777788888888888888888877
Q ss_pred chhhhc--CCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhh---cCCCCCcEEEccCCCCCcc-ch
Q psy16377 354 EDNAFL--SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF---KNCSALKELDLSSNAIVEI-PS 427 (1344)
Q Consensus 354 ~~~~f~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~l-p~ 427 (1344)
.+..|. .+++|+.|++++|.+.+..+..|..+.+|+.|++.++.+.......+ -..++|+.|++++|.+..+ |.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 766553 45788888888888888888888888888888888876643221111 1347888888888888744 45
Q ss_pred hhcCCCC--ccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCc---------cc
Q psy16377 428 ALSELPF--LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH---------QI 496 (1344)
Q Consensus 428 ~l~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~---------~~ 496 (1344)
.+..++. |++|++++|.+.++.+..|..+++|+.|++++|.+..+.+..|.++++|+.|++++|... .+
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 6666544 888888888888888778888888888888888887777777888888888888876433 23
Q ss_pred ccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCc--cccCCCcC----CCccEEEcCCCcCCCCCccc
Q psy16377 497 EIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLV--WFDYAMVP----GNLKWLDIHGNYISSLNNYY 569 (1344)
Q Consensus 497 ~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~--~~~~~~lp----~~L~~L~Ls~n~l~~l~~~~ 569 (1344)
....|..+++|+.|++++|.++.++ ..|.++++|+.|++++|.+. .++...+. .+|+.|++++|.++.+.. .
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-~ 399 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-D 399 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-T
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-h
Confidence 3346777888888888888887764 45778888888888887642 22211111 355666666665554432 1
Q ss_pred cccCCCcccEEECCCCccccccc-ccc--cCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCC
Q psy16377 570 EIKDGLSIKNLDASHNRILEISE-LSI--PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646 (1344)
Q Consensus 570 ~l~~~~~L~~L~Ls~N~l~~~~~-~~~--~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~ 646 (1344)
.+..+++|+.|++++|.+.+..+ ..+ ..+|++|++++|++.++.+..|..+++|+.|++++|.++.+...
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------- 472 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS------- 472 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-------
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-------
Confidence 23445556666666665554221 112 13455555555555555555555555555555555544321100
Q ss_pred CCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccc
Q psy16377 647 PQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHC 726 (1344)
Q Consensus 647 ~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~ 726 (1344)
+..
T Consensus 473 --------------------------------------------------------------------p~~--------- 475 (680)
T 1ziw_A 473 --------------------------------------------------------------------PSP--------- 475 (680)
T ss_dssp --------------------------------------------------------------------SCT---------
T ss_pred --------------------------------------------------------------------Ccc---------
Confidence 000
Q ss_pred ccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEE
Q psy16377 727 FALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806 (1344)
Q Consensus 727 ~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L 806 (1344)
+.. ...++.|++++|+++.+++.+|.++++|+.|
T Consensus 476 -----------------------------------------~~~-----l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 476 -----------------------------------------FQP-----LRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp -----------------------------------------TTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -----------------------------------------ccc-----CCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 000 1347889999999999999999999999999
Q ss_pred EccCCcccccccc--------hhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEE
Q psy16377 807 YVNNSQIEVILNQ--------TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878 (1344)
Q Consensus 807 ~l~~n~i~~i~~~--------~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 878 (1344)
++++|+++.+... .|.++++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 9999999987543 38899999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCccccccccc-CCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCC-CCeeecCCCCCCCccccccCCcc
Q psy16377 879 QLDGNRLKSFRAFDLN-TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG-LDISCVIDESSPPIRKEIDLNST 956 (1344)
Q Consensus 879 ~L~~N~l~~~~~~~l~-~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~-~~~~C~~~~~~~~~~~~~~~~~~ 956 (1344)
+|++|+|+.+++..+. .+++|+.|++++|||.|+|+.+.||.+|+++....+.+. .+++|..|....+ ....+++..
T Consensus 590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g-~~l~~~~~~ 668 (680)
T 1ziw_A 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG-FPVRLFDTS 668 (680)
T ss_dssp ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-------------------------------
T ss_pred ECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCC-CcccccChh
Confidence 9999999999998887 679999999999999999984489999997776666664 6799999875432 334555555
Q ss_pred ccc
Q psy16377 957 TCT 959 (1344)
Q Consensus 957 ~C~ 959 (1344)
.|.
T Consensus 669 ~~~ 671 (680)
T 1ziw_A 669 SCK 671 (680)
T ss_dssp ---
T ss_pred hcC
Confidence 554
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-58 Score=601.49 Aligned_cols=699 Identities=23% Similarity=0.271 Sum_probs=493.1
Q ss_pred cccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccC---CCcccccCCCCCCEEEeeCCcCCc
Q psy16377 9 SWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSS---ITTKSFQNIYSLEELKISNCKLVE 85 (1344)
Q Consensus 9 ~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~---l~~~~f~~l~~L~~L~Ls~~~i~~ 85 (1344)
.|....++|.|..|.|+ . .+++.|+|+++.+. +. ++ .+|.++++|+.++++.+.+..
T Consensus 32 ~W~~~~~~C~w~gv~C~-------~---------~~v~~L~L~~~~l~---g~~~~l~-~~l~~L~~L~~l~~~~~~~~~ 91 (768)
T 3rgz_A 32 DWSSNKNPCTFDGVTCR-------D---------DKVTSIDLSSKPLN---VGFSAVS-SSLLSLTGLESLFLSNSHING 91 (768)
T ss_dssp TCCTTSCGGGSTTEEEE-------T---------TEEEEEECTTSCCC---EEHHHHH-HHTTTCTTCCEEECTTSCEEE
T ss_pred CCCCCCCCcCCcceEEC-------C---------CcEEEEECCCCCcC---CccCccC-hhHhccCcccccCCcCCCcCC
Confidence 37545566778789996 1 24788999888763 33 54 578899999999999888766
Q ss_pred cChhhhcCCCCCCEEEcccccCcccCCcccccCCC--cCCCCCCCCEEEccCCCCCccCh-hhhcCCCCCCEEECCCCCC
Q psy16377 86 LPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG--SLDGLRELQVLNISSSNIKSISD-DVFCSLANIQTLNLSRNSI 162 (1344)
Q Consensus 86 l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~--~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~Ls~n~l 162 (1344)
++ ..|+.+++|++|+|++|.+.. .+|. .++++++|++|+|++|.+....+ ..+.++++|++|+|++|.+
T Consensus 92 l~-~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 92 SV-SGFKCSASLTSLDLSRNSLSG-------PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CC-CCCCCCTTCCEEECCSSEEEE-------EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred Cc-hhhccCCCCCEEECCCCcCCC-------cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 65 468999999999998776532 3455 78899999999999998875443 3347899999999999988
Q ss_pred CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242 (1344)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 242 (1344)
++.....+.. +.++++|++|++++|.+++..+ +..+++|++|+|++|.+.+..|. ++++++|
T Consensus 164 ~~~~~~~~~~--------------~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L 225 (768)
T 3rgz_A 164 SGANVVGWVL--------------SDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225 (768)
T ss_dssp EEETHHHHHH--------------TTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSC
T ss_pred CCcCChhhhh--------------hccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCC
Confidence 7655433210 2347889999999998876543 47889999999999999887776 8889999
Q ss_pred cEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccC-CCcccEEEc
Q psy16377 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIILNL 321 (1344)
Q Consensus 243 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~-l~~L~~L~L 321 (1344)
++|++++|.+....+..|..+++|++|++++|.+....+.. .+++|++|++++|.+++. + +..+.. +++|+.|++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~-i-p~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE-I-PDFLSGACDTLTGLDL 301 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEES-C-CCCSCTTCTTCSEEEC
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCc-c-CHHHHhhcCcCCEEEC
Confidence 99999999888776777888889999999988887544432 778888888888887642 2 333433 488888888
Q ss_pred cCCCCCccccccccCCCcccEEEecCCCcc-ccchhhhcCCCCccEEEccCCcccccccccccCCC-ceeEEEccCCcCC
Q psy16377 322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIG-YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY-VLSKLTLSNNLLV 399 (1344)
Q Consensus 322 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~ 399 (1344)
++|.+.+..+..|..+++|+.|++++|.+. .++...|..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 888888777778888888888888888876 66666678888888888888888777776676666 7888888888777
Q ss_pred CCChhhhcC--CCCCcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCccc
Q psy16377 400 NIDSKAFKN--CSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476 (1344)
Q Consensus 400 ~~~~~~~~~--l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 476 (1344)
+..+..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+....+..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 655555554 677888888888777 66777777778888888888777777777777777777777777775444445
Q ss_pred ccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-ChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555 (1344)
Q Consensus 477 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L 555 (1344)
+..+++|++|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.. .+|.
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~----- 532 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG----NIPA----- 532 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE----ECCG-----
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC----cCCH-----
Confidence 677777777777777777666666777777777777777776 456666666666666666666541 1121
Q ss_pred EcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcc
Q psy16377 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635 (1344)
Q Consensus 556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~ 635 (1344)
.+..+++|+.|++++|++++ .+|..+.....+..+++..+.
T Consensus 533 --------------~l~~l~~L~~L~Ls~N~l~g----------------------~ip~~~~~~~~~~~~~~~~~~--- 573 (768)
T 3rgz_A 533 --------------ELGDCRSLIWLDLNTNLFNG----------------------TIPAAMFKQSGKIAANFIAGK--- 573 (768)
T ss_dssp --------------GGGGCTTCCEEECCSSEEES----------------------BCCGGGGTTTTCBCCSTTCSC---
T ss_pred --------------HHcCCCCCCEEECCCCccCC----------------------cCChHHhcccchhhhhccccc---
Confidence 12234455555555555554 344444333333322221100
Q ss_pred cccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCC
Q psy16377 636 LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAP 715 (1344)
Q Consensus 636 l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~ 715 (1344)
...++.++.....|... .. .... ....+
T Consensus 574 -----------------~~~~~~~~~~~~~~~~~--~~---------------~~~~------------------~~~~~ 601 (768)
T 3rgz_A 574 -----------------RYVYIKNDGMKKECHGA--GN---------------LLEF------------------QGIRS 601 (768)
T ss_dssp -----------------EEEEEECCSCCTTCCSS--EE---------------EEEC------------------TTCCG
T ss_pred -----------------ccccccccccccccccc--cc---------------cccc------------------ccccc
Confidence 01111111111100000 00 0000 00000
Q ss_pred CCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCC
Q psy16377 716 SQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNH 795 (1344)
Q Consensus 716 ~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~ 795 (1344)
. .+..++ ....+++..|.+.+..+.
T Consensus 602 ~--------------------------------------------------~~~~l~-----~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 602 E--------------------------------------------------QLNRLS-----TRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp G--------------------------------------------------GGGGGG-----GTCCSCTTSCEEEEECCC
T ss_pred h--------------------------------------------------hhhccc-----cccccccccceecccCch
Confidence 0 000000 011122334555555556
Q ss_pred cCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCC
Q psy16377 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875 (1344)
Q Consensus 796 ~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 875 (1344)
.|.++++|+.|+|++|+++...+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 68889999999999999999889999999999999999999998889999999999999999999999989999999999
Q ss_pred CEEEccCCCCcccccccccCCCCCcEEEecCCcccCCC
Q psy16377 876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913 (1344)
Q Consensus 876 ~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C 913 (1344)
++|+|++|+|++..|.. ..+.++....+.|||.-|.-
T Consensus 707 ~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 99999999999855542 22344455567788888753
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.9e-55 Score=563.47 Aligned_cols=632 Identities=24% Similarity=0.332 Sum_probs=405.6
Q ss_pred EEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEE
Q psy16377 21 SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRL 100 (1344)
Q Consensus 21 ~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L 100 (1344)
.++|..+.++.+| ..+ + .++++|++++|.+ ..+++..|.++++|++|+|++|.+..+++.+|+++++|++|
T Consensus 8 ~~~cs~~~L~~ip-~~~---~-~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 8 VADCSHLKLTQVP-DDL---P-TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp EEECCSSCCSSCC-SCS---C-TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred eeECCCCCccccc-ccc---C-CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 6899999999998 443 2 6799999999998 45777889999999999999999999988899999999999
Q ss_pred EcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccC
Q psy16377 101 TINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180 (1344)
Q Consensus 101 ~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~ 180 (1344)
+|++|.+. .+.+..|.++++|++|+|++|.++.+++..|.++++|++|++++|.++.+....+
T Consensus 79 ~L~~n~l~-------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------- 141 (680)
T 1ziw_A 79 NLQHNELS-------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ---------- 141 (680)
T ss_dssp ECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS----------
T ss_pred ECCCCccC-------ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh----------
Confidence 99766553 2334468889999999999999988888788888888888888888776544322
Q ss_pred CCCccccCCCCcccEEECCCCCCCCCCCCccC--CCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChh
Q psy16377 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI--TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258 (1344)
Q Consensus 181 ~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 258 (1344)
.++++|++|++++|.++.++.. .+ ..+++|+.|++++|.+.++.+..|..+++|+.|+++++.+......
T Consensus 142 -------~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 142 -------VQLENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp -------SCCTTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred -------cccccCCEEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence 3467788888888877776543 22 3457788888888887777777777777788887777765421100
Q ss_pred h---hcCCCCCcEEEcccCcccccChhhhcCCCC--CCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCcccccc
Q psy16377 259 L---FSSCRDISEIYAQKNSLVELSRGLFHKLEQ--LLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT 333 (1344)
Q Consensus 259 ~---f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~--L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 333 (1344)
. ....++|+.|++++|.+..+++..|..++. |+.|++++|.+.+ +....|..+++|+.|++++|.+.++.+..
T Consensus 214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (680)
T 1ziw_A 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291 (680)
T ss_dssp HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc--cCcccccCcccccEeeCCCCccCccChhh
Confidence 0 012366777777777777666666665543 7777777776665 44455666777777777777777666666
Q ss_pred ccCCCcccEEEecCCCcc---------ccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCC--CCC
Q psy16377 334 FKDLVFLQRLDLRNNSIG---------YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV--NID 402 (1344)
Q Consensus 334 ~~~l~~L~~L~Ls~n~l~---------~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~ 402 (1344)
|.++++|+.|++++|... .+....|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .+.
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence 667777777777665322 233334555666666666666666655555566666666666655432 222
Q ss_pred hhhhcCC--CCCcEEEccCCCCCcc-chhhcCCCCccEEEccCCCCCc-cCcchhcCCCCCcEEEcccCCCCCCCccccc
Q psy16377 403 SKAFKNC--SALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISK-IENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478 (1344)
Q Consensus 403 ~~~~~~l--~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 478 (1344)
...|..+ ++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+ +.+..|.++++|+.|++++|.+..+....|.
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 451 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence 2223222 3555666666555543 3445555556666666555554 2234555555555666655555555555555
Q ss_pred CCCCccEEEcCCCcCcc--cccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377 479 ELPSLEVLNLSKNKIHQ--IEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555 (1344)
Q Consensus 479 ~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L 555 (1344)
.+++|+.|++++|.+.. ..+..|..+++|+.|++++|.++.++ ..|.++++|+.|++++|+++.++...+|..
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---- 527 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG---- 527 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS----
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC----
Confidence 55555555555555542 23344555555555555555555544 235555555555555555554433333210
Q ss_pred EcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCC
Q psy16377 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI 633 (1344)
Q Consensus 556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l 633 (1344)
....+..+++|+.|++++|+++.+++..+. .+|+.|++++|+++++.+..|.++++|+.|++++|+|
T Consensus 528 -----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 528 -----------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp -----------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred -----------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 011255678899999999999988765544 5899999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCeEEcCCCcccccccC-ccccccccCCCCccccccCcccc-CCCceeecccCCCCcccccc
Q psy16377 634 TKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSM-DWLPIINNNTSPSMERQYPKIMD-LDNVVCKMTYSRGSTHLPAS 711 (1344)
Q Consensus 634 ~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~-~~l~~~~~~~~~~~~~~~~~~~~-l~~~~C~~~~~~~~~~~~l~ 711 (1344)
++++...+. +....+..+++++|||.|+|.+ .||..+-+.. ...+.+ ...+.|..|.. .++.++.
T Consensus 597 ~~~~~~~~~----~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~-------~~~~~~~~~~~~C~~p~~--~~g~~l~ 663 (680)
T 1ziw_A 597 TSVEKKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNWINET-------HTNIPELSSHYLCNTPPH--YHGFPVR 663 (680)
T ss_dssp CBCCHHHHH----HHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----------------------------------
T ss_pred CccChhHhc----ccccccCEEEccCCCcccCCccHHHHHHHHHhc-------CcccccccCCcEECCchH--HCCCccc
Confidence 998876542 0224688999999999999996 8887542211 112233 24678887643 3344555
Q ss_pred ccCCC
Q psy16377 712 EAAPS 716 (1344)
Q Consensus 712 ~~~~~ 716 (1344)
++.+.
T Consensus 664 ~~~~~ 668 (680)
T 1ziw_A 664 LFDTS 668 (680)
T ss_dssp -----
T ss_pred ccChh
Confidence 54433
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-55 Score=575.62 Aligned_cols=655 Identities=20% Similarity=0.168 Sum_probs=427.9
Q ss_pred CCCCEEEeeCCcCCc----cChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChh--
Q psy16377 71 YSLEELKISNCKLVE----LPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD-- 144 (1344)
Q Consensus 71 ~~L~~L~Ls~~~i~~----l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~-- 144 (1344)
.+++.|+|+++.+.. ++ .+|.++++|+.++++.+.+ ..+|..|+.+++|++|+|++|.+.+..+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~--------~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHI--------NGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 120 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCE--------EECCCCCCCCTTCCEEECCSSEEEEEGGGGG
T ss_pred CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCc--------CCCchhhccCCCCCEEECCCCcCCCcCCChH
Confidence 568899999988875 44 5788889999998864432 33567899999999999999988854444
Q ss_pred hhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCcc---CCCCCCCCEE
Q psy16377 145 VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSG---ITKFRRLQNL 221 (1344)
Q Consensus 145 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~---l~~l~~L~~L 221 (1344)
.++++++|++|+|++|.+.......+ ..++++|++|+|++|.+++..+. . +.++++|++|
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~----------------~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSG----------------GLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHL 183 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCS----------------CCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEE
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHH----------------hccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEE
Confidence 68889999999999987764322211 13478888888888888776543 3 6788888888
Q ss_pred EccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCC
Q psy16377 222 HLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301 (1344)
Q Consensus 222 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 301 (1344)
++++|.+.+..+ +..+++|++|++++|.+...++. |.++++|++|++++|.+....+..|.++++|++|++++|.+.
T Consensus 184 ~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp ECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred ECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence 888888877654 37788888888888888775554 677888888888888887666666778888888888888776
Q ss_pred CCCCCcccccCCCcccEEEccCCCCCccccccccC-CCcccEEEecCCCccccchhhhcCCCCccEEEccCCccccccc-
Q psy16377 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD-LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA- 379 (1344)
Q Consensus 302 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~- 379 (1344)
+. + +. ..+++|++|++++|.+++..+..+.. +++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+
T Consensus 261 ~~-~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 261 GP-I-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp ES-C-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred Cc-c-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 42 1 11 15677777777777766544444444 3666666666666665555556666666666666666653333
Q ss_pred ccccCCCceeEEEccCCcCCCCChhhhcCCC-CCcEEEccCCCCC-ccchhhcC--CCCccEEEccCCCCCccCcchhcC
Q psy16377 380 HLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS-ALKELDLSSNAIV-EIPSALSE--LPFLKTLDLGENQISKIENGSFKN 455 (1344)
Q Consensus 380 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~--l~~L~~L~Ls~n~i~~~~~~~~~~ 455 (1344)
..+.++++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+.. +++|++|++++|.+++..+..|..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 2355566666666666665544455555544 5666666655554 34444433 455555555555555555555555
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-ChhhHhhcCCCCcEEE
Q psy16377 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLN 534 (1344)
Q Consensus 456 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~ 534 (1344)
+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l------- 489 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC------- 489 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-------
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-------
Confidence 555555555555553333333445555555555555554444444444444444444444444 233333333
Q ss_pred cCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCcc
Q psy16377 535 LSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSV 612 (1344)
Q Consensus 535 Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~ 612 (1344)
++|+.|++++|++++..+..+. ++|++|+|++|++.+.
T Consensus 490 ----------------------------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 490 ----------------------------------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp ----------------------------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred ----------------------------------------CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 4455555555555544443332 4677777777777778
Q ss_pred CCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccC
Q psy16377 613 KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDL 692 (1344)
Q Consensus 613 ~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l 692 (1344)
.|..|.++++|+.|++++|.+++.-+..+.. ...+..+.+. ..
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-----~~~~~~~~~~--------------------------------~~ 572 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFI--------------------------------AG 572 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGT-----TTTCBCCSTT--------------------------------CS
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhc-----ccchhhhhcc--------------------------------cc
Confidence 8888999999999999999888533322100 0000000000 00
Q ss_pred CCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCC
Q psy16377 693 DNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVP 772 (1344)
Q Consensus 693 ~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p 772 (1344)
... ..+. +......+
T Consensus 573 ~~~---------------~~~~--------------------------------------------------~~~~~~~~ 587 (768)
T 3rgz_A 573 KRY---------------VYIK--------------------------------------------------NDGMKKEC 587 (768)
T ss_dssp CEE---------------EEEE--------------------------------------------------CCSCCTTC
T ss_pred ccc---------------cccc--------------------------------------------------cccccccc
Confidence 000 0000 00000000
Q ss_pred CCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccc
Q psy16377 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLS 852 (1344)
Q Consensus 773 ~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 852 (1344)
. .....+. +..+....+..+..+..+++..|.+....+..|..+++|+.|||++|++++..|..|.++++|+
T Consensus 588 ~---~~~~~~~-----~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 588 H---GAGNLLE-----FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp C---SSEEEEE-----CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred c---ccccccc-----cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence 0 0000011 1112222233445666777888888888889999999999999999999998899999999999
Q ss_pred eeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChh
Q psy16377 853 ELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCAT 915 (1344)
Q Consensus 853 ~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~ 915 (1344)
.|+|++|+|++..|..|..+++|++|+|++|+++...+..+..+++|++|++++|+++..-+.
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999988899999999999999999999998888899999999999999999987663
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-51 Score=524.60 Aligned_cols=562 Identities=19% Similarity=0.237 Sum_probs=402.4
Q ss_pred CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCC
Q psy16377 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298 (1344)
Q Consensus 219 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n 298 (1344)
+.++.++..++.+ |..+. ..+++|++++|.++.+++..|.++++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 15 ~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcccC-cCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 4677777777665 44443 36788888888888877777788888888888888887777777778888888888888
Q ss_pred CCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc
Q psy16377 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378 (1344)
Q Consensus 299 ~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~ 378 (1344)
.+.+ +.+..|.++++|++|++++|.++.+.+..|..+++|++|++++|.+..+....+..+++|+.|++++|.+.+..
T Consensus 92 ~l~~--~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 92 PLIF--MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCSE--ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred cccc--cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 7765 44566777778888888887777776667777777777777777777665445556777777777777777776
Q ss_pred cccccCCCcee--EEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCC-----CccCcc
Q psy16377 379 AHLFNGLYVLS--KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQI-----SKIENG 451 (1344)
Q Consensus 379 ~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i-----~~~~~~ 451 (1344)
+..|..+++|+ .|++++|.+.++.+..|.. .+|+.|++++|. .++..+..+..+....+.-..+ ..+...
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch--hHHHHhhhccccchhheechhhccccccccChh
Confidence 76677777777 6777777777776666543 467777777765 3444444444444333322211 122233
Q ss_pred hhcCCC--CCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCCh-hhHhhcCC
Q psy16377 452 SFKNLQ--QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLA 528 (1344)
Q Consensus 452 ~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~ 528 (1344)
.|.++. +|+.|++++|.++.++...|..+++|++|++++|+++.++. .+..+++|+.|++++|.++.+ +..+..++
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccC
Confidence 333332 45666666666666655556666666666666666654432 355555666666666665554 33455555
Q ss_pred CCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccc--cccc--cCcccEEEc
Q psy16377 529 QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIS--ELSI--PNSVEVLFI 604 (1344)
Q Consensus 529 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~--~~~~--~~sL~~L~L 604 (1344)
+|+.|++++|.+.. .++. ..+..+++|++|++++|.+.+.. +..+ .++|++|++
T Consensus 326 ~L~~L~l~~n~~~~---------------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 326 SLTHLSIKGNTKRL---------------------ELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp TCSEEECCSCSSCC---------------------BCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc---------------------ccch-hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 55555555554431 1111 12344667778888887777654 2222 246777777
Q ss_pred CCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCcccc
Q psy16377 605 NNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMER 684 (1344)
Q Consensus 605 s~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~ 684 (1344)
++|.+.+..+..|.++++|+.|++++|.++...+...
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------------------------- 420 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP------------------------------------------- 420 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-------------------------------------------
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh-------------------------------------------
Confidence 7777777777777778888888887776654221000
Q ss_pred ccCccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcC
Q psy16377 685 QYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCS 764 (1344)
Q Consensus 685 ~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs 764 (1344)
T Consensus 421 -------------------------------------------------------------------------------- 420 (606)
T 3t6q_A 421 -------------------------------------------------------------------------------- 420 (606)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccccc---ccchhcCCCccceeecccccccccC
Q psy16377 765 EQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI---LNQTFNGLSSLQVLHLENNLITHFY 841 (1344)
Q Consensus 765 ~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i---~~~~f~~l~~L~~L~Ls~N~l~~l~ 841 (1344)
+.. ...++.|++++|.+..+.+..|.++++|+.|++++|+++.. ....|.++++|++|+|++|+++.+.
T Consensus 421 ---~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 421 ---FQN-----LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ---TTT-----CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred ---hhC-----cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 000 02467888999999888888899999999999999999873 3367999999999999999999999
Q ss_pred cccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHH
Q psy16377 842 GYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921 (1344)
Q Consensus 842 ~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~ 921 (1344)
+..|.++++|++|+|++|+|+.+++..|..+++| +|+|++|+++.+++..+..+++|+.|++++|||.|+|+ ..||..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~-~~~~~~ 570 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS-NIYFLE 570 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG-GHHHHH
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC-cHHHHH
Confidence 9999999999999999999999999999999999 99999999999999988889999999999999999999 589999
Q ss_pred HHhhcCCccCCCCCeeecCCCCC
Q psy16377 922 WIIDNSNKVKDGLDISCVIDESS 944 (1344)
Q Consensus 922 w~~~~~~~v~~~~~~~C~~~~~~ 944 (1344)
|++++...+.+..+++|..|...
T Consensus 571 w~~~~~~~~~~~~~~~C~~p~~~ 593 (606)
T 3t6q_A 571 WYKENMQKLEDTEDTLCENPPLL 593 (606)
T ss_dssp HHHHCGGGEECGGGCBEEESGGG
T ss_pred HHHhCcccccCCCCCeeCCchHh
Confidence 99988777888889999988643
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-50 Score=514.23 Aligned_cols=573 Identities=23% Similarity=0.314 Sum_probs=361.7
Q ss_pred CEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcC
Q psy16377 153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA 232 (1344)
Q Consensus 153 ~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~ 232 (1344)
++++.+++.++.++... .++|++|+|++|.++.++.. .|.++++|++|+|++|.++++.
T Consensus 14 ~~~~c~~~~l~~ip~~~--------------------~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~ 72 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI--------------------PSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIE 72 (606)
T ss_dssp TEEECTTSCCSSCCTTS--------------------CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEEC
T ss_pred CceEccCCCcccCCCCC--------------------CCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccC
Confidence 45666666666665421 35778888888888877765 6788888888888888888877
Q ss_pred hhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccC
Q psy16377 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312 (1344)
Q Consensus 233 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~ 312 (1344)
|.+|.++++|++|+|++|.+..+++..|.++++|++|++++|.+..+++..|+++++|++|++++|.+.+..+ +..|.+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~ 151 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL-PAYFSN 151 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC-CGGGGT
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec-hHhHhh
Confidence 7778888888888888888888777777888888888888888877776667788888888888887765211 456777
Q ss_pred CCcccEEEccCCCCCccccccccCCCccc----EEEecCCCccccchhhhcCCCCccEEEccCCccc-ccccccccCCCc
Q psy16377 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQ----RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYV 387 (1344)
Q Consensus 313 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 387 (1344)
+++|++|++++|.++++.+..|+.+.+|+ .|++++|.+..+++..|... +|+.|++++|.+. +..+..+.+++.
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccc
Confidence 78888888888887777766666665554 67777777777777666554 7777777777765 345555666777
Q ss_pred eeEEEccCCcCCC------CChhhhcCCC--CCcEEEc-cCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCC
Q psy16377 388 LSKLTLSNNLLVN------IDSKAFKNCS--ALKELDL-SSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458 (1344)
Q Consensus 388 L~~L~Ls~n~l~~------~~~~~~~~l~--~L~~L~L-s~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 458 (1344)
|+.+.+..+.+.. .....+..+. .++.+++ ..+.+......+..+++|+.|++++|.+..+. .+..+++
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~ 308 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFK 308 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCC
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hcccccc
Confidence 7766664333221 1222222211 2333333 33333322122444445555555555444433 3444444
Q ss_pred CcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN 538 (1344)
Q Consensus 459 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n 538 (1344)
|+.|++++|.++.++. + .+++|+.|++++|+... .+ .+..+++|+.|++++|
T Consensus 309 L~~L~l~~n~l~~lp~--~-~l~~L~~L~l~~n~~~~-----------------------~~--~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 309 WQSLSIIRCQLKQFPT--L-DLPFLKSLTLTMNKGSI-----------------------SF--KKVALPSLSYLDLSRN 360 (606)
T ss_dssp CSEEEEESCCCSSCCC--C-CCSSCCEEEEESCSSCE-----------------------EC--CCCCCTTCCEEECCSS
T ss_pred CCEEEcccccCccccc--C-CCCccceeeccCCcCcc-----------------------ch--hhccCCCCCEEECcCC
Confidence 5555555554444441 2 44444444444442221 11 2334555555555555
Q ss_pred CCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccc-cccCcccEEEcCCCcCCccCC-CC
Q psy16377 539 HLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL-SIPNSVEVLFINNNLIKSVKP-HT 616 (1344)
Q Consensus 539 ~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~-~~~~sL~~L~Ls~N~i~~~~~-~~ 616 (1344)
.+...+. +| ..+..+++|+.|++++|.+.+++.. .-..+|+.|++++|++.+..+ ..
T Consensus 361 ~l~~~~~--~~-------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 361 ALSFSGC--CS-------------------YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CEEEEEE--CC-------------------HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ccCCCcc--hh-------------------hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhh
Confidence 5442210 00 0112233444444444444332210 000122223333333222222 23
Q ss_pred CCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCce
Q psy16377 617 FFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVV 696 (1344)
Q Consensus 617 f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 696 (1344)
|.++++|+.|+
T Consensus 420 ~~~l~~L~~L~--------------------------------------------------------------------- 430 (606)
T 3vq2_A 420 FLSLEKLLYLD--------------------------------------------------------------------- 430 (606)
T ss_dssp TTTCTTCCEEE---------------------------------------------------------------------
T ss_pred hhccccCCEEE---------------------------------------------------------------------
Confidence 34444444444
Q ss_pred eecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCC
Q psy16377 697 CKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP 776 (1344)
Q Consensus 697 C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip 776 (1344)
T Consensus 431 -------------------------------------------------------------------------------- 430 (606)
T 3vq2_A 431 -------------------------------------------------------------------------------- 430 (606)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCcccccCccccceee
Q psy16377 777 MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELY 855 (1344)
Q Consensus 777 ~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 855 (1344)
+++|.+..+.+..|.++++|+.|++++|+++. +.+..|.++++|++|+|++|+++.+.+..|.++++|++|+
T Consensus 431 -------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 431 -------ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp -------CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -------CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 44444444444456677788888888888887 5678899999999999999999999999999999999999
Q ss_pred ccccccccccCccccCCCCCCEEEccCCCCcccccccccCCC-CCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCC
Q psy16377 856 LQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNS-MLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGL 934 (1344)
Q Consensus 856 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~-~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~ 934 (1344)
|++|+|+++.+..|..+++|++|+|++|+|+.++.. +..++ +|++|++++|||.|+|+ +.||.+|++++...+.+..
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~-~~~~~~~l~~~~~~~~~~~ 581 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICE-HQKFLQWVKEQKQFLVNVE 581 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSST-THHHHTTTTTSSSSBSSGG
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCc-cHHHHHHHHcCcccccCCc
Confidence 999999999999999999999999999999999988 76775 69999999999999999 6999999988888888889
Q ss_pred CeeecCCCCCCCccccccCCcccc
Q psy16377 935 DISCVIDESSPPIRKEIDLNSTTC 958 (1344)
Q Consensus 935 ~~~C~~~~~~~~~~~~~~~~~~~C 958 (1344)
+++|..|....+ ....+++...|
T Consensus 582 ~~~C~~p~~~~~-~~l~~~~~~~c 604 (606)
T 3vq2_A 582 QMTCATPVEMNT-SLVLDFNNSTC 604 (606)
T ss_dssp GCCCC-------------------
T ss_pred cceeCCChHhCC-CEeeecccccC
Confidence 999998765332 33455555555
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=542.94 Aligned_cols=528 Identities=23% Similarity=0.270 Sum_probs=386.8
Q ss_pred cccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC-CCCCCCcchhhhccccccCCCCccccCCCCcc
Q psy16377 115 LDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS-IRDIDTLGFAVRRASAESNSGEKIECSGGMDL 193 (1344)
Q Consensus 115 l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L 193 (1344)
++.+|. -.++|++|||++|.|+.+.+..|.++++|++|+|++|. +..++... +.++++|
T Consensus 16 L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-----------------f~~L~~L 75 (844)
T 3j0a_A 16 LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-----------------FRNLPNL 75 (844)
T ss_dssp SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-----------------TSSCTTC
T ss_pred CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-----------------hcCCCCC
Confidence 445675 34788999999999988888888899999999998884 33333332 2447888
Q ss_pred cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhh--hcCCCCccEEEeeCCCCCCCCh-hhhcCCCCCcEEE
Q psy16377 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA--FVALSSLRILNISSNHLVSLPE-GLFSSCRDISEIY 270 (1344)
Q Consensus 194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~~L~~L~ 270 (1344)
++|+|++|.++.+.+. .|.++++|++|+|++|.+.+..+.. |.++++|++|+|++|.+..++. ..|.++++|++|+
T Consensus 76 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 8888888888887655 7888888888888888888754444 8888888888888888877643 5678888888888
Q ss_pred cccCcccccChhhhcCC--CCCCEEEccCCCCCCCCCCcccccCCCc------ccEEEccCCCCCccccccccCC---Cc
Q psy16377 271 AQKNSLVELSRGLFHKL--EQLLVLDLSSNHLSSNHIDETTFIGLIR------LIILNLSNNELTRIDAKTFKDL---VF 339 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l--~~L~~L~Ls~n~l~~~~i~~~~~~~l~~------L~~L~Ls~n~l~~~~~~~~~~l---~~ 339 (1344)
+++|.+..+.+..|..+ ++|+.|++++|.+.+ .....+..+.+ |+.|++++|.+....+..+... ..
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS--RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC--CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCcccc--ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 88888877766666666 788888888887765 22333444333 7777777777665544444322 45
Q ss_pred ccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCC--CceeEEEccCCcCCCCChhhhcCCCCCcEEEc
Q psy16377 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGL--YVLSKLTLSNNLLVNIDSKAFKNCSALKELDL 417 (1344)
Q Consensus 340 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 417 (1344)
++.|.+..+.+.. .+..+.+.+.....|.++ ++|+.|++++|.+.++.+..|..+++|+.|+|
T Consensus 233 l~~L~l~~~~~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (844)
T 3j0a_A 233 AFSLILAHHIMGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297 (844)
T ss_dssp BSEEECCSSCCBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred ccceecccccccc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence 5566655332211 011233444444455554 67888888888888888888888899999999
Q ss_pred cCCCCCcc-chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377 418 SSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 418 s~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
++|.+..+ |..+..+++|++|+|++|.+.++.+..|.++++|+.|++++|.++.++...|.++++|+.|++++|.++.+
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 99988865 56788889999999999999888888899999999999999999888888888899999999999988755
Q ss_pred ccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCc
Q psy16377 497 EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS 576 (1344)
Q Consensus 497 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~ 576 (1344)
.. +++|+.|++++|.++.+|.. +.+++.|++++|.++.++....+..+++
T Consensus 378 ~~-----~~~L~~L~l~~N~l~~l~~~-------------------------~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 378 HF-----IPSIPDIFLSGNKLVTLPKI-------------------------NLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp SS-----CCSCSEEEEESCCCCCCCCC-------------------------CTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred cC-----CCCcchhccCCCCccccccc-------------------------ccccceeecccCccccCchhhhhhcCCc
Confidence 32 45566666666666554321 2355666666666666665555566789
Q ss_pred ccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEE
Q psy16377 577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656 (1344)
Q Consensus 577 L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~ 656 (1344)
|+.|++++|++++..+. ..+..+++|+.|++++|.++.+....
T Consensus 428 L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~L~~L~Ls~N~l~~~~~~~---------------- 470 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGD---------------------QTPSENPSLEQLFLGENMLQLAWETE---------------- 470 (844)
T ss_dssp CCEEEEESCCCCCCCSS---------------------SSSCSCTTCCBCEEESCCCSSSCCSC----------------
T ss_pred cceeeCCCCcccccccc---------------------cccccCCccccccCCCCccccccccc----------------
Confidence 99999999988765432 12344678888888888765321100
Q ss_pred cCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccccccccc
Q psy16377 657 LGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFD 736 (1344)
Q Consensus 657 l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~ 736 (1344)
T Consensus 471 -------------------------------------------------------------------------------- 470 (844)
T 3j0a_A 471 -------------------------------------------------------------------------------- 470 (844)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccccc
Q psy16377 737 ACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816 (1344)
Q Consensus 737 ~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i 816 (1344)
+....|.++++|+.|+|++|+++.+
T Consensus 471 -------------------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 471 -------------------------------------------------------LCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp -------------------------------------------------------CCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred -------------------------------------------------------cchhhhcCcccccEEECCCCccccc
Confidence 0012355667788888888888888
Q ss_pred ccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcc
Q psy16377 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887 (1344)
Q Consensus 817 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 887 (1344)
.+..|.++++|+.|+|++|+|+.+++..|. ++|+.|+|++|+|+++++..| .+|+.|+|++|.+..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 888888888888889999988888887776 889999999999998888776 478899999988765
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-49 Score=505.14 Aligned_cols=576 Identities=21% Similarity=0.274 Sum_probs=347.4
Q ss_pred CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377 3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK 82 (1344)
Q Consensus 3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~ 82 (1344)
.|+..|.|.... +.++|..+.++.+| ..+. .+++.|++++|.+ ..+++.+|.++++|++|+|++|+
T Consensus 3 ~~~~~C~~~~~~-----~~~~c~~~~l~~iP-~~l~----~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~ 68 (606)
T 3t6q_A 3 SSDQKCIEKEVN-----KTYNCENLGLNEIP-GTLP----NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQ 68 (606)
T ss_dssp ---CCCEEEETT-----TEEECTTSCCSSCC-TTSC----TTCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCC
T ss_pred cccCceecccCC-----ceEECCCCCcccCc-CCCC----CcCcEEEccCCcc----CcCChhHhccCccceEEECCCCc
Confidence 467778875211 26899999999998 4442 4688888888888 34666788888888888888888
Q ss_pred CCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCC
Q psy16377 83 LVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162 (1344)
Q Consensus 83 i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l 162 (1344)
+..+.+.+|+++++|++|+|++|.+. ...|..|+++++|++|+|++|.++.+++..|.++++|++|++++|.+
T Consensus 69 i~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 69 IYWIHEDTFQSQHRLDTLVLTANPLI-------FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCS-------EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred cceeChhhccCccccCeeeCCCCccc-------ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 87777677777777777777655442 23455666666666666666666665544455555555555555544
Q ss_pred CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242 (1344)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 242 (1344)
. .++.. .+..+++|++|++++|.+.++.+..|+.+++|
T Consensus 142 ~-----------------------------------------~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 142 S-----------------------------------------SIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp C-----------------------------------------CCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred c-----------------------------------------ccCcc-cccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 4 43222 23335666666666666666666666666666
Q ss_pred c--EEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC---CCCCcccccCCC--c
Q psy16377 243 R--ILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS---NHIDETTFIGLI--R 315 (1344)
Q Consensus 243 ~--~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~---~~i~~~~~~~l~--~ 315 (1344)
+ .|++++|.+..+++..|.. .+|++|++++|. .+ +..+..+.++....+....+.. ..+....+.++. +
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~--~~-~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ--NL-LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS--CH-HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred ceeEEecCCCccCccChhHhhh-ccccccccCCch--hH-HHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 6 6666666666666555443 456666666654 11 2223444444433333222111 112333344333 5
Q ss_pred ccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC
Q psy16377 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN 395 (1344)
Q Consensus 316 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 395 (1344)
|+.|++++|.+..+.+..|..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.+..+..+.++++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 6667777777666666666666677777777776666554 355666666666666666666666666666666666666
Q ss_pred CcCC-CCChhhhcCCCCCcEEEccCCCCCcc---chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCC
Q psy16377 396 NLLV-NIDSKAFKNCSALKELDLSSNAIVEI---PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471 (1344)
Q Consensus 396 n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 471 (1344)
|.+. .+.+..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.++.+..|..+++|+.|++++|.+..
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 6655 33334456666666666666666544 3455566666666666666666555556666666666666665533
Q ss_pred C-CcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCC
Q psy16377 472 L-SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550 (1344)
Q Consensus 472 l-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~ 550 (1344)
. +...+..+++|++|++++|.+....+..|.. +++|+.|++++|++..... |
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~L~~n~l~~~~~---~- 467 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-----------------------LPALQHLNLQGNHFPKGNI---Q- 467 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----------------------CTTCCEEECTTCBCGGGEE---C-
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhC-----------------------CCCCCEEECCCCCCCcccc---c-
Confidence 2 2233555555555555555555544444444 4444444444444432100 0
Q ss_pred CccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEe
Q psy16377 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628 (1344)
Q Consensus 551 ~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL 628 (1344)
....+..+++|+.|++++|+++++.+..+. ++|+.|+|++|++.+..|..|.++++| .|++
T Consensus 468 ----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 468 ----------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp ----------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred ----------------cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 001123344556666666666555443333 467777777777777777788888889 9999
Q ss_pred cCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccC
Q psy16377 629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS 702 (1344)
Q Consensus 629 ~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~ 702 (1344)
++|+++++.+..+. ....+..+++++||+.|+|...|+...-. .....+.+.+.+.|..|..
T Consensus 531 ~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~c~~~~~~~w~~-------~~~~~~~~~~~~~C~~p~~ 592 (606)
T 3t6q_A 531 ASNHISIILPSLLP-----ILSQQRTINLRQNPLDCTCSNIYFLEWYK-------ENMQKLEDTEDTLCENPPL 592 (606)
T ss_dssp CSSCCCCCCGGGHH-----HHHTSSEEECTTCCEECSGGGHHHHHHHH-------HCGGGEECGGGCBEEESGG
T ss_pred cCCcccccCHhhcc-----cCCCCCEEeCCCCCccccCCcHHHHHHHH-------hCcccccCCCCCeeCCchH
Confidence 99999887766542 23467899999999999999877754321 1122345567788987654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-46 Score=477.62 Aligned_cols=555 Identities=20% Similarity=0.239 Sum_probs=448.4
Q ss_pred CCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccc
Q psy16377 97 LKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176 (1344)
Q Consensus 97 L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~ 176 (1344)
.+.++.+++ .++.+|..+. ++|++|+|++|.++.+++..|.++++|++|+|++|.++.+....|
T Consensus 13 ~~~~~c~~~--------~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~------ 76 (606)
T 3vq2_A 13 NITYQCMDQ--------KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW------ 76 (606)
T ss_dssp TTEEECTTS--------CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT------
T ss_pred CCceEccCC--------CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh------
Confidence 456777443 3455777665 799999999999999999889999999999999999988766544
Q ss_pred cccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCC
Q psy16377 177 AESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLP 256 (1344)
Q Consensus 177 ~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 256 (1344)
.++++|++|+|++|.++.+++. .|+++++|++|+|++|.+.++.+..|+++++|++|++++|.+..+.
T Consensus 77 -----------~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 77 -----------HGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp -----------TTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred -----------hchhhcCEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence 3489999999999999998665 7999999999999999999988788999999999999999998643
Q ss_pred -hhhhcCCCCCcEEEcccCcccccChhhhcCCCCCC----EEEccCCCCCCCCCCcccccCCCcccEEEccCCCCC-ccc
Q psy16377 257 -EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL----VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT-RID 330 (1344)
Q Consensus 257 -~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~----~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~ 330 (1344)
+..|.++++|++|++++|.+..+++..|+.+.+|+ .|++++|.++. +....+... +|+.|++++|.+. ...
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~n~~~~~~~ 221 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIM 221 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCHHHH
T ss_pred chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce--eCcccccCc-eeeeeeccCCccchhHH
Confidence 45679999999999999999998887776666554 89999999886 555566555 8999999999887 455
Q ss_pred cccccCCCcccEEEecCCCc------cccchhhhcCCC--CccEEEc-cCCcccccccccccCCCceeEEEccCCcCCCC
Q psy16377 331 AKTFKDLVFLQRLDLRNNSI------GYIEDNAFLSLY--NLHTIYL-SENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401 (1344)
Q Consensus 331 ~~~~~~l~~L~~L~Ls~n~l------~~i~~~~f~~l~--~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 401 (1344)
+..+.+++.|+.+++..+.+ ..+....+..+. .++.+.+ ..+.+.+..+. +..+++|+.|++++|.+..+
T Consensus 222 ~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l 300 (606)
T 3vq2_A 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL 300 (606)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC
T ss_pred HHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh
Confidence 66788899999888765433 223333343333 4566677 66777777776 88999999999999999887
Q ss_pred ChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCC--cccccC
Q psy16377 402 DSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS--SGMLYE 479 (1344)
Q Consensus 402 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~ 479 (1344)
. .+..+++|+.|++++|.+..+| .+ .+++|++|++++|...+.. .+..+++|+.|++++|.++.+. ...+..
T Consensus 301 ~--~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 301 E--DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp C--CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred h--hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 5 7888999999999999999998 45 9999999999999655433 5778999999999999997663 445789
Q ss_pred CCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh--hHhhcCCCCcEEEcCCCCCccccCCCcC--CCccEE
Q psy16377 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWL 555 (1344)
Q Consensus 480 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l~~~~~~~lp--~~L~~L 555 (1344)
+++|++|++++|.+..+. ..|..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+.......+. ++|+.|
T Consensus 375 ~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 999999999999998876 67889999999999999998765 4788999999999999999875544332 689999
Q ss_pred EcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCC
Q psy16377 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI 633 (1344)
Q Consensus 556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l 633 (1344)
++++|.++.......+..+++|+.|++++|+++++.+..+. ++|++|++++|++.+..|..|.++++|+.|++++|+|
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 99999998621122466788999999999999998776554 6899999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccC
Q psy16377 634 TKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS 702 (1344)
Q Consensus 634 ~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~ 702 (1344)
+.++.. +. .. .+.+..+++++||+.|+|.+.|+...-.. ....+.+.+.+.|..|..
T Consensus 534 ~~~p~~-~~--~l--~~~L~~l~l~~N~~~c~c~~~~~~~~l~~-------~~~~~~~~~~~~C~~p~~ 590 (606)
T 3vq2_A 534 ETSKGI-LQ--HF--PKSLAFFNLTNNSVACICEHQKFLQWVKE-------QKQFLVNVEQMTCATPVE 590 (606)
T ss_dssp CCEESC-GG--GS--CTTCCEEECCSCCCCCSSTTHHHHTTTTT-------SSSSBSSGGGCCCC----
T ss_pred cccCHh-Hh--hh--cccCcEEEccCCCcccCCccHHHHHHHHc-------CcccccCCccceeCCChH
Confidence 987764 21 11 13588999999999999999887653211 112344567788876543
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.6e-46 Score=475.64 Aligned_cols=581 Identities=20% Similarity=0.207 Sum_probs=333.8
Q ss_pred EEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCC
Q psy16377 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299 (1344)
Q Consensus 220 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~ 299 (1344)
+.+.++-+++.+ |..+- +++++|+|++|.++.+++..|.++++|++|+|++|.++.++++.|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~v-P~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSC-CSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCcc-CCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 334444445444 32221 256666666666666666556666666666666666666655555556666666666555
Q ss_pred CCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccc-hhhhcCCCCccEEEccCCcccccc
Q psy16377 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE-DNAFLSLYNLHTIYLSENRIHHIT 378 (1344)
Q Consensus 300 l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~~ 378 (1344)
+++ ++...|.++++|++|++++|.++.+.+..|+++++|+.|++++|.+..+. +..+..+++|+.|++++|++.++.
T Consensus 112 l~~--l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 112 IQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCE--ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCC--CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 554 44444555555555555555555555444555555555555555544332 223344444444444444444443
Q ss_pred cccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCc-cCcchhcCCC
Q psy16377 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK-IENGSFKNLQ 457 (1344)
Q Consensus 379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~ 457 (1344)
+..|..+.+++ ..+..++++.|.+..++........++.+++.+|.... +....+..+.
T Consensus 190 ~~~l~~L~~l~--------------------~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~ 249 (635)
T 4g8a_A 190 CTDLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 249 (635)
T ss_dssp GGGGHHHHTCT--------------------TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT
T ss_pred cccccchhhhh--------------------hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc
Confidence 33332221111 11234556666665555444444455566665554332 2233445555
Q ss_pred CCcEEEcccCCC------CCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCc
Q psy16377 458 QLTDLRLVDNNI------GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531 (1344)
Q Consensus 458 ~L~~L~L~~n~l------~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~ 531 (1344)
.++...+..+.. .......+..+..+..+.+..+..... ...+...+..+.+++
T Consensus 250 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~--------------------~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 250 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY--------------------LDGIIDLFNCLTNVS 309 (635)
T ss_dssp TCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC--------------------EEECTTTTGGGTTCS
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhhccc--------------------ccchhhhhhhhcccc
Confidence 555444432221 111111122222233332222211110 001122233344444
Q ss_pred EEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCc
Q psy16377 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS 611 (1344)
Q Consensus 532 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~ 611 (1344)
.+++.++.+..+.......+++.|++.+|.+..+.. ..+..|+.++++.|.+.......-.++|+.|++++|.+..
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccchhhhhhhcccccccCcCc----ccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 444444444333322333344455555554444332 1123455555555554443333223445555555555432
Q ss_pred c--CCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCcc
Q psy16377 612 V--KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKI 689 (1344)
Q Consensus 612 ~--~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~ 689 (1344)
. .+..+..+.+|+.+++..|.+..+.... .....+..+++.+|.....
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~------~~l~~L~~l~l~~~~~~~~------------------------ 435 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNF------LGLEQLEHLDFQHSNLKQM------------------------ 435 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCC------TTCTTCCEEECTTSEEEST------------------------
T ss_pred ccccccchhhhhhhhhhhccccccccccccc------cccccccchhhhhcccccc------------------------
Confidence 2 2333444555666666555444322110 1111222222222111000
Q ss_pred ccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCC
Q psy16377 690 MDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQIS 769 (1344)
Q Consensus 690 ~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~ 769 (1344)
. + .. .+.
T Consensus 436 ~------------------~-----~~--------------------------------------------------~~~ 442 (635)
T 4g8a_A 436 S------------------E-----FS--------------------------------------------------VFL 442 (635)
T ss_dssp T------------------S-----SC--------------------------------------------------TTT
T ss_pred c------------------c-----cc--------------------------------------------------ccc
Confidence 0 0 00 000
Q ss_pred CCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcc-cccccchhcCCCccceeecccccccccCcccccCc
Q psy16377 770 TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI-EVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848 (1344)
Q Consensus 770 ~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i-~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l 848 (1344)
-...++.+++++|.+..+.+..|.++++|+.|++++|++ ..+.+..|.++++|++|+|++|+|+.+++..|.++
T Consensus 443 -----~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 443 -----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp -----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred -----cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 012467788999999999999999999999999999974 56788999999999999999999999999999999
Q ss_pred cccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCC-CCCcEEEecCCcccCCChhhHHHHHHHhhcC
Q psy16377 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNNPFSCSCATLQELQTWIIDNS 927 (1344)
Q Consensus 849 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~-~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~ 927 (1344)
++|++|+|++|+|+++++..|..+++|++|+|++|+|+++++..+..+ ++|++|+|++|||+|||+ +.||++|++++.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~-~~~~~~wl~~~~ 596 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQR 596 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG-GHHHHHHHHHTT
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC-cHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999887 789999999999999999 799999999988
Q ss_pred CccCCCCCeeecCCCCCCCccccccCCcccccC
Q psy16377 928 NKVKDGLDISCVIDESSPPIRKEIDLNSTTCTE 960 (1344)
Q Consensus 928 ~~v~~~~~~~C~~~~~~~~~~~~~~~~~~~C~~ 960 (1344)
..+.+..+++|..|....+ ....+++ ..|..
T Consensus 597 ~~~~~~~~~~C~~P~~~~g-~~l~~~~-~~C~~ 627 (635)
T 4g8a_A 597 QLLVEVERMECATPSDKQG-MPVLSLN-ITCQM 627 (635)
T ss_dssp TTBSCGGGCBBCSSTTTTT-CBGGGCC-CCC--
T ss_pred CccCCCCCceeCCchHHCC-CEeeeec-cCCCC
Confidence 8888889999999987554 3445554 35763
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-45 Score=460.45 Aligned_cols=539 Identities=24% Similarity=0.292 Sum_probs=352.7
Q ss_pred CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCC
Q psy16377 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298 (1344)
Q Consensus 219 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n 298 (1344)
+.++.++.+++.+ |..+ .+++++|++++|.++.+++..|.++++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSC-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcccc-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 4566666666655 3333 246777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccc-hhhhcCCCCccEEEccCCccccc
Q psy16377 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE-DNAFLSLYNLHTIYLSENRIHHI 377 (1344)
Q Consensus 299 ~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~ 377 (1344)
.++. +....|.++++|++|++++|.+..+.+..|+++++|++|++++|.+..+. +..|.++++|+.|++++|.+.+.
T Consensus 87 ~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cCCc--cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 7665 44556777777777777777777666655677777777777777766532 34566667777777777776666
Q ss_pred ccccccCCCce----eEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcc
Q psy16377 378 TAHLFNGLYVL----SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENG 451 (1344)
Q Consensus 378 ~~~~~~~l~~L----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~ 451 (1344)
.+..+..+.+| ..|++++|.+..+.+..|..+ +|+.|++++|... .++..+..++.++.+.+....+..
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---- 239 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---- 239 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC----
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC----
Confidence 66556555555 566666666666666555544 5666666665332 344555555555555443221110
Q ss_pred hhcCCCCCcEEEcccCCCCCCCcccccCCC--CccEEEcCCC-cCcccccccccCCCccceEeccccCCCChhhHhhcCC
Q psy16377 452 SFKNLQQLTDLRLVDNNIGNLSSGMLYELP--SLEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLA 528 (1344)
Q Consensus 452 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~--~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~ 528 (1344)
...+ ..++...+..+. .++.++++++ .+....+..|..+++|+.|++++|.++.+|..+..+
T Consensus 240 ----~~~l----------~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~- 304 (570)
T 2z63_A 240 ----EGNL----------EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF- 304 (570)
T ss_dssp ----CSSC----------EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-
T ss_pred ----chhh----------hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-
Confidence 0111 111111122221 2334444444 333444444555555555555555555555544444
Q ss_pred CCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCc
Q psy16377 529 QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNL 608 (1344)
Q Consensus 529 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~ 608 (1344)
+|+.|++++|.+..++.. .+++|+.|++++|.+.+..+....++|+.|++++|.
T Consensus 305 ~L~~L~l~~n~~~~l~~~--------------------------~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPTL--------------------------KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp CCSEEEEESCBCSSCCBC--------------------------BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CccEEeeccCcccccCcc--------------------------cccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 555555555554433221 233445555555544433332223345555555555
Q ss_pred CCccC--CCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCcccccc
Q psy16377 609 IKSVK--PHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQY 686 (1344)
Q Consensus 609 i~~~~--~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~ 686 (1344)
+.+.. +..+.++++|+.|++++|.++++... +. .
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-----~-------------------------------------- 394 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL-----G-------------------------------------- 394 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE-----T--------------------------------------
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-cc-----c--------------------------------------
Confidence 54432 34455666777777766655543211 00 0
Q ss_pred CccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCC
Q psy16377 687 PKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQ 766 (1344)
Q Consensus 687 ~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~ 766 (1344)
T Consensus 395 -------------------------------------------------------------------------------- 394 (570)
T 2z63_A 395 -------------------------------------------------------------------------------- 394 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccEEEEeCCcccccCC-CcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccccc-ccCccc
Q psy16377 767 QISTVPPRIPMDATHVYLDGNTFKTIPN-HVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT-HFYGYE 844 (1344)
Q Consensus 767 ~l~~~p~~ip~~l~~L~L~~n~l~~l~~-~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~ 844 (1344)
...++.|++++|.+..+.. ..|.++++|+.|++++|++..+.+..|.++++|++|+|++|+++ ...+..
T Consensus 395 ---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 395 ---------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp ---------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ---------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 0135667777777776644 56888999999999999999999999999999999999999998 345678
Q ss_pred ccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHh
Q psy16377 845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWII 924 (1344)
Q Consensus 845 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~ 924 (1344)
|..+++|++|+|++|+|+.+.+..|..+++|++|+|++|+++.+++..+..+++|+.|++++|||.|+|+...++..|++
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996444449999
Q ss_pred hcCCccCCCCCeeecCCCC
Q psy16377 925 DNSNKVKDGLDISCVIDES 943 (1344)
Q Consensus 925 ~~~~~v~~~~~~~C~~~~~ 943 (1344)
.+...+.+.. +|..|+.
T Consensus 546 ~~~~~~~~~~--~C~~~~~ 562 (570)
T 2z63_A 546 KNSQKEQGSA--KCSGSGK 562 (570)
T ss_dssp HTGGGEESCC--BBTTTCC
T ss_pred hccccCCCch--hhCCCCC
Confidence 8877777666 9987643
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.8e-44 Score=447.72 Aligned_cols=108 Identities=30% Similarity=0.534 Sum_probs=82.0
Q ss_pred cceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecC
Q psy16377 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN 906 (1344)
Q Consensus 827 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~ 906 (1344)
|++|+|++|+|+.+. ..+++|++|+|++|+|+.|+.. ..+++|++|+|++|+|+.+++..+..+++|+.|++++
T Consensus 433 L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 433 LEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 444444444444432 3566777777777777777653 3468899999999999998888888899999999999
Q ss_pred CcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCC
Q psy16377 907 NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942 (1344)
Q Consensus 907 Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~ 942 (1344)
|||.|+|+.+.|+..|++++... +...++|..|+
T Consensus 507 N~~~~~~~~~~~l~~~l~~~~~~--~~~~~~C~~~~ 540 (549)
T 2z81_A 507 NPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGSG 540 (549)
T ss_dssp SCBCCCHHHHHHHHHHHHHCTTT--EESCCBBTTTC
T ss_pred CCccCCCccHHHHHHHHHhcccc--cCCCCeECCCC
Confidence 99999999778999999876543 56788998764
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-42 Score=444.88 Aligned_cols=576 Identities=22% Similarity=0.280 Sum_probs=332.3
Q ss_pred eEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCE
Q psy16377 20 ISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKR 99 (1344)
Q Consensus 20 ~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~ 99 (1344)
+.++|..+.++.+| .++ | .++++|+|++|.+ ..+++.+|.++++|++|+|++|+|+.+++++|+++++|++
T Consensus 34 ~~~~c~~~~l~~vP-~~l---p-~~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 34 ITYQCMELNFYKIP-DNL---P-FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp TEEECTTSCCSSCC-SSS---C-TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CEEECCCCCcCccC-CCC---C-cCCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence 36899999999998 555 3 5689999999998 5688889999999999999999999998888888888888
Q ss_pred EEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhcccccc
Q psy16377 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179 (1344)
Q Consensus 100 L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~ 179 (1344)
|+|++|.+. .+.+..|.++++|++|+|++|+++.+++..|+++++|++|+|++|.++.+....+
T Consensus 105 L~Ls~N~l~-------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~--------- 168 (635)
T 4g8a_A 105 LILTGNPIQ-------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------- 168 (635)
T ss_dssp EECTTCCCC-------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---------
T ss_pred EEccCCcCC-------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh---------
Confidence 888766543 2334567777777777777777777777667777777777777776665432211
Q ss_pred CCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCC----CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCC
Q psy16377 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRL----QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255 (1344)
Q Consensus 180 ~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l 255 (1344)
+.++++|++|++++|+++.++.. .+..+.++ ..++++.|.+..+.+..+.. ..++.|++.+|...
T Consensus 169 -------~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~-- 237 (635)
T 4g8a_A 169 -------FSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDS-- 237 (635)
T ss_dssp -------GGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSS--
T ss_pred -------hccchhhhhhcccCccccccccc-cccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhccccc--
Confidence 12255566666666665555433 33332222 24445555554443332222 23444444444222
Q ss_pred ChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC----CCCCcccccCCCcccEEEccCCCCCc---
Q psy16377 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS----NHIDETTFIGLIRLIILNLSNNELTR--- 328 (1344)
Q Consensus 256 ~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~----~~i~~~~~~~l~~L~~L~Ls~n~l~~--- 328 (1344)
..+....+..+..++...+..+.... .......+..+..+....+..+....
T Consensus 238 ---------------------~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 296 (635)
T 4g8a_A 238 ---------------------LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 296 (635)
T ss_dssp ---------------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred ---------------------ccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence 12223334444444444433221110 00122233334444444443332211
Q ss_pred cccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcC
Q psy16377 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408 (1344)
Q Consensus 329 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 408 (1344)
.....+..+.+++.+.+.++.+..+.. +.....|+.|++.+|.+...... .+..|+.+++..|.+.... .+..
T Consensus 297 ~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~ 369 (635)
T 4g8a_A 297 GIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVD 369 (635)
T ss_dssp ECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCB
T ss_pred chhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--cccc
Confidence 112234445566666666666655543 44455666666666665554432 2345556666665544432 2334
Q ss_pred CCCCcEEEccCCCCC---ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCCcccccCCCCcc
Q psy16377 409 CSALKELDLSSNAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLE 484 (1344)
Q Consensus 409 l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~ 484 (1344)
+++|+.|+++.|.+. ..+..+..+.+|+.|++..+.+..... .+..+++|+.+++..+.. ...+...|..+++|+
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-cccccccccchhhhhccccccccccccccccccc
Confidence 566666666666654 233444555666666666655444332 344555566666555544 222333445555555
Q ss_pred EEEcCCCcCcccccccccCCCccceEeccccCCCC--hhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcC
Q psy16377 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYI 562 (1344)
Q Consensus 485 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l 562 (1344)
.++++.|.+..+.+..+..++.|+.|++++|.+.. +|..|..
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------------------------------------ 492 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------ 492 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhh------------------------------------
Confidence 55555555555544444444444444444443211 1222223
Q ss_pred CCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccccc
Q psy16377 563 SSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTA 640 (1344)
Q Consensus 563 ~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~ 640 (1344)
+++|++|++++|+++++.+..+. ++|++|+|++|+|.++.+..|.++++|+.|||++|+|+++.+..
T Consensus 493 -----------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 493 -----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp -----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred -----------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 34555555555555555544433 46677777777777777777888888888888888888887766
Q ss_pred ccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcC
Q psy16377 641 LRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC 720 (1344)
Q Consensus 641 l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c 720 (1344)
+.. ...++..+++++|||.|||++.||...-+ .....+.+.+.+.|..|.. .++.++.++ ++.|
T Consensus 562 l~~----l~~~L~~L~L~~Np~~C~C~~~~~~~wl~-------~~~~~~~~~~~~~C~~P~~--~~g~~l~~~---~~~C 625 (635)
T 4g8a_A 562 LQH----FPSSLAFLNLTQNDFACTCEHQSFLQWIK-------DQRQLLVEVERMECATPSD--KQGMPVLSL---NITC 625 (635)
T ss_dssp TTC----CCTTCCEEECTTCCBCCSGGGHHHHHHHH-------HTTTTBSCGGGCBBCSSTT--TTTCBGGGC---CCCC
T ss_pred HHh----hhCcCCEEEeeCCCCcccCCcHHHHHHHH-------hCCCccCCCCCceeCCchH--HCCCEeeee---ccCC
Confidence 531 11468889999999999999999875321 1122355677889987754 445566665 3445
Q ss_pred CCC
Q psy16377 721 PYD 723 (1344)
Q Consensus 721 ~~~ 723 (1344)
+..
T Consensus 626 ~~~ 628 (635)
T 4g8a_A 626 QMT 628 (635)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.5e-43 Score=438.33 Aligned_cols=204 Identities=20% Similarity=0.309 Sum_probs=102.0
Q ss_pred CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccccc---ccccCCCccceEeccccCCCChh---hHhhcCCCC
Q psy16377 457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI---GTFEKNKRLAAIRLDSNFLTDIN---GVFTYLAQL 530 (1344)
Q Consensus 457 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~l~---~~~~~l~~L 530 (1344)
.+|+.|++++|.++.++...+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.++.++ ..+..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 344444444444444444333344444444444444443221 12334444444444444444443 224444455
Q ss_pred cEEEcCCCCCccccCC-CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcC
Q psy16377 531 LWLNLSENHLVWFDYA-MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLI 609 (1344)
Q Consensus 531 ~~L~Ls~n~l~~~~~~-~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i 609 (1344)
+.|++++|+++.++.. ..+++|+.|++++|.++.++... .++|+.|++++|+++++. .-.++|++|+|++|++
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~----~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI----PQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKL 463 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS----CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchh----cCCceEEECCCCChhhhc--ccCChhcEEECCCCcc
Confidence 5555555544433221 11234555555555544443311 124555555555555443 1123456666666666
Q ss_pred CccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCccccccc-Cccccc
Q psy16377 610 KSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCS-MDWLPI 673 (1344)
Q Consensus 610 ~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~-~~~l~~ 673 (1344)
+.+.. ...+++|+.|++++|+++++.+..+. ....+..+++++||+.|+|. ..|+..
T Consensus 464 ~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~~l~~ 521 (549)
T 2z81_A 464 KTLPD--ASLFPVLLVMKISRNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCPRIDYLSR 521 (549)
T ss_dssp SSCCC--GGGCTTCCEEECCSSCCCCCCTTGGG-----GCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred CcCCC--cccCccCCEEecCCCccCCcCHHHHh-----cCcccCEEEecCCCccCCCccHHHHHH
Confidence 53322 34466677777777777666554432 23456777888999999998 456543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=422.64 Aligned_cols=159 Identities=23% Similarity=0.331 Sum_probs=133.1
Q ss_pred ccEEEEeCCcccccCC--CcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCcccccCccccceee
Q psy16377 779 ATHVYLDGNTFKTIPN--HVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELY 855 (1344)
Q Consensus 779 l~~L~L~~n~l~~l~~--~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 855 (1344)
++.|++++|++++++. ..|.++++|+.|++++|+++. ++...|.++++|+.|+|++|+++...+..+. ++|+.|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 5566666666665543 347778899999999999988 7777789999999999999999765544443 7999999
Q ss_pred ccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHH-HHHHhhcCCccCCCC
Q psy16377 856 LQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQEL-QTWIIDNSNKVKDGL 934 (1344)
Q Consensus 856 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l-~~w~~~~~~~v~~~~ 934 (1344)
|++|+|+.++...+ .+++|++|+|++|+|+.++...+..+++|++|++++|||.|+|+ +.|| ..|++++... +..
T Consensus 428 Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~-~~~~~~~~~~~~~~~--~~~ 503 (520)
T 2z7x_B 428 LHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSRWLNKNSQK--EQG 503 (520)
T ss_dssp CCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH-HHHHHHHHHHHTTTT--EES
T ss_pred CCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC-chHHHHHHHHhcccc--CCC
Confidence 99999999987766 89999999999999999999888889999999999999999999 6899 9999876543 567
Q ss_pred CeeecCCCC
Q psy16377 935 DISCVIDES 943 (1344)
Q Consensus 935 ~~~C~~~~~ 943 (1344)
+++|..|+.
T Consensus 504 ~~~C~~p~~ 512 (520)
T 2z7x_B 504 SAKCSGSGK 512 (520)
T ss_dssp CCBBTTTCC
T ss_pred CCCcCCccc
Confidence 899988753
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=423.89 Aligned_cols=475 Identities=23% Similarity=0.304 Sum_probs=400.9
Q ss_pred EEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEE
Q psy16377 21 SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRL 100 (1344)
Q Consensus 21 ~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L 100 (1344)
.++|....+..+| ..+ + .+++.|++++|.+ ..+++.+|.++++|++|+|++|++..+++.+|+++++|++|
T Consensus 11 ~~~c~~~~l~~ip-~~l---~-~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 11 TYQCMELNFYKIP-DNL---P-FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp EEECCSSCCSSCC-SSS---C-SSCCEEECCSCCC----CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred EEEeCCCCccccC-CCc---c-ccccEEEccCCcc----CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence 6899999999998 433 2 5699999999998 45777899999999999999999999998999999999999
Q ss_pred EcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCC-Ccchhhhcccccc
Q psy16377 101 TINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDID-TLGFAVRRASAES 179 (1344)
Q Consensus 101 ~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~~~~~~~~ 179 (1344)
+|++|.+. ...|..|.++++|++|++++|.++.++...++++++|++|++++|.++.+. +..
T Consensus 82 ~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~---------- 144 (570)
T 2z63_A 82 ILTGNPIQ-------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---------- 144 (570)
T ss_dssp ECTTCCCC-------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG----------
T ss_pred eCcCCcCC-------ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh----------
Confidence 99877653 355688999999999999999999999877999999999999999988753 222
Q ss_pred CCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCC----CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCC--
Q psy16377 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRL----QNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-- 253 (1344)
Q Consensus 180 ~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-- 253 (1344)
++++++|++|++++|.++.++.. .++.+++| +.|++++|.+.++.+..+..+ +|+.|++++|...
T Consensus 145 -------~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~ 215 (570)
T 2z63_A 145 -------FSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN 215 (570)
T ss_dssp -------GGGCTTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT
T ss_pred -------hcccCCCCEEeCcCCccceecHH-HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccccc
Confidence 24489999999999999988765 68888888 899999999999988888776 8999999987322
Q ss_pred -----------------------------CCChhhhcCCCC--CcEEEcccC-cccccChhhhcCCCCCCEEEccCCCCC
Q psy16377 254 -----------------------------SLPEGLFSSCRD--ISEIYAQKN-SLVELSRGLFHKLEQLLVLDLSSNHLS 301 (1344)
Q Consensus 254 -----------------------------~l~~~~f~~l~~--L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 301 (1344)
.++...|..+.+ ++.+++.++ .+....+..|..+++|+.|++++|.+.
T Consensus 216 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 295 (570)
T 2z63_A 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295 (570)
T ss_dssp HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence 222233333332 345555555 555556667788999999999999887
Q ss_pred CCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc--c
Q psy16377 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--A 379 (1344)
Q Consensus 302 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~--~ 379 (1344)
. + +..+..+ +|+.|++++|.+..++. ..+++|+.|++++|.+...... ..+++|+.|++++|.+.+.. +
T Consensus 296 ~--l-~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 296 R--V-KDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp S--C-CBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE
T ss_pred h--h-hhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc
Confidence 5 3 4456667 99999999999986654 4678999999999987755442 67899999999999998775 6
Q ss_pred ccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc--hhhcCCCCccEEEccCCCCCccCcchhcCCC
Q psy16377 380 HLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP--SALSELPFLKTLDLGENQISKIENGSFKNLQ 457 (1344)
Q Consensus 380 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 457 (1344)
..+.++++|+.|++++|.+.++.+. +..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.+..+..|.+++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 6788999999999999999888665 889999999999999998664 3688999999999999999999999999999
Q ss_pred CCcEEEcccCCCC--CCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEE
Q psy16377 458 QLTDLRLVDNNIG--NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLN 534 (1344)
Q Consensus 458 ~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~ 534 (1344)
+|+.|++++|.+. .++ ..+..+++|++|++++|+++.+.+..|..+++|+.|++++|.+++++ ..+..+++|+.|+
T Consensus 446 ~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp TCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 9999999999985 355 45889999999999999999998889999999999999999999876 5688999999999
Q ss_pred cCCCCCc
Q psy16377 535 LSENHLV 541 (1344)
Q Consensus 535 Ls~n~l~ 541 (1344)
+++|.+.
T Consensus 525 l~~N~~~ 531 (570)
T 2z63_A 525 LHTNPWD 531 (570)
T ss_dssp CCSSCBC
T ss_pred ecCCccc
Confidence 9999886
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.4e-40 Score=412.12 Aligned_cols=157 Identities=25% Similarity=0.316 Sum_probs=130.6
Q ss_pred ccEEEEeCCcccccCC--CcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCcccccCc-ccccee
Q psy16377 779 ATHVYLDGNTFKTIPN--HVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL-EKLSEL 854 (1344)
Q Consensus 779 l~~L~L~~n~l~~l~~--~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l-~~L~~L 854 (1344)
++.|++++|+++.++. ..|.++++|+.|++++|+++. ++...|.++++|++|+|++|+++...+ ..+ ++|+.|
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L 455 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVL 455 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEE
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEE
Confidence 4556666666666553 347778889999999999988 777789999999999999999876433 444 699999
Q ss_pred eccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHH-HHhhcCCccC--
Q psy16377 855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT-WIIDNSNKVK-- 931 (1344)
Q Consensus 855 ~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~-w~~~~~~~v~-- 931 (1344)
+|++|+|+.|++..+ .+++|++|+|++|+|+.+++..+..+++|+.|++++|||.|+|+ +.||.. |++.....+.
T Consensus 456 ~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~-~~~~~~~~~~~~~~~~~~~ 533 (562)
T 3a79_B 456 DLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEWINKHSGVVRNS 533 (562)
T ss_dssp ECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH-HHHHHHHHHHHTTTTEECS
T ss_pred ECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc-hHHHHHHHHHhcCCccccc
Confidence 999999999988887 89999999999999999999888899999999999999999999 688865 9887766654
Q ss_pred ----CCCCeeecC
Q psy16377 932 ----DGLDISCVI 940 (1344)
Q Consensus 932 ----~~~~~~C~~ 940 (1344)
...+++|..
T Consensus 534 ~~~~~~~~~~C~~ 546 (562)
T 3a79_B 534 AGSVAPDSAKCSG 546 (562)
T ss_dssp SSSBCSSSSCBSS
T ss_pred ccCCCCCCCccCC
Confidence 346788876
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=411.43 Aligned_cols=459 Identities=18% Similarity=0.207 Sum_probs=363.9
Q ss_pred CEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcC
Q psy16377 153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA 232 (1344)
Q Consensus 153 ~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~ 232 (1344)
++|++++|.++.++.. + .++|++|+|++|.++.+++. .|.++++|++|+|++|.++++.
T Consensus 3 ~~l~ls~n~l~~ip~~------------------~--~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~ 61 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD------------------L--SQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLD 61 (520)
T ss_dssp CEEECTTSCCSSCCCS------------------C--CTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEE
T ss_pred ceEecCCCCccccccc------------------c--cccccEEECCCCcccccChh-hccccccccEEecCCCccCCcC
Confidence 4678888888776642 1 36899999999999988765 7889999999999999999988
Q ss_pred hhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccC-hhhhcCCCCCCEEEccCCCCCCCCCCccccc
Q psy16377 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELS-RGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311 (1344)
Q Consensus 233 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~ 311 (1344)
|.+|+++++|++|+|++|.++.+|.. .+++|++|++++|.+..++ +..|+++++|++|++++|.+.+ ..+.
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~ 133 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVL 133 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGG
T ss_pred hHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhcc
Confidence 88999999999999999999988875 7899999999999998753 3567899999999999998764 4566
Q ss_pred CCCcc--cEEEccCCCC--CccccccccCCC-cccEEEecCCCcc-ccchhhhcCCCCccEEEccCCc-------ccccc
Q psy16377 312 GLIRL--IILNLSNNEL--TRIDAKTFKDLV-FLQRLDLRNNSIG-YIEDNAFLSLYNLHTIYLSENR-------IHHIT 378 (1344)
Q Consensus 312 ~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~-------l~~~~ 378 (1344)
.+++| +.|++++|.+ .+..+..+..+. ....+++++|.+. .++...+..+++|+.|++++|. +.+..
T Consensus 134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 77777 9999999988 666666666655 3445677777754 4555667788999999999886 55555
Q ss_pred cccccCCCceeEEEccCCcCCCCChhhhc---CCCCCcEEEccCCCCC-ccchhh-----cCCCCccEEEccCCCCCccC
Q psy16377 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFK---NCSALKELDLSSNAIV-EIPSAL-----SELPFLKTLDLGENQISKIE 449 (1344)
Q Consensus 379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~-~lp~~l-----~~l~~L~~L~Ls~n~i~~~~ 449 (1344)
+ .+..+++|+.|++++|.+.+.....+. .+++|+.|++++|.+. .+|..+ ..++.|+.+++++|.+ .++
T Consensus 214 ~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p 291 (520)
T 2z7x_B 214 A-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFP 291 (520)
T ss_dssp H-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSC
T ss_pred h-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecc
Confidence 4 578889999999988877653222111 2468999999999888 788887 8899999999999988 554
Q ss_pred cchhcCC---CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCCh---hhH
Q psy16377 450 NGSFKNL---QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI---NGV 523 (1344)
Q Consensus 450 ~~~~~~l---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~ 523 (1344)
...+..+ .+|+.|++++|.+..++. +..+++|++|++++|++++..+..+..+++|+.|++++|.++++ |..
T Consensus 292 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp THHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred hhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 3444444 679999999998866542 36788999999999999887777888899999999999998864 456
Q ss_pred hhcCCCCcEEEcCCCCCcc-ccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEE
Q psy16377 524 FTYLAQLLWLNLSENHLVW-FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVL 602 (1344)
Q Consensus 524 ~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L 602 (1344)
+..+++|+.|++++|++.. ++.. .+..+++|+.|++++|++++..+..++.+|+.|
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L 426 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKG-----------------------DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGC-----------------------SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEE
T ss_pred HhhCCCCCEEECCCCcCCcccccc-----------------------hhccCccCCEEECcCCCCCcchhhhhcccCCEE
Confidence 8888888888888888764 3221 123356788999999998877777777889999
Q ss_pred EcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccc-cc
Q psy16377 603 FINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL-PI 673 (1344)
Q Consensus 603 ~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l-~~ 673 (1344)
++++|+|.. +|..+..+++|+.|++++|+|+.++...+ .....+..+++++||+.|+|.+.|+ ..
T Consensus 427 ~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~c~c~~~~~~~~ 492 (520)
T 2z7x_B 427 DLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDYLSR 492 (520)
T ss_dssp ECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred ECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHh-----ccCCcccEEECcCCCCcccCCchHHHHH
Confidence 999999984 45556699999999999999998776533 3456799999999999999999998 54
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-37 Score=389.98 Aligned_cols=461 Identities=20% Similarity=0.179 Sum_probs=263.1
Q ss_pred CCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCC
Q psy16377 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL 206 (1344)
Q Consensus 127 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l 206 (1344)
..+++++++|+++.+|... .++|++|+|++|.++.++...| .++++|++|+|++|+++.+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~-----------------~~l~~L~~L~Ls~N~l~~~ 91 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDI-----------------SFLSELRVLRLSHNRIRSL 91 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGGT-----------------TTCTTCCEEECCSCCCCEE
T ss_pred CCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhhh-----------------ccCCCccEEECCCCCCCcC
Confidence 3356666666666666542 1556666666665555443322 2245555555555555555
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCC-hhhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377 207 GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLP-EGLFSSCRDISEIYAQKNSLVELSRGLFH 285 (1344)
Q Consensus 207 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~l~~~~~~ 285 (1344)
++. .|.++++|++|+|++|.++.+. .. .+++|++|++++|.+..++ +..|.++++|++|++++|.+.... |.
T Consensus 92 ~~~-~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~ 164 (562)
T 3a79_B 92 DFH-VFLFNQDLEYLDVSHNRLQNIS-CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LL 164 (562)
T ss_dssp CTT-TTTTCTTCCEEECTTSCCCEEC-SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TG
T ss_pred CHH-HhCCCCCCCEEECCCCcCCccC-cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hh
Confidence 443 4555555555555555555442 22 4555555555555555544 234455555555555555544322 22
Q ss_pred CCCCC--CEEEccCCCC--CCCCCCcccccCCC-cccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC
Q psy16377 286 KLEQL--LVLDLSSNHL--SSNHIDETTFIGLI-RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360 (1344)
Q Consensus 286 ~l~~L--~~L~Ls~n~l--~~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~ 360 (1344)
.+++| +.|++++|.+ ++ .....+..+. ..-.+++++|.+... +....+..
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~--~~~~~l~~l~~~~l~l~l~~n~~~~~-----------------------~~~~~~~~ 219 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKG--GETESLQIPNTTVLHLVFHPNSLFSV-----------------------QVNMSVNA 219 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCS--SSCCEEEECCEEEEEEEECSSSCCCC-----------------------CCEEEESS
T ss_pred hhhhceeeEEEeecccccccc--cCcccccccCcceEEEEecCccchhh-----------------------hhhhcccc
Confidence 23333 5555555544 22 2222333222 111234444443331 22222333
Q ss_pred CCCccEEEccCCcc-----cccccccccCCCceeEEEccCCcCCCCChh---hhcCCCCCcEEEccCCCCC-ccchhh--
Q psy16377 361 LYNLHTIYLSENRI-----HHITAHLFNGLYVLSKLTLSNNLLVNIDSK---AFKNCSALKELDLSSNAIV-EIPSAL-- 429 (1344)
Q Consensus 361 l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~-~lp~~l-- 429 (1344)
+++|+.+++++|.. .+. ...+.+++.|+.|++.++.+.+.... .....++|++|++++|.+. .+|..+
T Consensus 220 l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 220 LGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred cceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 44444444444421 111 11233444444444444433221100 0111235666666666655 555554
Q ss_pred ---cCCCCccEEEccCCCCCccCcchhcC---CCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccC
Q psy16377 430 ---SELPFLKTLDLGENQISKIENGSFKN---LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEK 503 (1344)
Q Consensus 430 ---~~l~~L~~L~Ls~n~i~~~~~~~~~~---l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 503 (1344)
..++.|+.+++..+.+ .++...+.. ..+|+.|++++|.+..+.. ...+++|++|++++|++++..+..+..
T Consensus 299 ~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCST 375 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred cccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcc
Confidence 4555555555555555 332222222 2457777777777654431 256777888888888777766677777
Q ss_pred CCccceEeccccCCCChh---hHhhcCCCCcEEEcCCCCCcc-ccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccE
Q psy16377 504 NKRLAAIRLDSNFLTDIN---GVFTYLAQLLWLNLSENHLVW-FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKN 579 (1344)
Q Consensus 504 l~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~ 579 (1344)
+++|+.|++++|.++.++ ..+..+++|+.|++++|++.. ++.. .+..+++|+.
T Consensus 376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----------------------~~~~l~~L~~ 432 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----------------------TCAWAESILV 432 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----------------------CCCCCTTCCE
T ss_pred cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----------------------hhcCcccCCE
Confidence 778888888888777543 456777788888877777753 2211 1234567888
Q ss_pred EECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCC
Q psy16377 580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGG 659 (1344)
Q Consensus 580 L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~ 659 (1344)
|++++|++++..+..++.+|+.|++++|+|..+.+.. .++++|+.|++++|+|+.++...+ .....+..+++++
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~ 506 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVF-----DRLTSLQYIWLHD 506 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTT-TSSCCCSEEECCSSCCCCCCTTST-----TTCTTCCCEECCS
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhh-cCCCCCCEEECCCCCCCCCCHHHH-----hcCCCCCEEEecC
Confidence 9999998887777777778999999999998655444 499999999999999998876533 3456788999999
Q ss_pred CcccccccCcccc
Q psy16377 660 NPFDCDCSMDWLP 672 (1344)
Q Consensus 660 Np~~C~c~~~~l~ 672 (1344)
||+.|+|.+.|+.
T Consensus 507 N~~~c~c~~~~~~ 519 (562)
T 3a79_B 507 NPWDCTCPGIRYL 519 (562)
T ss_dssp CCBCCCHHHHHHH
T ss_pred CCcCCCcchHHHH
Confidence 9999999998883
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-37 Score=394.41 Aligned_cols=440 Identities=18% Similarity=0.279 Sum_probs=236.4
Q ss_pred CCCCCCcccccCCCCce---eEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEee
Q psy16377 3 EVPENCSWKMENESMNR---ISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKIS 79 (1344)
Q Consensus 3 ~~~~~c~~~~~~~~~~~---~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls 79 (1344)
.+|..|.|....+.+.| ..|.|..+ .+++.|+|+++.+ .+.++ .+|+++++|++|+|+
T Consensus 53 ~~~~~~~W~~~~~~c~w~~~~GV~C~~~---------------~~V~~L~L~~~~l---~g~lp-~~l~~L~~L~~L~Ls 113 (636)
T 4eco_A 53 GTQPGANWNFNKELDMWGAQPGVSLNSN---------------GRVTGLSLEGFGA---SGRVP-DAIGQLTELEVLALG 113 (636)
T ss_dssp -----CCCCCSSCGGGTTCCTTEEECTT---------------CCEEEEECTTSCC---EEEEC-GGGGGCTTCCEEESC
T ss_pred CCccCCCCCCCCCcccccCCCCeEEcCC---------------CCEEEEEecCccc---CCcCC-hHHhcCccceEEECc
Confidence 46777889766666778 78999531 3589999999998 36777 689999999999999
Q ss_pred CCcCC-------------ccChhhhcCCCCCCEEEcccccCccc------------------------------------
Q psy16377 80 NCKLV-------------ELPVDVFSGLRNLKRLTINTRNLQWD------------------------------------ 110 (1344)
Q Consensus 80 ~~~i~-------------~l~~~~f~~l~~L~~L~Ls~n~~~~~------------------------------------ 110 (1344)
+|.+. .+|... +.+|+ ++++.+.+...
T Consensus 114 ~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~ 189 (636)
T 4eco_A 114 SHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189 (636)
T ss_dssp CGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTT
T ss_pred CCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhc
Confidence 99652 222111 11222 22222111100
Q ss_pred -CCcccccCCCcCCCCCCCCEEEccCCCCCc------------------cChhhhc--CCCCCCEEECCCCCCCCCCCcc
Q psy16377 111 -KSKKLDLVPGSLDGLRELQVLNISSSNIKS------------------ISDDVFC--SLANIQTLNLSRNSIRDIDTLG 169 (1344)
Q Consensus 111 -~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~------------------i~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~ 169 (1344)
.+..+..+|..|+++++|++|+|++|.++. +|.. ++ ++++|++|+|++|.+...-+..
T Consensus 190 ~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTF 268 (636)
T ss_dssp CCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTT
T ss_pred cccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHH
Confidence 011222255556666666666666666655 4432 44 5666666666666544321111
Q ss_pred hhhhccccccCCCCccccCCCCcccEEECCCCC-CCC--CCCCccCCCC------CCCCEEEccCCCCCCcChh--hhcC
Q psy16377 170 FAVRRASAESNSGEKIECSGGMDLRILDLSHNK-LRT--LGDYSGITKF------RRLQNLHLENNEISQIAPN--AFVA 238 (1344)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~-l~~--l~~~~~l~~l------~~L~~L~Ls~n~i~~~~~~--~~~~ 238 (1344)
+.++++|++|++++|+ +++ +|. .+..+ ++|++|++++|.++. .|. .+++
T Consensus 269 -----------------l~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~ 328 (636)
T 4eco_A 269 -----------------LKALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQK 328 (636)
T ss_dssp -----------------TTTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTT
T ss_pred -----------------HhcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCCCcCCc-cCchhhhcc
Confidence 2235566666666665 553 333 23333 566666666666653 344 5666
Q ss_pred CCCccEEEeeCCCCC-CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCC-CCEEEccCCCCCCCCCCcccccCC--C
Q psy16377 239 LSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQ-LLVLDLSSNHLSSNHIDETTFIGL--I 314 (1344)
Q Consensus 239 l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~n~l~~~~i~~~~~~~l--~ 314 (1344)
+++|++|++++|.+. .+| .|..+++|++|++++|.+..+|.. |..+++ |+.|++++|.++. ++ ..+..+ +
T Consensus 329 l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~--lp-~~~~~~~l~ 402 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKY--IP-NIFDAKSVS 402 (636)
T ss_dssp CTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSS--CC-SCCCTTCSS
T ss_pred CCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcc--cc-hhhhhcccC
Confidence 666666666666655 455 445555666666666665555544 355555 6666666665553 22 233332 2
Q ss_pred cccEEEccCCCCCcccccccc-------CCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCC-
Q psy16377 315 RLIILNLSNNELTRIDAKTFK-------DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY- 386 (1344)
Q Consensus 315 ~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 386 (1344)
+|+.|++++|.+.+..+..|. .+.+|+.|++++|.+..++...|..+++|+.|++++|.+..++...+....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 566666666666555555454 445566666666666655555555556666666666665544443333222
Q ss_pred ------ceeEEEccCCcCCCCChhhhc--CCCCCcEEEccCCCCCccchhhcCCCCccEEEc------cCCCCCccCcch
Q psy16377 387 ------VLSKLTLSNNLLVNIDSKAFK--NCSALKELDLSSNAIVEIPSALSELPFLKTLDL------GENQISKIENGS 452 (1344)
Q Consensus 387 ------~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L------s~n~i~~~~~~~ 452 (1344)
+|+.|++++|.+..++ ..+. .+++|+.|+|++|.+..+|..+..+++|++|++ ++|.+.+..+..
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred cccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 5555555555555433 2232 555555555555555555555555555555555 234444444445
Q ss_pred hcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 453 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
+..+++|+.|++++|.++.+|...+ ++|+.|++++|++..+
T Consensus 562 l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISI 602 (636)
T ss_dssp GGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEE
T ss_pred HhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccc
Confidence 5555555555555555555544321 4555555555544433
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-36 Score=371.51 Aligned_cols=165 Identities=28% Similarity=0.423 Sum_probs=153.1
Q ss_pred CCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeec
Q psy16377 777 MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856 (1344)
Q Consensus 777 ~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 856 (1344)
..++.|++++|.+..+.+..|.++++|+.|++++|+++.+.+..|.++++|++|+|++|+++.+.+..|.++++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCe
Q psy16377 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI 936 (1344)
Q Consensus 857 ~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~ 936 (1344)
++|+|+.+.+..|..+++|++|+|++|+|+.+++..+..+++|++|++++|||.|+|+.+.|+..|++.+... .....
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~--~~~~~ 432 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQGSA 432 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTT--EESCC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccc--eeeee
Confidence 9999999999999999999999999999999999999999999999999999999999789999999876543 34567
Q ss_pred eecCCCC
Q psy16377 937 SCVIDES 943 (1344)
Q Consensus 937 ~C~~~~~ 943 (1344)
.|..++.
T Consensus 433 ~c~~~~~ 439 (455)
T 3v47_A 433 KCSGSGK 439 (455)
T ss_dssp BBTTTCC
T ss_pred eecCCCc
Confidence 8877543
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.3e-37 Score=395.25 Aligned_cols=438 Identities=16% Similarity=0.220 Sum_probs=260.2
Q ss_pred CcceEEEeeeCcccccccCCCcccccCCCCCCEEEe-eCCcCCcc-Chhhh-----------------------------
Q psy16377 43 DLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKI-SNCKLVEL-PVDVF----------------------------- 91 (1344)
Q Consensus 43 ~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~L-s~~~i~~l-~~~~f----------------------------- 91 (1344)
.+++.|+|+++.+ .+.++ .+|+++++|++|+| ++|.+... +....
T Consensus 323 ~~V~~L~Ls~~~L---~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGFGA---KGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTTCC---EEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccCCC---CCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 3589999999998 36677 68999999999999 77755322 10000
Q ss_pred ---------------------cCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCc----------
Q psy16377 92 ---------------------SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKS---------- 140 (1344)
Q Consensus 92 ---------------------~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~---------- 140 (1344)
.....++.+.+.. .+..+..+|..|+++++|++|+|++|.++.
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~------~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN------LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTC------CSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceecc------ccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 0001111111110 111222256667777777777777777766
Q ss_pred --------cChhh-hcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC-CCC--CCC
Q psy16377 141 --------ISDDV-FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK-LRT--LGD 208 (1344)
Q Consensus 141 --------i~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~-l~~--l~~ 208 (1344)
+|... |.++++|++|+|++|.+...-+.. +.++++|+.|+|++|+ +++ +|.
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-----------------l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-----------------LYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-----------------GGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-----------------HhCCCCCCEEECcCCCCcccccchH
Confidence 55432 226777777777776644322221 2236677777777776 554 332
Q ss_pred C-----ccCCCCCCCCEEEccCCCCCCcChh--hhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccCh
Q psy16377 209 Y-----SGITKFRRLQNLHLENNEISQIAPN--AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSR 281 (1344)
Q Consensus 209 ~-----~~l~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~ 281 (1344)
. ..+..+++|+.|+|++|.+.. +|. .|+++++|++|+|++|.+..+| .|..+++|+.|+|++|.+..+|.
T Consensus 536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~ 612 (876)
T 4ecn_A 536 DWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPE 612 (876)
T ss_dssp HHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCT
T ss_pred HHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchH
Confidence 1 012334467777777777763 355 6677777777777777766666 45667777777777777666554
Q ss_pred hhhcCCCC-CCEEEccCCCCCCCCCCcccccCCC--cccEEEccCCCCCccccccc---c--CCCcccEEEecCCCcccc
Q psy16377 282 GLFHKLEQ-LLVLDLSSNHLSSNHIDETTFIGLI--RLIILNLSNNELTRIDAKTF---K--DLVFLQRLDLRNNSIGYI 353 (1344)
Q Consensus 282 ~~~~~l~~-L~~L~Ls~n~l~~~~i~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~Ls~n~l~~i 353 (1344)
. +.++++ |+.|+|++|.++. + +..+..+. +|+.|++++|.+.+..+... . .+++|+.|+|++|.+..+
T Consensus 613 ~-l~~l~~~L~~L~Ls~N~L~~--l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l 688 (876)
T 4ecn_A 613 D-FCAFTDQVEGLGFSHNKLKY--I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688 (876)
T ss_dssp T-SCEECTTCCEEECCSSCCCS--C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred H-HhhccccCCEEECcCCCCCc--C-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence 4 356666 7777777776663 3 23344333 37777777776665433211 1 234677777777777766
Q ss_pred chhhhcCCCCccEEEccCCcccccccccccCC-------CceeEEEccCCcCCCCChhhhc--CCCCCcEEEccCCCCCc
Q psy16377 354 EDNAFLSLYNLHTIYLSENRIHHITAHLFNGL-------YVLSKLTLSNNLLVNIDSKAFK--NCSALKELDLSSNAIVE 424 (1344)
Q Consensus 354 ~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~ 424 (1344)
+...+..+++|+.|+|++|.+..++...+... ++|+.|+|++|.+..++ ..+. .+++|+.|+|++|.+..
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSCCSS
T ss_pred CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCCCCc
Confidence 66666666777777777777665554444332 26677777777666543 3343 66677777777777666
Q ss_pred cchhhcCCCCccEEEccC------CCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccccc
Q psy16377 425 IPSALSELPFLKTLDLGE------NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498 (1344)
Q Consensus 425 lp~~l~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~ 498 (1344)
+|..+..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.++.+|...+ ++|+.|+|++|++..+..
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccCh
Confidence 666666667777776654 55555556666666666666666666666665422 466666666666666555
Q ss_pred ccccCCCccceEeccccCCC
Q psy16377 499 GTFEKNKRLAAIRLDSNFLT 518 (1344)
Q Consensus 499 ~~~~~l~~L~~L~L~~n~l~ 518 (1344)
..|.....+..+.|.+|.+.
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTS
T ss_pred HHccccccchheeecCCCcc
Confidence 54444334444444444433
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-37 Score=395.84 Aligned_cols=445 Identities=18% Similarity=0.261 Sum_probs=281.5
Q ss_pred CCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccc------cCCCcCCCCCCCCEEEccCCCCCccChh
Q psy16377 71 YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLD------LVPGSLDGLRELQVLNISSSNIKSISDD 144 (1344)
Q Consensus 71 ~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~------~~p~~~~~l~~L~~L~Ls~n~i~~i~~~ 144 (1344)
.+++.|+|+++.+....+.+|++|++|++|+|++|++.. +..... .+|... +..|+ ++++++.+...++.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~-~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV-NERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGG-TCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCcccc-CCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 478899999999974333689999999999998886532 111111 122222 34555 66666655544333
Q ss_pred hhcC-CCCCCEEECC--------------------CCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCC
Q psy16377 145 VFCS-LANIQTLNLS--------------------RNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203 (1344)
Q Consensus 145 ~~~~-l~~L~~L~Ls--------------------~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l 203 (1344)
.+.. +..+..+++. +|.+++++.. ++++++|++|+|++|.+
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~------------------l~~l~~L~~L~Ls~n~l 218 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA------------------VMRLTKLRQFYMGNSPF 218 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG------------------GGGCTTCCEEEEESCCC
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH------------------HhcccCCCEEECcCCcc
Confidence 2221 1111111111 2333333221 34588999999999999
Q ss_pred CC------------------CCCCccCC--CCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC-CCC--CChhhh
Q psy16377 204 RT------------------LGDYSGIT--KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH-LVS--LPEGLF 260 (1344)
Q Consensus 204 ~~------------------l~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~--l~~~~f 260 (1344)
++ +|. .++ ++++|++|+|++|.+.+..|..|+++++|++|++++|. ++. +|..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~- 295 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW- 295 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-
T ss_pred ccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-
Confidence 98 776 477 89999999999999988888899999999999999997 775 55543
Q ss_pred cC------CCCCcEEEcccCcccccCh-hhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCcccccc
Q psy16377 261 SS------CRDISEIYAQKNSLVELSR-GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT 333 (1344)
Q Consensus 261 ~~------l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 333 (1344)
.. +++|++|++++|.++.+|. ..|.++++|+.|++++|.+.+. ++ .+..+++|+.|++++|.+..+ +..
T Consensus 296 ~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip--~~~~l~~L~~L~L~~N~l~~l-p~~ 371 (636)
T 4eco_A 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP--AFGSEIKLASLNLAYNQITEI-PAN 371 (636)
T ss_dssp HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC--CCEEEEEESEEECCSSEEEEC-CTT
T ss_pred HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh--hhCCCCCCCEEECCCCccccc-cHh
Confidence 33 3788888888888887775 3567888888888888887742 32 677777888888888877744 344
Q ss_pred ccCCCc-ccEEEecCCCccccchhhhcCC--CCccEEEccCCccccccccccc-------CCCceeEEEccCCcCCCCCh
Q psy16377 334 FKDLVF-LQRLDLRNNSIGYIEDNAFLSL--YNLHTIYLSENRIHHITAHLFN-------GLYVLSKLTLSNNLLVNIDS 403 (1344)
Q Consensus 334 ~~~l~~-L~~L~Ls~n~l~~i~~~~f~~l--~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~ 403 (1344)
+..+++ |+.|++++|.+..++. .+..+ ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+..+.+
T Consensus 372 l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp SEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 677777 7888888777776654 34433 3677777777777776666555 55667777777777766666
Q ss_pred hhhcCCCCCcEEEccCCCCCccchhhcC--------CCCccEEEccCCCCCccCcchh-cCCCCCcEEEcccCCCCCCCc
Q psy16377 404 KAFKNCSALKELDLSSNAIVEIPSALSE--------LPFLKTLDLGENQISKIENGSF-KNLQQLTDLRLVDNNIGNLSS 474 (1344)
Q Consensus 404 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~ 474 (1344)
..+..+++|+.|+|++|.+..+|..+.. +++|++|++++|.++.++...+ ..+++|+.|++++|.++.+|.
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~ 530 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence 6666666777777777766666543322 1256666666666664433222 255666666666666655544
Q ss_pred ccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-ChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCcc
Q psy16377 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK 553 (1344)
Q Consensus 475 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~ 553 (1344)
. +..+++|+.|++++|+ ++++|.+. .+|..+..+++|+.|+|++|++..++.. +.++|+
T Consensus 531 ~-~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~L~ 590 (636)
T 4eco_A 531 Q-PLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-ITPNIS 590 (636)
T ss_dssp G-GGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCTTCC
T ss_pred h-hhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-HhCcCC
Confidence 3 4455666666664322 11233332 3455555566666666666666555433 335666
Q ss_pred EEEcCCCcCCCC
Q psy16377 554 WLDIHGNYISSL 565 (1344)
Q Consensus 554 ~L~Ls~n~l~~l 565 (1344)
.|+|++|.+..+
T Consensus 591 ~L~Ls~N~l~~~ 602 (636)
T 4eco_A 591 VLDIKDNPNISI 602 (636)
T ss_dssp EEECCSCTTCEE
T ss_pred EEECcCCCCccc
Confidence 666666655543
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-36 Score=389.36 Aligned_cols=450 Identities=18% Similarity=0.184 Sum_probs=334.8
Q ss_pred cccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEc-cCCCCCCcChhh----------------------------
Q psy16377 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNA---------------------------- 235 (1344)
Q Consensus 185 ~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~L-s~n~i~~~~~~~---------------------------- 235 (1344)
+.|..-.+++.|+|+++.+.+..+. .++++++|+.|+| ++|.+.+..+..
T Consensus 317 V~C~~~~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 317 VDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp EEECTTSCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred eEecCCCCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 4454457899999999999864444 7999999999999 777654431111
Q ss_pred ------------h-----------cCCCCccEEEee--CCCCCCCChhhhcCCCCCcEEEcccCcccc------------
Q psy16377 236 ------------F-----------VALSSLRILNIS--SNHLVSLPEGLFSSCRDISEIYAQKNSLVE------------ 278 (1344)
Q Consensus 236 ------------~-----------~~l~~L~~L~Ls--~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~------------ 278 (1344)
+ .....++.+.+. +|.++++|.. |.++++|+.|+|++|.+..
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCccccccccccc
Confidence 0 011122333332 2566667764 6889999999999999998
Q ss_pred ------cChhh-hcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCC-CCc-cccccccC-------CCcccE
Q psy16377 279 ------LSRGL-FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE-LTR-IDAKTFKD-------LVFLQR 342 (1344)
Q Consensus 279 ------l~~~~-~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~-------l~~L~~ 342 (1344)
+|..+ |.++++|+.|+|++|.+.+ ..+..|.++++|+.|+|++|. +++ ..|..+.. +++|+.
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 77665 4499999999999999877 346789999999999999998 887 44554444 459999
Q ss_pred EEecCCCccccch-hhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCC-CcEEEccCC
Q psy16377 343 LDLRNNSIGYIED-NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA-LKELDLSSN 420 (1344)
Q Consensus 343 L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n 420 (1344)
|+|++|.+..++. ..|..+++|+.|+|++|.+..++ .|..+++|+.|+|++|.+..+ |..+..+++ |+.|+|++|
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECCSS
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECcCC
Confidence 9999999997776 47899999999999999999544 789999999999999999954 566888888 999999999
Q ss_pred CCCccchhhcCCCC--ccEEEccCCCCCccCcch---hc--CCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377 421 AIVEIPSALSELPF--LKTLDLGENQISKIENGS---FK--NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493 (1344)
Q Consensus 421 ~l~~lp~~l~~l~~--L~~L~Ls~n~i~~~~~~~---~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i 493 (1344)
.+..+|..+..++. |+.|++++|.+.+..+.. +. .+++|+.|++++|.++.++...+..+++|+.|+|++|++
T Consensus 630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 99999988877654 999999999998765422 22 345899999999999999998888999999999999999
Q ss_pred cccccccccCC-------CccceEeccccCCCChhhHhh--cCCCCcEEEcCCCCCccccCCC-cCCCccEEEcCCCcCC
Q psy16377 494 HQIEIGTFEKN-------KRLAAIRLDSNFLTDINGVFT--YLAQLLWLNLSENHLVWFDYAM-VPGNLKWLDIHGNYIS 563 (1344)
Q Consensus 494 ~~~~~~~~~~l-------~~L~~L~L~~n~l~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~-lp~~L~~L~Ls~n~l~ 563 (1344)
..++...+... ++|+.|+|++|.++.+|..+. .+++|+.|+|++|++..++... -.++|+.|+|++|.
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~-- 787 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR-- 787 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB--
T ss_pred CccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC--
Confidence 98877665543 389999999999999998886 8999999999999887532110 01234444444322
Q ss_pred CCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccc
Q psy16377 564 SLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641 (1344)
Q Consensus 564 ~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l 641 (1344)
++++|++.+..+..+. .+|+.|+|++|++ +.+|..+. ++|+.|||++|++..++...+
T Consensus 788 -----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 788 -----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp -----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred -----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 1123556555554443 4677888888877 44455444 588888888888887776554
Q ss_pred cccCCCCCCCCCeEEcCCCcccc--cccC
Q psy16377 642 RLKPVPQNKTLPEFYLGGNPFDC--DCSM 668 (1344)
Q Consensus 642 ~~~~~~~~~~l~~l~l~~Np~~C--~c~~ 668 (1344)
.... ....+.+.+|+..+ +|+.
T Consensus 848 ~~~~-----~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 848 CPYI-----EAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp HHHH-----HTTCCEEECCTTSEEESCGG
T ss_pred cccc-----cchheeecCCCccccCCCCC
Confidence 2111 12234555565544 6653
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-34 Score=351.51 Aligned_cols=393 Identities=23% Similarity=0.331 Sum_probs=282.9
Q ss_pred CCCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeC
Q psy16377 1 MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN 80 (1344)
Q Consensus 1 ~~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~ 80 (1344)
+..|+.+|.|.+ +.+.|..+.+..+| . + + .++++|+|++|.+ ..+++..|+++++|++|+|++
T Consensus 1 a~p~~~~c~~~~-------~~~~c~~~~l~~lp-~-l---~-~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~ 63 (455)
T 3v47_A 1 ADPGTSECSVIG-------YNAICINRGLHQVP-E-L---P-AHVNYVDLSLNSI----AELNETSFSRLQDLQFLKVEQ 63 (455)
T ss_dssp ------CCEEET-------TEEECCSSCCSSCC-C-C---C-TTCCEEECCSSCC----CEECTTTTSSCTTCCEEECCC
T ss_pred CCCccceeEEEc-------cccCcCCCCcccCC-C-C---C-CccCEEEecCCcc----CcCChhHhccCccccEEECcC
Confidence 357899999852 25889999999988 2 2 3 6799999999988 346667899999999999999
Q ss_pred CcCC-ccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccC--hhhhcCCCCCCEEEC
Q psy16377 81 CKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSIS--DDVFCSLANIQTLNL 157 (1344)
Q Consensus 81 ~~i~-~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L 157 (1344)
|.+. .+++..|+++++|++|+|++|.+. ...|..|.++++|++|+|++|.++... ...|..+++|++|+|
T Consensus 64 n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 64 QTPGLVIRNNTFRGLSSLIILKLDYNQFL-------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp CSTTCEECTTTTTTCTTCCEEECTTCTTC-------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred CcccceECcccccccccCCEEeCCCCccC-------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence 9886 677778888888888888766543 345777888888888888888887632 234777788888888
Q ss_pred CCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCC--CCCCEEEccCCCCCCcChhh
Q psy16377 158 SRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF--RRLQNLHLENNEISQIAPNA 235 (1344)
Q Consensus 158 s~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l--~~L~~L~Ls~n~i~~~~~~~ 235 (1344)
++|.+..+....+ +.++++|++|++++|.++.+.+. .+..+ .+|+.|++++|.+.+..+..
T Consensus 137 ~~n~l~~~~~~~~----------------~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 137 RDNNIKKIQPASF----------------FLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp CSSBCCSCCCCGG----------------GGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred CCCccCccCcccc----------------cCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhh
Confidence 8877776644332 12367777777777777666554 44444 56667777776666554332
Q ss_pred h--------cCCCCccEEEeeCCCCCCCChhhhcC---CCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCC
Q psy16377 236 F--------VALSSLRILNISSNHLVSLPEGLFSS---CRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304 (1344)
Q Consensus 236 ~--------~~l~~L~~L~Ls~n~l~~l~~~~f~~---l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~ 304 (1344)
+ ..+++|++|++++|.+....+..|.. .++|+.|++++|....... ..+.+..
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~-- 263 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKD-- 263 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCC--
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhcc--
Confidence 2 23455666666666555433222221 1445555554443322110 0111111
Q ss_pred CCcccccC--CCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccc
Q psy16377 305 IDETTFIG--LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382 (1344)
Q Consensus 305 i~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~ 382 (1344)
.....+.+ .++|+.|++++|.+..+.+..|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+..+..|
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 11222222 3689999999999999888889999999999999999999888889999999999999999999988889
Q ss_pred cCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch-hhcCCCCccEEEccCCCCCccCc
Q psy16377 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIEN 450 (1344)
Q Consensus 383 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~ 450 (1344)
.++++|+.|++++|.+.++.+..|..+++|++|++++|.++.+|. .+..+++|++|++++|++....+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999988999999999999999999998875 46889999999999999887544
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-34 Score=350.54 Aligned_cols=408 Identities=23% Similarity=0.264 Sum_probs=239.1
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc-------------cEEEeeCCCCCCCC
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL-------------RILNISSNHLVSLP 256 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~l~ 256 (1344)
.++|++|++++|.+..+|. .++++++|++|++++|.+.+..|..++++.+| ++|++++|.++++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~--~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPV--EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCchhhCCh--hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 5789999999999988887 59999999999999999998889999998875 88888888888877
Q ss_pred hhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccC
Q psy16377 257 EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD 336 (1344)
Q Consensus 257 ~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 336 (1344)
.. .++|++|++++|.++.+|. .+++|+.|++++|.+++ ++. + .++|++|++++|.+++++ .|..
T Consensus 88 ~~----~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--l~~--~--~~~L~~L~L~~n~l~~lp--~~~~ 151 (454)
T 1jl5_A 88 EL----PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LSD--L--PPLLEYLGVSNNQLEKLP--ELQN 151 (454)
T ss_dssp SC----CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CCS--C--CTTCCEEECCSSCCSSCC--CCTT
T ss_pred CC----cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--ccC--C--CCCCCEEECcCCCCCCCc--ccCC
Confidence 62 4678888888888887764 24788888888888765 221 1 157888888888888754 4778
Q ss_pred CCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEE
Q psy16377 337 LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416 (1344)
Q Consensus 337 l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 416 (1344)
+++|+.|++++|.+..++. ..++|+.|++++|.+.+++ .+.++++|+.|++++|.+.++.. ..++|+.|+
T Consensus 152 l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEEE
Confidence 8888888888888877654 2357888888888877754 46777888888888887776532 125788888
Q ss_pred ccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377 417 LSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 417 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
+++|.+..+|. +..+++|++|++++|++.+++. .+++|+.|++++|.++.++.. +++|+.|++++|+++++
T Consensus 222 l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 222 AGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEE
T ss_pred CcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcc
Confidence 88888777774 7777888888888887776543 236778888888877766642 36777788877777665
Q ss_pred ccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCc
Q psy16377 497 EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS 576 (1344)
Q Consensus 497 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~ 576 (1344)
.. + .++|+.|++++|.+++++.. .++|+.|++++|++..++. .+++|+.|++++|.++.++. .+++
T Consensus 293 ~~--~--~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp~-----~l~~ 358 (454)
T 1jl5_A 293 SE--L--PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-----LPQN 358 (454)
T ss_dssp SC--C--CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTT
T ss_pred cC--c--CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc--cCCcCCEEECCCCccccccc-----hhhh
Confidence 32 1 25677777777777665421 2467777777777765432 24567777777777776654 2456
Q ss_pred ccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEE
Q psy16377 577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656 (1344)
Q Consensus 577 L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~ 656 (1344)
|+.|++++|++++++ .+|.++..|. .|.+.+..|.. +++|+.|++++|++++++. +| .++..+.
T Consensus 359 L~~L~L~~N~l~~l~--~ip~~l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~-------iP--~sl~~L~ 422 (454)
T 1jl5_A 359 LKQLHVEYNPLREFP--DIPESVEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPD-------IP--ESVEDLR 422 (454)
T ss_dssp CCEEECCSSCCSSCC--CCCTTCCEEE--CCC------------------------------------------------
T ss_pred ccEEECCCCCCCcCC--CChHHHHhhh--hcccccccccc---cCcCCEEECCCCcCCcccc-------ch--hhHhhee
Confidence 777777777776643 2344555443 34444444432 4789999999999986421 12 2456667
Q ss_pred cCCCcccc
Q psy16377 657 LGGNPFDC 664 (1344)
Q Consensus 657 l~~Np~~C 664 (1344)
+++|.+.|
T Consensus 423 ~~~~~~~~ 430 (454)
T 1jl5_A 423 MNSERVVD 430 (454)
T ss_dssp --------
T ss_pred CcCcccCC
Confidence 77766544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.6e-34 Score=347.19 Aligned_cols=349 Identities=21% Similarity=0.274 Sum_probs=195.4
Q ss_pred CCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCC-------------CCEEEccCC
Q psy16377 70 IYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRE-------------LQVLNISSS 136 (1344)
Q Consensus 70 l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~-------------L~~L~Ls~n 136 (1344)
.++|++|++++|+++.+| ..|+++++|++|++++|.+. ..+|..++++++ |++|++++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP-~~i~~L~~L~~L~l~~n~~~-------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWE-------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHH-------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccchhhhcccCchhhCC-hhHhcccchhhhhccCCccc-------ccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 356666666666666665 34666666666666544432 235556666554 577888888
Q ss_pred CCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCC
Q psy16377 137 NIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR 216 (1344)
Q Consensus 137 ~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~ 216 (1344)
.++++|. -.++|++|++++|.+++++.. .++|++|++++|++++++.. .+
T Consensus 82 ~l~~lp~----~~~~L~~L~l~~n~l~~lp~~---------------------~~~L~~L~l~~n~l~~l~~~-----~~ 131 (454)
T 1jl5_A 82 GLSSLPE----LPPHLESLVASCNSLTELPEL---------------------PQSLKSLLVDNNNLKALSDL-----PP 131 (454)
T ss_dssp CCSCCCS----CCTTCSEEECCSSCCSSCCCC---------------------CTTCCEEECCSSCCSCCCSC-----CT
T ss_pred ccccCCC----CcCCCCEEEccCCcCCccccc---------------------cCCCcEEECCCCccCcccCC-----CC
Confidence 7777765 136778888888777765431 35777888888877766542 15
Q ss_pred CCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEcc
Q psy16377 217 RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296 (1344)
Q Consensus 217 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 296 (1344)
+|++|++++|.++++ | .|+++++|++|++++|.++.+|.. ..+|++|++++|.+..++. |.++++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECC
Confidence 777888887777764 4 477777788888877777776643 2467777777777777652 5677777777777
Q ss_pred CCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccc
Q psy16377 297 SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHH 376 (1344)
Q Consensus 297 ~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~ 376 (1344)
+|.+++ ++. ...+|+.|++++|.+..++ .+..+++|+.|++++|.+..++. .+++|+.|++++|.+.+
T Consensus 204 ~N~l~~--l~~----~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 204 NNSLKK--LPD----LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SSCCSS--CCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC
T ss_pred CCcCCc--CCC----CcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc
Confidence 777664 221 1246667777777666543 26666666777776666665543 23566666666666655
Q ss_pred cccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCC
Q psy16377 377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNL 456 (1344)
Q Consensus 377 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 456 (1344)
++. ..++|+.|++++|.+.++.. -.++|+.|++++|.+..++.. .++|++|++++|++++++. .+
T Consensus 272 l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~----~~ 336 (454)
T 1jl5_A 272 LPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA----LP 336 (454)
T ss_dssp CCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC----CC
T ss_pred cCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc----cC
Confidence 332 12456666666665554321 114555666666655544321 1355555555555555332 13
Q ss_pred CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377 457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 457 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
++|+.|++++|.++.++. .+++|++|++++|++++
T Consensus 337 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred CcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence 455555555555555543 24555555555555554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-31 Score=327.38 Aligned_cols=280 Identities=28% Similarity=0.411 Sum_probs=125.0
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
+++|++|++++|.++.+++ +.++++|++|++++|.+.++.+ +.++++|++|++++|.+..++. +..+++|++|
T Consensus 89 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 161 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQL 161 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEE
T ss_pred cccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEe
Confidence 3444444444444443332 3444444444444444444321 4444444444444444444332 3444444444
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 349 (1344)
++. +.+..+++ +.++++|+.|++++|.+.. ...+..+++|+.|++++|.+.++.+ +..+++|+.|++++|.
T Consensus 162 ~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 162 SFG-NQVTDLKP--LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232 (466)
T ss_dssp EEE-ESCCCCGG--GTTCTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred ecC-CcccCchh--hccCCCCCEEECcCCcCCC----ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence 443 22222222 3445555555555555443 1224444455555555554444433 3444455555555555
Q ss_pred ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429 (1344)
Q Consensus 350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l 429 (1344)
+..++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.++.+ +..+++|+.|++++|.+..++. +
T Consensus 233 l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~ 305 (466)
T 1o6v_A 233 LKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-I 305 (466)
T ss_dssp CCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-G
T ss_pred cccch--hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-h
Confidence 44432 24444555555555555444433 3444444444444444444332 4444444555554444444433 3
Q ss_pred cCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 430 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|++++.
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCcc
Confidence 444444444444444444332 334444444444444443332 234444444444444444333
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-31 Score=328.27 Aligned_cols=347 Identities=26% Similarity=0.387 Sum_probs=206.7
Q ss_pred CCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcC
Q psy16377 69 NIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCS 148 (1344)
Q Consensus 69 ~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 148 (1344)
.+++|+.|++.++.+..++. +..+++|++|+|++|.+.. ++. +.++++|++|++++|.+..+++ +.+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD--------ITP-LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCC--------chh-hhccccCCEEECCCCccccChh--hcC
Confidence 35677888888887777763 6777777777776555432 233 6777777777777777777665 677
Q ss_pred CCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCC
Q psy16377 149 LANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228 (1344)
Q Consensus 149 l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i 228 (1344)
+++|++|++++|.+++++. +.++++|++|++++|.++.++ .+..+++|+.|+++ +.+
T Consensus 111 l~~L~~L~L~~n~l~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-------------------LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-------------------GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEE-ESC
T ss_pred CCCCCEEECCCCCCCCChH-------------------HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecC-Ccc
Confidence 7777777777777666543 123667777777777766654 36667777777775 344
Q ss_pred CCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcc
Q psy16377 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET 308 (1344)
Q Consensus 229 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~ 308 (1344)
.+.. .+.++++|++|++++|.+..++. +..+++|++|++++|.+..+++ ++.+++|+.|++++|.+.. ..
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----~~ 237 (466)
T 1o6v_A 168 TDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD----IG 237 (466)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CG
T ss_pred cCch--hhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc----ch
Confidence 4432 26667777777777776666532 4556666666666666655544 3556666666666665543 12
Q ss_pred cccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCce
Q psy16377 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388 (1344)
Q Consensus 309 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 388 (1344)
.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++ + +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------------------------~--~~~l~~L 289 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS------------------------P--LAGLTAL 289 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG------------------------G--GTTCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc------------------------c--ccCCCcc
Confidence 34455555555555555544433 444444555555444444433 3 3444455
Q ss_pred eEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCC
Q psy16377 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468 (1344)
Q Consensus 389 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 468 (1344)
+.|++++|.+.++.+ +..+++|+.|++++|.+..++. +..+++|++|++++|.++++ ..+..+++|+.|++++|.
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence 555555555444432 4455555555555555554433 45556666666666665554 245556666666666666
Q ss_pred CCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377 469 IGNLSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 469 l~~l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
+..+.+ +..+++|+.|++++|+++..
T Consensus 365 l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 365 ISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCccch--hhcCCCCCEEeccCCcccCC
Confidence 655443 55666666666666666554
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=334.96 Aligned_cols=331 Identities=23% Similarity=0.362 Sum_probs=204.1
Q ss_pred CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377 2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC 81 (1344)
Q Consensus 2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~ 81 (1344)
..||..|.|... ++.|.|..+.+..+| ..+ + ..++.|+|++|.+ ..+++..|.++++|++|+|++|
T Consensus 1 ~~Cp~~C~C~~~-----~~~v~c~~~~l~~ip-~~~---~-~~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n 66 (477)
T 2id5_A 1 TGCPPRCECSAQ-----DRAVLCHRKRFVAVP-EGI---P-TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNEN 66 (477)
T ss_dssp CCCSTTCEEETT-----TTEEECCSCCCSSCC-SCC---C-TTCSEEECCSSCC----CEECTTTTTTCTTCCEEECTTS
T ss_pred CcccCCCeECCC-----CCEEEeCCCCcCcCC-CCC---C-CCCcEEECCCCcc----ceECHhHccCCCCCCEEECCCC
Confidence 369999999531 237999999999998 433 2 5688999999988 3466678888999999999988
Q ss_pred cCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC
Q psy16377 82 KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS 161 (1344)
Q Consensus 82 ~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~ 161 (1344)
.+..+++.+|+++++|++|+|++|.+. .+.+..|.++++|++|+|++|.+..+++..|..+++|++|++++|.
T Consensus 67 ~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 67 IVSAVEPGAFNNLFNLRTLGLRSNRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred ccCEeChhhhhCCccCCEEECCCCcCC-------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 888887777888888888888765543 2334456777788888888877777776667777777777777776
Q ss_pred CCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCC
Q psy16377 162 IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241 (1344)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 241 (1344)
+..+....| .++++|+.|+|++|.++.++.. .+.++++|+.|+|++|.+.++.+..|..+++
T Consensus 140 l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 140 LVYISHRAF-----------------SGLNSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp CCEECTTSS-----------------TTCTTCCEEEEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred cceeChhhc-----------------cCCCCCCEEECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 665543332 2355666666666666665543 4556666666666666666665555666666
Q ss_pred ccEEEeeCCCCC-CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377 242 LRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN 320 (1344)
Q Consensus 242 L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~ 320 (1344)
|++|++++|... .++...+. ..+|++|++++|.++.++...|..+++|+.|+|++|.+++ +....|.++++|+.|+
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQ 278 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEE
T ss_pred cceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEE
Confidence 666666665432 34433332 2255555555555555555555555555555555555543 3333444445555555
Q ss_pred ccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcc
Q psy16377 321 LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374 (1344)
Q Consensus 321 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 374 (1344)
|++|.+..+.+..|..+++|+.|+|++|.++.++...|..+++|+.|++++|++
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 555554444444444444444444444444444444444444444444444443
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=4.6e-31 Score=325.61 Aligned_cols=321 Identities=25% Similarity=0.342 Sum_probs=271.3
Q ss_pred ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272 (1344)
Q Consensus 193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 272 (1344)
-+.++.++++++.+|.. + .++|+.|+|++|.++++.+..|.++++|++|+|++|.+..+++..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~~ip~~--~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEG--I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCSC--C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcCCCC--C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 45788888888888863 3 3688999999999999888889999999999999999998888888999999999999
Q ss_pred cCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccc
Q psy16377 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352 (1344)
Q Consensus 273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 352 (1344)
+|.+..++...|.++++|++|+|++|.+.. +....|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCcCCccCcccccCCCCCCEEECCCCcccc--CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 999999988888889999999999998876 556678888999999999999888888888889999999999999988
Q ss_pred cchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc-hhhcC
Q psy16377 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSE 431 (1344)
Q Consensus 353 i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~ 431 (1344)
++...|..+++|+.|++++|.+.++.+..|..+++|+.|++++|...+..+.......+|+.|++++|.++.+| ..+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 88888888999999999999888888888888888888888887765544444444558888888888888887 46788
Q ss_pred CCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEe
Q psy16377 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIR 511 (1344)
Q Consensus 432 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 511 (1344)
+++|+.|+|++|.+.++.+..|..+++|+.|+|++|.+..+.+..|.++++|+.|++++|+++.+....|..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 88888888888888888888888888888888888888887777788888888888888888888887888888888888
Q ss_pred ccccCCCC
Q psy16377 512 LDSNFLTD 519 (1344)
Q Consensus 512 L~~n~l~~ 519 (1344)
+++|.+..
T Consensus 327 l~~N~l~c 334 (477)
T 2id5_A 327 LDSNPLAC 334 (477)
T ss_dssp CCSSCEEC
T ss_pred ccCCCccC
Confidence 88887763
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.1e-30 Score=313.32 Aligned_cols=226 Identities=23% Similarity=0.240 Sum_probs=143.4
Q ss_pred CCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCc
Q psy16377 188 SGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS 267 (1344)
Q Consensus 188 ~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~ 267 (1344)
+.+++|++|++++|.+++++ .+..+++|++|++++|.++++ + ++.+++|++|++++|.++.++ |..+++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~ 109 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---VTPLTKLT 109 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT---TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred hHcCCCCEEEccCCCcccCh---hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence 34677888888888887765 367778888888888887776 2 777778888888888777764 56777777
Q ss_pred EEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecC
Q psy16377 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRN 347 (1344)
Q Consensus 268 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 347 (1344)
+|++++|.++.++ +..+++|+.|++++|.+++ + .+..+++|+.|++++|...+.. .+..+++|+.|++++
T Consensus 110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE--I---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC--C---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred EEECCCCcCCeec---CCCCCcCCEEECCCCccce--e---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 7777777777764 5677777777777777765 2 2556667777777776432222 255566666666666
Q ss_pred CCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch
Q psy16377 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS 427 (1344)
Q Consensus 348 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 427 (1344)
|.++.++ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+++ +..+++|+.|++++|.++.+|
T Consensus 180 n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 180 NKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred Cccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC-
Confidence 6666554 45556666666666665554 1445555555555555555542 444555555555555555443
Q ss_pred hhcCCCCccEEEccCC
Q psy16377 428 ALSELPFLKTLDLGEN 443 (1344)
Q Consensus 428 ~l~~l~~L~~L~Ls~n 443 (1344)
+..+++|+.|++++|
T Consensus 250 -~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT 264 (457)
T ss_dssp -CTTCTTCCEEECTTC
T ss_pred -HHHCCCCCEEeccCC
Confidence 334455555555443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.6e-30 Score=313.89 Aligned_cols=357 Identities=22% Similarity=0.273 Sum_probs=189.5
Q ss_pred cCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCC
Q psy16377 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH 200 (1344)
Q Consensus 121 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 200 (1344)
.++++++|++|++++|.++.++ .+..+++|++|++++|.+++++ ++.+++|++|++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--------------------~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--------------------LSQNTNLTYLACDS 94 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--------------------CTTCTTCSEEECCS
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--------------------cccCCCCCEEECcC
Confidence 4566777777777777777765 3667777777777777766542 12356677777777
Q ss_pred CCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccC-ccccc
Q psy16377 201 NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN-SLVEL 279 (1344)
Q Consensus 201 n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n-~l~~l 279 (1344)
|.+++++ ++++++|++|++++|.++++ + ++.+++|++|++++|.++.++ +..+++|++|++++| .+..+
T Consensus 95 N~l~~~~----~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 95 NKLTNLD----VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp SCCSCCC----CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC
T ss_pred CCCceee----cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc
Confidence 7766652 55666777777777766664 2 666666666666666666653 345555666666555 23333
Q ss_pred ChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhc
Q psy16377 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359 (1344)
Q Consensus 280 ~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~ 359 (1344)
+ +..+++|+.|++++|.+++ ++ +..+++|+.|++++|.++++ + +.
T Consensus 165 ~---~~~l~~L~~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~l~~~------------------------~---l~ 209 (457)
T 3bz5_A 165 D---VTPQTQLTTLDCSFNKITE--LD---VSQNKLLNRLNCDTNNITKL------------------------D---LN 209 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCCC--CC---CTTCTTCCEEECCSSCCSCC------------------------C---CT
T ss_pred c---cccCCcCCEEECCCCccce--ec---cccCCCCCEEECcCCcCCee------------------------c---cc
Confidence 1 3445555555555555544 21 44445555555555554443 1 34
Q ss_pred CCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEE
Q psy16377 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLD 439 (1344)
Q Consensus 360 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 439 (1344)
.+++|+.|++++|++.+++ +..+++|+.|++++|.+.++. +..+++|+.|++++|. |+.|+
T Consensus 210 ~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------L~~L~ 270 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD-------------LLEID 270 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC-------------CSCCC
T ss_pred cCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC-------------CCEEE
Confidence 4445555555555554432 344455555555555555443 2334555555554432 33444
Q ss_pred ccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC
Q psy16377 440 LGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518 (1344)
Q Consensus 440 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 518 (1344)
+++|.+.+..+ +..+++|+.|++++|.. +.++. ..++|+.|++++| ++|+.|++++|.++
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQN-------------PKLVYLYLNNTELT 331 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTTC-------------TTCCEEECTTCCCS
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceecc----CCCcceEechhhc-------------ccCCEEECCCCccc
Confidence 55554333322 23445555555555543 22221 1233333333322 44555555555555
Q ss_pred ChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCc
Q psy16377 519 DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS 598 (1344)
Q Consensus 519 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~s 598 (1344)
+++ +..+++|+.|++++|+++.+ +.|..|++++|.+.+.. -...
T Consensus 332 ~l~--l~~l~~L~~L~l~~N~l~~l-------------------------------~~L~~L~l~~n~l~g~~---~~~~ 375 (457)
T 3bz5_A 332 ELD--VSHNTKLKSLSCVNAHIQDF-------------------------------SSVGKIPALNNNFEAEG---QTIT 375 (457)
T ss_dssp CCC--CTTCTTCSEEECCSSCCCBC-------------------------------TTGGGSSGGGTSEEEEE---EEEE
T ss_pred ccc--cccCCcCcEEECCCCCCCCc-------------------------------cccccccccCCcEEecc---eeee
Confidence 542 45555555555555555421 12333445555555431 1124
Q ss_pred ccEEEcCCCcCCccCCCCCC
Q psy16377 599 VEVLFINNNLIKSVKPHTFF 618 (1344)
Q Consensus 599 L~~L~Ls~N~i~~~~~~~f~ 618 (1344)
|+.+++++|+++|.+|..+.
T Consensus 376 l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 376 MPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CCCBCCBTTBEEEECCTTCB
T ss_pred cCccccccCcEEEEcChhHh
Confidence 55667777777766665443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.3e-29 Score=300.39 Aligned_cols=311 Identities=24% Similarity=0.316 Sum_probs=189.4
Q ss_pred CCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCC
Q psy16377 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR 204 (1344)
Q Consensus 125 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~ 204 (1344)
+++|++|++++|.++.+|...|..+++|++|++++|.+++++...| .++++|++|+|++|.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----------------~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-----------------AYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-----------------TTCTTCCEEECCSSCCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-----------------cCCCCcCEEECCCCCCC
Confidence 4677778888887777777777777777777777777665544333 23566666666666666
Q ss_pred CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhh
Q psy16377 205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF 284 (1344)
Q Consensus 205 ~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~ 284 (1344)
.+++. .+.++++|++|+|++|.+..+.+..|.++++|++|++++|.+..+++..|..+++|++|++++|.++.++ +
T Consensus 107 ~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~ 182 (390)
T 3o6n_A 107 YLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L 182 (390)
T ss_dssp CCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---G
T ss_pred cCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---c
Confidence 66554 5566666666666666666554444566666666666666666665555566666666666666555554 2
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCc
Q psy16377 285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364 (1344)
Q Consensus 285 ~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L 364 (1344)
..+++|+.|++++|.++. +....+|+.|++++|.+.. ++.. ..++|
T Consensus 183 ~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~l~~n~l~~------------------------~~~~---~~~~L 228 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSINV------------------------VRGP---VNVEL 228 (390)
T ss_dssp GGCTTCSEEECCSSCCSE-------EECCSSCSEEECCSSCCCE------------------------EECC---CCSSC
T ss_pred ccccccceeecccccccc-------cCCCCcceEEECCCCeeee------------------------cccc---ccccc
Confidence 345555666665555432 1122344444444444443 3321 12445
Q ss_pred cEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ 444 (1344)
Q Consensus 365 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 444 (1344)
+.|++++|.+.+. ..+..+++|+.|++++|.+.++.+..|..+++|+.|++++|.+..+|..+..+++|++|++++|+
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 5555555555443 23455556666666666666555556666666666666666666666666666777777777777
Q ss_pred CCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377 445 ISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 445 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
+..++. .+..+++|+.|++++|.+..++ +..+++|+.|++++|++...
T Consensus 307 l~~~~~-~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 307 LLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred ceecCc-cccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 665533 3556677777777777776664 45667777778877776543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-28 Score=290.48 Aligned_cols=304 Identities=25% Similarity=0.397 Sum_probs=189.2
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
+++|+.|+++++.+..++ .+..+++|++|++++|.++++.+ +.++++|++|++++|.++.++ .|..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~~---~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred cccccEEEEeCCccccch---hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCEE
Confidence 567777788777777665 36667777777777777776633 777777777777777777664 36677777777
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 349 (1344)
++++|.+..+++ +..+++|+.|++++|.... ....+..+++|+.|++++|.+..+.+ +..+++|+.|++++|.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLS---DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCC---CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcc---cccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 777777766655 5667777777777664332 12335555666666666665554433 4455555555555555
Q ss_pred ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429 (1344)
Q Consensus 350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l 429 (1344)
+..++. + ..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++. +
T Consensus 189 l~~~~~--~------------------------~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~ 239 (347)
T 4fmz_A 189 IEDISP--L------------------------ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-L 239 (347)
T ss_dssp CCCCGG--G------------------------GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred cccccc--c------------------------cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-h
Confidence 544433 3 444445555555554444432 4455556666666666555544 5
Q ss_pred cCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccce
Q psy16377 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509 (1344)
Q Consensus 430 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 509 (1344)
..+++|++|++++|.++++ ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|++....+..|..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 5566666666666666554 24556666666666666665553 2566677777777777776666666666777777
Q ss_pred EeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 510 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
|++++|.+++++. +..+++|+.|++++|.++
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC-hhhhhccceeehhhhccc
Confidence 7777777776655 667777777777777664
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.7e-29 Score=300.04 Aligned_cols=308 Identities=24% Similarity=0.327 Sum_probs=216.2
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
.+++.|++++|.++.+|.. .+..+++|++|+|++|.+.++.+..|.++++|++|++++|.+..+++..|.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChh-HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 4445555555555544443 344455555555555555555444555555555555555555555555455555555555
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
+++|.+..++...|.++++|++|++++|.+.+ +....+..+++|+.|++++|.++.+. +..+++|+.|++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 55555555555545555555555555555544 33444555566666666666555542 34456777777777776
Q ss_pred cccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCcc-chhh
Q psy16377 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI-PSAL 429 (1344)
Q Consensus 351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l 429 (1344)
..+. ..++|+.|++++|.+...... ..++|+.|++++|.+.+. ..+..+++|++|++++|.+..+ |..+
T Consensus 199 ~~~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STLA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEEE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 6543 346899999999999887543 347899999999999886 4788999999999999999965 7789
Q ss_pred cCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccce
Q psy16377 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509 (1344)
Q Consensus 430 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 509 (1344)
..+++|++|++++|+++++.. .+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++.+. +..+++|+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCE
Confidence 999999999999999998743 557789999999999999988765 677899999999999998875 667789999
Q ss_pred EeccccCCCC
Q psy16377 510 IRLDSNFLTD 519 (1344)
Q Consensus 510 L~L~~n~l~~ 519 (1344)
|++++|.+..
T Consensus 344 L~l~~N~~~~ 353 (390)
T 3o6n_A 344 LTLSHNDWDC 353 (390)
T ss_dssp EECCSSCEEH
T ss_pred EEcCCCCccc
Confidence 9999999875
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2e-28 Score=288.68 Aligned_cols=305 Identities=22% Similarity=0.352 Sum_probs=224.2
Q ss_pred CCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCE
Q psy16377 213 TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292 (1344)
Q Consensus 213 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 292 (1344)
..+++|+.|+++++.+..+ + .+..+++|++|++++|.++.++. |..+++|++|++++|.+..++ .|..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCE
Confidence 4456666666666666554 2 35556666666666666655544 455555555555555554443 1344455555
Q ss_pred EEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCC
Q psy16377 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372 (1344)
Q Consensus 293 L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n 372 (1344)
|++++| .+..+.+ +..+++|+.|++++|....... .+..+++|+.|++++|
T Consensus 115 L~l~~n--------------------------~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 115 LYLNED--------------------------NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165 (347)
T ss_dssp EECTTS--------------------------CCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred EECcCC--------------------------cccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence 555544 4444433 4555566666666663322222 2667777777777777
Q ss_pred cccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcch
Q psy16377 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452 (1344)
Q Consensus 373 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~ 452 (1344)
.+.+..+ +..+++|+.|++++|.+.++.+ +..+++|+.|++++|.+..++. +..+++|++|++++|.+++..+
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--
Confidence 7766655 6778888889999888887754 8889999999999999998866 8899999999999999998765
Q ss_pred hcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCCh-hhHhhcCCCCc
Q psy16377 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLL 531 (1344)
Q Consensus 453 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~ 531 (1344)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.++.. +..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 889999999999999998874 488999999999999999987 3688899999999999999865 47789999999
Q ss_pred EEEcCCCCCccccCCCcCCCccEEEcCCCcCC
Q psy16377 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYIS 563 (1344)
Q Consensus 532 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~ 563 (1344)
.|++++|+++..+...-.++|+.|++++|.|+
T Consensus 315 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccChhhhhccceeehhhhccc
Confidence 99999999987755444478999999999886
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.5e-28 Score=309.10 Aligned_cols=310 Identities=25% Similarity=0.327 Sum_probs=200.8
Q ss_pred CCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCC
Q psy16377 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR 204 (1344)
Q Consensus 125 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~ 204 (1344)
+.+++.|++++|.+..+|+..|..+++|++|+|++|.+++++...| .++++|++|+|++|.++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~L~~L~L~~n~l~ 112 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-----------------AYAHTIQKLYMGFNAIR 112 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-----------------TTCTTCCEEECCSSCCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-----------------cCCCCCCEEECCCCcCC
Confidence 4677778888877777777777777777777777777765544333 23566666666666666
Q ss_pred CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhh
Q psy16377 205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF 284 (1344)
Q Consensus 205 ~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~ 284 (1344)
.+++. .|+++++|++|+|++|.++++.+..|+++++|++|+|++|.+..+++..|..+++|+.|++++|.+..++.
T Consensus 113 ~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--- 188 (597)
T 3oja_B 113 YLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--- 188 (597)
T ss_dssp CCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---
T ss_pred CCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---
Confidence 66554 55666666666666666666655555666666666666666666666555666666666666666555542
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCc
Q psy16377 285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364 (1344)
Q Consensus 285 ~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L 364 (1344)
..+++|+.|++++|.+.+ +....+| +.|++++|.+..++... .++|
T Consensus 189 ~~l~~L~~L~l~~n~l~~-------l~~~~~L------------------------~~L~ls~n~l~~~~~~~---~~~L 234 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLST-------LAIPIAV------------------------EELDASHNSINVVRGPV---NVEL 234 (597)
T ss_dssp GGCTTCSEEECCSSCCSE-------EECCTTC------------------------SEEECCSSCCCEEECSC---CSCC
T ss_pred hhhhhhhhhhcccCcccc-------ccCCchh------------------------heeeccCCccccccccc---CCCC
Confidence 344555666665554432 1222344 44444444444433321 2456
Q ss_pred cEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ 444 (1344)
Q Consensus 365 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 444 (1344)
+.|++++|.+.+. ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.
T Consensus 235 ~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 235 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence 6666666665553 34556666777777777766666667777777777777777777777777777888888888887
Q ss_pred CCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377 445 ISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 445 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
+..++ ..+..+++|+.|+|++|.+..++ +..+++|+.|++++|++..
T Consensus 313 l~~i~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 313 LLHVE-RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCCG-GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCccC-cccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 77653 34667788888888888887665 5677889999999998764
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6e-28 Score=305.66 Aligned_cols=311 Identities=24% Similarity=0.320 Sum_probs=187.6
Q ss_pred CCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEE
Q psy16377 215 FRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLD 294 (1344)
Q Consensus 215 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 294 (1344)
+.+++.|++++|.+..+.+..|.++++|++|+|++|.+..+++..|..+++|++|+|++|.+..+++..|+++++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555555555555555554555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcc
Q psy16377 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374 (1344)
Q Consensus 295 Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 374 (1344)
|++|.++. ++...|.++++|+.|+|++|.+.++.+..|..+++|+.|++++ |.+
T Consensus 130 L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------------------------N~l 183 (597)
T 3oja_B 130 LERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS------------------------NRL 183 (597)
T ss_dssp CCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT------------------------SCC
T ss_pred eeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC------------------------CCC
Confidence 55555543 3333344445555555555554444444444444444444444 444
Q ss_pred cccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhc
Q psy16377 375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK 454 (1344)
Q Consensus 375 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 454 (1344)
.+.. +..+++|+.|++++|.+.++ ....+|+.|++++|.+..++..+ .++|+.|+|++|.+++. ..+.
T Consensus 184 ~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~ 251 (597)
T 3oja_B 184 THVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLL 251 (597)
T ss_dssp SBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGG
T ss_pred CCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhc
Confidence 4432 23334455555555544332 22345667777777666555433 25677777777777664 4566
Q ss_pred CCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEE
Q psy16377 455 NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLN 534 (1344)
Q Consensus 455 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~ 534 (1344)
.+++|+.|+|++|.+..+.+..|..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence 77777777777777766655667777777788887777777633 34557788888888888888887778888888888
Q ss_pred cCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccc
Q psy16377 535 LSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI 590 (1344)
Q Consensus 535 Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~ 590 (1344)
|++|.+..++ +..+++|+.|++++|.+.+.
T Consensus 331 L~~N~l~~~~--------------------------~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 331 LDHNSIVTLK--------------------------LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSSCCCCCC--------------------------CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCCCcC--------------------------hhhcCCCCEEEeeCCCCCCh
Confidence 8888775432 22345788888888888763
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.1e-27 Score=277.84 Aligned_cols=290 Identities=24% Similarity=0.387 Sum_probs=230.4
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
..+++.++++++.++.+|.. + .++|+.|+|++|.++++.+..|.++++|++|+|++|.+..+++..|..+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~--~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKD--L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCS--C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCcc--C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 34799999999999988864 3 3689999999999999988889999999999999999999988888999999999
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc--cccccccCCCcccEEEecC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR--IDAKTFKDLVFLQRLDLRN 347 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~ 347 (1344)
++++|.++.++...+ ++|++|++++|.+.+ +....|.++++|+.|++++|.+.. ..+..|..+++|+.|++++
T Consensus 106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 106 YLSKNQLKELPEKMP---KTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp ECCSSCCSBCCSSCC---TTCCEEECCSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ECCCCcCCccChhhc---ccccEEECCCCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 999999998887653 789999999999886 666778889999999999998864 5667788889999999999
Q ss_pred CCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch
Q psy16377 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS 427 (1344)
Q Consensus 348 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 427 (1344)
|.+..++...+ ++|+.|++++|.+.+..+..|.++++|+.|++++|.+.++.+..|..+++|+.|++++|.+..+|.
T Consensus 181 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 181 TNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp SCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred CccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 99888776432 788999999999888888888888889999999988888877788888889999999888888888
Q ss_pred hhcCCCCccEEEccCCCCCccCcchhcCC------CCCcEEEcccCCCC--CCCcccccCCCCccEEEcCCC
Q psy16377 428 ALSELPFLKTLDLGENQISKIENGSFKNL------QQLTDLRLVDNNIG--NLSSGMLYELPSLEVLNLSKN 491 (1344)
Q Consensus 428 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~n 491 (1344)
.+..+++|++|++++|.++++....|... ..|+.|++++|.+. .+++..|..+.+|+.+++++|
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 88888888888888888888777666432 33444444444442 133333444444444444433
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=290.09 Aligned_cols=294 Identities=21% Similarity=0.251 Sum_probs=230.8
Q ss_pred CcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCC
Q psy16377 530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNN 607 (1344)
Q Consensus 530 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N 607 (1344)
...++.+++.++.++. .+|.+++.|+|++|+++.++. ..+..+++|+.|++++|.+.++.+..+. .+|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4456666666665553 455677777777777776653 2356677888888888888887765554 57888888888
Q ss_pred cCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccC
Q psy16377 608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYP 687 (1344)
Q Consensus 608 ~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~ 687 (1344)
++..+.+..|..+++|+.|+|++|.|+.+....+. .
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~--------------------------------------- 158 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----R--------------------------------------- 158 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-----T---------------------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-----h---------------------------------------
Confidence 88888877888888888888888877654321110 0
Q ss_pred ccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCC
Q psy16377 688 KIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ 767 (1344)
Q Consensus 688 ~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~ 767 (1344)
T Consensus 159 -------------------------------------------------------------------------------- 158 (440)
T 3zyj_A 159 -------------------------------------------------------------------------------- 158 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccEEEEeC-CcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCccccc
Q psy16377 768 ISTVPPRIPMDATHVYLDG-NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846 (1344)
Q Consensus 768 l~~~p~~ip~~l~~L~L~~-n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~ 846 (1344)
...++.|+|++ |.+..++...|.++++|+.|+|++|+++.++ .+..+++|+.|+|++|+|+.+.+..|.
T Consensus 159 --------l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 159 --------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp --------CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred --------CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhc
Confidence 02356677776 5677788888999999999999999999886 488999999999999999999999999
Q ss_pred CccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhc
Q psy16377 847 NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN 926 (1344)
Q Consensus 847 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~ 926 (1344)
++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|||.|||+ +.||..|+++.
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~-l~~l~~~~~~~ 307 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD-ILWLSWWIKDM 307 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST-THHHHHHHHTT
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC-chHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 79999999765
Q ss_pred CCccCCCCCeeecCCCCCCCcc-ccccCCcccccCc
Q psy16377 927 SNKVKDGLDISCVIDESSPPIR-KEIDLNSTTCTEY 961 (1344)
Q Consensus 927 ~~~v~~~~~~~C~~~~~~~~~~-~~~~~~~~~C~~~ 961 (1344)
.. ......++|..|....+.. ..++.....|..+
T Consensus 308 ~~-~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P 342 (440)
T 3zyj_A 308 AP-SNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 342 (440)
T ss_dssp SC-SSCSCCCBEEESTTTTTCBCC----CCSCCCCC
T ss_pred cc-cCCccccCCCChhHhcCccHhHhhhhhccCCCC
Confidence 32 2334568999987654321 1122333468654
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.5e-27 Score=279.23 Aligned_cols=288 Identities=23% Similarity=0.361 Sum_probs=228.3
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
.+++.++++++.++.+|.. + .++|+.|++++|.+.++.+..|.++++|++|++++|.++.+++..|.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~--~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE--I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSC--C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCC--C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4789999999999998874 3 37899999999999999888999999999999999999999888889999999999
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc--cccccccCCCcccEEEecCC
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR--IDAKTFKDLVFLQRLDLRNN 348 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n 348 (1344)
+++|.+..++...+ ++|++|++++|.+.. +....|..+++|+.|++++|.++. ..+..|..+ +|+.|++++|
T Consensus 109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRK--VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCSSCCCSCCSSCC---TTCCEEECCSSCCCC--CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCCCcCCccCcccc---ccCCEEECCCCccCc--cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 99999998887654 789999999999886 666778889999999999998864 566677777 8899999999
Q ss_pred CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchh
Q psy16377 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428 (1344)
Q Consensus 349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 428 (1344)
.+..++...+ ++|+.|++++|.+.+..+..|.++++|+.|++++|.+.++.+..|..+++|+.|++++|.+..+|..
T Consensus 183 ~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 183 KLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp BCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 8888776432 6788888888888888877788888888888888888888877888888888888888888888888
Q ss_pred hcCCCCccEEEccCCCCCccCcchhcCC------CCCcEEEcccCCCC--CCCcccccCCCCccEEEcCCC
Q psy16377 429 LSELPFLKTLDLGENQISKIENGSFKNL------QQLTDLRLVDNNIG--NLSSGMLYELPSLEVLNLSKN 491 (1344)
Q Consensus 429 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~n 491 (1344)
+..+++|++|++++|.++++....|... ..|+.|++.+|.+. .+++..|..+++|+.|++++|
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 8888888888888888887776666542 33445555554443 334444444444444444443
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.6e-27 Score=287.44 Aligned_cols=293 Identities=19% Similarity=0.246 Sum_probs=228.3
Q ss_pred CcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCC
Q psy16377 530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNN 607 (1344)
Q Consensus 530 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N 607 (1344)
...++.++..++.++ ..+|++++.|+|++|.|+.++. ..+..+++|+.|++++|+++++.+..+. .+|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-QGIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccC-CCCCCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 345666666666555 3456677777777777776643 2355677888888888888877665544 57888888888
Q ss_pred cCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccC
Q psy16377 608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYP 687 (1344)
Q Consensus 608 ~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~ 687 (1344)
++..+.+..|.++++|++|+|++|.|+.++...+. .
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~--------------------------------------- 169 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-----R--------------------------------------- 169 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-----T---------------------------------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHh-----c---------------------------------------
Confidence 88887777788888888888888877654321110 0
Q ss_pred ccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCC
Q psy16377 688 KIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ 767 (1344)
Q Consensus 688 ~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~ 767 (1344)
T Consensus 170 -------------------------------------------------------------------------------- 169 (452)
T 3zyi_A 170 -------------------------------------------------------------------------------- 169 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccEEEEeC-CcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCccccc
Q psy16377 768 ISTVPPRIPMDATHVYLDG-NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846 (1344)
Q Consensus 768 l~~~p~~ip~~l~~L~L~~-n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~ 846 (1344)
...++.|++++ |.+..++...|.++++|+.|+|++|+++.++ .+..+++|+.|+|++|+++.+.+..|.
T Consensus 170 --------l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 170 --------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp --------CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred --------CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCccccc
Confidence 02356677776 6677888888999999999999999999885 588999999999999999999999999
Q ss_pred CccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhc
Q psy16377 847 NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN 926 (1344)
Q Consensus 847 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~ 926 (1344)
++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..+..+++|+.|+|++|||.|||+ +.||..|+++.
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~-~~~l~~~l~~~ 318 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD-ILWLAWWLREY 318 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT-THHHHHHHHHH
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC-chHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 79999999875
Q ss_pred CCccCCCCCeeecCCCCCCCccccccCC--cccccCc
Q psy16377 927 SNKVKDGLDISCVIDESSPPIRKEIDLN--STTCTEY 961 (1344)
Q Consensus 927 ~~~v~~~~~~~C~~~~~~~~~~~~~~~~--~~~C~~~ 961 (1344)
... .....++|..|....+. ....++ ...|..+
T Consensus 319 ~~~-~~~~~~~C~~P~~l~g~-~l~~~~~~~~~C~~P 353 (452)
T 3zyi_A 319 IPT-NSTCCGRCHAPMHMRGR-YLVEVDQASFQCSAP 353 (452)
T ss_dssp C----CCSSCBEEESTTTTTC-BTTSCCGGGCCCCCC
T ss_pred Ccc-CCccCcEeCCchHhccc-hhhccchhhhcccCc
Confidence 322 23356899998765432 222332 3467654
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.6e-26 Score=270.27 Aligned_cols=290 Identities=25% Similarity=0.376 Sum_probs=251.0
Q ss_pred CCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCC
Q psy16377 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230 (1344)
Q Consensus 151 ~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~ 230 (1344)
+|+.++++++.++.++... .++|+.|++++|+++.++.. .|.++++|++|+|++|.+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--------------------~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~ 90 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--------------------PPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISK 90 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--------------------CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCC
T ss_pred CCeEEEecCCCccccCccC--------------------CCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCe
Confidence 5777788777777665421 36789999999999999876 79999999999999999999
Q ss_pred cChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccc
Q psy16377 231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310 (1344)
Q Consensus 231 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~ 310 (1344)
+.|..|+++++|++|++++|.++.+|...+ ++|++|++++|.+..+++..|.++++|+.|++++|.+....+....+
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred eCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 989999999999999999999999988765 78999999999999999999999999999999999986433456778
Q ss_pred cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390 (1344)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 390 (1344)
.++++|+.|++++|.++.++...+ ++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred cCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 999999999999999998765433 78999999999999998888999999999999999999998888999999999
Q ss_pred EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchh-hc------CCCCccEEEccCCCCCc--cCcchhcCCCCCcE
Q psy16377 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA-LS------ELPFLKTLDLGENQISK--IENGSFKNLQQLTD 461 (1344)
Q Consensus 391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~ 461 (1344)
|++++|.+..+ +..+..+++|+.|++++|.++.++.. |. ..+.|+.|++++|.+.. +.+..|..+.+|+.
T Consensus 245 L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 99999999966 45688899999999999999988643 32 24789999999999864 67788999999999
Q ss_pred EEcccCC
Q psy16377 462 LRLVDNN 468 (1344)
Q Consensus 462 L~L~~n~ 468 (1344)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 9999874
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.8e-27 Score=275.86 Aligned_cols=289 Identities=25% Similarity=0.366 Sum_probs=236.8
Q ss_pred CCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCC
Q psy16377 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230 (1344)
Q Consensus 151 ~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~ 230 (1344)
+|+.++++++.++.++... .++|+.|++++|.++.+++. .|.++++|++|+|++|.+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--------------------~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--------------------SPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--------------------CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCE
T ss_pred cCCEEECCCCCccccCCCC--------------------CCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCc
Confidence 5778888887777665421 35788888888888887765 68888999999999999988
Q ss_pred cChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccc
Q psy16377 231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310 (1344)
Q Consensus 231 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~ 310 (1344)
+.|.+|+++++|++|++++|.+..+|...+ ++|++|++++|.+..+++..|.++++|+.|++++|.++...+....+
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred cCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 888888999999999999998888887665 78999999999999888888888999999999999886422445666
Q ss_pred cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390 (1344)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 390 (1344)
..+ +|+.|++++|.++.++...+ ++|+.|++++|.+..++...|..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred cCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 776 89999999999888765433 68899999999999888778889999999999999999988888889999999
Q ss_pred EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch-hhcC------CCCccEEEccCCCCC--ccCcchhcCCCCCcE
Q psy16377 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSE------LPFLKTLDLGENQIS--KIENGSFKNLQQLTD 461 (1344)
Q Consensus 391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~ 461 (1344)
|++++|.+..+ |..+..+++|+.|++++|.++.++. .+.. .+.|+.|++++|.+. ++.+..|..+++|+.
T Consensus 246 L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 246 LHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp EECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred EECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 99999999866 4558889999999999999997764 3332 467999999999987 678888999999999
Q ss_pred EEcccCC
Q psy16377 462 LRLVDNN 468 (1344)
Q Consensus 462 L~L~~n~ 468 (1344)
|++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 9998874
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=277.97 Aligned_cols=145 Identities=22% Similarity=0.328 Sum_probs=107.2
Q ss_pred cCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCccccc---Cccccceeecccccccc-----ccCc
Q psy16377 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD---NLEKLSELYLQENRIEY-----IANG 867 (1344)
Q Consensus 796 ~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~---~l~~L~~L~L~~N~l~~-----i~~~ 867 (1344)
.|.++++|+.|++++|+++.+....+..+++|+.|+|++|+++.+....+. ....++.++|++|.|+. ++ .
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~ 271 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-K 271 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH-H
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH-H
Confidence 344455566666666666666555555666777777777777665544332 24556666666665554 43 4
Q ss_pred cccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCC
Q psy16377 868 TFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943 (1344)
Q Consensus 868 ~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~ 943 (1344)
.|..+++|++|+|++|+|+.++.+.|..+++|++|++++|||.|+|+.+.|+..|+++....+ ...+.|..|+.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~p~~ 345 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSGK 345 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE--ESCCBBTTTCC
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC--CCCcccCCCCC
Confidence 678899999999999999999999888999999999999999999988899999998877666 45789988754
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.2e-27 Score=269.74 Aligned_cols=279 Identities=18% Similarity=0.241 Sum_probs=220.4
Q ss_pred cEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccc----ccccCcccEEEcCC
Q psy16377 531 LWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE----LSIPNSVEVLFINN 606 (1344)
Q Consensus 531 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~----~~~~~sL~~L~Ls~ 606 (1344)
+.++++++.++.++. .+|++++.|++++|.++.++. ..+..+++|+.|++++|+++.... ..-..+|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCH-hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 356666666666554 455677777777777776664 124566788888888888775421 11125677777777
Q ss_pred CcCCccCCCCCCCCCCccEEEecCCCCccccc-ccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccc
Q psy16377 607 NLIKSVKPHTFFDKSNLARVDIYANDITKLDL-TALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQ 685 (1344)
Q Consensus 607 N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~-~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~ 685 (1344)
|.+..+ +..|.++++|++|++++|.++.+.. ..+
T Consensus 88 n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------------- 122 (306)
T 2z66_A 88 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF-------------------------------------------- 122 (306)
T ss_dssp CSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTT--------------------------------------------
T ss_pred CccccC-hhhcCCCCCCCEEECCCCcccccccchhh--------------------------------------------
Confidence 777654 3346677777777777776654321 000
Q ss_pred cCccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCC
Q psy16377 686 YPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSE 765 (1344)
Q Consensus 686 ~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~ 765 (1344)
T Consensus 123 -------------------------------------------------------------------------------- 122 (306)
T 2z66_A 123 -------------------------------------------------------------------------------- 122 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCccc
Q psy16377 766 QQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYE 844 (1344)
Q Consensus 766 ~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 844 (1344)
.. ...++.|++++|.+..+....|.++++|+.|++++|.+.. +.+..|..+++|++|+|++|+++.+.+..
T Consensus 123 ---~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 123 ---LS-----LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp ---TT-----CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ---hh-----ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 00 0246788888899888888889999999999999999987 67889999999999999999999999999
Q ss_pred ccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCC-CCCcEEEecCCcccCCChhhHHHHHHH
Q psy16377 845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNNPFSCSCATLQELQTWI 923 (1344)
Q Consensus 845 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~-~~L~~L~l~~Np~~C~C~~l~~l~~w~ 923 (1344)
|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+++.+.+..+..+ ++|++|+|++|||.|+|+ +.||.+|+
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~-~~~~~~~l 273 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWI 273 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG-GHHHHHHH
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC-hHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888888 599999999999999999 69999999
Q ss_pred hhcCCccCCCCCeeecCCCCCC
Q psy16377 924 IDNSNKVKDGLDISCVIDESSP 945 (1344)
Q Consensus 924 ~~~~~~v~~~~~~~C~~~~~~~ 945 (1344)
++....+.+...++|..|....
T Consensus 274 ~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 274 KDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp HHTGGGBSCGGGCBEEESGGGT
T ss_pred HhhhhhhccccccccCCchhhC
Confidence 9887777788899999876543
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.94 E-value=8.7e-27 Score=255.23 Aligned_cols=194 Identities=29% Similarity=0.514 Sum_probs=181.6
Q ss_pred CCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821 (1344)
Q Consensus 742 ~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f 821 (1344)
..||..|.|. ...++|++.+++.+|..+|..++.|++++|+|+.++...|.++++|+.|+|++|+|+.+.+.+|
T Consensus 3 ~~CP~~C~C~------~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 76 (220)
T 2v9t_B 3 LHCPAACTCS------NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76 (220)
T ss_dssp CCSCTTSEEE------TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCCEEC------CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh
Confidence 4699999996 2479999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcE
Q psy16377 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRK 901 (1344)
Q Consensus 822 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~ 901 (1344)
.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377 902 VYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP 945 (1344)
Q Consensus 902 L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~ 945 (1344)
|+|++|||.|+|+ +.||..|+..+.. ....+.|..|....
T Consensus 157 L~L~~N~~~c~c~-l~~l~~~l~~~~~---~~~~~~C~~P~~l~ 196 (220)
T 2v9t_B 157 MHLAQNPFICDCH-LKWLADYLHTNPI---ETSGARCTSPRRLA 196 (220)
T ss_dssp EECCSSCEECSGG-GHHHHHHHHHCCC---BCSCCBEEESGGGT
T ss_pred EEeCCCCcCCCCc-cHHHHHHHHhCCC---CccCCCcCCchHHc
Confidence 9999999999999 7999999987643 23668999886543
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.6e-28 Score=301.47 Aligned_cols=352 Identities=19% Similarity=0.180 Sum_probs=260.5
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCc----ChhhhcCCCCccEEEeeCCCCCCCC-hhhhcCCC
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI----APNAFVALSSLRILNISSNHLVSLP-EGLFSSCR 264 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~ 264 (1344)
.++|++|||++|+++..+....+..+++|++|+|++|.+.+. .+..+..+++|++|+|++|.+.... ..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 467899999999987655432367789999999999998853 3567788899999999999887532 23344455
Q ss_pred ----CCcEEEcccCcccccC----hhhhcCCCCCCEEEccCCCCCCCCCCccc-----ccCCCcccEEEccCCCCCccc-
Q psy16377 265 ----DISEIYAQKNSLVELS----RGLFHKLEQLLVLDLSSNHLSSNHIDETT-----FIGLIRLIILNLSNNELTRID- 330 (1344)
Q Consensus 265 ----~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~-----~~~l~~L~~L~Ls~n~l~~~~- 330 (1344)
+|++|++++|.++... +..+..+++|++|++++|.+... .... +...++|+.|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH--HHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 6999999999888532 55678899999999999987541 1111 223567999999999888754
Q ss_pred ---cccccCCCcccEEEecCCCccccchhhhc-----CCCCccEEEccCCccccc----ccccccCCCceeEEEccCCcC
Q psy16377 331 ---AKTFKDLVFLQRLDLRNNSIGYIEDNAFL-----SLYNLHTIYLSENRIHHI----TAHLFNGLYVLSKLTLSNNLL 398 (1344)
Q Consensus 331 ---~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l 398 (1344)
+..+..+++|+.|++++|.+.......+. ..++|+.|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 34556678999999999988654443332 366899999999988764 355566788899999999887
Q ss_pred CCCC-----hhhhcCCCCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccCcchhcC-----CCCCcEEE
Q psy16377 399 VNID-----SKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIENGSFKN-----LQQLTDLR 463 (1344)
Q Consensus 399 ~~~~-----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~ 463 (1344)
.+.. +..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+.+.....+.. .++|+.|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 6543 2223357889999999998885 6777888889999999999887654444432 36888999
Q ss_pred cccCCCCCCC----cccccCCCCccEEEcCCCcCcccccccccC-----CCccceEeccccCCC-----ChhhHhhcCCC
Q psy16377 464 LVDNNIGNLS----SGMLYELPSLEVLNLSKNKIHQIEIGTFEK-----NKRLAAIRLDSNFLT-----DINGVFTYLAQ 529 (1344)
Q Consensus 464 L~~n~l~~l~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~-----~l~~~~~~l~~ 529 (1344)
+++|.++... ...+..+++|++|++++|.+.......+.. +++|+.|++++|.++ .++..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 9988886542 223556788889999888887665443332 568888888888888 46777788888
Q ss_pred CcEEEcCCCCCccc
Q psy16377 530 LLWLNLSENHLVWF 543 (1344)
Q Consensus 530 L~~L~Ls~n~l~~~ 543 (1344)
|+.|++++|++...
T Consensus 400 L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 400 LRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSSCCHH
T ss_pred ccEEECCCCCCCHH
Confidence 88888888887644
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.5e-28 Score=301.78 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred cceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccC----hhhhcCCCCCCEEEcccccCcccCCcccccCC
Q psy16377 44 LITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELP----VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119 (1344)
Q Consensus 44 ~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~----~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p 119 (1344)
+++.|+++++.+.. .-....|..+++|++|+|++|.+.... +.++..+++|++|+|++|.+.. .....+.
T Consensus 4 ~l~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~ 77 (461)
T 1z7x_W 4 DIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVL 77 (461)
T ss_dssp EEEEEEEESCCCCH---HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHH
T ss_pred cceehhhhhcccCc---hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHH
Confidence 46777777776632 011123666777777777777766321 2445666677777776555421 0000111
Q ss_pred CcCCCCC-CCCEEEccCCCCCccC----hhhhcCCCCCCEEECCCCCCC
Q psy16377 120 GSLDGLR-ELQVLNISSSNIKSIS----DDVFCSLANIQTLNLSRNSIR 163 (1344)
Q Consensus 120 ~~~~~l~-~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~Ls~n~l~ 163 (1344)
..+.... +|++|+|++|.++... +..+..+++|++|++++|.+.
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 1111111 5666666666665322 344556666666666666554
No 52
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=241.20 Aligned_cols=124 Identities=29% Similarity=0.543 Sum_probs=112.7
Q ss_pred hHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHHhc
Q psy16377 1038 EEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEAS 1117 (1344)
Q Consensus 1038 ~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~s 1117 (1344)
+.||.+.+.+.||+ +.||++|+++||+.||..+. ++|.++|++|
T Consensus 25 ~~fv~~ll~~~LE~-~~g~~l~~~~rD~~~G~~i~-----------------------------------~~i~~~I~~S 68 (159)
T 1t3g_A 25 ERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYI-----------------------------------EDVARCVDQS 68 (159)
T ss_dssp HHHHHTHHHHHHHH-TSCCCEECHHHHCCCCTTHH-----------------------------------HHHHHHHHTB
T ss_pred HHHHHHHHHHHHcC-CCCeEEEEEcccccCccchH-----------------------------------HHHHHHHHHc
Confidence 55666667778996 68899999999999999999 8999999999
Q ss_pred ccEEEEecccch-hhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcc---cchhhHHHHhhhccEEEeCc-------hh
Q psy16377 1118 RRVILVLTKNFL-QTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEA---ESDIELKPYLKSCMKIRWGE-------KR 1186 (1344)
Q Consensus 1118 rr~i~vls~~f~-~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~---~~~~~l~~~l~~~~~l~w~~-------~~ 1186 (1344)
||+|+|+|++|+ +|+||++|++.|++.+++++..+||+|+++++++. ..+++|+++|+++|||+|++ ++
T Consensus 69 r~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~~~~~~~~~L~~~l~~~t~l~W~~p~~~~~~~~ 148 (159)
T 1t3g_A 69 KRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSK 148 (159)
T ss_dssp SEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSHHHHHHHHHHHHTCSSEEEEECCSGGGGSSSCH
T ss_pred CEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccccccccchHHHHHHHhhCCeEeCCCCcccchHHH
Confidence 999999999998 99999999999999999999999999999999853 22468999999999999976 49
Q ss_pred hHHHhHhhcCC
Q psy16377 1187 FWERLRYAMPT 1197 (1344)
Q Consensus 1187 Fw~~l~~~~p~ 1197 (1344)
||+|||||||+
T Consensus 149 FW~~Lr~amP~ 159 (159)
T 1t3g_A 149 FWKRLQYEMPF 159 (159)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhCCC
Confidence 99999999995
No 53
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=2.2e-27 Score=245.78 Aligned_cols=140 Identities=23% Similarity=0.366 Sum_probs=123.4
Q ss_pred cCCCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeeccccc
Q psy16377 1022 TSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQ 1101 (1344)
Q Consensus 1022 ~~~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~ 1101 (1344)
...+.||.+..+.++|++||...|++.||+++.||++|+++||+.||..+.
T Consensus 31 ~~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~----------------------------- 81 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSIS----------------------------- 81 (178)
T ss_dssp CCSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHH-----------------------------
T ss_pred CCCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHH-----------------------------
Confidence 345677888888899999999999999998778999999999999999999
Q ss_pred CCccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccchh---hHHHHhhhcc
Q psy16377 1102 TEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDI---ELKPYLKSCM 1178 (1344)
Q Consensus 1102 ~~w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~~---~l~~~l~~~~ 1178 (1344)
++|.++|++|||+|+|+|++|++|+||++|++.|++.+++++..+||+|+++++++..+++ +||.+|+.+|
T Consensus 82 ------~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~~~~~Lr~~l~~~t 155 (178)
T 2j67_A 82 ------ENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKA 155 (178)
T ss_dssp ------HHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGGGSCTTCHHHHHHHHTTC
T ss_pred ------HHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCChhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999888877 9999999999
Q ss_pred EEEeCc-----hhhHHHhHhhcC
Q psy16377 1179 KIRWGE-----KRFWERLRYAMP 1196 (1344)
Q Consensus 1179 ~l~w~~-----~~Fw~~l~~~~p 1196 (1344)
||+|++ ++||+||||||.
T Consensus 156 ~l~W~~~~~~~~~FW~~Lr~al~ 178 (178)
T 2j67_A 156 YLEWPKDRRKCGLFWANLRAAIN 178 (178)
T ss_dssp SEECCSSGGGHHHHHHHHHHHHC
T ss_pred EEECCCCcchhHHHHHHHHHHhC
Confidence 999987 699999999984
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.7e-25 Score=255.86 Aligned_cols=222 Identities=20% Similarity=0.327 Sum_probs=192.5
Q ss_pred ccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCC
Q psy16377 571 IKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNK 650 (1344)
Q Consensus 571 l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~ 650 (1344)
+.++++++++++++|.++.++. .++..++.|++++|.+.++.+..|.++++|+.|++++|.|+.+... ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~-- 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GT-- 75 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SC--
T ss_pred ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-------CC--
Confidence 3446678999999999887764 4667899999999999999888999999999999999987753210 00
Q ss_pred CCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccc
Q psy16377 651 TLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALC 730 (1344)
Q Consensus 651 ~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c 730 (1344)
T Consensus 76 -------------------------------------------------------------------------------- 75 (290)
T 1p9a_G 76 -------------------------------------------------------------------------------- 75 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccC
Q psy16377 731 HCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNN 810 (1344)
Q Consensus 731 ~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~ 810 (1344)
...++.|++++|.++.++. .|.++++|+.|++++
T Consensus 76 ---------------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 76 ---------------------------------------------LPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSF 109 (290)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCS
T ss_pred ---------------------------------------------CCcCCEEECCCCcCCcCch-hhccCCCCCEEECCC
Confidence 0235678888888888775 578899999999999
Q ss_pred CcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccc
Q psy16377 811 SQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA 890 (1344)
Q Consensus 811 n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 890 (1344)
|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.++.
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCcc
Q psy16377 891 FDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV 930 (1344)
Q Consensus 891 ~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v 930 (1344)
..+ .+.+|+.|+|++|||.|+|+ +.||..|++++...+
T Consensus 190 ~~~-~~~~L~~l~L~~Np~~C~c~-~~~l~~wl~~~~~~~ 227 (290)
T 1p9a_G 190 GFF-GSHLLPFAFLHGNPWLCNCE-ILYFRRWLQDNAENV 227 (290)
T ss_dssp TTT-TTCCCSEEECCSCCBCCSGG-GHHHHHHHHHTGGGB
T ss_pred hhc-ccccCCeEEeCCCCccCcCc-cHHHHHHHHhCcccc
Confidence 866 56789999999999999998 689999998876544
No 55
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=245.63 Aligned_cols=193 Identities=27% Similarity=0.477 Sum_probs=177.7
Q ss_pred CCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccC-CCcCCCCCCccEEEccCCcccccccch
Q psy16377 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIP-NHVFIGRKNMLSLYVNNSQIEVILNQT 820 (1344)
Q Consensus 742 ~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~-~~~f~~l~~L~~L~l~~n~i~~i~~~~ 820 (1344)
..||..|+|.. ..++|+++.++.+|..+|..++.|+|++|+++.++ ..+|.++++|+.|+|++|+|+.+.+.+
T Consensus 3 ~~CP~~C~C~~------~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 3 LACPEKCRCEG------TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp -CCCTTCEEET------TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCEECC------CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH
Confidence 57999999963 37999999999999999999999999999999994 577999999999999999999999999
Q ss_pred hcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR 900 (1344)
Q Consensus 821 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~ 900 (1344)
|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCC
Q psy16377 901 KVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESS 944 (1344)
Q Consensus 901 ~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~ 944 (1344)
.|+|++|||.|+|+ +.||..|++.... ......|..|...
T Consensus 157 ~L~L~~N~l~c~c~-l~~l~~~~~~~~~---~~~~~~C~~P~~l 196 (220)
T 2v70_A 157 TLNLLANPFNCNCY-LAWLGEWLRKKRI---VTGNPRCQKPYFL 196 (220)
T ss_dssp EEECCSCCEECSGG-GHHHHHHHHHSCC---BCCCCEEEESGGG
T ss_pred EEEecCcCCcCCCc-hHHHHHHHHhcCc---cccCCccCCChHH
Confidence 99999999999999 7999999976533 2356789888643
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.6e-25 Score=269.59 Aligned_cols=260 Identities=25% Similarity=0.383 Sum_probs=223.5
Q ss_pred CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377 2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC 81 (1344)
Q Consensus 2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~ 81 (1344)
..||..|.|... +..|.|..+.+..+| ..+. .+++.|+|++|.+ ..+++..|.++++|++|+|++|
T Consensus 33 ~~Cp~~C~C~~~-----~~~v~c~~~~l~~iP-~~~~----~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n 98 (440)
T 3zyj_A 33 QTCPSVCSCSNQ-----FSKVICVRKNLREVP-DGIS----TNTRLLNLHENQI----QIIKVNSFKHLRHLEILQLSRN 98 (440)
T ss_dssp CCCCSSSEECTT-----SCEEECCSCCCSSCC-SCCC----TTCSEEECCSCCC----CEECTTTTSSCSSCCEEECCSS
T ss_pred ccCCCCCEeCCC-----CCEEEeCCCCcCcCC-CCCC----CCCcEEEccCCcC----CeeCHHHhhCCCCCCEEECCCC
Confidence 468999998521 236899999999998 4443 5789999999998 4567789999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC-
Q psy16377 82 KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN- 160 (1344)
Q Consensus 82 ~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n- 160 (1344)
++..+++.+|.++++|++|+|++|.+. .+.+..|..+++|++|+|++|.++.++...|.++++|++|+|++|
T Consensus 99 ~i~~i~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 99 HIRTIEIGAFNGLANLNTLELFDNRLT-------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp CCCEECGGGGTTCSSCCEEECCSSCCS-------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred cCCccChhhccCCccCCEEECCCCcCC-------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence 999999999999999999999877654 244557999999999999999999999989999999999999984
Q ss_pred CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCC
Q psy16377 161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240 (1344)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 240 (1344)
.+..++...| .++++|++|+|++|+++.++. +..+++|+.|+|++|.++++.+..|.+++
T Consensus 172 ~l~~i~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 172 RLSYISEGAF-----------------EGLSNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp TCCEECTTTT-----------------TTCSSCCEEECTTSCCSSCCC---CTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred CcceeCcchh-----------------hcccccCeecCCCCcCccccc---cCCCcccCEEECCCCccCccChhhhccCc
Confidence 4665554333 348899999999999998874 78899999999999999999889999999
Q ss_pred CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302 (1344)
Q Consensus 241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~ 302 (1344)
+|++|+|++|.+..+++..|.++++|+.|+|++|.++.+++..|..+++|+.|+|++|.+..
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999999999888888999999999999999999888888888899999998887653
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.2e-25 Score=249.57 Aligned_cols=234 Identities=22% Similarity=0.404 Sum_probs=203.1
Q ss_pred cccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeE
Q psy16377 576 SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEF 655 (1344)
Q Consensus 576 ~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l 655 (1344)
..+.++++++.++.++. .++.+++.|++++|++.++.+..|.++++|++|++++|.|+.++...+.
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~------------- 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK------------- 82 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS-------------
T ss_pred CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc-------------
Confidence 46778888888887553 5677899999999999988888999999999999999987754321110
Q ss_pred EcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccc
Q psy16377 656 YLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEF 735 (1344)
Q Consensus 656 ~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~ 735 (1344)
T Consensus 83 -------------------------------------------------------------------------------- 82 (270)
T 2o6q_A 83 -------------------------------------------------------------------------------- 82 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc
Q psy16377 736 DACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV 815 (1344)
Q Consensus 736 ~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~ 815 (1344)
. ...++.|+|++|.++.++...|.++++|+.|++++|+++.
T Consensus 83 ----------------------------------~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 83 ----------------------------------E-----LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp ----------------------------------S-----CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred ----------------------------------C-----CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 0 0236788899999999999999999999999999999999
Q ss_pred cccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccC
Q psy16377 816 ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNT 895 (1344)
Q Consensus 816 i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~ 895 (1344)
+.+..|.++++|++|+|++|+++.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..+..
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecCCcccCCChhhHHHHHHHhhcCCc-cCCCCCeeecCCC
Q psy16377 896 NSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK-VKDGLDISCVIDE 942 (1344)
Q Consensus 896 ~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~-v~~~~~~~C~~~~ 942 (1344)
+++|+.|+|++|||.|+|+.+.|+..|+++.... +.+.....|..++
T Consensus 204 l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~ 251 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGG 251 (270)
T ss_dssp CTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSSSC
T ss_pred ccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCCCC
Confidence 9999999999999999998778999998765443 5566778996643
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.7e-25 Score=269.57 Aligned_cols=260 Identities=23% Similarity=0.369 Sum_probs=220.2
Q ss_pred CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377 2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC 81 (1344)
Q Consensus 2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~ 81 (1344)
..||..|.|.. .+..|.|..+.++.+| .++. .+++.|+|++|.+ ..+++..|.++++|++|+|++|
T Consensus 44 ~~Cp~~C~C~~-----~~~~v~c~~~~l~~iP-~~~~----~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n 109 (452)
T 3zyi_A 44 QNCPSVCSCSN-----QFSKVVCTRRGLSEVP-QGIP----SNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRN 109 (452)
T ss_dssp CCCCTTSEECS-----SSCEEECCSSCCSSCC-SCCC----TTCSEEECCSSCC----CEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCEECC-----CCcEEEECCCCcCccC-CCCC----CCccEEECcCCcC----ceECHHHcCCCCCCCEEECCCC
Confidence 46888898842 1236899999999998 4442 5799999999998 4467789999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC-
Q psy16377 82 KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN- 160 (1344)
Q Consensus 82 ~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n- 160 (1344)
++..+++.+|.++++|++|+|++|.+. .+.+..|.++++|++|+|++|.++.++...|.++++|++|++++|
T Consensus 110 ~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 110 SIRQIEVGAFNGLASLNTLELFDNWLT-------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS-------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred ccCCcChhhccCcccCCEEECCCCcCC-------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence 999999899999999999999877654 344566899999999999999999999988999999999999984
Q ss_pred CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCC
Q psy16377 161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240 (1344)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 240 (1344)
.+..++...| .++++|++|+|++|+++.++ .+..+++|+.|+|++|.+.++.+..|.+++
T Consensus 183 ~l~~i~~~~~-----------------~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 183 KLEYISEGAF-----------------EGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp TCCEECTTTT-----------------TTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred CccccChhhc-----------------cCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcccCcccccCcc
Confidence 4665554333 34789999999999999886 378889999999999999999888999999
Q ss_pred CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302 (1344)
Q Consensus 241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~ 302 (1344)
+|++|+|++|.+..+++..|.++++|+.|+|++|.++.+++..|..+++|+.|+|++|.+..
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 99999999999998888888888899999999998888888888888888888888887653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.1e-24 Score=249.07 Aligned_cols=162 Identities=23% Similarity=0.415 Sum_probs=150.8
Q ss_pred CccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecc
Q psy16377 778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ 857 (1344)
Q Consensus 778 ~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 857 (1344)
.++.|++++|.++.+++..|.++++|+.|++++|+++.+.+..|.++++|++|+|++|+++.+++..|.++++|++|+|+
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCee
Q psy16377 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIS 937 (1344)
Q Consensus 858 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~ 937 (1344)
+|+|+.+.+..|..+++|+.|+|++|+++.+++..+..+++|+.|++++|||.|+|+ +.|+..|+++.. .....+.
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~---~~~~~~~ 261 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFR---GSSSEVP 261 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCC---SEECCCB
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHhcc---cccCccc
Confidence 999999999999999999999999999999999889999999999999999999999 689999998764 2346788
Q ss_pred ecCCCC
Q psy16377 938 CVIDES 943 (1344)
Q Consensus 938 C~~~~~ 943 (1344)
|..|..
T Consensus 262 c~~p~~ 267 (285)
T 1ozn_A 262 CSLPQR 267 (285)
T ss_dssp EEESGG
T ss_pred cCCchH
Confidence 988765
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=256.53 Aligned_cols=280 Identities=22% Similarity=0.289 Sum_probs=200.2
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
++.....+++++.++.+|.. +. ++|++|++++|.++++.+..|.++++|++|++++|.++.+++..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~--~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSG--LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTT--CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccc--cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34556689999999999874 33 589999999999999877789999999999999999999888888999999999
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCc-ccccCCCcccEEEccCC-CCCccccccccCCCcccEEEecC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE-TTFIGLIRLIILNLSNN-ELTRIDAKTFKDLVFLQRLDLRN 347 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 347 (1344)
++++|.++.+++..|.++++|++|++++|.++. +.. ..+..+++|+.|++++| .+..+.+..|..+++|+.|++++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999999998888899999999999998875 444 46777888888888887 46666666677777777777777
Q ss_pred CCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch
Q psy16377 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS 427 (1344)
Q Consensus 348 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 427 (1344)
|.+..+.+..|..+++|+.|++++|.+.......+..+++|+.|++++|.+.+.....+..
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------- 244 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------- 244 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------------
Confidence 7777666666677777777777777766555555555666666666666666544322211
Q ss_pred hhcCCCCccEEEccCCCCCcc----CcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377 428 ALSELPFLKTLDLGENQISKI----ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 428 ~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
......++.++++++.+.+. .+..+..+++|+.|++++|.++.++...|..+++|++|++++|++..
T Consensus 245 -~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 245 -GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 12234445555555544431 23345556666666666666666666556666777777777776554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=2.6e-25 Score=257.13 Aligned_cols=256 Identities=26% Similarity=0.384 Sum_probs=208.6
Q ss_pred CCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcC
Q psy16377 4 VPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKL 83 (1344)
Q Consensus 4 ~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i 83 (1344)
||+.|.|.. ..+.|....++.+| ..+ + .++++|++++|.+ ..+++..|.++++|++|+|++|.+
T Consensus 1 CP~~C~C~~-------~~l~c~~~~l~~ip-~~~---~-~~l~~L~L~~n~l----~~i~~~~~~~l~~L~~L~L~~n~l 64 (306)
T 2z66_A 1 CPSRCSCSG-------TEIRCNSKGLTSVP-TGI---P-SSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGL 64 (306)
T ss_dssp CCTTCEEET-------TEEECCSSCCSSCC-SCC---C-TTCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CcCCCeeCC-------CEEEcCCCCcccCC-CCC---C-CCCCEEECCCCcc----CccCHhHhhccccCCEEECCCCcc
Confidence 899998842 26899999999998 333 2 5799999999998 467878899999999999999999
Q ss_pred CccC--hhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccCh-hhhcCCCCCCEEECCCC
Q psy16377 84 VELP--VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISD-DVFCSLANIQTLNLSRN 160 (1344)
Q Consensus 84 ~~l~--~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~Ls~n 160 (1344)
..+. +..+.++++|++|+|++|.+. .+|..+.++++|++|++++|.++.++. ..+..+++|++|++++|
T Consensus 65 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~--------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 65 SFKGCCSQSDFGTTSLKYLDLSFNGVI--------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp CEEEEEEHHHHSCSCCCEEECCSCSEE--------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred CcccCcccccccccccCEEECCCCccc--------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 8663 356778999999999766543 356678889999999999999998876 67888999999999999
Q ss_pred CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC--CCCCccCCCCCCCCEEEccCCCCCCcChhhhcC
Q psy16377 161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT--LGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238 (1344)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~--l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 238 (1344)
.+..+....+ .++++|++|++++|.++. ++. .+..+++|+.|++++|.++++.+..|.+
T Consensus 137 ~l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 137 HTRVAFNGIF-----------------NGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp CCEECSTTTT-----------------TTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cCCccchhhc-----------------ccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 8876544333 347889999999998876 443 5888899999999999998888888888
Q ss_pred CCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCC-CCCEEEccCCCCCC
Q psy16377 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE-QLLVLDLSSNHLSS 302 (1344)
Q Consensus 239 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~n~l~~ 302 (1344)
+++|++|++++|.+..++...|..+++|+.|++++|.+...++..+..++ +|+.|++++|.+..
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 89999999999988888887788888888888888888877776667774 78888888888764
No 62
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=1.1e-26 Score=234.81 Aligned_cols=137 Identities=23% Similarity=0.432 Sum_probs=126.7
Q ss_pred CccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCc
Q psy16377 1025 KHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEW 1104 (1344)
Q Consensus 1025 ~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w 1104 (1344)
+.||.+..+.++|+.||...|++.||++++||++|+++||+.||..+.
T Consensus 4 ~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~-------------------------------- 51 (149)
T 1fyx_A 4 IXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWII-------------------------------- 51 (149)
T ss_dssp CCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHH--------------------------------
T ss_pred ccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHH--------------------------------
Confidence 456777777789999999999999997667999999999999999999
Q ss_pred cchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccch---hhHHHHhhhccEEE
Q psy16377 1105 SRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD---IELKPYLKSCMKIR 1181 (1344)
Q Consensus 1105 ~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l~ 1181 (1344)
++|.++|++||++|+|+|++|++|+||++|++.|++++++++..++|+|+++++++..++ ++|+.+|+++|||+
T Consensus 52 ---~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p~~~~~Lr~~l~~~t~l~ 128 (149)
T 1fyx_A 52 ---DNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIMNTKTYLE 128 (149)
T ss_dssp ---HHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSCSSCHHHHHHHHHTCSEE
T ss_pred ---HHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhcChHHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999887654 69999999999999
Q ss_pred eCc-----hhhHHHhHhhcC
Q psy16377 1182 WGE-----KRFWERLRYAMP 1196 (1344)
Q Consensus 1182 w~~-----~~Fw~~l~~~~p 1196 (1344)
|++ ++||++|||||.
T Consensus 129 W~~~~~~~~~FW~~Lr~al~ 148 (149)
T 1fyx_A 129 WPMDEAQREGFWVNLRAAIK 148 (149)
T ss_dssp CCSSGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHhc
Confidence 987 799999999985
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=7.7e-25 Score=250.38 Aligned_cols=237 Identities=22% Similarity=0.368 Sum_probs=194.9
Q ss_pred CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377 3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK 82 (1344)
Q Consensus 3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~ 82 (1344)
.||+.|.|.... .+.+.|..+.+..+| ..+ +.+++.|+++++.+ ..+++..|.++++|++|+|++|.
T Consensus 1 ~CP~~C~C~~~~----~~~~~c~~~~l~~ip-~~~----~~~l~~L~l~~n~i----~~~~~~~~~~~~~L~~L~l~~n~ 67 (285)
T 1ozn_A 1 PCPGACVCYNEP----KVTTSCPQQGLQAVP-VGI----PAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNV 67 (285)
T ss_dssp CCCTTCEEECSS----SCEEECCSSCCSSCC-TTC----CTTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCceECCCC----CeEEEcCcCCcccCC-cCC----CCCceEEEeeCCcC----CccCHHHcccCCCCCEEECCCCc
Confidence 499999996322 247899999999998 332 35799999999998 44677789999999999999999
Q ss_pred CCccChhhhcCCCCCCEEEccccc-CcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC
Q psy16377 83 LVELPVDVFSGLRNLKRLTINTRN-LQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS 161 (1344)
Q Consensus 83 i~~l~~~~f~~l~~L~~L~Ls~n~-~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~ 161 (1344)
+..+++.+|+++++|++|+|++|. +. ...|..|..+++|++|+|++|.++.+++..|.++++|++|++++|.
T Consensus 68 l~~~~~~~~~~l~~L~~L~l~~n~~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 68 LARIDAAAFTGLALLEQLDLSDNAQLR-------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCTTCC-------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeCHhhcCCccCCCEEeCCCCCCcc-------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc
Confidence 999987889999999999998664 32 2347788899999999999999999888888889999999999998
Q ss_pred CCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCC
Q psy16377 162 IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241 (1344)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 241 (1344)
++.++...+ .++++|++|++++|+++.++.. .+..+++|+.|++++|.+.+..|..|.++++
T Consensus 141 l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 141 LQALPDDTF-----------------RDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp CCCCCTTTT-----------------TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ccccCHhHh-----------------ccCCCccEEECCCCcccccCHH-HhcCccccCEEECCCCcccccCHhHccCccc
Confidence 887765433 3378888888888888888765 6888888888888888888888888888888
Q ss_pred ccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277 (1344)
Q Consensus 242 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~ 277 (1344)
|++|++++|.+..++...|..+++|+.|++++|.+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888888888888888777788888888888887765
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.7e-24 Score=242.60 Aligned_cols=162 Identities=27% Similarity=0.429 Sum_probs=141.2
Q ss_pred ccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccc-cchhcCCCccceeecccccccccCcccccCccccc----e
Q psy16377 779 ATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL-NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLS----E 853 (1344)
Q Consensus 779 l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~----~ 853 (1344)
++.|++++|.+..++...|.++++|+.|++++|+++.+. +..|.++++|++|+|++|+++.+++..|..+++|+ .
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 556777777777777777888899999999999998875 78899999999999999999999998998888888 8
Q ss_pred eeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCC
Q psy16377 854 LYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933 (1344)
Q Consensus 854 L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~ 933 (1344)
|+|++|.|+.+++..|.. .+|+.|+|++|+|+.+++..+..+++|+.|++++|||.|+|+.+.|+..|++..... ..
T Consensus 182 L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~--~~ 258 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQ 258 (276)
T ss_dssp EECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGG--BC
T ss_pred eecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccc--cC
Confidence 999999999999988875 489999999999999999999999999999999999999998889999999876543 34
Q ss_pred CCeeecCCCC
Q psy16377 934 LDISCVIDES 943 (1344)
Q Consensus 934 ~~~~C~~~~~ 943 (1344)
.+..|..++.
T Consensus 259 ~~~~C~~~~~ 268 (276)
T 2z62_A 259 GSAKCSGSGK 268 (276)
T ss_dssp SCCBBTTTCC
T ss_pred CCceeeCCCC
Confidence 5678977653
No 65
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=7.1e-24 Score=233.69 Aligned_cols=183 Identities=30% Similarity=0.500 Sum_probs=169.6
Q ss_pred cEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccccc
Q psy16377 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838 (1344)
Q Consensus 759 ~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 838 (1344)
..|+|++.++..+|..+|.+++.|+|++|+++.+.+..|.++++|+.|+|++|+|..+.+..|.++++|++|+|++|+|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHH
Q psy16377 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQE 918 (1344)
Q Consensus 839 ~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~ 918 (1344)
.+++..|..+++|++|+|++|+|+.++. .+..+++|++|+|++|+|+.+++..+..+++|+.|+|++|||.|+|..+.+
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 180 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMY 180 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHH
T ss_pred ccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHH
Confidence 9999999999999999999999999864 567899999999999999999999999999999999999999999987899
Q ss_pred HHHHHhhcCCcc--------CCCCCeeecCCC
Q psy16377 919 LQTWIIDNSNKV--------KDGLDISCVIDE 942 (1344)
Q Consensus 919 l~~w~~~~~~~v--------~~~~~~~C~~~~ 942 (1344)
++.|+..+...+ .+...+.|..++
T Consensus 181 l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~~ 212 (229)
T 3e6j_A 181 LRNWVADHTSIAMRWDGKAVNDPDSAKCAGTN 212 (229)
T ss_dssp HHHHHHHCGGGEEEESSSEEECTTCSBBTTTC
T ss_pred HHHHHHhCccccccccCcccCCCCcCccCCCC
Confidence 999998765443 466778887764
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=6.4e-25 Score=278.47 Aligned_cols=328 Identities=15% Similarity=0.138 Sum_probs=190.3
Q ss_pred CCCCCCEEEccCCCCCCc----ChhhhcCCCCccEEEeeCCCCCCCCh----hhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377 214 KFRRLQNLHLENNEISQI----APNAFVALSSLRILNISSNHLVSLPE----GLFSSCRDISEIYAQKNSLVELSRGLFH 285 (1344)
Q Consensus 214 ~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~~L~~L~L~~n~l~~l~~~~~~ 285 (1344)
++++|++|+|++|.+++. .+..+.++++|++|++++|.+..+.. ..+..+++|++|++++|.+..++ ..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence 344555555555544333 12233455666666666666553332 23445677777777777666655 3456
Q ss_pred CCCCCCEEEccCCCCCCC-CCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccch-hhhcCCCC
Q psy16377 286 KLEQLLVLDLSSNHLSSN-HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED-NAFLSLYN 363 (1344)
Q Consensus 286 ~l~~L~~L~Ls~n~l~~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~ 363 (1344)
++++|+.|+++....... ......+..+++|+.|+++++....+ +..+..+++|++|++++|.+..... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 777777777765322100 01133456667788888776543333 4456677788888888887543322 23567788
Q ss_pred ccEEEccCCcccccccccccCCCceeEEEccC-----------CcCCCCChh-hhcCCCCCcEEEccCCCCC-ccchhhc
Q psy16377 364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSN-----------NLLVNIDSK-AFKNCSALKELDLSSNAIV-EIPSALS 430 (1344)
Q Consensus 364 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-~lp~~l~ 430 (1344)
|+.|+++++......+..+..+++|+.|++++ +.++..... .+..+++|++|+++.+.++ ..+..+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 88888873322222333345667788888873 344432222 2345778888888777776 3334444
Q ss_pred C-CCCccEEEcc----CCCCCccC-----cchhcCCCCCcEEEcccCC--CCCCC-cccccCCCCccEEEcCCCcCcccc
Q psy16377 431 E-LPFLKTLDLG----ENQISKIE-----NGSFKNLQQLTDLRLVDNN--IGNLS-SGMLYELPSLEVLNLSKNKIHQIE 497 (1344)
Q Consensus 431 ~-l~~L~~L~Ls----~n~i~~~~-----~~~~~~l~~L~~L~L~~n~--l~~l~-~~~~~~l~~L~~L~Ls~n~i~~~~ 497 (1344)
. +++|+.|+++ .|.+++.+ +..+.++++|+.|+++.|. ++... ......+++|+.|++++|+++...
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 3 7778888885 45565532 2235567778888876433 32211 122234677888888877776533
Q ss_pred c-ccccCCCccceEeccccCCCC--hhhHhhcCCCCcEEEcCCCCCccc
Q psy16377 498 I-GTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLSENHLVWF 543 (1344)
Q Consensus 498 ~-~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l~~~ 543 (1344)
. ..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|+++..
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 2 234566777777777777653 344455677777777777776543
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.7e-24 Score=247.99 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=48.9
Q ss_pred CcccEEECCCCCCCC---CCCCccCCCCCCCCEEEccC-CCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCC
Q psy16377 191 MDLRILDLSHNKLRT---LGDYSGITKFRRLQNLHLEN-NEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDI 266 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~---l~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L 266 (1344)
.+++.|+|++|.+++ ++. .+.++++|++|+|++ |.+.+..|..|+++++|++|++++|.+....+..|..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 345555555555543 222 355555555555552 55554445555555555555555555443222233444444
Q ss_pred cEEEcccCcccccChhhhcCCCCCCEEEccCCCC
Q psy16377 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300 (1344)
Q Consensus 267 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l 300 (1344)
++|++++|.+....+..|..+++|++|++++|.+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 4444444444422222233344444444444333
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.3e-24 Score=248.40 Aligned_cols=249 Identities=22% Similarity=0.291 Sum_probs=224.5
Q ss_pred CCCCEEEccCCCCCC--cChhhhcCCCCccEEEeeC-CCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCE
Q psy16377 216 RRLQNLHLENNEISQ--IAPNAFVALSSLRILNISS-NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292 (1344)
Q Consensus 216 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 292 (1344)
.+++.|+|++|.+.+ ..|..|.++++|++|++++ |.+....+..|..+++|++|++++|.+....+..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 7889999999999999995 8888655566799999999999999999666667799999999
Q ss_pred EEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCC-cccEEEecCCCccccchhhhcCCCCccEEEccC
Q psy16377 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV-FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371 (1344)
Q Consensus 293 L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~ 371 (1344)
|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..++ +|+.|++++|.+....+..|..+. |+.|++++
T Consensus 130 L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCC--cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999986 4467889999999999999999977788888888 999999999999876667788887 99999999
Q ss_pred CcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCc
Q psy16377 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIEN 450 (1344)
Q Consensus 372 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~ 450 (1344)
|.+.+..+..|..+++|+.|++++|.+.+..+. +..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999999999999999999999999999877665 788999999999999998 889999999999999999999998777
Q ss_pred chhcCCCCCcEEEcccCCC
Q psy16377 451 GSFKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 451 ~~~~~l~~L~~L~L~~n~l 469 (1344)
.. ..+++|+.|++++|..
T Consensus 286 ~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSE
T ss_pred CC-ccccccChHHhcCCCC
Confidence 65 7889999999999973
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.4e-22 Score=254.04 Aligned_cols=226 Identities=25% Similarity=0.244 Sum_probs=122.1
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
++|++|+|++|+++.++. .+++|++|+|++|.++++.+ .+++|+.|++++|.++.+|.. +++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~ 147 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELS 147 (622)
T ss_dssp TTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEE
T ss_pred CCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEE
Confidence 445555555555554443 23455555555555554421 344555555555555554432 24555555
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
+++|.++.++. .+++|+.|++++|.++. ++ ..+++|+.|++++|.++.++. ..++|+.|++++|.+
T Consensus 148 Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~--l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l 213 (622)
T 3g06_A 148 VSDNQLASLPA----LPSELCKLWAYNNQLTS--LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRL 213 (622)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred CcCCcCCCcCC----ccCCCCEEECCCCCCCC--Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcc
Confidence 55555554442 23455555555555544 22 234555555555555554432 124566666666666
Q ss_pred cccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhc
Q psy16377 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430 (1344)
Q Consensus 351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 430 (1344)
..++. .+++|+.|++++|.+++++ ..+++|+.|++++|.+..++. .+++|+.|+|++|.++.+|..+.
T Consensus 214 ~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~ 281 (622)
T 3g06_A 214 TSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLI 281 (622)
T ss_dssp SSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGG
T ss_pred cccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHh
Confidence 55543 2355666666666665543 234566666666666665543 34566677777776666666666
Q ss_pred CCCCccEEEccCCCCCccCcchhcC
Q psy16377 431 ELPFLKTLDLGENQISKIENGSFKN 455 (1344)
Q Consensus 431 ~l~~L~~L~Ls~n~i~~~~~~~~~~ 455 (1344)
.+++|+.|+|++|.+++..+..+..
T Consensus 282 ~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp GSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred hccccCEEEecCCCCCCcCHHHHHh
Confidence 6677777777777666655554443
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.3e-23 Score=256.01 Aligned_cols=264 Identities=22% Similarity=0.260 Sum_probs=157.4
Q ss_pred cccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEcc
Q psy16377 315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS 394 (1344)
Q Consensus 315 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 394 (1344)
+++.|++++|.++.++.... ++|+.|++++|.++.++. .+++|+.|+|++|++++++. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 45666666666665543222 456666666666665554 34556666666665554432 34455555555
Q ss_pred CCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCc
Q psy16377 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474 (1344)
Q Consensus 395 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 474 (1344)
+|.+..+.. .+++|+.|++++|.++.+|.. +++|++|++++| .++.++.
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N------------------------~l~~l~~ 158 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN------------------------QLASLPA 158 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS------------------------CCSCCCC
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC------------------------cCCCcCC
Confidence 555554432 234455555555555544432 244445555444 4444432
Q ss_pred ccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccE
Q psy16377 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554 (1344)
Q Consensus 475 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~ 554 (1344)
.+++|+.|++++|.++.++ ..+++|+.|++++|.++.+|.. +++|+.|++++|.++.++. .+++|+.
T Consensus 159 ----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~--~~~~L~~ 225 (622)
T 3g06_A 159 ----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA--LPSGLKE 225 (622)
T ss_dssp ----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC--CCTTCCE
T ss_pred ----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC--CCCCCCE
Confidence 1344555555555554443 2234455555555555554432 3556666666666665442 3466777
Q ss_pred EEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCc
Q psy16377 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT 634 (1344)
Q Consensus 555 L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~ 634 (1344)
|++++|.++.++. .+++|+.|++++|+|+.++. .+.+|+.|+|++|+|..+ |..|.++++|+.|+|++|.++
T Consensus 226 L~Ls~N~L~~lp~-----~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 226 LIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCC
T ss_pred EEccCCccCcCCC-----CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCC
Confidence 7777777777652 34678888888888887765 567899999999988844 677889999999999999998
Q ss_pred ccccccc
Q psy16377 635 KLDLTAL 641 (1344)
Q Consensus 635 ~l~~~~l 641 (1344)
+..+..+
T Consensus 298 ~~~~~~l 304 (622)
T 3g06_A 298 ERTLQAL 304 (622)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 8766544
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=7.4e-25 Score=277.91 Aligned_cols=297 Identities=15% Similarity=0.054 Sum_probs=140.8
Q ss_pred CCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCC---CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCC
Q psy16377 214 KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV---SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL 290 (1344)
Q Consensus 214 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 290 (1344)
++++|+.|++++|.+.++ +..+.++++|++|++++.... ......+..+++|+.|.+.++....++. .+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGC
T ss_pred hCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCC
Confidence 344455555544444442 344444455555555432111 0001122334455555554433333322 23445555
Q ss_pred CEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc-cccccccCCCcccEEEecC-----------CCccccchh-h
Q psy16377 291 LVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRN-----------NSIGYIEDN-A 357 (1344)
Q Consensus 291 ~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~-----------n~l~~i~~~-~ 357 (1344)
++|++++|.++...+ ...+..+++|+.|+++ +.+.. ..+..+..+++|++|++++ +.++..... .
T Consensus 296 ~~L~Ls~~~l~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 296 RKLDLLYALLETEDH-CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CEEEETTCCCCHHHH-HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred cEEecCCCcCCHHHH-HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 555555555432100 1123445555555555 22221 1112223455566666662 333322111 1
Q ss_pred hcCCCCccEEEccCCcccccccccccC-CCceeEEEcc----CCcCCCC-----ChhhhcCCCCCcEEEccCCC--CC-c
Q psy16377 358 FLSLYNLHTIYLSENRIHHITAHLFNG-LYVLSKLTLS----NNLLVNI-----DSKAFKNCSALKELDLSSNA--IV-E 424 (1344)
Q Consensus 358 f~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~-~ 424 (1344)
+..+++|+.|+++.+.+++.....+.. +++|+.|+++ .|.+++. .+..+.++++|+.|++++|. ++ .
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 234566666666666665544444433 5666666664 4445443 12234556777777776543 33 2
Q ss_pred cchhh-cCCCCccEEEccCCCCCccC-cchhcCCCCCcEEEcccCCCCCC-CcccccCCCCccEEEcCCCcCcccccccc
Q psy16377 425 IPSAL-SELPFLKTLDLGENQISKIE-NGSFKNLQQLTDLRLVDNNIGNL-SSGMLYELPSLEVLNLSKNKIHQIEIGTF 501 (1344)
Q Consensus 425 lp~~l-~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 501 (1344)
.+..+ ..+++|++|++++|.+++.. +..+.++++|+.|++++|.++.. ....+..+++|+.|++++|+++......+
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 22222 34667777777777766532 22345667777777777776322 11223456777777777777665533333
Q ss_pred c-CCCccceEeccc
Q psy16377 502 E-KNKRLAAIRLDS 514 (1344)
Q Consensus 502 ~-~l~~L~~L~L~~ 514 (1344)
. .++.+....+..
T Consensus 534 ~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 534 QMARPYWNIELIPS 547 (592)
T ss_dssp GGCCTTEEEEEECC
T ss_pred HHhCCCcEEEEecC
Confidence 2 345454444433
No 72
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=6e-23 Score=242.82 Aligned_cols=211 Identities=27% Similarity=0.505 Sum_probs=177.8
Q ss_pred CCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCC-CCCCccEEEccCCcccccccc
Q psy16377 741 EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFI-GRKNMLSLYVNNSQIEVILNQ 819 (1344)
Q Consensus 741 ~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~-~l~~L~~L~l~~n~i~~i~~~ 819 (1344)
...||..|.|.. .+++|+++++..+|..+|..++.|+|++|+|+.++...|. ++++|+.|+|++|+|+.+.+.
T Consensus 9 ~~~Cp~~C~C~~------~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 82 (361)
T 2xot_A 9 VVSCPANCLCAS------NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82 (361)
T ss_dssp CTTCCTTCEEET------TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCCCCEECC------CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh
Confidence 467999999963 4899999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccccccc---CC
Q psy16377 820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---TN 896 (1344)
Q Consensus 820 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~---~~ 896 (1344)
+|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.++...|. .+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887662 34
Q ss_pred CCC--------------------------cEEEecCCcccCCChhhHH-HHHHHhhcCCccCC-CCCeeecCCCCCCCcc
Q psy16377 897 SML--------------------------RKVYLGNNPFSCSCATLQE-LQTWIIDNSNKVKD-GLDISCVIDESSPPIR 948 (1344)
Q Consensus 897 ~~L--------------------------~~L~l~~Np~~C~C~~l~~-l~~w~~~~~~~v~~-~~~~~C~~~~~~~~~~ 948 (1344)
++| +.|+|++|||.|||+ +.| +..|+.+....+.+ ..++.|..|....
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~-l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~--- 238 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK-LYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLH--- 238 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH-HHHHHHHHHHTTCHHHHTTGGGCEEESSSCCE---
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC-cHHHHHHHHHhcCCchhccCcCCEeCCChHHc---
Confidence 443 457888999999998 566 57898765544444 3679999886432
Q ss_pred ccccCCcccccCc
Q psy16377 949 KEIDLNSTTCTEY 961 (1344)
Q Consensus 949 ~~~~~~~~~C~~~ 961 (1344)
+........|...
T Consensus 239 ~~~~~~~~~C~~~ 251 (361)
T 2xot_A 239 NIFSLDFFNCSEY 251 (361)
T ss_dssp EGGGCCCTTCCSC
T ss_pred CccccccccCCCc
Confidence 2334445568754
No 73
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.89 E-value=7.9e-23 Score=218.62 Aligned_cols=169 Identities=33% Similarity=0.620 Sum_probs=134.0
Q ss_pred CCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821 (1344)
Q Consensus 742 ~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f 821 (1344)
..||..|+|.. .+++|+++++.++|..+|..++.|+|++|+++.++ ..|
T Consensus 2 ~~CP~~C~C~~------~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-------------------------~~~ 50 (193)
T 2wfh_A 2 SRCPTECTCLD------TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-------------------------KEL 50 (193)
T ss_dssp --CCTTCEEET------TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-------------------------GGG
T ss_pred CCCCCCCEeCC------CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-------------------------HHh
Confidence 36999999952 47899999999998877666666555555555443 456
Q ss_pred cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcE
Q psy16377 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRK 901 (1344)
Q Consensus 822 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~ 901 (1344)
.++++|+.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 67777777777777777777777888888888888888888888888888888889999999998888888888899999
Q ss_pred EEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377 902 VYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP 945 (1344)
Q Consensus 902 L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~ 945 (1344)
|+|++|||.|+|+ +.||..|++... .....++|..|....
T Consensus 131 L~L~~N~~~C~c~-l~~l~~~~~~~~---~~~~~~~C~~P~~l~ 170 (193)
T 2wfh_A 131 LAIGANPLYCDCN-MQWLSDWVKSEY---KEPGIARCAGPGEMA 170 (193)
T ss_dssp EECCSSCEECSGG-GHHHHHHHHHSS---CCCSCCBEEESGGGT
T ss_pred EEeCCCCeecCCc-CHHHHHHHHhcc---CCCCCcCcCCchHHC
Confidence 9999999999999 799999997652 344668999886543
No 74
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.5e-22 Score=218.01 Aligned_cols=182 Identities=33% Similarity=0.611 Sum_probs=171.8
Q ss_pred CCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcC
Q psy16377 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823 (1344)
Q Consensus 744 cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~ 823 (1344)
||..|.|. ...++|++.+++.+|..++..++.|++++|+++.++...|.++++|+.|++++|+++.+.+..|.+
T Consensus 1 Cp~~C~C~------~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCS------GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEE------TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEEC------CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence 88999994 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEE
Q psy16377 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVY 903 (1344)
Q Consensus 824 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~ 903 (1344)
+++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+++.+++..+..+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred ecCCcccCCChhhHHHHHHHhhcCCccC
Q psy16377 904 LGNNPFSCSCATLQELQTWIIDNSNKVK 931 (1344)
Q Consensus 904 l~~Np~~C~C~~l~~l~~w~~~~~~~v~ 931 (1344)
+++|+|.|+|..+.++..|..+....+.
T Consensus 155 l~~N~~~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 155 LHDNPWDCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCSCCBCCCTTTTHHHHHHHHHCTTTBB
T ss_pred ecCCCeecCCCCHHHHHHHHHhCCceee
Confidence 9999999999988999999877665554
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-23 Score=244.00 Aligned_cols=261 Identities=21% Similarity=0.203 Sum_probs=201.8
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
..++.++++.+.+...+.. .+..+++|++|+|++|.++++.+..|.++++|++|+|++|.+..+++ |..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHH-HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHH-HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence 4567778888877655443 45667889999999999999888889999999999999998887665 78889999999
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
+++|.++.++. .++|+.|++++|.+++ +. ...+++|+.|++++|.++.+.+..+..+++|+.|++++|.+
T Consensus 87 Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~--~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 87 LNNNYVQELLV-----GPSIETLHAANNNISR--VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp CCSSEEEEEEE-----CTTCCEEECCSSCCSE--EE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred CcCCccccccC-----CCCcCEEECCCCccCC--cC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 99998887763 3789999999988875 22 23467788888988888888877888888888888888888
Q ss_pred cccchhhh-cCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377 351 GYIEDNAF-LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429 (1344)
Q Consensus 351 ~~i~~~~f-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l 429 (1344)
..+....+ ..+++|+.|++++|.+.+.... ..+++|+.|++++|.+.++.+. |..+++|+.|++++|.+..+|..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHh
Confidence 87766555 3678888888888888776432 3467788888888887777554 677778888888888887777777
Q ss_pred cCCCCccEEEccCCCCC-ccCcchhcCCCCCcEEEcccC
Q psy16377 430 SELPFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLVDN 467 (1344)
Q Consensus 430 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n 467 (1344)
..+++|+.|++++|.+. +..+..+..++.|+.|++.++
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 77778888888888777 555556666666776666643
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=3.7e-23 Score=240.16 Aligned_cols=259 Identities=23% Similarity=0.254 Sum_probs=167.8
Q ss_pred ccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEc
Q psy16377 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNL 321 (1344)
Q Consensus 242 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~L 321 (1344)
++.++++.+.+...+...+..+++|++|++++|.+..+++..|..+++|+.|++++|.+++ . ..+..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~--~~~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--T--LDLESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--E--EEETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--c--hhhhhcCCCCEEEC
Confidence 3344444444444444455555556666666666655555555666666666666666543 1 12555666666666
Q ss_pred cCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCC
Q psy16377 322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401 (1344)
Q Consensus 322 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 401 (1344)
++|.++++. ..++|+.|++++|.+..++.. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 666655443 225677777777776665543 346677777777777777766677777777777777777776
Q ss_pred Chhhh-cCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCC
Q psy16377 402 DSKAF-KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480 (1344)
Q Consensus 402 ~~~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 480 (1344)
.+..+ ..+++|+.|++++|.++.++.. ..+++|++|++++|.++++.+. |..+++|+.|++++|.++.++.. +..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcC
Confidence 65555 3577788888888887776543 3477788888888887777654 67777788888888877777654 6677
Q ss_pred CCccEEEcCCCcCc-ccccccccCCCccceEecccc
Q psy16377 481 PSLEVLNLSKNKIH-QIEIGTFEKNKRLAAIRLDSN 515 (1344)
Q Consensus 481 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n 515 (1344)
++|+.|++++|++. ...+..+..+++|+.|++.++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 77888888887776 444455666666666666543
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.9e-22 Score=224.31 Aligned_cols=184 Identities=33% Similarity=0.562 Sum_probs=135.9
Q ss_pred CCCC--CeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377 744 CPKN--CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821 (1344)
Q Consensus 744 cp~~--c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f 821 (1344)
||.. |+|.. ....++|++.++..+|..+|.+++.|+|++|.+..++..+|.++++|+.|+|++|+|+.+.+..|
T Consensus 4 Cp~~~gC~C~~----~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 4 CETVTGCTCNE----GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp CHHHHSSEEEG----GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCCCceEcCC----CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 4544 67742 23468888888888888888777777777777777766666666666666666666555555444
Q ss_pred ------------------------cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCE
Q psy16377 822 ------------------------NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877 (1344)
Q Consensus 822 ------------------------~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 877 (1344)
.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 45555555555555555555555666777777777777777777777888888888
Q ss_pred EEccCCCCcccccccccCCCCCcEEEecCCcccCC-ChhhHHHHHHHhhcCCccCC
Q psy16377 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCS-CATLQELQTWIIDNSNKVKD 932 (1344)
Q Consensus 878 L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~-C~~l~~l~~w~~~~~~~v~~ 932 (1344)
|+|++|+|+.+++..+..+++|+.|+|++|||.|+ |+ +.|+..|++.+...+.+
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~l~~~~~~~~~~~~~ 214 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE-ILYLSQWIRENSNKVKD 214 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT-HHHHHHHHHHSGGGBCC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc-cHHHHHHHHhcccceee
Confidence 88888888888888888889999999999999999 77 79999999887766654
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1.6e-23 Score=265.73 Aligned_cols=205 Identities=15% Similarity=0.069 Sum_probs=97.7
Q ss_pred CCCcccEEEccCCCCCcccc-ccccCCCcccEEEecCCCccccch-hhhcCCCCccEEEccC---------Ccccccccc
Q psy16377 312 GLIRLIILNLSNNELTRIDA-KTFKDLVFLQRLDLRNNSIGYIED-NAFLSLYNLHTIYLSE---------NRIHHITAH 380 (1344)
Q Consensus 312 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~---------n~l~~~~~~ 380 (1344)
.+++|+.|++++|.++.... ..+..+++|+.|++++| +..... .....+++|+.|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 44556666666655443211 12345566666666655 221111 1112355666666522 233322221
Q ss_pred cc-cCCCceeEEEccCCcCCCCChhhhc-CCCCCcEEEcc--C----CCCCccc------hhhcCCCCccEEEccCCCCC
Q psy16377 381 LF-NGLYVLSKLTLSNNLLVNIDSKAFK-NCSALKELDLS--S----NAIVEIP------SALSELPFLKTLDLGENQIS 446 (1344)
Q Consensus 381 ~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~Ls~n~i~ 446 (1344)
.+ .++++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++..| ..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 12 2355566665555555543333332 35666666666 2 3343221 2244556666666655 444
Q ss_pred ccCcchhcC-CCCCcEEEcccCCCCCCCcccc-cCCCCccEEEcCCCcCcccccc-cccCCCccceEeccccCCC
Q psy16377 447 KIENGSFKN-LQQLTDLRLVDNNIGNLSSGML-YELPSLEVLNLSKNKIHQIEIG-TFEKNKRLAAIRLDSNFLT 518 (1344)
Q Consensus 447 ~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~ 518 (1344)
+.....+.. +++|+.|++++|.++......+ ..+++|++|++++|.++..... ....+++|+.|++++|.++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 433333333 5666666666666533222112 4456666666666665433222 2233556666666666553
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=5.2e-24 Score=270.18 Aligned_cols=378 Identities=13% Similarity=0.112 Sum_probs=225.4
Q ss_pred cCCCCCCEEEcccccCcccCCcccccCCCcCC-CCCCCCEEEccCC-CCCcc-ChhhhcCCCCCCEEECCCCCCCCCCCc
Q psy16377 92 SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD-GLRELQVLNISSS-NIKSI-SDDVFCSLANIQTLNLSRNSIRDIDTL 168 (1344)
Q Consensus 92 ~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~-~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 168 (1344)
..+++|++|+|+++.+.. ..+..+. .+++|++|+|++| .++.. ....+.++++|++|+|++|.+++....
T Consensus 102 ~~~~~L~~L~L~~~~~~~-------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTD-------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp HHCTTCCEEEEESCBCCH-------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred HhCCCCCeEEeeCcEEcH-------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence 355666666666544321 1111222 3566777777666 34321 122334567777777777665543322
Q ss_pred chhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCC---ccCCCCCCCCEEEccCC-CCCCcChhhhcCCCCccE
Q psy16377 169 GFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDY---SGITKFRRLQNLHLENN-EISQIAPNAFVALSSLRI 244 (1344)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~---~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 244 (1344)
.+... ...+++|+.|++++|. ..+... ..+..+++|++|++++| .+.+ .+..+..+++|++
T Consensus 175 ~l~~~-------------~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 175 WLSHF-------------PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEE 239 (594)
T ss_dssp GGGGS-------------CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSE
T ss_pred HHHHH-------------hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceE
Confidence 22100 1235677777777765 212111 01234577777777776 3333 4566667777777
Q ss_pred EEeeCCC-------CCCCChhhhcCCCCCcEE-EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcc
Q psy16377 245 LNISSNH-------LVSLPEGLFSSCRDISEI-YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRL 316 (1344)
Q Consensus 245 L~Ls~n~-------l~~l~~~~f~~l~~L~~L-~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L 316 (1344)
|+++.+. +..++. .+.++++|+.| .+.+.....++. .+..+++|++|++++|.++... ....+..+++|
T Consensus 240 L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L 316 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKL 316 (594)
T ss_dssp EECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTC
T ss_pred cccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCc
Confidence 7765543 222332 45677778877 343333323332 2346778888888888755311 11224577888
Q ss_pred cEEEccCCCCCccc-cccccCCCcccEEEecC---------CCccccchhhhc-CCCCccEEEccCCccccccccccc-C
Q psy16377 317 IILNLSNNELTRID-AKTFKDLVFLQRLDLRN---------NSIGYIEDNAFL-SLYNLHTIYLSENRIHHITAHLFN-G 384 (1344)
Q Consensus 317 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~---------n~l~~i~~~~f~-~l~~L~~L~Ls~n~l~~~~~~~~~-~ 384 (1344)
+.|++++| +.... ......+++|+.|++.+ +.++......+. .+++|+.|.+..+.+++.....+. .
T Consensus 317 ~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 317 QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 88888877 33221 11223578888888843 334432222232 478899998888888766554443 5
Q ss_pred CCceeEEEcc--C----CcCCCCCh-----hhhcCCCCCcEEEccCCCCC-ccchhhcC-CCCccEEEccCCCCCccCcc
Q psy16377 385 LYVLSKLTLS--N----NLLVNIDS-----KAFKNCSALKELDLSSNAIV-EIPSALSE-LPFLKTLDLGENQISKIENG 451 (1344)
Q Consensus 385 l~~L~~L~Ls--~----n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~Ls~n~i~~~~~~ 451 (1344)
+++|+.|+++ + +.++.... ..+..+++|+.|++++ .++ ..+..+.. +++|+.|++++|.+++....
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 7889999998 3 44553321 2366789999999977 555 33344444 88999999999998776555
Q ss_pred hh-cCCCCCcEEEcccCCCCCCCc-ccccCCCCccEEEcCCCcCccc
Q psy16377 452 SF-KNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 452 ~~-~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
.+ .++++|+.|++++|.++.... .....+++|+.|++++|+++..
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 55 668999999999999844322 2345689999999999988443
No 80
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.87 E-value=1.9e-21 Score=207.98 Aligned_cols=186 Identities=27% Similarity=0.498 Sum_probs=139.8
Q ss_pred CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhc
Q psy16377 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822 (1344)
Q Consensus 743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~ 822 (1344)
.||..|.|.. ..++|+++++.++|..+|..++.|++++|+++.++.. ..|.
T Consensus 1 ~CP~~C~C~~------~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-----------------------~~~~ 51 (192)
T 1w8a_A 1 DCPAMCHCEG------TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-----------------------GLFG 51 (192)
T ss_dssp CCCTTSEEET------TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-----------------------CSGG
T ss_pred CcCCCCEECC------CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc-----------------------cccc
Confidence 4899999963 4788999888888887766666666665555555432 2366
Q ss_pred CCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEE
Q psy16377 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV 902 (1344)
Q Consensus 823 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L 902 (1344)
.+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+.+..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 67777777777777777777777788888888888888888888888888888888888888888888888888999999
Q ss_pred EecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCCCc-cccccCCcccccCc
Q psy16377 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPI-RKEIDLNSTTCTEY 961 (1344)
Q Consensus 903 ~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~~~-~~~~~~~~~~C~~~ 961 (1344)
+|++|||.|+|+ +.||..|++.... ......|..|....+. ...+..+...|.+.
T Consensus 132 ~L~~N~l~c~c~-l~~~~~~l~~~~~---~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 132 NLASNPFNCNCH-LAWFAEWLRKKSL---NGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp ECTTCCBCCSGG-GHHHHHHHHHHCC---SGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred EeCCCCccCcCc-chHHHHHHHHcCC---CCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence 999999999998 7999999987633 2346789988764432 11233444568754
No 81
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.87 E-value=1.8e-23 Score=213.38 Aligned_cols=134 Identities=21% Similarity=0.330 Sum_probs=118.6
Q ss_pred CCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCC
Q psy16377 1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTE 1103 (1344)
Q Consensus 1024 ~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~ 1103 (1344)
.+.||.+..+.++|+.||. .|++.||+++++|++|+++||+.||..+.
T Consensus 14 ~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~------------------------------- 61 (160)
T 2js7_A 14 PERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVW------------------------------- 61 (160)
T ss_dssp TTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCC-------------------------------
T ss_pred CcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHH-------------------------------
Confidence 4567788888899999998 78999998678999999999999999999
Q ss_pred ccchhHHHHHHH-hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccchhhHHHHhhhccEEEe
Q psy16377 1104 WSRSDFLIEAAE-ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRW 1182 (1344)
Q Consensus 1104 w~~~~~i~~~i~-~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w 1182 (1344)
++|.++|+ +||++|+|+|++|++|+||++|++.|++.+++++..+||+|+++++++ ++..+++..+|++|
T Consensus 62 ----~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~~-----~lp~ll~~~~~~~~ 132 (160)
T 2js7_A 62 ----SIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKK-----EFPSILRFITVCDY 132 (160)
T ss_dssp ----CCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCCC-----CCCTTTSCSSCEET
T ss_pred ----HHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccch-----hhHHHHhceEEEEC
Confidence 88999998 799999999999999999999999999998888888999999998853 23345677789999
Q ss_pred C----chhhHHHhHhhcCCC
Q psy16377 1183 G----EKRFWERLRYAMPTC 1198 (1344)
Q Consensus 1183 ~----~~~Fw~~l~~~~p~~ 1198 (1344)
. +++||+|||+|||.+
T Consensus 133 ~~~~~~~~FW~kL~~al~~~ 152 (160)
T 2js7_A 133 TNPCTKSWFWTRLAKALSLP 152 (160)
T ss_dssp TCTTTCSSHHHHHHHHHHSC
T ss_pred CCCCCChHHHHHHHHHcCCc
Confidence 4 579999999999985
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.8e-21 Score=212.74 Aligned_cols=226 Identities=23% Similarity=0.368 Sum_probs=150.6
Q ss_pred CCCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeC
Q psy16377 1 MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN 80 (1344)
Q Consensus 1 ~~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~ 80 (1344)
++.||+.|.|... ....|.|.. +..+| . + + ..++.|++++|.+ ..+++..|.++++|++|+|++
T Consensus 1 ~~~cp~~C~C~~~----~~~~v~c~~--l~~ip-~-~---~-~~l~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~ 64 (239)
T 2xwt_C 1 MGCSSPPCECHQE----EDFRVTCKD--IQRIP-S-L---P-PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSI 64 (239)
T ss_dssp --CCSSSCSEEEC----STTEEEECS--CSSCC-C-C---C-TTCCEEEEESCCC----SEECTTTTTTCTTCCEEEEEC
T ss_pred CCCCCCCCeeCCC----CcceeEccC--ccccC-C-C---C-CcccEEEEeCCcc----eEECHHHccCCCCCcEEeCCC
Confidence 4679999999631 123688976 77776 2 2 2 4789999999998 457777899999999999999
Q ss_pred Cc-CCccChhhhcCCCCCCEEEccc-ccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCC---EE
Q psy16377 81 CK-LVELPVDVFSGLRNLKRLTINT-RNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQ---TL 155 (1344)
Q Consensus 81 ~~-i~~l~~~~f~~l~~L~~L~Ls~-n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~---~L 155 (1344)
|+ ++.+++.+|.++++|++|++++ |.+. .+.+..|.++++|++|++++|.++.+|. |..+++|+ +|
T Consensus 65 n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-------~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L 135 (239)
T 2xwt_C 65 DVTLQQLESHSFYNLSKVTHIEIRNTRNLT-------YIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFIL 135 (239)
T ss_dssp CSSCCEECTTTEESCTTCCEEEEEEETTCC-------EECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEE
T ss_pred CCCcceeCHhHcCCCcCCcEEECCCCCCee-------EcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEE
Confidence 97 8999888888888888888875 5543 2345667788888888888888877765 66666666 67
Q ss_pred ECCCC-CCCCCCCcchhhhccccccCCCCccccCCCCccc-EEECCCCCCCCCCCCccCCCCCCCCEEEccCCC-CCCcC
Q psy16377 156 NLSRN-SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLR-ILDLSHNKLRTLGDYSGITKFRRLQNLHLENNE-ISQIA 232 (1344)
Q Consensus 156 ~Ls~n-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~-i~~~~ 232 (1344)
++++| .++.++...| .++++|+ .|++++|+++.++.. .+.. ++|+.|++++|. ++++.
T Consensus 136 ~l~~N~~l~~i~~~~~-----------------~~l~~L~~~L~l~~n~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAF-----------------QGLCNETLTLKLYNNGFTSVQGY-AFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp EEESCTTCCEECTTTT-----------------TTTBSSEEEEECCSCCCCEECTT-TTTT-CEEEEEECTTCTTCCEEC
T ss_pred ECCCCcchhhcCcccc-----------------cchhcceeEEEcCCCCCcccCHh-hcCC-CCCCEEEcCCCCCcccCC
Confidence 77666 6665544333 2255666 666666666655553 3333 556666666663 55555
Q ss_pred hhhhcCC-CCccEEEeeCCCCCCCChhhhcCCCCCcEEEccc
Q psy16377 233 PNAFVAL-SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273 (1344)
Q Consensus 233 ~~~~~~l-~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~ 273 (1344)
+..|.++ ++|++|++++|.++.+|.. .+++|+.|++.+
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred HHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 5555555 5666666666666555543 234455555544
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=7.7e-21 Score=221.43 Aligned_cols=232 Identities=19% Similarity=0.227 Sum_probs=120.7
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
..+++.|+|++|.++.+|. .+.++++|++|+|++|.+. ..|..++++++|++|+|++|.+..+|.. |..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD--QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCS--CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcCh--hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEE
Confidence 3567777777777776665 3566777777777777776 3356666777777777777766666543 3555555555
Q ss_pred EcccCccc-ccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC
Q psy16377 270 YAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348 (1344)
Q Consensus 270 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 348 (1344)
++++|.+. .+|..+ .. .. + ...|.++++|+.|++++|.++.+ +..+..+++|+.|++++|
T Consensus 156 ~L~~n~~~~~~p~~~-~~------~~-----~------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 156 SIRACPELTELPEPL-AS------TD-----A------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNS 216 (328)
T ss_dssp EEEEETTCCCCCSCS-EE------EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESS
T ss_pred ECCCCCCccccChhH-hh------cc-----c------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCC
Confidence 55554322 222111 10 00 0 11233445555555555555433 223444555555555555
Q ss_pred CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccch
Q psy16377 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPS 427 (1344)
Q Consensus 349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~ 427 (1344)
.+..++. .|..+++|+.|++++|.+.+.. +..|..+++|+.|++++|.+. .+|.
T Consensus 217 ~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~------------------------p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 217 PLSALGP-AIHHLPKLEELDLRGCTALRNY------------------------PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCCCCCG-GGGGCTTCCEEECTTCTTCCBC------------------------CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCcCch-hhccCCCCCEEECcCCcchhhh------------------------HHHhcCCCCCCEEECCCCCchhhcch
Confidence 5544443 2444444555555444444444 444444455555555554333 4444
Q ss_pred hhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC
Q psy16377 428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 428 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 469 (1344)
.+..+++|++|+|++|.+.+..|..+..+++|+.+++..+.+
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 555555555555555555555555555555555555554433
No 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=8.9e-21 Score=220.89 Aligned_cols=235 Identities=21% Similarity=0.251 Sum_probs=154.8
Q ss_pred CCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEc
Q psy16377 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295 (1344)
Q Consensus 216 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 295 (1344)
.+++.|+|++|.+..+ |..+.++++|++|+|++|.+..+|.. |..+++|++|++++|.+..+|.. |.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHH-HhcCcCCCEEEC
Confidence 4566666666666543 44455566666666666665555432 34455555555555555544432 344455555555
Q ss_pred cCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCccc
Q psy16377 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375 (1344)
Q Consensus 296 s~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~ 375 (1344)
++|.+ .+..+..+.. ..+. ..|.++++|+.|++++|.+.
T Consensus 158 ~~n~~--------------------------~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 158 RACPE--------------------------LTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEETT--------------------------CCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC
T ss_pred CCCCC--------------------------ccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC
Confidence 54433 3322222211 0000 12445566666666666666
Q ss_pred ccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCcchhc
Q psy16377 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFK 454 (1344)
Q Consensus 376 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 454 (1344)
.+ +..+..+++|+.|++++|.+.++.+ .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+.
T Consensus 197 ~l-p~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 197 SL-PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CC-CGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred cc-hHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 33 3446667777777777777776644 5888999999999998776 7788999999999999999999998898999
Q ss_pred CCCCCcEEEcccCCC-CCCCcccccCCCCccEEEcCCCcCcccc
Q psy16377 455 NLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIHQIE 497 (1344)
Q Consensus 455 ~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~n~i~~~~ 497 (1344)
.+++|+.|++++|.+ +.+|. .+.++++|+.+.+..+.+..+.
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGSCC--
T ss_pred cCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHHHHHh
Confidence 999999999999888 66665 5899999999999987655443
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=4.2e-22 Score=230.72 Aligned_cols=248 Identities=19% Similarity=0.119 Sum_probs=108.1
Q ss_pred cCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCccccc-cccccc-------CCCceeEEEccCCcCCCCChhhh
Q psy16377 335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI-TAHLFN-------GLYVLSKLTLSNNLLVNIDSKAF 406 (1344)
Q Consensus 335 ~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~-~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~ 406 (1344)
....+|+.|++++|.+ .++...... |+.|++++|.+... .+..+. ++++|++|++++|.+.+..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3344555556666665 444322211 55555555555321 111111 34455555555555544333332
Q ss_pred --cCCCCCcEEEccCCCCCccchhhcCC-----CCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCC---C-cc
Q psy16377 407 --KNCSALKELDLSSNAIVEIPSALSEL-----PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL---S-SG 475 (1344)
Q Consensus 407 --~~l~~L~~L~Ls~n~l~~lp~~l~~l-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l---~-~~ 475 (1344)
..+++|++|++++|.+..+|..+..+ ++|++|++++|++.++.+..|..+++|+.|++++|.+... + ..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 44455555555555554444433333 4455555555554444444444444444444444443210 1 11
Q ss_pred cccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCcccc---CCCcCCC
Q psy16377 476 MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFD---YAMVPGN 551 (1344)
Q Consensus 476 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~---~~~lp~~ 551 (1344)
.+..+++|++|++++|+++.+.. ++ ..+..+++|+.|++++|++.... ....+++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSG---------------------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHH---------------------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred HhccCCCCCEEECCCCcCcchHH---------------------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 11344444444444444442110 11 12233444444444444444321 1111234
Q ss_pred ccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCc
Q psy16377 552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS 611 (1344)
Q Consensus 552 L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~ 611 (1344)
|+.|++++|.++.++.... ++|+.|++++|++++++...-.++|++|++++|++++
T Consensus 255 L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccChhhhhcc----CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 5555555555554443211 3555555555555555332222455566666665543
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=6.4e-22 Score=229.16 Aligned_cols=250 Identities=18% Similarity=0.147 Sum_probs=130.5
Q ss_pred hcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccc--cChhhh------cCCCCCCEEEccCCCCCCCCCCc
Q psy16377 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE--LSRGLF------HKLEQLLVLDLSSNHLSSNHIDE 307 (1344)
Q Consensus 236 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~--l~~~~~------~~l~~L~~L~Ls~n~l~~~~i~~ 307 (1344)
++..++|+.|++++|.+ .+|..++.. |+.|++++|.+.. ++...+ .++++|++|++++|.+++. .+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--AP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC--CC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch--hH
Confidence 34455666666666666 566554332 6666666666543 232221 1566777777777766542 12
Q ss_pred ccc--cCCCcccEEEccCCCCCccccccccCC-----CcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc--
Q psy16377 308 TTF--IGLIRLIILNLSNNELTRIDAKTFKDL-----VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT-- 378 (1344)
Q Consensus 308 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-- 378 (1344)
..+ ..+++|+.|++++|.++++ +..+..+ ++|++|++++|.+..+++..|..+++|+.|++++|++.+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 222 5666666666666666665 4444444 56666666666666655555556666666666666544321
Q ss_pred cccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc---h-hhcCCCCccEEEccCCCCCccCc-chh
Q psy16377 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP---S-ALSELPFLKTLDLGENQISKIEN-GSF 453 (1344)
Q Consensus 379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp---~-~l~~l~~L~~L~Ls~n~i~~~~~-~~~ 453 (1344)
+..+ .+..+++|++|++++|.+..++ . .+..+++|++|++++|.+.+..+ ..+
T Consensus 192 ~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 192 ISAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp HHHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred HHHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 1111 1133444444444444444222 1 12344555555555555554432 233
Q ss_pred cCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCC
Q psy16377 454 KNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519 (1344)
Q Consensus 454 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 519 (1344)
..+++|+.|++++|.++.++...+ ++|++|++++|++++++ . +..+++|+.|++++|.+++
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCC
Confidence 445555555555555555544322 45555666666555552 2 5555556666666655543
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=7.8e-21 Score=215.38 Aligned_cols=154 Identities=30% Similarity=0.517 Sum_probs=142.8
Q ss_pred CccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecc
Q psy16377 778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ 857 (1344)
Q Consensus 778 ~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 857 (1344)
.++.|++++|.++.++...|.++++|+.|++++|+++.+.+..|.++++|++|+|++|+++.+++..|..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 36778888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccC
Q psy16377 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVK 931 (1344)
Q Consensus 858 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~ 931 (1344)
+|+|+.+++..|..+++|++|+|++|+++.+++..+..+++|+.|++++|||.|+|+.+.++..|.......+.
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBB
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999998999999999999999999999988999888866544443
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.4e-20 Score=210.69 Aligned_cols=223 Identities=22% Similarity=0.320 Sum_probs=162.6
Q ss_pred cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEccc
Q psy16377 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273 (1344)
Q Consensus 194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~ 273 (1344)
..++.++..++.+|.. +. ++|++|++++|.++++.+..|.++++|++|++++|.+..+++..|.++++|++|++++
T Consensus 10 ~~~~c~~~~l~~ip~~--l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 10 ITYQCMELNFYKIPDN--LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TEEECTTSCCSSCCSS--SC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEEecCCCccccCCC--CC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 3566677777777763 32 5788999999998888777888889999999999988888888888888888888888
Q ss_pred CcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccc-cccccCCCcccEEEecCCCccc
Q psy16377 274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID-AKTFKDLVFLQRLDLRNNSIGY 352 (1344)
Q Consensus 274 n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~ 352 (1344)
|.+..+++..|.++++|++|++++|.+.+ +....+..+++|+.|++++|.+..+. +..|..+++|+.|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CccCccChhhhcCCccccEEECCCCCccc--cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 88888887778888888888888888876 44556777888888888888877753 5667777788888888887777
Q ss_pred cchhhhcCCCCcc----EEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC
Q psy16377 353 IEDNAFLSLYNLH----TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423 (1344)
Q Consensus 353 i~~~~f~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 423 (1344)
++...|..+++|+ .|++++|.+.++.+..+.. .+|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 7665665555555 6666666666655544433 25666666666666555555555555555555555544
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.1e-20 Score=209.19 Aligned_cols=202 Identities=30% Similarity=0.486 Sum_probs=144.4
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
..+++.+++++++++.+|.. +. ++|+.|+|++|.+.++.+..|.++++|++|+|++|.++.++...|..+++|++|
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~--~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSN--IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSC--CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCCEEEccCCCCCccCCC--CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 35678999999999998863 33 679999999999998887789999999999999999999988888888888888
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 349 (1344)
++++|.+..+++..|..+++|++|++++|.++. +....|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCe--eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 888888888887777788888888888877765 445556666666666666666666655555556666666666666
Q ss_pred ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCc
Q psy16377 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397 (1344)
Q Consensus 350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 397 (1344)
+..+++..|..+++|+.|++++|.+.++.+..|..+++|+.|++++|.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 555555555555555555555555554444444444444444444443
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.6e-21 Score=236.54 Aligned_cols=235 Identities=23% Similarity=0.225 Sum_probs=156.3
Q ss_pred CCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEc
Q psy16377 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295 (1344)
Q Consensus 216 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 295 (1344)
++|+.|+|++|.++++.|..|.++++|++|+|++|.+..+++ |..+++|++|+|++|.++.+++ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 456666666666666656666666666666666666655444 5666666666666666666553 267777777
Q ss_pred cCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhc-CCCCccEEEccCCcc
Q psy16377 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL-SLYNLHTIYLSENRI 374 (1344)
Q Consensus 296 s~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n~l 374 (1344)
++|.+++ +.. ..+++|+.|++++|.++++.+..|..+++|+.|+|++|.+..+.+..|. .+++|+.|+|++|.+
T Consensus 107 ~~N~l~~--~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNISR--VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCCCC--EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCcCCC--CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777665 222 2356777777777777777777777777777788877777766555554 577777788877777
Q ss_pred cccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCC-ccCcchh
Q psy16377 375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS-KIENGSF 453 (1344)
Q Consensus 375 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~-~~~~~~~ 453 (1344)
.+..+ +..+++|+.|+|++|.++++++. |..+++|+.|++++|.+..+|..+..+++|+.|++++|.+. +..+..+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 76643 23467777777777777776554 66677777777777777777777777777777777777766 3334445
Q ss_pred cCCCCCcEEEcc
Q psy16377 454 KNLQQLTDLRLV 465 (1344)
Q Consensus 454 ~~l~~L~~L~L~ 465 (1344)
..++.|+.|++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 555555555543
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.4e-20 Score=231.41 Aligned_cols=215 Identities=24% Similarity=0.267 Sum_probs=121.1
Q ss_pred CCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEE
Q psy16377 265 DISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLD 344 (1344)
Q Consensus 265 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 344 (1344)
+|++|+|++|.+..+++..|..+++|+.|+|++|.+++ . ..+..+++|+.|+|++|.++++++ .++|+.|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--T--LDLESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--E--EECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--C--cccccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 44444444444444444444444444455554444433 1 114444555555555554443322 14556666
Q ss_pred ecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhc-CCCCCcEEEccCCCCC
Q psy16377 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK-NCSALKELDLSSNAIV 423 (1344)
Q Consensus 345 Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~ 423 (1344)
+++|.+..++.. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 666665555432 245566666666666666666666666666666666666665555554 5666777777777666
Q ss_pred ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCc
Q psy16377 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494 (1344)
Q Consensus 424 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~ 494 (1344)
.+|. ...+++|++|+|++|.++++++. |..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred cccc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence 5543 23466666667666666665553 55666666666666666655543 455566666666666554
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=7.3e-20 Score=209.13 Aligned_cols=203 Identities=23% Similarity=0.306 Sum_probs=157.1
Q ss_pred ccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCc
Q psy16377 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413 (1344)
Q Consensus 334 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 413 (1344)
+.++++++.++++++.++.++... .++++.|++++|.+.++.+..|.++++|+.|++++|.+..+.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344555666666666666555432 24566666666666666666666666666777766666655432 5678888
Q ss_pred EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493 (1344)
Q Consensus 414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i 493 (1344)
.|++++|.+..+|..+..+++|++|++++|+++++.+..|.++++|+.|++++|.++.++.+.|..+++|+.|++++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 88888888888888888888999999999999888888888899999999999999888888888889999999999999
Q ss_pred cccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377 494 HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 494 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
+.++...|..+++|+.|+|++|.++.+|..+..+.+|+.|++++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 888888888888899999999988888877777778888888877653
No 93
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.83 E-value=3.7e-20 Score=195.23 Aligned_cols=167 Identities=34% Similarity=0.626 Sum_probs=129.1
Q ss_pred CCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcC
Q psy16377 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823 (1344)
Q Consensus 744 cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~ 823 (1344)
||..|+|. ...++|++.++..+|..++..++.|++++|+++. +.+..|.+
T Consensus 1 Cp~~C~C~------~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~------------------------~~~~~~~~ 50 (177)
T 2o6r_A 1 CPSRCSCS------GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS------------------------LPHGVFDK 50 (177)
T ss_dssp CCTTCEEE------TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC------------------------CCTTTTTT
T ss_pred CcCCCEeC------CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE------------------------eCHHHhcC
Confidence 89999994 2468888888888887665555555555555544 44455566
Q ss_pred CCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEE
Q psy16377 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVY 903 (1344)
Q Consensus 824 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~ 903 (1344)
+++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 66677777777777777777777788888888888888888888888888899999999999988888888889999999
Q ss_pred ecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCC
Q psy16377 904 LGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942 (1344)
Q Consensus 904 l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~ 942 (1344)
+++|||.|+|+.+.+|..|+.+....+ ...+.|..++
T Consensus 131 l~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~~~ 167 (177)
T 2o6r_A 131 LHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSG 167 (177)
T ss_dssp CCSSCBCCCHHHHHHHHHHHHHTGGGE--ESCCBBTTTC
T ss_pred ecCCCeeccCccHHHHHHHHhhCcccc--ccCcEeCCCC
Confidence 999999999998899999998765433 3678887754
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.9e-20 Score=218.89 Aligned_cols=248 Identities=23% Similarity=0.306 Sum_probs=184.0
Q ss_pred CCCC-CcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377 4 VPEN-CSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK 82 (1344)
Q Consensus 4 ~~~~-c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~ 82 (1344)
||.. |.|.. +.|.|..++|+.+| .++ +.+++.|+|++|.+ .+|++++|.++++|++|+|++|+
T Consensus 2 Cp~~~C~C~~-------~~v~C~~~~Lt~iP-~~l----~~~l~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 2 CHHRICHCSN-------RVFLCQESKVTEIP-SDL----PRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp CCCSSSEEET-------TEEEEESTTCCSCC-TTC----CTTCSEEEEESCCC----SEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCccEeeC-------CEEEecCCCCCccC-cCc----CCCCCEEEccCCcC----CCcCHHHHcCCCCCCEEECcCCC
Confidence 7754 88852 36899999999998 544 25799999999999 56888899999999999999999
Q ss_pred C-CccChhhhcCCCCCCEEEc-ccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCC-
Q psy16377 83 L-VELPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSR- 159 (1344)
Q Consensus 83 i-~~l~~~~f~~l~~L~~L~L-s~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~- 159 (1344)
+ +.++.++|.++++|+.+.+ .+|++. .+.|..|.++++|++|++++|.+..+++..+....++..|++.+
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~-------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRIEKANNLL-------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEEEEETTCC-------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred CCCccChhHhhcchhhhhhhcccCCccc-------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence 8 5588888999999887544 334432 35577889999999999999999988887777777888888855
Q ss_pred CCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccC-CCCCCcChhhhcC
Q psy16377 160 NSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN-NEISQIAPNAFVA 238 (1344)
Q Consensus 160 n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~ 238 (1344)
+.+..++...|.. ....++.|+|++|+++.++.. .....+|+.|++.+ |.++.+.+++|.+
T Consensus 139 ~~i~~l~~~~f~~----------------~~~~l~~L~L~~N~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 139 INIHTIERNSFVG----------------LSFESVILWLNKNGIQEIHNS--AFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp TTCCEECTTSSTT----------------SBSSCEEEECCSSCCCEECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred cccccccccchhh----------------cchhhhhhccccccccCCChh--hccccchhHHhhccCCcccCCCHHHhcc
Confidence 5577666554421 134678888888888888764 33456788888864 6677776667888
Q ss_pred CCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccC-cccccChhhhcCCCCCCEEEccC
Q psy16377 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN-SLVELSRGLFHKLEQLLVLDLSS 297 (1344)
Q Consensus 239 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~ 297 (1344)
+++|++|+|++|+++.+|...|.+ |+.|.+.++ .++.+|. +.++++|+.+++.+
T Consensus 201 l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred CcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 888888888888888888766544 444444333 4556653 46677777777654
No 95
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.82 E-value=4.8e-20 Score=192.74 Aligned_cols=117 Identities=32% Similarity=0.502 Sum_probs=89.8
Q ss_pred cceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecC
Q psy16377 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN 906 (1344)
Q Consensus 827 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~ 906 (1344)
|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 44555555555555555666666777777777777777777777778888888888888888887788888999999999
Q ss_pred CcccCCChhhHHHHHHHhhcCCcc-----CCCCCeeecCCCC
Q psy16377 907 NPFSCSCATLQELQTWIIDNSNKV-----KDGLDISCVIDES 943 (1344)
Q Consensus 907 Np~~C~C~~l~~l~~w~~~~~~~v-----~~~~~~~C~~~~~ 943 (1344)
|||.|+|..+.||..|++++...+ .+...++|..++.
T Consensus 112 N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~~~ 153 (170)
T 3g39_A 112 NPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGTNT 153 (170)
T ss_dssp SCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-CC
T ss_pred CCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCCCc
Confidence 999999987899999999887777 4567899987643
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=7.2e-20 Score=207.41 Aligned_cols=183 Identities=28% Similarity=0.388 Sum_probs=91.4
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
+++|++|++++|.++.++ .+..+++|++|++++|.++++.+..|.++++|++|++++|.+..+++..|..+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 344444444444444432 24444444444444444444444444444555555555555444444444444555555
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 349 (1344)
++++|.++.+++..|..+++|+.|++++|.+++ +....+..+++|+.|++++|.+.++.+..|..+++|+.|++++|.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 555554444444444455555555555555543 333344455555555555555555555555555556666665554
Q ss_pred ccccchhhhcCCCCccEEEccCCcccccccccccC
Q psy16377 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG 384 (1344)
Q Consensus 350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~ 384 (1344)
+. ..+++|+.+++..|.+.+..+..++.
T Consensus 217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp BC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 43 12445566666666666555554443
No 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.81 E-value=1.5e-19 Score=189.56 Aligned_cols=148 Identities=34% Similarity=0.633 Sum_probs=109.8
Q ss_pred CCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccch
Q psy16377 741 EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820 (1344)
Q Consensus 741 ~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~ 820 (1344)
.++||..|+|. ...++|+++++..+|..++.
T Consensus 3 ~~~CP~~C~C~------~~~l~~~~n~l~~iP~~~~~------------------------------------------- 33 (174)
T 2r9u_A 3 SAGCPSQCSCD------QTLVNCQNIRLASVPAGIPT------------------------------------------- 33 (174)
T ss_dssp CCSSCTTSEEC------SSEEECCSSCCSSCCSCCCT-------------------------------------------
T ss_pred CCCCCCCCEEC------CcEEEeCCCCCCccCCCcCC-------------------------------------------
Confidence 46799999993 24677777777776654432
Q ss_pred hcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR 900 (1344)
Q Consensus 821 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~ 900 (1344)
+|++|+|++|+|+.+.+..|.++++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus 34 -----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 34 -----DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp -----TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred -----CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 344455555555555555666666777777777777777777777788888888888888888887788889999
Q ss_pred EEEecCCcccCCChhhHHHHHHHhhcCCccC--------CCCCeeecCCC
Q psy16377 901 KVYLGNNPFSCSCATLQELQTWIIDNSNKVK--------DGLDISCVIDE 942 (1344)
Q Consensus 901 ~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~--------~~~~~~C~~~~ 942 (1344)
.|+|++|||.|+|..+.||..|++.+...+. +...+.|..++
T Consensus 109 ~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 158 (174)
T 2r9u_A 109 HIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGTN 158 (174)
T ss_dssp EEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTTC
T ss_pred EEEeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCCC
Confidence 9999999999999878999999988766664 55667787653
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.5e-19 Score=200.66 Aligned_cols=196 Identities=23% Similarity=0.320 Sum_probs=131.5
Q ss_pred cccEEEecCCCccccchhhhcCCCCccEEEccCCc-ccccccccccCCCceeEEEccC-CcCCCCChhhhcCCCCCcEEE
Q psy16377 339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR-IHHITAHLFNGLYVLSKLTLSN-NLLVNIDSKAFKNCSALKELD 416 (1344)
Q Consensus 339 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 416 (1344)
+|+.|++++|.++.++...|..+++|+.|++++|+ +..+.+..|.++++|+.|++++ |.+..+.+..|.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666665556666666666666664 5555555566666666666666 666666666666677777777
Q ss_pred ccCCCCCccchhhcCCCCcc---EEEccCC-CCCccCcchhcCCCCCc-EEEcccCCCCCCCcccccCCCCccEEEcCCC
Q psy16377 417 LSSNAIVEIPSALSELPFLK---TLDLGEN-QISKIENGSFKNLQQLT-DLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491 (1344)
Q Consensus 417 Ls~n~l~~lp~~l~~l~~L~---~L~Ls~n-~i~~~~~~~~~~l~~L~-~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n 491 (1344)
+++|.+..+|. +..+++|+ +|++++| .+..+.+..|.++++|+ .|++++|.++.++...|.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 77777776665 66666666 7777777 77777766677777777 7777777777776665655 67777777777
Q ss_pred c-CcccccccccCC-CccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377 492 K-IHQIEIGTFEKN-KRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN 538 (1344)
Q Consensus 492 ~-i~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n 538 (1344)
+ ++.+.+..|..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4 777766667766 6777777777777666543 4566666666554
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.4e-20 Score=222.67 Aligned_cols=251 Identities=20% Similarity=0.279 Sum_probs=124.3
Q ss_pred EEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCc----ccccCCC-cccEEEccCCCCCccccccccCC-----C
Q psy16377 269 IYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE----TTFIGLI-RLIILNLSNNELTRIDAKTFKDL-----V 338 (1344)
Q Consensus 269 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~ 338 (1344)
+.++.|.+....+.++...++|++|+|++|.++. ... ..+..++ +|++|+|++|.++...+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4556666665555555555556666666666654 223 3444555 56666666665555444444332 4
Q ss_pred cccEEEecCCCccccchhh----hcCC-CCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcC-CCCC
Q psy16377 339 FLQRLDLRNNSIGYIEDNA----FLSL-YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN-CSAL 412 (1344)
Q Consensus 339 ~L~~L~Ls~n~l~~i~~~~----f~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L 412 (1344)
+|++|+|++|.++...... +..+ ++|+.|++++|.+.+.....+.. .+.. .++|
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L 140 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASI 140 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCce
Confidence 5555555555554433322 2222 44444444444444433322211 1122 2355
Q ss_pred cEEEccCCCCC-----ccchhhcCCC-CccEEEccCCCCCccCcchh----cCC-CCCcEEEcccCCCCC-----CCccc
Q psy16377 413 KELDLSSNAIV-----EIPSALSELP-FLKTLDLGENQISKIENGSF----KNL-QQLTDLRLVDNNIGN-----LSSGM 476 (1344)
Q Consensus 413 ~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~----~~l-~~L~~L~L~~n~l~~-----l~~~~ 476 (1344)
++|+|++|.++ .++..+..++ +|++|+|++|++++..+..+ ..+ ++|+.|+|++|.++. ++...
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 55555555554 2333444443 56666666665555544322 223 356666666665544 22211
Q ss_pred ccCCCCccEEEcCCCcCccccc----ccccCCCccceEeccccCCCC--------hhhHhhcCCCCcEEEcCCCCCc
Q psy16377 477 LYELPSLEVLNLSKNKIHQIEI----GTFEKNKRLAAIRLDSNFLTD--------INGVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 477 ~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
....++|++|++++|.++.... ..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|++.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 1113466666666666655433 223445666666666666332 2234455666666666666654
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=2.3e-19 Score=212.23 Aligned_cols=255 Identities=18% Similarity=0.236 Sum_probs=149.9
Q ss_pred EEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCCh----hhhcCCC-CCcEEEcccCcccccChhhhcCC-----CC
Q psy16377 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPE----GLFSSCR-DISEIYAQKNSLVELSRGLFHKL-----EQ 289 (1344)
Q Consensus 220 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~-~L~~L~L~~n~l~~l~~~~~~~l-----~~ 289 (1344)
.++++.|.+++..|..+...++|++|+|++|.+...+. ..|..++ +|++|+|++|.++......|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677888888777766666668888888888887776 5666676 77777777777776655544443 66
Q ss_pred CCEEEccCCCCCCCCCCccc----ccCC-CcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC-CCC
Q psy16377 290 LLVLDLSSNHLSSNHIDETT----FIGL-IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LYN 363 (1344)
Q Consensus 290 L~~L~Ls~n~l~~~~i~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~-l~~ 363 (1344)
|++|+|++|.+++ ..... +..+ ++|+.|++++|.++......+.. .+.. .++
T Consensus 82 L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~ 139 (362)
T 3goz_A 82 VTSLNLSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPAS 139 (362)
T ss_dssp CCEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTT
T ss_pred ccEEECcCCcCCh--HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCc
Confidence 6666666666554 22221 2222 44555555554444433322211 1222 235
Q ss_pred ccEEEccCCccccccc----ccccCCC-ceeEEEccCCcCCCCChhh----hcCC-CCCcEEEccCCCCCc-----cchh
Q psy16377 364 LHTIYLSENRIHHITA----HLFNGLY-VLSKLTLSNNLLVNIDSKA----FKNC-SALKELDLSSNAIVE-----IPSA 428 (1344)
Q Consensus 364 L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~-----lp~~ 428 (1344)
|++|++++|.+.+... ..+..++ +|+.|+|++|.+.+..+.. +..+ ++|+.|+|++|.+.. ++..
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 6666666665553222 2223333 6666666666666555433 3334 477777777777765 5555
Q ss_pred hcC-CCCccEEEccCCCCCccCcc----hhcCCCCCcEEEcccCCCCCCCcc-------cccCCCCccEEEcCCCcCccc
Q psy16377 429 LSE-LPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDNNIGNLSSG-------MLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 429 l~~-l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~-------~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
+.. .++|++|+|++|.+.+.... .+..+++|+.|++++|.+..+... .+..+++|+.|++++|++...
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 655 34788888888877776542 234566777777777765444432 244555666666666665544
No 101
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.1e-18 Score=201.25 Aligned_cols=242 Identities=22% Similarity=0.316 Sum_probs=163.3
Q ss_pred EccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCC
Q psy16377 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471 (1344)
Q Consensus 392 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 471 (1344)
.+..+.+.+.. .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.++.+ +..+++|+.|++++|.++.
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence 34444444432 2445678999999999998887 68889999999999999988766 8889999999999999987
Q ss_pred CCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCC
Q psy16377 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN 551 (1344)
Q Consensus 472 l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~ 551 (1344)
++ .+..+++|++|++++|+++.+. .+..+++|+.|++++|.++.++. +..+++|+.|++++|++..++.
T Consensus 100 ~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------ 168 (308)
T 1h6u_A 100 VS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------ 168 (308)
T ss_dssp CG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG------
T ss_pred ch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh------
Confidence 75 3788899999999999888765 37788888889998888888765 7778888888888777765432
Q ss_pred ccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCC
Q psy16377 552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN 631 (1344)
Q Consensus 552 L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N 631 (1344)
+..+++|+.|++++|+++++.+..-.++|+.|++++|++.+..+ +..+++|+.|++++|
T Consensus 169 -------------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 -------------------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp -------------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred -------------------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 22334555555555555554443333455556666665555542 566667777777777
Q ss_pred CCcccccccccccCC------CCCCCCCeEEcCCCcccccccCcc
Q psy16377 632 DITKLDLTALRLKPV------PQNKTLPEFYLGGNPFDCDCSMDW 670 (1344)
Q Consensus 632 ~l~~l~~~~l~~~~~------~~~~~l~~l~l~~Np~~C~c~~~~ 670 (1344)
.++..+......... .....+....++.|...|.+...|
T Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~is~~g~y~~~~~~w 272 (308)
T 1h6u_A 228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272 (308)
T ss_dssp EEECCCEECCSEEEEECCCBCTTSCBCCCSEEGGGCEEETTEEEE
T ss_pred eeecCCeeecccEeccceeECCCCCCCCCCccccCCEEeCCceeE
Confidence 666544322210000 011123334566666666666666
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1e-18 Score=205.64 Aligned_cols=238 Identities=24% Similarity=0.328 Sum_probs=151.2
Q ss_pred cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCC-CCChhhhcCCCCCcE-EEc
Q psy16377 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-SLPEGLFSSCRDISE-IYA 271 (1344)
Q Consensus 194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~-L~L 271 (1344)
++++.++++++.+|.. + .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+. .++..+|.++++|.+ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~--l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD--L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTT--C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcC--c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5788888899998864 4 367899999999999887788999999999999999874 477888888888775 556
Q ss_pred ccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccC-CCCCccccccccCCC-cccEEEecCCC
Q psy16377 272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSN-NELTRIDAKTFKDLV-FLQRLDLRNNS 349 (1344)
Q Consensus 272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~ 349 (1344)
..|++..+++..|..+++|+.|++++|.+.. +....+....++..|++.+ +.+..+....|..+. .++.|++++|.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSS--CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cCCcccccCchhhhhcccccccccccccccc--CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 6688888888888888888888888888765 4444455555566666644 345555444444442 34555555555
Q ss_pred ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC-CcCCCCChhhhcCCCCCcEEEccCCCCCccchh
Q psy16377 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN-NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428 (1344)
Q Consensus 350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 428 (1344)
++.++...| . ..+|+.|++.+ |.+..+.+.+|.++++|+.|++++|+++.+|..
T Consensus 166 i~~i~~~~f------------------------~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 166 IQEIHNSAF------------------------N-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp CCEECTTSS------------------------T-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred ccCCChhhc------------------------c-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 555544433 2 23444555442 444444445555555555555555555555532
Q ss_pred hcCCCCccEEEccCCC-CCccCcchhcCCCCCcEEEccc
Q psy16377 429 LSELPFLKTLDLGENQ-ISKIENGSFKNLQQLTDLRLVD 466 (1344)
Q Consensus 429 l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~ 466 (1344)
.+.+|+.|.+.++. +..++ .+..+++|+.+++.+
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY 255 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred --hhccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence 23344444444332 22222 245566666666543
No 103
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.3e-18 Score=195.61 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=41.1
Q ss_pred CCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCE
Q psy16377 213 TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292 (1344)
Q Consensus 213 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 292 (1344)
..+++|+.|++++|.+..+ + .+..+++|++|++++|.+..++. |..+++|++|++++|.+..++ .+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence 3455566666666655554 2 35555555555555555555444 444444555555444444432 1334444444
Q ss_pred EEccCCCCC
Q psy16377 293 LDLSSNHLS 301 (1344)
Q Consensus 293 L~Ls~n~l~ 301 (1344)
|++++|.++
T Consensus 112 L~l~~n~l~ 120 (308)
T 1h6u_A 112 LDLTSTQIT 120 (308)
T ss_dssp EECTTSCCC
T ss_pred EECCCCCCC
Confidence 444444433
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.1e-17 Score=186.89 Aligned_cols=181 Identities=29% Similarity=0.393 Sum_probs=154.5
Q ss_pred CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270 (1344)
Q Consensus 191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 270 (1344)
...+.++++++.++.+|.. +. ++|+.|+|++|.+.++.+..|.++++|++|+|++|.+..+++..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~--~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG--IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC--CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCC--CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 5678999999999999874 43 6899999999999999888999999999999999999999998899999999999
Q ss_pred cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
+++|.++.+++..|..+++|++|+|++|.+++ +....|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 99999999988888889999999999998886 5566677888888888888888887777777888888888888888
Q ss_pred cccchhhhcCCCCccEEEccCCccccc
Q psy16377 351 GYIEDNAFLSLYNLHTIYLSENRIHHI 377 (1344)
Q Consensus 351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~ 377 (1344)
..+++..|..+++|+.|++++|++...
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 877777777777788888877776543
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=5.9e-19 Score=204.05 Aligned_cols=131 Identities=27% Similarity=0.215 Sum_probs=61.6
Q ss_pred CCcccEEECCCCCCCC---CCCCccCCCCCCCCEEEccCCCCCCcChh---hhcCCCCccEEEeeCCCCCCCChhhhcCC
Q psy16377 190 GMDLRILDLSHNKLRT---LGDYSGITKFRRLQNLHLENNEISQIAPN---AFVALSSLRILNISSNHLVSLPEGLFSSC 263 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~---l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l 263 (1344)
+++|++|+|++|++.+ ++....+..+++|++|+|++|.++.+.+. .+.++++|++|+|++|.+..+.+..+..+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 4455555555554432 22111234455555555555555433111 13445555555555555554421112222
Q ss_pred ---CCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCC
Q psy16377 264 ---RDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327 (1344)
Q Consensus 264 ---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 327 (1344)
++|++|++++|.++.+|..++ ++|+.|+|++|.+++ + ..+..+++|+.|++++|.++
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~--~--~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNR--A--PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCS--C--CCTTSCCCCSCEECSSTTTS
T ss_pred cCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCC--C--chhhhCCCccEEECcCCCCC
Confidence 455555555555555544331 455556666555554 2 12445555666666665554
No 106
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=5.6e-17 Score=194.04 Aligned_cols=315 Identities=21% Similarity=0.263 Sum_probs=172.0
Q ss_pred cCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCC
Q psy16377 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIK 139 (1344)
Q Consensus 60 ~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~ 139 (1344)
.+|+..+|.+|++|+++.|.. .++.|+..+|.+|.+|+.++|..+ ...+...+|.++.+|+.+.+..+ +.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--------l~~I~~~aF~~c~~L~~i~~p~~-l~ 129 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--------VKMIGRCTFSGCYALKSILLPLM-LK 129 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--------CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--------ceEccchhhcccccchhhcccCc-ee
Confidence 457778888888888888864 488888888888888888888422 22344566777777777776643 66
Q ss_pred ccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCC
Q psy16377 140 SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQ 219 (1344)
Q Consensus 140 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~ 219 (1344)
.+...+|.++..+....... +..+...+| .++.+|+.+.+..+ +..++.. .|.++.+|+
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF-----------------~~c~~L~~i~l~~~-~~~I~~~-~F~~c~~L~ 188 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEG--VTVIGDEAF-----------------ATCESLEYVSLPDS-METLHNG-LFSGCGKLK 188 (394)
T ss_dssp EECTTTTTTCCCSEEECCTT--CCEECTTTT-----------------TTCTTCCEEECCTT-CCEECTT-TTTTCTTCC
T ss_pred eecceeeecccccccccCcc--ccccchhhh-----------------cccCCCcEEecCCc-cceeccc-cccCCCCce
Confidence 66666676665433332221 222333333 23566666666543 3445444 566666666
Q ss_pred EEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCC
Q psy16377 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299 (1344)
Q Consensus 220 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~ 299 (1344)
.+.+..+ +..+...+|.++..|+.+.+..+. ..+.... ....+|+.+.+.. .+..+....|..+..|+.+.+..+.
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTT
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCCc
Confidence 6666544 444555566666666666555442 2222222 2334555555543 2344455555556666666555443
Q ss_pred CCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCccccccc
Q psy16377 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA 379 (1344)
Q Consensus 300 l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~ 379 (1344)
.. +....|..+..++.+.+.... +....|..+.+|+.+.+..+ +..++..+|.++.+|+.+.|..+ ++.+..
T Consensus 265 ~~---i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 265 LR---IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp CE---ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred ce---eeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 22 334455555555555544332 23334555555555555433 55555555555555555555422 444444
Q ss_pred ccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEcc
Q psy16377 380 HLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418 (1344)
Q Consensus 380 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 418 (1344)
.+|.++.+|+.+.+..+ +..+...+|.+|++|+.+++.
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 44555555555555433 444444444444444444443
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=8.8e-19 Score=209.31 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=44.2
Q ss_pred cCCCCCCCCEEEccCCCCCCcChh----hhcCCCCccEEEeeCCCCCCC----Chhh------hcCCCCCcEEEcccCcc
Q psy16377 211 GITKFRRLQNLHLENNEISQIAPN----AFVALSSLRILNISSNHLVSL----PEGL------FSSCRDISEIYAQKNSL 276 (1344)
Q Consensus 211 ~l~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~l----~~~~------f~~l~~L~~L~L~~n~l 276 (1344)
.+..+++|+.|+|++|.+....+. .+..+++|++|+|++|.+..+ |..+ |..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 355566666666666666554332 244566666666666544432 2211 23444455555544444
Q ss_pred cc----cChhhhcCCCCCCEEEccCCCC
Q psy16377 277 VE----LSRGLFHKLEQLLVLDLSSNHL 300 (1344)
Q Consensus 277 ~~----l~~~~~~~l~~L~~L~Ls~n~l 300 (1344)
.. ..+..+..+++|++|+|++|.+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 43 1112234444555555554444
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1e-18 Score=208.83 Aligned_cols=136 Identities=25% Similarity=0.329 Sum_probs=72.7
Q ss_pred CCccEEEccCCccccc-cc---ccccCCCceeEEEccCCcCCC-----CChhhhcCCCCCcEEEccCCCC-----Cccch
Q psy16377 362 YNLHTIYLSENRIHHI-TA---HLFNGLYVLSKLTLSNNLLVN-----IDSKAFKNCSALKELDLSSNAI-----VEIPS 427 (1344)
Q Consensus 362 ~~L~~L~Ls~n~l~~~-~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l-----~~lp~ 427 (1344)
++|+.|++++|++... .+ ..+..+++|+.|++++|.+.. +.+..+..+++|+.|+|++|.+ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 5566666666655421 11 234445556666666655542 1222455566666666666666 34555
Q ss_pred hhcCCCCccEEEccCCCCCccC----cchhc--CCCCCcEEEcccCCCCC-----CCcccccCCCCccEEEcCCCcCccc
Q psy16377 428 ALSELPFLKTLDLGENQISKIE----NGSFK--NLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 428 ~l~~l~~L~~L~Ls~n~i~~~~----~~~~~--~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
.+..+++|++|+|++|.+++.. +..+. .+++|+.|+|++|.++. ++...+.++++|+.|++++|+++..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 6666666666666666665542 22332 25556666666666544 4433334455666666666655544
Q ss_pred c
Q psy16377 497 E 497 (1344)
Q Consensus 497 ~ 497 (1344)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 3
No 109
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=1.3e-16 Score=189.90 Aligned_cols=266 Identities=14% Similarity=0.289 Sum_probs=154.7
Q ss_pred ccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhh
Q psy16377 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVF 146 (1344)
Q Consensus 67 f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~ 146 (1344)
+..+..++.+.+.. .++.|+..+|.++ +|+.+.|..+ ...+...+|.++ +|+.++|.. .++.+...+|
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--------i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--------LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--------CCEECTTTTTTC-CCCEEECCT-TCCEECSSTT
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--------ccEECHHhcCCC-CceEEEeCC-CccEehHHHh
Confidence 33456677777654 4667777777775 5777777422 223445566664 577777765 5667777777
Q ss_pred cCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCC
Q psy16377 147 CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226 (1344)
Q Consensus 147 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n 226 (1344)
.+|++|+.++|..|.++.++..+|. +.+|+.+.|..+ ++.++.. +|.++++|+.+++..+
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~------------------~~~L~~l~lp~~-l~~I~~~-aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV------------------YAGIEEVLLPVT-LKEIGSQ-AFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT------------------TCCCSEEECCTT-CCEECTT-TTTTCTTCCCEECCTT
T ss_pred hCcccCCeeecCCCcceEechhhEe------------------ecccCEEEeCCc-hheehhh-HhhCCCCCCEEecCCC
Confidence 7777777777777777766666553 356666777633 6666655 6666777777776653
Q ss_pred CCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc-----ccChhhhcCCCCCCEEEccCCCCC
Q psy16377 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV-----ELSRGLFHKLEQLLVLDLSSNHLS 301 (1344)
Q Consensus 227 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~Ls~n~l~ 301 (1344)
++.+...+|.+ .+|+.+.|. +.++.++..+|.+|++|+.+.+.++.+. .++...|.+|++|+.++|.. .++
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred -ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 55555566666 566666663 3456666666666666666666655443 45555555555555555552 233
Q ss_pred CCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCC-CccEEEccCC
Q psy16377 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY-NLHTIYLSEN 372 (1344)
Q Consensus 302 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~-~L~~L~Ls~n 372 (1344)
. +...+|.+|.+|+.+.|..+ ++.+...+|.++ +|+.+++.+|.+..+....|.+++ ++..|++..+
T Consensus 313 ~--I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 313 I--LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp E--ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred E--EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 2 44445555555555555332 444545555555 555555555555544444444442 3444444443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=193.23 Aligned_cols=203 Identities=17% Similarity=0.124 Sum_probs=97.3
Q ss_pred CCCCCEEEccCCCCCCCCCCcccc--cCCCcccEEEccCCCCCcccc----ccccCCCcccEEEecCCCccccchhhhcC
Q psy16377 287 LEQLLVLDLSSNHLSSNHIDETTF--IGLIRLIILNLSNNELTRIDA----KTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360 (1344)
Q Consensus 287 l~~L~~L~Ls~n~l~~~~i~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~ 360 (1344)
+++|++|++++|.+.+ ..+..+ ..+++|++|++++|.+....+ ..+..+++|+.|++++|.+..++...|..
T Consensus 90 ~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cCceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 3457777777776654 223333 556666666666666554222 22233445555555555554444444444
Q ss_pred CCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCC-hhhhcCCCCCcEEEccCCCCCccchh----hcCCCCc
Q psy16377 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID-SKAFKNCSALKELDLSSNAIVEIPSA----LSELPFL 435 (1344)
Q Consensus 361 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L 435 (1344)
+++|+.|++++|++.+... +. ...+..+++|++|++++|.++.++.. +..+++|
T Consensus 168 l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L 226 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP 226 (310)
T ss_dssp CTTCCEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC
T ss_pred CCCCCEEECCCCCCccchh---------------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC
Confidence 4555555555544332100 00 01123445555555555555544331 3445555
Q ss_pred cEEEccCCCCCccCcchhcCC---CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEec
Q psy16377 436 KTLDLGENQISKIENGSFKNL---QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512 (1344)
Q Consensus 436 ~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 512 (1344)
++|+|++|.+.+..+..+..+ ++|+.|++++|.++.++...+ ++|++|++++|++++++. +..+++|+.|++
T Consensus 227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L 301 (310)
T 4glp_A 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTL 301 (310)
T ss_dssp SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCEEC
T ss_pred CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEEEC
Confidence 555555555555544333333 355555555555555544321 455555555555544321 333444444444
Q ss_pred cccCC
Q psy16377 513 DSNFL 517 (1344)
Q Consensus 513 ~~n~l 517 (1344)
++|.+
T Consensus 302 ~~N~l 306 (310)
T 4glp_A 302 DGNPF 306 (310)
T ss_dssp SSTTT
T ss_pred cCCCC
Confidence 44444
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=7.4e-18 Score=197.23 Aligned_cols=156 Identities=21% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCCcccEEEccCCCCCcc-ccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCC-ccccc-ccccccCCCce
Q psy16377 312 GLIRLIILNLSNNELTRI-DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN-RIHHI-TAHLFNGLYVL 388 (1344)
Q Consensus 312 ~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L 388 (1344)
.+++|+.|++++|.+... .+..+..+++|++|++++|.+.......+..+++|+.|++++| .+++. .+..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 344444444444444332 2233444444444444444444333333444444444444444 33321 22223344444
Q ss_pred eEEEccCC-cCCCC-ChhhhcCCC-CCcEEEccCCC--CC--ccchhhcCCCCccEEEccCCC-CCccCcchhcCCCCCc
Q psy16377 389 SKLTLSNN-LLVNI-DSKAFKNCS-ALKELDLSSNA--IV--EIPSALSELPFLKTLDLGENQ-ISKIENGSFKNLQQLT 460 (1344)
Q Consensus 389 ~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 460 (1344)
+.|++++| .+++. .+..+..++ +|++|++++|. ++ .++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 44444444 33322 123334444 44444444442 21 233344444444444444444 3333333344444444
Q ss_pred EEEcccC
Q psy16377 461 DLRLVDN 467 (1344)
Q Consensus 461 ~L~L~~n 467 (1344)
.|++++|
T Consensus 251 ~L~l~~~ 257 (336)
T 2ast_B 251 HLSLSRC 257 (336)
T ss_dssp EEECTTC
T ss_pred EeeCCCC
Confidence 4444444
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.7e-17 Score=177.07 Aligned_cols=190 Identities=24% Similarity=0.358 Sum_probs=148.9
Q ss_pred CCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcC
Q psy16377 4 VPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKL 83 (1344)
Q Consensus 4 ~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i 83 (1344)
||..|.|. |..+.|....+..+| ..+ ..+++.|++++|.+ ..+++..|.++++|++|+|++|++
T Consensus 1 Cp~~C~C~-------~~~v~c~~~~l~~~p-~~~----~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l 64 (208)
T 2o6s_A 1 CPSRCSCS-------GTTVECYSQGRTSVP-TGI----PAQTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKL 64 (208)
T ss_dssp CCTTCEEE-------TTEEECCSSCCSSCC-SCC----CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CcCCCEEC-------CCEEEecCCCccCCC-CCC----CCCCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCcc
Confidence 78889883 236899999998888 333 24789999999998 457777889999999999999999
Q ss_pred CccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCC
Q psy16377 84 VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIR 163 (1344)
Q Consensus 84 ~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~ 163 (1344)
+.+++..|.++++|++|+|++|.+. ...+..|.++++|++|+|++|.++.+++..|..+++|++|++++|.++
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQ-------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccChhhcCCCCCcCEEECCCCcCC-------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 9998888899999999999876653 234555788889999999999998888887888888888888888888
Q ss_pred CCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCC
Q psy16377 164 DIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241 (1344)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 241 (1344)
.++...+ ..+++|++|++++|.+. +.+++|+.|+++.|.+++..|..++.++.
T Consensus 138 ~~~~~~~-----------------~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 138 SVPDGVF-----------------DRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCCTTTT-----------------TTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred eeCHHHh-----------------ccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7665433 23678888888888543 34567788888888888777777766544
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=8e-18 Score=196.91 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=50.7
Q ss_pred CCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccccc-ChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccE
Q psy16377 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL-SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII 318 (1344)
Q Consensus 240 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~ 318 (1344)
++++.|++++|.+...++.. ..+++|++|++++|.+... .+..+..+++|++|++++|.+++ .....+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCE
Confidence 34444444444444333322 2344444444444443321 22233444444444444444332 11223333444444
Q ss_pred EEccCC-CCCcc-ccccccCCCcccEEEecCC-Ccccc-chhhhcCCC-CccEEEccCC
Q psy16377 319 LNLSNN-ELTRI-DAKTFKDLVFLQRLDLRNN-SIGYI-EDNAFLSLY-NLHTIYLSEN 372 (1344)
Q Consensus 319 L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~i-~~~~f~~l~-~L~~L~Ls~n 372 (1344)
|++++| .++.. .+..+..+++|++|++++| .++.. ....+..++ +|+.|++++|
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 444444 23221 1222334444444444444 44321 112233444 4444444444
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=5.1e-17 Score=201.01 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=123.8
Q ss_pred CCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC
Q psy16377 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490 (1344)
Q Consensus 411 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 490 (1344)
+|+.|++++|.++.+|..+ +++|++|+|++|.++.++ ..+++|+.|++++|.++.++. +.+ +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 7777777777777777655 266777777777777554 335667777777776666654 332 666666666
Q ss_pred CcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCcccc
Q psy16377 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYE 570 (1344)
Q Consensus 491 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~ 570 (1344)
|+++.++. .+++|+.|++++|.++.+|. .+++|+. |+|++|.|+.++.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~----------------------L~Ls~N~L~~lp~--- 177 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEV----------------------LSVRNNQLTFLPE--- 177 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCE----------------------EECCSSCCSCCCC---
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCE----------------------EECCCCCCCCcch---
Confidence 66665443 34555555555555555443 3444444 4555554444443
Q ss_pred ccCCCcccEEECCCCcccccccccccCcc-------cEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccc
Q psy16377 571 IKDGLSIKNLDASHNRILEISELSIPNSV-------EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643 (1344)
Q Consensus 571 l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL-------~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~ 643 (1344)
+. ++|+.|++++|+|+.++. ++.+| +.|+|++|+|+.+ |..+..+++|+.|+|++|.|++..+..+..
T Consensus 178 l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 11 456666666666665544 44455 7777777777754 445556888888888888887765554431
Q ss_pred c-CCCCC-CCCCeEEc-------CCCcccccccCccccc
Q psy16377 644 K-PVPQN-KTLPEFYL-------GGNPFDCDCSMDWLPI 673 (1344)
Q Consensus 644 ~-~~~~~-~~l~~l~l-------~~Np~~C~c~~~~l~~ 673 (1344)
. ..+.. .....+++ ..+| .|+|...|+..
T Consensus 253 l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~ 290 (571)
T 3cvr_A 253 QTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTAWFPE 290 (571)
T ss_dssp HHHSCC---CEEECCC----------C-CSHHHHTTCC-
T ss_pred hhcCccccCCeeEEeeccccccccccc-chhhHHHHhhh
Confidence 1 11100 00011122 2356 89999999965
No 115
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=2.1e-16 Score=189.14 Aligned_cols=325 Identities=18% Similarity=0.311 Sum_probs=244.1
Q ss_pred CCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcE
Q psy16377 189 GGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISE 268 (1344)
Q Consensus 189 ~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~ 268 (1344)
++.+|+.+.|.. .++.++.. +|.+|++|+.++|..+ +..+...+|.++.+|+.+.+..+ +..+...+|.++..+..
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEF-AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeCC-CccCcchh-HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 478899999975 48888877 8999999999999754 77777788889999988877654 67778888888765443
Q ss_pred EEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC
Q psy16377 269 IYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348 (1344)
Q Consensus 269 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 348 (1344)
... ..+..+....|.++++|+.+.+..+... +....|.++.+|+.+.+..+ +..+...+|.++..|+.+.+..+
T Consensus 145 ~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~~~---I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 145 TIP--EGVTVIGDEAFATCESLEYVSLPDSMET---LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp ECC--TTCCEECTTTTTTCTTCCEEECCTTCCE---ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccC--ccccccchhhhcccCCCcEEecCCccce---eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 332 2345566777888899999988765432 56778888888888888765 77777788888888888887765
Q ss_pred CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchh
Q psy16377 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428 (1344)
Q Consensus 349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 428 (1344)
. ..+....| ....|+.+.+.. .+..+....|.++..|+.+.+..+ ...+....|..+..++.+.+....+. ...
T Consensus 219 ~-~~i~~~~~-~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~ 292 (394)
T 4fs7_A 219 L-YYLGDFAL-SKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKT 292 (394)
T ss_dssp C-CEECTTTT-TTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTT
T ss_pred c-eEeehhhc-ccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--ccc
Confidence 3 33444333 456788888754 345566677888888888888765 44566677888888888877665432 235
Q ss_pred hcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccc
Q psy16377 429 LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLA 508 (1344)
Q Consensus 429 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 508 (1344)
+..+.+|+.+.+.++ +..+...+|.+|.+|+.++|.+ .++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 678888999988764 7778888899999999998864 478888888999999999998776 8888888899999999
Q ss_pred eEeccccCCCChhhHhhcCCCCcEE
Q psy16377 509 AIRLDSNFLTDINGVFTYLAQLLWL 533 (1344)
Q Consensus 509 ~L~L~~n~l~~l~~~~~~l~~L~~L 533 (1344)
.+.+..+ ++.+...|.++++|+.+
T Consensus 370 ~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EEEECCC-CEEhhheecCCCCCcEE
Confidence 9988754 44555667778777654
No 116
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=3.7e-16 Score=186.06 Aligned_cols=260 Identities=13% Similarity=0.239 Sum_probs=125.9
Q ss_pred CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC
Q psy16377 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205 (1344)
Q Consensus 126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~ 205 (1344)
..++.+.+.+ .++.|+..+|.++ +|+.+.+..+ ++.++..+|. ..+|+.+.+.. .++.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~------------------~~~L~~i~lp~-~l~~ 170 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFF------------------NSTVQEIVFPS-TLEQ 170 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTT------------------TCCCCEEECCT-TCCE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcC------------------CCCceEEEeCC-CccE
Confidence 4555555553 3555555555554 4666665544 5555554443 12455555553 4555
Q ss_pred CCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH 285 (1344)
Q Consensus 206 l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~ 285 (1344)
++.. +|.+|++|+.++|..|.++.+...+|. +.+|+.+.|..+ +..++..+|.+|++|+.+.+..+ ++.++...|.
T Consensus 171 I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 171 LKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp ECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred ehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence 5544 555555555555555555555544554 355555555532 55555555555555555555542 4455555554
Q ss_pred CCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCC-----ccccccccCCCcccEEEecCCCccccchhhhcC
Q psy16377 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT-----RIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360 (1344)
Q Consensus 286 ~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~ 360 (1344)
+ .+|+.+.+.. .++. +...+|.+|.+|+.+.+.++.+. .+...+|.+|++|+.+.|. +.+..++..+|.+
T Consensus 247 ~-~~L~~i~lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~ 321 (401)
T 4fdw_A 247 E-SGITTVKLPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG 321 (401)
T ss_dssp T-CCCSEEEEET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred c-CCccEEEeCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence 4 4455555532 2222 33444455555555554444332 3444445555555555554 2344444445555
Q ss_pred CCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCC-CCcEEEcc
Q psy16377 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS-ALKELDLS 418 (1344)
Q Consensus 361 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls 418 (1344)
+.+|+.+.|..+ +..+...+|.++ +|+.+++.+|.+..+....|.+++ +++.|.+.
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 555555544322 344444444444 444444444444444333443332 33444433
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.6e-17 Score=191.90 Aligned_cols=218 Identities=20% Similarity=0.231 Sum_probs=121.1
Q ss_pred CCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC----CccccchhhhcCCC
Q psy16377 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN----SIGYIEDNAFLSLY 362 (1344)
Q Consensus 287 l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~i~~~~f~~l~ 362 (1344)
+++|+.|+|.+ .++. +...+|.+|++|+.|++++|.+..+.+.+|.++.++..+.+..+ ....+...+|.++.
T Consensus 100 ~~~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cccc--hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 44444444444 3332 33444444444444444444444444444444444444433331 12233334444444
Q ss_pred Ccc-EEEccCCcccccccccc---cCCCceeEEEccCCcCCCCChhhh-cCCCCCcEEEccCCCCCccch-hhcCCCCcc
Q psy16377 363 NLH-TIYLSENRIHHITAHLF---NGLYVLSKLTLSNNLLVNIDSKAF-KNCSALKELDLSSNAIVEIPS-ALSELPFLK 436 (1344)
Q Consensus 363 ~L~-~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 436 (1344)
.|+ .+.+.... .+....+ -...++..+.+.++ +.......+ ..|++|+.|+|++|.++.+|. +|.++++|+
T Consensus 177 ~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 444 33332221 1111111 12334445554443 111111112 236777777777777777764 567777777
Q ss_pred EEEccCCCCCccCcchhcCCCCCc-EEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEec
Q psy16377 437 TLDLGENQISKIENGSFKNLQQLT-DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512 (1344)
Q Consensus 437 ~L~Ls~n~i~~~~~~~~~~l~~L~-~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 512 (1344)
.|+|.+| +..+...+|.+|.+|+ .+++.+ .++.|+.++|.+|++|+.|++++|.++.+...+|.++++|+.|+.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7777776 7777777788888887 888877 677777777888888888888788888888778888888877753
No 118
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.68 E-value=6.3e-18 Score=169.32 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=90.0
Q ss_pred CCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCC
Q psy16377 1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTE 1103 (1344)
Q Consensus 1024 ~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~ 1103 (1344)
++.||.+..+.++|++|| ..|++.||+..++|++|+++||+.||..+.
T Consensus 8 ~k~YDvFISy~~~D~~~v-~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~------------------------------- 55 (146)
T 3ub2_A 8 SKDYDVCVCHSEEDLVAA-QDLVSYLEGSTASLRCFLQLRDATPGGAIV------------------------------- 55 (146)
T ss_dssp SSSEEEEEECCGGGHHHH-HHHHHHHHC------------------CCC-------------------------------
T ss_pred CCcceEEEeCChhhHHHH-HHHHHHHhCcCCCeEEEEECccccccccHH-------------------------------
Confidence 456788888778999998 589999997557999999999999999999
Q ss_pred ccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccchhhHHHHhhhccEEEeC
Q psy16377 1104 WSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWG 1183 (1344)
Q Consensus 1104 w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~ 1183 (1344)
+.|.++|++|||+|+|+|++|++++||++|++.|++.++... .++|+|+ +++++..+|++ |+..+|+.+.
T Consensus 56 ----~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~-~~vIpv~-~~v~~~~lp~~----Lr~~~~id~~ 125 (146)
T 3ub2_A 56 ----SELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAE-GCTIPLL-SGLSRAAYPPE----LRFMYYVDGR 125 (146)
T ss_dssp ----EEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSS-SEEEEEE-CSCCGGGSCGG----GGGSCCEETT
T ss_pred ----HHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcC-CcEEEEE-cCCChhhCCHH----HhCeeeeecc
Confidence 899999999999999999999999999999999999886543 4888665 56665555555 4566788885
Q ss_pred c-hhhHHHhHhhc
Q psy16377 1184 E-KRFWERLRYAM 1195 (1344)
Q Consensus 1184 ~-~~Fw~~l~~~~ 1195 (1344)
+ ..-+.+++.++
T Consensus 126 ~~d~~f~~l~~~v 138 (146)
T 3ub2_A 126 GPDGGFRQVKEAV 138 (146)
T ss_dssp SGGGGHHHHHHHH
T ss_pred ChHhhHHHHHHHH
Confidence 4 35667776554
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=4.2e-17 Score=190.11 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=113.7
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCC----CCCCCChhhhcCCCC
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN----HLVSLPEGLFSSCRD 265 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----~l~~l~~~~f~~l~~ 265 (1344)
+++|+.|+|+. .++.++.. +|.+|++|+.|++++|.+..+.+.+|.++.++..+.+..+ ....+....|.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~-aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDA-AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTT-TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHH-HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666666 56666555 5666666666666666666665666666555555544432 223344444555555
Q ss_pred Cc-EEEcccCcccccChhhhcC---CCCCCEEEccCCCCCCCCCCcccc-cCCCcccEEEccCCCCCccccccccCCCcc
Q psy16377 266 IS-EIYAQKNSLVELSRGLFHK---LEQLLVLDLSSNHLSSNHIDETTF-IGLIRLIILNLSNNELTRIDAKTFKDLVFL 340 (1344)
Q Consensus 266 L~-~L~L~~n~l~~l~~~~~~~---l~~L~~L~Ls~n~l~~~~i~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 340 (1344)
|+ .+.+... ..++...+.. ..++..+.+.++-.. .....+ ..+++|+.|+|++|.++.++..+|.+|.+|
T Consensus 178 L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~---~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 178 LETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN---ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH---HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH---HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 55 3333321 2222222221 334444444433111 001111 124556666666666666666666666666
Q ss_pred cEEEecCCCccccchhhhcCCCCcc-EEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEE
Q psy16377 341 QRLDLRNNSIGYIEDNAFLSLYNLH-TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416 (1344)
Q Consensus 341 ~~L~Ls~n~l~~i~~~~f~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 416 (1344)
+.|+|.+| +..++..+|.++++|+ .+.+.+ .+..+...+|.++++|+.|++++|.+..+...+|.+|++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666555 5556666666666665 666655 55555555555555566555555555555555555555555554
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.67 E-value=2.1e-16 Score=185.75 Aligned_cols=116 Identities=27% Similarity=0.402 Sum_probs=88.5
Q ss_pred CCccceeeccc-ccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEE
Q psy16377 824 LSSLQVLHLEN-NLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV 902 (1344)
Q Consensus 824 l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L 902 (1344)
+++|+.|+|++ |+|+.+++..|.+|++|+.|+|++|+|+++++..|..+++|+.|+|++|+|+.+++..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34556666664 666666666677777777777777777777777777777777777778888777777776666 9999
Q ss_pred EecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCC
Q psy16377 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942 (1344)
Q Consensus 903 ~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~ 942 (1344)
+|.+|+|.|+|+ +.||..|++.....+ +...+.|..++
T Consensus 109 ~l~~N~~~c~c~-l~~~~~~~~~~~~~l-~~~~~~C~~~~ 146 (347)
T 2ifg_A 109 VLSGNPLHCSCA-LRWLQRWEEEGLGGV-PEQKLQCHGQG 146 (347)
T ss_dssp ECCSSCCCCCGG-GHHHHHHHHTTCSSC-GGGCCCCSSSS
T ss_pred EeeCCCccCCCc-cHHHHHHHHhCcccc-cccCCCCCCCh
Confidence 999999999999 799999998765443 56789998876
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=5.1e-16 Score=192.12 Aligned_cols=189 Identities=23% Similarity=0.289 Sum_probs=96.2
Q ss_pred CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN 320 (1344)
Q Consensus 241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~ 320 (1344)
+|+.|++++|.++++|..++ ++|+.|+|++|.++.+| ..+++|+.|++++|.+++ ++. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC--CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch--hhc--CCCEEE
Confidence 34444444444444443321 33444444444444433 123444444444444443 221 222 444444
Q ss_pred ccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCC
Q psy16377 321 LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400 (1344)
Q Consensus 321 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 400 (1344)
+++|.+++++. .+++|+.|++++|.++.++. .+++|+.|+|++|.+++++. |. ++|+.|+|++|.++.
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence 54444444332 23455555555555554443 34455555555555555333 32 455555555555554
Q ss_pred CChhhhcC-----CCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCC
Q psy16377 401 IDSKAFKN-----CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNL 456 (1344)
Q Consensus 401 ~~~~~~~~-----l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 456 (1344)
++. |.. ...|+.|+|++|.++.+|..+..+++|+.|+|++|.+++..+..|..+
T Consensus 195 lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA--VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC--CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh--HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 433 322 122377888888888777777777888888888887777666655543
No 122
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=8e-16 Score=175.71 Aligned_cols=170 Identities=28% Similarity=0.404 Sum_probs=78.5
Q ss_pred CCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEE
Q psy16377 336 DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415 (1344)
Q Consensus 336 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 415 (1344)
.+++|+.|++++|.+..++. +..+++|+.|++++|.+.++.+ +..+++|+.|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~--------------------- 98 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD--------------------- 98 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC---------------------
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC---------------------
Confidence 34455555555555544432 4444455555555544444333 3444444444444
Q ss_pred EccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377 416 DLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 416 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
+|.+..++. +..+++|++|++++|.+.++ ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.
T Consensus 99 ---~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 99 ---ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp ---SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCC
T ss_pred ---CCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCcccc
Confidence 444444332 44444444444444444443 23444444444444444444431 24444555555555554444
Q ss_pred cccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377 496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 496 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
+.+ +..+++|+.|++++|.+++++. +..+++|+.|++++|++.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred chh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 432 4444455555555555544432 444555555555555443
No 123
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1e-15 Score=174.83 Aligned_cols=172 Identities=29% Similarity=0.411 Sum_probs=95.8
Q ss_pred cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390 (1344)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 390 (1344)
..+++|+.|++++|.+..+. .+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+.++.. +..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence 34455555555555555442 24555556666666665555544 5556666666666666555332 455555556
Q ss_pred EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCC
Q psy16377 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470 (1344)
Q Consensus 391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 470 (1344)
|++++|.+.++ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.++.+ +..+++|+.|++++|.++
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 66655555554 2355556666666666666555 345556666666666666555543 555556666666666555
Q ss_pred CCCcccccCCCCccEEEcCCCcCcc
Q psy16377 471 NLSSGMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 471 ~l~~~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
.++. +..+++|+.|++++|++..
T Consensus 192 ~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred CChh--hccCCCCCEEECcCCcccC
Confidence 5532 4555566666666555544
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.2e-15 Score=160.54 Aligned_cols=113 Identities=24% Similarity=0.402 Sum_probs=98.7
Q ss_pred CccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccc
Q psy16377 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836 (1344)
Q Consensus 757 ~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~ 836 (1344)
+...++.+++.+..+|... |.++++|+.|++++|+++.+.+..|.++++|++|+|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGV---------------------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TCSEEECCSSCCCCCCTTT---------------------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEeCCCcccEeCHHH---------------------hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4557888888888777532 6677899999999999999988889999999999999999
Q ss_pred ccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccc
Q psy16377 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA 890 (1344)
Q Consensus 837 l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 890 (1344)
|+.+++..|..+++|+.|+|++|+|+.+++..|..+++|++|+|++|.++...+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999889999999999999999999999889999999999999999886443
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=179.48 Aligned_cols=177 Identities=26% Similarity=0.338 Sum_probs=137.4
Q ss_pred ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhc-CCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEc
Q psy16377 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV-ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA 271 (1344)
Q Consensus 193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L 271 (1344)
-+.+++++++++.+|.. +. ..++.|+|++|.++++.+..|. ++++|++|+|++|.+..+++..|.++++|++|+|
T Consensus 20 ~~~l~c~~~~l~~iP~~--~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS--LP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSS--CC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCcc--CC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 46899999999998863 32 4689999999999998888787 8999999999999999988888888899999999
Q ss_pred ccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccc---cCCCcccEEEecCC
Q psy16377 272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF---KDLVFLQRLDLRNN 348 (1344)
Q Consensus 272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n 348 (1344)
++|.+..+++..|.++++|+.|+|++|.+.. +....|.++++|+.|+|++|.++.++...| ..+++|+.|+|++|
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccE--ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 9998888888888888888888888888876 556677777788888888887777766655 44667777777777
Q ss_pred CccccchhhhcCCCCc--cEEEccCCccc
Q psy16377 349 SIGYIEDNAFLSLYNL--HTIYLSENRIH 375 (1344)
Q Consensus 349 ~l~~i~~~~f~~l~~L--~~L~Ls~n~l~ 375 (1344)
.+..++...|..++.+ +.|+|++|++.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7776666666655552 55666665543
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.62 E-value=2.1e-14 Score=171.73 Aligned_cols=337 Identities=19% Similarity=0.302 Sum_probs=211.1
Q ss_pred cCCCcccccCCC-CCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCC
Q psy16377 60 SSITTKSFQNIY-SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138 (1344)
Q Consensus 60 ~~l~~~~f~~l~-~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i 138 (1344)
.+|+..+|.+++ .|+.+.|..+ ++.|...+|.+|.+|+.+.+..+. +.....+...+|.++.+|+.+.+..+ +
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~----p~~l~~Ig~~aF~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK----PSCVKKIGRQAFMFCSELTDIPILDS-V 125 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC----CCCCCEECTTTTTTCTTCCBCGGGTT-C
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC----CCeeeEechhhchhcccceeeccCCc-c
Confidence 457888999985 5999999754 889999999999999999996542 11222345677888999998888754 7
Q ss_pred CccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCC
Q psy16377 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRL 218 (1344)
Q Consensus 139 ~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L 218 (1344)
+.+...+|..+.+|+.+.+.. .+..++..+|. ++..|+.+.+..+ ++.+... +|.. .+|
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~-----------------~c~~L~~i~~~~~-~~~I~~~-aF~~-~~l 184 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPE-GVTSVADGMFS-----------------YCYSLHTVTLPDS-VTAIEER-AFTG-TAL 184 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCT-TCCEECTTTTT-----------------TCTTCCEEECCTT-CCEECTT-TTTT-CCC
T ss_pred ceehhhhhhhhcccccccccc-eeeeeccccee-----------------cccccccccccce-eeEeccc-cccc-cce
Confidence 888888899999999999874 35555555543 3677888888654 6666655 5654 568
Q ss_pred CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCC
Q psy16377 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298 (1344)
Q Consensus 219 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n 298 (1344)
+.+.+..+ +..+...+|.++.+|+...........+....|............ +.....+..+.+...
T Consensus 185 ~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ip~~ 252 (394)
T 4gt6_A 185 TQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR-----------YPSQREDPAFKIPNG 252 (394)
T ss_dssp SEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE-----------CCTTCCCSEEECCTT
T ss_pred eEEEECCc-ccccccchhhhccccceecccccccccccceeecccccccccccc-----------cccccccceEEcCCc
Confidence 88887653 444556677778888877776665544443333222111111100 111223333333221
Q ss_pred CCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc
Q psy16377 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378 (1344)
Q Consensus 299 ~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~ 378 (1344)
+.. +...+|.++..|+.+.+..+ +..+...+|.++..|+.+.+. +.+..++..+|.++.+|+.+.|..+ ++.+.
T Consensus 253 -v~~--i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 253 -VAR--IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp -EEE--ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred -ceE--cccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence 111 33455666666666666543 344556666677777777775 3466677777777777777777543 56666
Q ss_pred cccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ 444 (1344)
Q Consensus 379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 444 (1344)
..+|.++.+|+.+.|.. .+..+...+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.
T Consensus 327 ~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC---------
T ss_pred HhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCC
Confidence 66777777777777754 366677777777778887777765422 1345666777777776553
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.62 E-value=9.9e-15 Score=174.49 Aligned_cols=321 Identities=18% Similarity=0.322 Sum_probs=200.4
Q ss_pred CCCCCCCccCCCCC-CCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC---CCCCChhhhcCCCCCcEEEcccCcccc
Q psy16377 203 LRTLGDYSGITKFR-RLQNLHLENNEISQIAPNAFVALSSLRILNISSNH---LVSLPEGLFSSCRDISEIYAQKNSLVE 278 (1344)
Q Consensus 203 l~~l~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~~~~f~~l~~L~~L~L~~n~l~~ 278 (1344)
++.++.. +|.+++ .|+.+.+.. .++.+...+|.++.+|+.+.+..+. ++.++..+|.+|.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~-aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDR-VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTT-TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHh-hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 3455555 677664 477777764 3666777777777788887776653 66677777777777777766543 666
Q ss_pred cChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhh
Q psy16377 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358 (1344)
Q Consensus 279 l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f 358 (1344)
++...|..+.+|+.+.+..+.. . +....|..+..|+.+.+..+ +..+...+|.+ ..|+.+.+..+ +..+...+|
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~~-~--I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af 201 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGVT-S--VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAF 201 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCC-E--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTT
T ss_pred ehhhhhhhhcccccccccceee-e--ecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchh
Confidence 7777777778888887765432 2 55667777777877777653 66666666654 46777777654 556666677
Q ss_pred cCCCCccEEEccCCcccccccccc-------------cCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCcc
Q psy16377 359 LSLYNLHTIYLSENRIHHITAHLF-------------NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425 (1344)
Q Consensus 359 ~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 425 (1344)
..+..++................+ .....+..+.+. +.+..+...+|.+|..|+.+.+..+...--
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~ 280 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVSIG 280 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCEEC
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccceec
Confidence 777777777665544332221111 112233334433 234445566777777777777765443322
Q ss_pred chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCC
Q psy16377 426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNK 505 (1344)
Q Consensus 426 p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 505 (1344)
..+|.+++.|+.+.+. +.+..+...+|.+|.+|+.+.|.++ ++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 3456677777777775 3566677777777777777777643 66677777777777777777543 6677777777777
Q ss_pred ccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377 506 RLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN 538 (1344)
Q Consensus 506 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n 538 (1344)
+|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 358 ~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred CCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence 7777777765321 134455566666655444
No 128
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=2.4e-15 Score=188.25 Aligned_cols=174 Identities=22% Similarity=0.348 Sum_probs=134.7
Q ss_pred CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI 269 (1344)
Q Consensus 190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L 269 (1344)
+.+|+.|++++|.+..++ .+..+++|+.|+|++|.+.++.+ +..+++|+.|+|++|.+..++ .|..+++|+.|
T Consensus 42 L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEE
Confidence 678888888888888875 37788888899998888888754 888888888888888888776 36778888888
Q ss_pred EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377 270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349 (1344)
Q Consensus 270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 349 (1344)
+|++|.+..++. +..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+..+.+ +..+++|+.|+|++|.
T Consensus 115 ~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~--l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 115 SLEHNGISDING--LVHLPQLESLYLGNNKITD--I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp ECTTSCCCCCGG--GGGCTTCSEEECCSSCCCC--C--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EecCCCCCCCcc--ccCCCccCEEECCCCccCC--c--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888887643 5778888888888888775 2 567777888888888888777655 7777788888888877
Q ss_pred ccccchhhhcCCCCccEEEccCCcccccccc
Q psy16377 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAH 380 (1344)
Q Consensus 350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~ 380 (1344)
+..++ .+..+++|+.|+|++|++.+.+..
T Consensus 187 i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 187 ISDLR--ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCBCG--GGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCCCh--HHccCCCCCEEEccCCcCcCCccc
Confidence 77764 366777777777777777655443
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=5.8e-15 Score=161.14 Aligned_cols=152 Identities=28% Similarity=0.439 Sum_probs=121.4
Q ss_pred ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272 (1344)
Q Consensus 193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 272 (1344)
-+.++++++.++.+|.. +. ++|+.|+|++|.+.++.+..|.++++|++|+|++|.+..+++..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~~iP~~--l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN--LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSCCSS--CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcCCCc--cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 36789999999988864 33 688999999999998888788889999999999999888877788888888888888
Q ss_pred cCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350 (1344)
Q Consensus 273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 350 (1344)
+|.++.+++..|..+++|+.|+|++|.+++ +....|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCE--eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888888888877888888888888888776 5556677777777777777777777666666666677777766665
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=8.9e-15 Score=159.66 Aligned_cols=152 Identities=30% Similarity=0.488 Sum_probs=82.8
Q ss_pred cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcCh-hhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP-NAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272 (1344)
Q Consensus 194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 272 (1344)
+.+++++|.++.+|.. + ...++.|+|++|.++++.+ ..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~--~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH--I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSC--C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccC--C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3455555555555432 2 1234555555555555432 234555555555555555555555555555555555555
Q ss_pred cCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCcc
Q psy16377 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351 (1344)
Q Consensus 273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 351 (1344)
+|.+..+++..|..+++|++|+|++|.+++ +.+..|.++++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCC--BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCe--ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555555555555555555555555555554 33445555566666666666666655555666666666666666553
No 131
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=4.8e-15 Score=185.55 Aligned_cols=150 Identities=33% Similarity=0.435 Sum_probs=68.3
Q ss_pred CCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEE
Q psy16377 336 DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415 (1344)
Q Consensus 336 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 415 (1344)
.+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+.++. .+..+++|+.|+|++|.+..+ ..+..+++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence 33333444444333333332 333444444444444433322 233444444444444444433 124444555555
Q ss_pred EccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377 416 DLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 416 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
+|++|.+..+ ..+..+++|+.|+|++|.+.++.+ +..+++|+.|+|++|.++.++ .+..+++|+.|+|++|++..
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEEC
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcC
Confidence 5555555444 334455555555555555554433 445555555555555554442 24455555555555555544
Q ss_pred c
Q psy16377 496 I 496 (1344)
Q Consensus 496 ~ 496 (1344)
.
T Consensus 212 ~ 212 (605)
T 1m9s_A 212 K 212 (605)
T ss_dssp C
T ss_pred C
Confidence 3
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=156.52 Aligned_cols=173 Identities=21% Similarity=0.331 Sum_probs=135.6
Q ss_pred cEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCc
Q psy16377 531 LWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNL 608 (1344)
Q Consensus 531 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~ 608 (1344)
+.+++++|+++.++. .+|.+++.|++++|.|+.++. .+..+++|+.|++++|+|+++.+..+. .+|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467778887777763 466789999999999988874 567788999999999999998876554 689999999999
Q ss_pred CCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCc
Q psy16377 609 IKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPK 688 (1344)
Q Consensus 609 i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~ 688 (1344)
|+++.+..|.++++|+.|+|++|+|+.++...+ .....+..+++++||+.|+|.+.||.......
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~---------- 154 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF-----NDLSALSHLAIGANPLYCDCNMQWLSDWVKSE---------- 154 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECCSSCEECSGGGHHHHHHHHHS----------
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh-----hcCccccEEEeCCCCeecCCcCHHHHHHHHhc----------
Confidence 999999999999999999999999998877554 24467899999999999999999987642211
Q ss_pred cccCCCceeecccCCCCccccccccCCCCCcCCCC
Q psy16377 689 IMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYD 723 (1344)
Q Consensus 689 ~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~ 723 (1344)
..+...+.|..|.. +++..+.+++..++.|.+.
T Consensus 155 ~~~~~~~~C~~P~~--l~g~~l~~~~~~~~~~~~~ 187 (193)
T 2wfh_A 155 YKEPGIARCAGPGE--MADKLLLTTPSKKFTCAAA 187 (193)
T ss_dssp SCCCSCCBEEESGG--GTTCBTTTSCGGGCCC---
T ss_pred cCCCCCcCcCCchH--HCCCCcccCChHHeeehhh
Confidence 12335678987654 4445677777777766554
No 133
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.1e-14 Score=156.18 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=114.4
Q ss_pred CCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK 202 (1344)
Q Consensus 123 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~ 202 (1344)
..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +.++++|++|++++|.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~-------------------l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP-------------------ISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGG-------------------GTTCTTCCEEEEECTT
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchh-------------------hhcCCCCCEEEeECCc
Confidence 45677888888888888777 36778888888888887665432 2347788888888888
Q ss_pred CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC-CCCCChhhhcCCCCCcEEEcccCcccccCh
Q psy16377 203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH-LVSLPEGLFSSCRDISEIYAQKNSLVELSR 281 (1344)
Q Consensus 203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~ 281 (1344)
++..... .+..+++|+.|++++|.+++..+..+..+++|++|++++|. +..++ .+..+++|++|++++|.+..++
T Consensus 100 l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 100 VTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp CBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-
T ss_pred cCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-
Confidence 8763333 57888888888888888887777888888888888888887 77775 3677788888888888777766
Q ss_pred hhhcCCCCCCEEEccCCCCCC
Q psy16377 282 GLFHKLEQLLVLDLSSNHLSS 302 (1344)
Q Consensus 282 ~~~~~l~~L~~L~Ls~n~l~~ 302 (1344)
.+..+++|+.|++++|.+.+
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 35677788888887777643
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=3.2e-14 Score=156.33 Aligned_cols=148 Identities=30% Similarity=0.440 Sum_probs=68.4
Q ss_pred cEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCC
Q psy16377 317 IILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396 (1344)
Q Consensus 317 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 396 (1344)
+.++.+++.++.++... .++|+.|+|++|.+..+.+..|..+++|+.|+|++|.+..+.+..|.++++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34444444444443321 144455555555554444444444555555555555544444444444444445555544
Q ss_pred cCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccC
Q psy16377 397 LLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467 (1344)
Q Consensus 397 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 467 (1344)
.+..+.+..|..+++|+.|+|++|.+..+|..+..+++|++|+|++|++..+.+..|..+++|+.|++++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 44444444444444555555555554444444444444444444444444443333333333433333333
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=2.6e-14 Score=152.39 Aligned_cols=174 Identities=16% Similarity=0.277 Sum_probs=133.7
Q ss_pred cEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCc
Q psy16377 531 LWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNL 608 (1344)
Q Consensus 531 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~ 608 (1344)
+.+++++|+++.++. .+|.+++.|++++|.++.++....+..+++|+.|++++|+++++.+..+. .+|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 567777777766654 45568888888888888776533456788999999999999998765554 589999999999
Q ss_pred CCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCc
Q psy16377 609 IKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPK 688 (1344)
Q Consensus 609 i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~ 688 (1344)
|.++.+..|.++++|++|+|++|+|+++.+..+ .....+..+++++||+.|+|.+.|+...-.. .
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~--------~-- 154 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-----EHLNSLTSLNLASNPFNCNCHLAWFAEWLRK--------K-- 154 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-----TTCTTCCEEECTTCCBCCSGGGHHHHHHHHH--------H--
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-----hcCCCCCEEEeCCCCccCcCcchHHHHHHHH--------c--
Confidence 999999999999999999999999998876554 3446789999999999999999988652110 0
Q ss_pred cccCCCceeecccCCCCccccccccCCCCCcCCC
Q psy16377 689 IMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPY 722 (1344)
Q Consensus 689 ~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~ 722 (1344)
........|..|. .+++.++.++...++.|.-
T Consensus 155 ~~~~~~~~C~~P~--~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 155 SLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp CCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred CCCCCCCCCCCCh--HHcCCChhhCcHhhcCcCC
Confidence 0112356687654 3556778888888887753
No 136
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.5e-14 Score=153.24 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=86.0
Q ss_pred cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390 (1344)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 390 (1344)
..+++|+.|++++|.+..+. .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.+..+..+.++++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455556666665555443 3555566666666666555443 3555666666666666666555555556666666
Q ss_pred EEccCCcCCCCChhhhcCCCCCcEEEccCCC-CCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC
Q psy16377 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNA-IVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 469 (1344)
|++++|.+.+..+..+..+++|+.|++++|. +..+| .+..+++|++|++++|.+.++. .+..+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 6666666655555555566666666666665 55554 4555556666666665555543 345555555555555554
No 137
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=1.1e-14 Score=163.59 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=106.6
Q ss_pred CCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEec
Q psy16377 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512 (1344)
Q Consensus 433 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 512 (1344)
.++..++++++.++++. .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+.+ +..++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~------- 85 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLT------- 85 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCS-------
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCC-------
Confidence 34455555555555543 3455555666666655555554 24455555555555555554443 44444
Q ss_pred cccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccc
Q psy16377 513 DSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592 (1344)
Q Consensus 513 ~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~ 592 (1344)
+|+.|++++|+++.++.... .+|+.|++++|.++.++. +..+++|+.|++++|+++++..
T Consensus 86 ----------------~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~~~~ 145 (263)
T 1xeu_A 86 ----------------KLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIVM 145 (263)
T ss_dssp ----------------SCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG---GTTCTTCCEEECTTSCCCBCGG
T ss_pred ----------------CCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh---hcCcccccEEECCCCcCCCChH
Confidence 44445555544444332222 556666666666666543 5567788888888888888765
Q ss_pred ccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccc
Q psy16377 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDL 638 (1344)
Q Consensus 593 ~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~ 638 (1344)
..-..+|+.|++++|++.+. ..+..+++|+.|++++|.++..+.
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 55556888888888888877 568888999999999998876543
No 138
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=6.5e-15 Score=165.46 Aligned_cols=150 Identities=26% Similarity=0.348 Sum_probs=68.0
Q ss_pred ccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCc
Q psy16377 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413 (1344)
Q Consensus 334 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 413 (1344)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.++.+ +.++++|+.|++++|.+.++.. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cccc
Confidence 334444444444444444433 23444444444444444444433 3444444444444444444322 111 4455
Q ss_pred EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493 (1344)
Q Consensus 414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i 493 (1344)
.|++++|.++.++ .+..+++|+.|++++|+++++. .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|++
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 5555555554443 2444555555555555554442 344445555555555554444 2244445555555555444
Q ss_pred cc
Q psy16377 494 HQ 495 (1344)
Q Consensus 494 ~~ 495 (1344)
..
T Consensus 185 ~~ 186 (263)
T 1xeu_A 185 VN 186 (263)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 139
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.48 E-value=2.1e-12 Score=153.50 Aligned_cols=287 Identities=16% Similarity=0.249 Sum_probs=120.3
Q ss_pred ccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhh
Q psy16377 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVF 146 (1344)
Q Consensus 67 f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~ 146 (1344)
|....+|+.+.+.. .++.|+..+|.+|.+|+.++|.. ....+...+|.++ +|+.+.+.. +++.+...+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--------~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF 110 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--------TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF 110 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--------TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--------cceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence 44444555555542 25555555555555555555521 1112334445544 355555443 2555555555
Q ss_pred cCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCC
Q psy16377 147 CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226 (1344)
Q Consensus 147 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n 226 (1344)
..+ +|+.+.+..+ +..+...+|. ..+|+.+.+..+ ++.+... .+..+..|+.+.+..+
T Consensus 111 ~~~-~L~~i~lp~~-~~~i~~~~F~------------------~~~l~~~~~~~~-v~~i~~~-~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 111 QGT-DLDDFEFPGA-TTEIGNYIFY------------------NSSVKRIVIPKS-VTTIKDG-IGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTT------------------TCCCCEEEECTT-CCEECSC-TTTTCTTCCEEEECTT
T ss_pred ccC-CcccccCCCc-cccccccccc------------------cceeeeeeccce-eeccccc-hhcccccccccccccc
Confidence 443 4555555432 3333333332 123333333322 3333333 4555555555554433
Q ss_pred CCCCc------------ChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEE
Q psy16377 227 EISQI------------APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLD 294 (1344)
Q Consensus 227 ~i~~~------------~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 294 (1344)
..... ....+.....+..+.+... ...+....|..+.+|+.+.+..+ +..+....|.++..|+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 169 NKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp CSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred cceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence 22111 0112222333333333222 22233334444444544444322 3344444444444444444
Q ss_pred ccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcc
Q psy16377 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374 (1344)
Q Consensus 295 Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 374 (1344)
+..+ ++. +....|.++.+|+.+.+.. .+..+...+|.+|.+|+.+.+.++.+..++..+|.++.+|+.+.|..+ +
T Consensus 247 lp~~-v~~--I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l 321 (379)
T 4h09_A 247 IPKN-VTS--IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L 321 (379)
T ss_dssp ECTT-CCE--ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred cCCC-ccE--eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence 4433 221 3334444444444444432 233344444444444444444444444444444444444444444322 3
Q ss_pred cccccccccCCCceeEEEc
Q psy16377 375 HHITAHLFNGLYVLSKLTL 393 (1344)
Q Consensus 375 ~~~~~~~~~~l~~L~~L~L 393 (1344)
+.+...+|.++.+|+.+.+
T Consensus 322 ~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 322 KTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEECTTTTTTCTTCCCCCC
T ss_pred cEEHHHHhhCCCCCCEEEE
Confidence 3333334444444444443
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=3.6e-14 Score=147.74 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=121.4
Q ss_pred CCCCCCCccEEEEeCCccc--ccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCcc
Q psy16377 772 PPRIPMDATHVYLDGNTFK--TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLE 849 (1344)
Q Consensus 772 p~~ip~~l~~L~L~~n~l~--~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 849 (1344)
+...|..++.|++++|.++ .++.. |..+++|+.|++++|.|+.+ ..|..+++|++|+|++|+++...+..+..++
T Consensus 19 ~~~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 19 RNRTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4455678999999999998 77654 78899999999999999988 7899999999999999999997777888899
Q ss_pred ccceeeccccccccccC-ccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEEecCCccc
Q psy16377 850 KLSELYLQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVYLGNNPFS 910 (1344)
Q Consensus 850 ~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~l~~Np~~ 910 (1344)
+|+.|+|++|+|+.++. ..|..+++|++|+|++|+++.+++ ..+..+++|++|++++|+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999999865 788899999999999999999988 67888999999999998764
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.46 E-value=2.3e-12 Score=153.11 Aligned_cols=314 Identities=15% Similarity=0.217 Sum_probs=138.8
Q ss_pred hcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcch
Q psy16377 91 FSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF 170 (1344)
Q Consensus 91 f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 170 (1344)
|....+|+.+.+. .....+...+|.+|.+|+.++|..+ ++.|...+|.++ +|+.+.+.. .++.++..+|
T Consensus 42 ~~~~~~i~~v~ip--------~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF 110 (379)
T 4h09_A 42 YKDRDRISEVRVN--------SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF 110 (379)
T ss_dssp GGGGGGCSEEEEC--------TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred cccccCCEEEEeC--------CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence 4555667777773 2223344556777777777777543 666666666665 466665543 2444444444
Q ss_pred hhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCC
Q psy16377 171 AVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250 (1344)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 250 (1344)
. ..+|+.+++..+ ++.+... .|.++ +|+.+.+.. .++.+...+|.++..|+.+.+..+
T Consensus 111 ~------------------~~~L~~i~lp~~-~~~i~~~-~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 111 Q------------------GTDLDDFEFPGA-TTEIGNY-IFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp T------------------TCCCSEEECCTT-CCEECTT-TTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred c------------------cCCcccccCCCc-ccccccc-ccccc-eeeeeeccc-eeeccccchhcccccccccccccc
Confidence 2 224555555443 3333332 33333 333333322 233333334444444444444333
Q ss_pred CCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccc
Q psy16377 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID 330 (1344)
Q Consensus 251 ~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 330 (1344)
....+....+.. +.. ......+..+..+..+.+...... +....+..+.+|+.+.+..+ +..+.
T Consensus 169 ~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~f~~~~~l~~i~~~~~-~~~i~ 232 (379)
T 4h09_A 169 NKNYVAENYVLY-----------NKN-KTILESYPAAKTGTEFTIPSTVKT---VTAYGFSYGKNLKKITITSG-VTTLG 232 (379)
T ss_dssp CSSEEEETTEEE-----------ETT-SSEEEECCTTCCCSEEECCTTCCE---ECTTTTTTCSSCSEEECCTT-CCEEC
T ss_pred cceeecccceec-----------ccc-cceeccccccccccccccccceeE---Eeecccccccccceeeeccc-eeEEc
Confidence 211110000000 000 000001122233333333222111 22233344444444444322 33334
Q ss_pred cccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCC
Q psy16377 331 AKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410 (1344)
Q Consensus 331 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 410 (1344)
..+|.++..|+.+.+..+ +..+...+|.++.+|+.+.+ .. .+..+...+|.+|+
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l------------------------~~-~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF------------------------YA-KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE------------------------CC-CCSEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhccccc------------------------cc-cceecccccccccc
Confidence 444444444554444433 44444444444444444444 32 23333344445555
Q ss_pred CCcEEEccCCCCCccc-hhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCC
Q psy16377 411 ALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481 (1344)
Q Consensus 411 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 481 (1344)
+|+.+.+.++.+..|+ .+|.++.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+ ++.|...+|.++.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 5555555544444443 24445555555555432 45555555666666666655432 5555555555554
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=1.1e-15 Score=190.08 Aligned_cols=216 Identities=21% Similarity=0.271 Sum_probs=112.9
Q ss_pred cCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcc
Q psy16377 261 SSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFL 340 (1344)
Q Consensus 261 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 340 (1344)
..+++|+.|+|++|.+..+|..+ +++++|+.|++++|... ..++.+ +..+...+..+..+..+++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l---------~~l~~l----l~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCL---------LTIILL----MRALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHH---------HHHHHH----HHHHCTGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhh---------hhHHHH----HHhcccccCCHHHHHHHHhc
Confidence 34566666777777666665543 66666776666443210 000000 00111223344455555666
Q ss_pred cEEE-ecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccC
Q psy16377 341 QRLD-LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419 (1344)
Q Consensus 341 ~~L~-Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 419 (1344)
+.|+ ++.|.+. +|..+.+++|.+..+.+ ..|+.|++++|.+++++ . |..+++|+.|+|++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSH 472 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCS
T ss_pred ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCc-C-ccccccCcEeecCc
Confidence 6555 4433222 22223333443333322 12555666666665543 2 55566666666666
Q ss_pred CCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCC-cccccCCCCccEEEcCCCcCccccc
Q psy16377 420 NAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS-SGMLYELPSLEVLNLSKNKIHQIEI 498 (1344)
Q Consensus 420 n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~n~i~~~~~ 498 (1344)
|.++.+|..++.+++|+.|+|++|.+++++ .|..+++|+.|+|++|.++.+. +..+..+++|+.|++++|+++++++
T Consensus 473 N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 473 NRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 666666666666666666666666666542 5566666666666666665553 3445666666666666666655543
Q ss_pred c---cccCCCccceEe
Q psy16377 499 G---TFEKNKRLAAIR 511 (1344)
Q Consensus 499 ~---~~~~l~~L~~L~ 511 (1344)
. .+..+++|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 2 122355666654
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=4.5e-15 Score=184.73 Aligned_cols=120 Identities=24% Similarity=0.356 Sum_probs=81.4
Q ss_pred CCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC
Q psy16377 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490 (1344)
Q Consensus 411 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 490 (1344)
.|+.|+|++|.++.+|. +..+++|+.|+|++|.++.+ |..|..+++|+.|+|++|.++.+| .+..+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence 46777777777777765 77777777777777777744 446677777777777777776665 366777777777777
Q ss_pred CcCcccc-cccccCCCccceEeccccCCCChhh----HhhcCCCCcEEE
Q psy16377 491 NKIHQIE-IGTFEKNKRLAAIRLDSNFLTDING----VFTYLAQLLWLN 534 (1344)
Q Consensus 491 n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~ 534 (1344)
|+++++. +..|..+++|+.|+|++|.++++|. .+..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 7777665 6666677777777777777665432 334466666665
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=1.7e-13 Score=143.83 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=112.4
Q ss_pred CCCccEEEEeCCcccccCCCcCCCC-CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCcccccee
Q psy16377 776 PMDATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL 854 (1344)
Q Consensus 776 p~~l~~L~L~~n~l~~l~~~~f~~l-~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 854 (1344)
+..++.|++++|+++.++. +..+ ++|+.|++++|+|+.+ ..|.++++|++|+|++|+|+.+++..|..+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3567899999999998853 4444 4999999999999988 678899999999999999999988888999999999
Q ss_pred eccccccccccC-ccccCCCCCCEEEccCCCCcccccc---cccCCCCCcEEEecCCccc
Q psy16377 855 YLQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRAF---DLNTNSMLRKVYLGNNPFS 910 (1344)
Q Consensus 855 ~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~l~~~~~L~~L~l~~Np~~ 910 (1344)
+|++|+|+.++. ..|..+++|++|+|++|.++.++.. .+..+++|+.|++++|+..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998876 5788899999999999999988775 5777899999999988754
No 145
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=1.5e-13 Score=139.90 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=114.6
Q ss_pred CCCccEEEEeCCccc--ccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccce
Q psy16377 776 PMDATHVYLDGNTFK--TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSE 853 (1344)
Q Consensus 776 p~~l~~L~L~~n~l~--~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 853 (1344)
+..++.|++++|.++ .++. .|..+++|+.|++++|+++.+ ..|.++++|++|+|++|+++...+..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467899999999998 6665 678899999999999999998 78999999999999999999976778888999999
Q ss_pred eecccccccccc-CccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEEecC
Q psy16377 854 LYLQENRIEYIA-NGTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVYLGN 906 (1344)
Q Consensus 854 L~L~~N~l~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~l~~ 906 (1344)
|+|++|+|+.++ +..|..+++|++|+|++|+++.+++ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999985 3788899999999999999999988 6788889999998764
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=9.9e-14 Score=178.15 Aligned_cols=122 Identities=25% Similarity=0.336 Sum_probs=69.7
Q ss_pred cCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEE
Q psy16377 117 LVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRIL 196 (1344)
Q Consensus 117 ~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 196 (1344)
..+..|..++.|+.|+|++|.+..++...+ .+++|++|+|++|.|+.++.. +.++++|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~------------------~~~l~~L~~L 275 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAE------------------IKNLSNLRVL 275 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGG------------------GGGGTTCCEE
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChh------------------hhCCCCCCEE
Confidence 456666667777777777777776666543 566666666666666655421 1225666666
Q ss_pred ECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhh
Q psy16377 197 DLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLF 260 (1344)
Q Consensus 197 dLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f 260 (1344)
+|++|.|+.+|. .|.++++|+.|+|++|.++.+ |..|+++++|++|+|++|.+...++..|
T Consensus 276 ~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 276 DLSHNRLTSLPA--ELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp ECTTSCCSSCCS--SGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred eCcCCcCCccCh--hhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 666666666554 356666666666666666544 4446666666666666666665444443
No 147
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.1e-12 Score=136.61 Aligned_cols=131 Identities=27% Similarity=0.305 Sum_probs=72.3
Q ss_pred CCCcEEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEE
Q psy16377 410 SALKELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLN 487 (1344)
Q Consensus 410 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 487 (1344)
++|+.|++++|.+. .+|..+..+++|++|++++|.+.++ ..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555555 5555555555555555555555554 3455555555555555555443333344455566666
Q ss_pred cCCCcCccccc-ccccCCCccceEeccccCCCChhh----HhhcCCCCcEEEcCCCCCcc
Q psy16377 488 LSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDING----VFTYLAQLLWLNLSENHLVW 542 (1344)
Q Consensus 488 Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~Ls~n~l~~ 542 (1344)
+++|.++.+.. ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 66665555432 445555666666666666655543 55566666666666665543
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=2.9e-13 Score=173.84 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=83.1
Q ss_pred hhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCC
Q psy16377 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS 482 (1344)
Q Consensus 403 ~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 482 (1344)
+..|..++.|+.|+|++|.+..+|..+..+++|++|+|++|.++.+ +..|.++++|+.|+|++|.++.+|.. |.++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSS-GGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChh-hcCCCC
Confidence 4455566666666666666666666666666666666666666633 34566666666666666666666443 556666
Q ss_pred ccEEEcCCCcCcccccccccCCCccceEeccccCCCCh-hhHhhcCC-CCcEEEcCCCCCccccCCCcCCCccEEEcCCC
Q psy16377 483 LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLA-QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560 (1344)
Q Consensus 483 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n 560 (1344)
|++|+|++|.|+.++. .|..+++|+.|+|++|.++.. |..+..+. .+..|++++|.+. +.+|..+++|++++|
T Consensus 295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~----~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE----IPLPHERRFIEINTD 369 (727)
T ss_dssp CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCC---------
T ss_pred CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc----CcCccccceeEeecc
Confidence 6666666666665543 366666666677776666643 33333221 1123567777765 567777888887776
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.3e-12 Score=135.23 Aligned_cols=111 Identities=26% Similarity=0.307 Sum_probs=50.9
Q ss_pred cCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEE
Q psy16377 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL 462 (1344)
Q Consensus 383 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 462 (1344)
..+.+|+.|++++|.+..+ +......++|+.|++++|.+..+ ..+..+++|++|++++|.++++++..|..+++|+.|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3444555555555555544 22111122555555555555544 344445555555555555554444444444445555
Q ss_pred EcccCCCCCCCc-ccccCCCCccEEEcCCCcCcc
Q psy16377 463 RLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQ 495 (1344)
Q Consensus 463 ~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~i~~ 495 (1344)
++++|.++.++. ..+..+++|+.|++++|++..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 555444444432 223444444444444444433
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.30 E-value=5.9e-12 Score=124.01 Aligned_cols=48 Identities=29% Similarity=0.637 Sum_probs=37.2
Q ss_pred CCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377 896 NSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP 945 (1344)
Q Consensus 896 ~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~ 945 (1344)
+++|+.|+|++|||.|||+ +.||+.|+++....+. ..+++|..|....
T Consensus 54 l~~L~~L~L~~NP~~CdC~-l~~l~~wl~~~~~~~~-~~~~~C~~P~~l~ 101 (130)
T 3rfe_A 54 LPALRTAHLGANPWRCDCR-LVPLRAWLAGRPERAP-YRDLRCVAPPALR 101 (130)
T ss_dssp CTTCCEEECCSSCCBCSGG-GHHHHHHHHTSSCSGG-GTTCBCCBSTTTT
T ss_pred ccccCEEEecCCCeeccCc-cHHHHHHHHhCccccc-ccCcEeCcChHHc
Confidence 3445557888999999999 7999999987755443 5789999987644
No 151
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=8.2e-12 Score=126.97 Aligned_cols=104 Identities=29% Similarity=0.320 Sum_probs=47.6
Q ss_pred cCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc--hhhcCCCCcc
Q psy16377 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP--SALSELPFLK 436 (1344)
Q Consensus 359 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 436 (1344)
..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++ ..+..+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 3444444444444444433 23344444444444444444433444444455555555555554432 3444455555
Q ss_pred EEEccCCCCCccCc---chhcCCCCCcEEEc
Q psy16377 437 TLDLGENQISKIEN---GSFKNLQQLTDLRL 464 (1344)
Q Consensus 437 ~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L 464 (1344)
+|++++|.+++..+ ..+..+++|+.|++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555554444433 33444444444444
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=1.3e-10 Score=121.02 Aligned_cols=107 Identities=27% Similarity=0.408 Sum_probs=98.1
Q ss_pred cccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEc
Q psy16377 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA 271 (1344)
Q Consensus 192 ~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L 271 (1344)
..+.|++++|.++.+|.. + .++|+.|+|++|.++++.+..|.++++|++|+|++|.++.+++..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~--~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG--I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSC--C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCcc--C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 568999999999999874 3 388999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377 272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302 (1344)
Q Consensus 272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~ 302 (1344)
++|.+..+++..|..+++|+.|+|++|.+..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999999999888999999999999998865
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=1.9e-10 Score=120.18 Aligned_cols=106 Identities=26% Similarity=0.451 Sum_probs=96.6
Q ss_pred ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272 (1344)
Q Consensus 193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 272 (1344)
-+.+++++|+++.+|.. +. ++|+.|+|++|.+.++.|..|.++++|++|+|++|.++.+|...|.++++|+.|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~--~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG--IP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSC--CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCC--cC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 47899999999999874 43 899999999999999989999999999999999999999999999999999999999
Q ss_pred cCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302 (1344)
Q Consensus 273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~ 302 (1344)
+|.+..+++..|..+++|+.|+|++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999998888899999999999998765
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=6.3e-13 Score=142.41 Aligned_cols=133 Identities=23% Similarity=0.362 Sum_probs=114.3
Q ss_pred CCccEEEEeCC--cccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCcccccee
Q psy16377 777 MDATHVYLDGN--TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL 854 (1344)
Q Consensus 777 ~~l~~L~L~~n--~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 854 (1344)
.+++...+.+. .++.++. .|..+++|+.|++++|+++.++ .|.++++|+.|+|++|+++.++. .+..+++|+.|
T Consensus 23 l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L 98 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEEL 98 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEE
T ss_pred cchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEE
Confidence 34556666653 5566654 6888999999999999999976 89999999999999999998864 67778999999
Q ss_pred eccccccccccCccccCCCCCCEEEccCCCCccccc-ccccCCCCCcEEEecCCcccCCChh
Q psy16377 855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA-FDLNTNSMLRKVYLGNNPFSCSCAT 915 (1344)
Q Consensus 855 ~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~l~~~~~L~~L~l~~Np~~C~C~~ 915 (1344)
+|++|+|+.++ .|..+++|++|+|++|+++.++. ..+..+++|++|++++|++.|.|+.
T Consensus 99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999986 58888999999999999999876 5678899999999999999999863
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=8.4e-13 Score=141.42 Aligned_cols=112 Identities=27% Similarity=0.281 Sum_probs=65.9
Q ss_pred cccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCc
Q psy16377 381 LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460 (1344)
Q Consensus 381 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 460 (1344)
.+..+++|+.|++++|.+.++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|.++++. .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 4555556666666666655543 455566666666666666666655555566666666666666542 355556666
Q ss_pred EEEcccCCCCCCCc-ccccCCCCccEEEcCCCcCccc
Q psy16377 461 DLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQI 496 (1344)
Q Consensus 461 ~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~i~~~ 496 (1344)
.|++++|.++.++. ..+..+++|++|++++|++...
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 66666666655443 3455566666666666655443
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=1.4e-10 Score=136.65 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=69.1
Q ss_pred CCccEEEccCCcccccccccc-cCCCceeEEEccCCcCCCCChhhh-----cCCCCCcEEEccCCCCCc-----cchhhc
Q psy16377 362 YNLHTIYLSENRIHHITAHLF-NGLYVLSKLTLSNNLLVNIDSKAF-----KNCSALKELDLSSNAIVE-----IPSALS 430 (1344)
Q Consensus 362 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~-----lp~~l~ 430 (1344)
++|+.|+|++|.+.......+ ..+.+|+.|+|++|.+.......+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555443222111 223455666666665544333332 234566666666666652 344455
Q ss_pred CCCCccEEEccCCCCCccC----cchhcCCCCCcEEEcccCCCCCCCcc----cccCCCCccEEEcCCCcCcccc
Q psy16377 431 ELPFLKTLDLGENQISKIE----NGSFKNLQQLTDLRLVDNNIGNLSSG----MLYELPSLEVLNLSKNKIHQIE 497 (1344)
Q Consensus 431 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~n~i~~~~ 497 (1344)
.+++|++|+|++|.+.+.. ...+..+++|+.|+|++|.++..... .+..+++|++|+|++|.|+...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 6666777777766665533 23344455566666666655432211 1223455666666666555443
No 157
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=98.97 E-value=5.2e-10 Score=115.66 Aligned_cols=87 Identities=9% Similarity=0.152 Sum_probs=76.4
Q ss_pred Cchh--HHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHH
Q psy16377 1035 PKDE--EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIE 1112 (1344)
Q Consensus 1035 ~~d~--~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~ 1112 (1344)
++|. .|| ..|++.|+. .|+++|+++||+.+|..+. +.|.+
T Consensus 44 g~D~r~~Fv-~~L~~aL~~--~GI~~f~D~~el~~G~~I~-----------------------------------~~l~~ 85 (204)
T 3ozi_A 44 GPDTREQFT-DFLYQSLRR--YKIHTFRDDDELLKGKEIG-----------------------------------PNLLR 85 (204)
T ss_dssp HHHHTTTHH-HHHHHHHHH--TTCCEEEEETTTCCGGGTT-----------------------------------TTHHH
T ss_pred ccCCCHHHH-HHHHHHHHH--CCCcEEEeCCccCCCCchH-----------------------------------HHHHH
Confidence 4554 355 778999996 4799999999999999999 89999
Q ss_pred HHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377 1113 AAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus 1113 ~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
||+.||..|+|+|++|..|.||..|+..+++..-..+...||+|+|+
T Consensus 86 aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~ 132 (204)
T 3ozi_A 86 AIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYM 132 (204)
T ss_dssp HHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEES
T ss_pred HHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEee
Confidence 99999999999999999999999999999886544567899999996
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=9.3e-10 Score=128.85 Aligned_cols=130 Identities=18% Similarity=0.350 Sum_probs=100.7
Q ss_pred EEcCCC-cCCCCCccccccCCCcccEEECCC-Cccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecC
Q psy16377 555 LDIHGN-YISSLNNYYEIKDGLSIKNLDASH-NRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYA 630 (1344)
Q Consensus 555 L~Ls~n-~l~~l~~~~~l~~~~~L~~L~Ls~-N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~ 630 (1344)
++++++ .++.+|. +..+.+|+.|+|++ |+|.++++..+. .+|+.|+|++|+|+++.|..|.++++|+.|+|++
T Consensus 13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 466666 6777765 55677899999996 999988875554 5899999999999999999999999999999999
Q ss_pred CCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeeccc
Q psy16377 631 NDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTY 701 (1344)
Q Consensus 631 N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~ 701 (1344)
|+|+.++...+.. ..|..+++.+|++.|+|.+.||....... ...++...+.|..+.
T Consensus 90 N~l~~~~~~~~~~------~~L~~l~l~~N~~~c~c~l~~~~~~~~~~--------~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 90 NALESLSWKTVQG------LSLQELVLSGNPLHCSCALRWLQRWEEEG--------LGGVPEQKLQCHGQG 146 (347)
T ss_dssp SCCSCCCSTTTCS------CCCCEEECCSSCCCCCGGGHHHHHHHHTT--------CSSCGGGCCCCSSSS
T ss_pred CccceeCHHHccc------CCceEEEeeCCCccCCCccHHHHHHHHhC--------cccccccCCCCCCCh
Confidence 9999988765532 23899999999999999999997643221 112344567776543
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=1.7e-10 Score=135.93 Aligned_cols=136 Identities=22% Similarity=0.226 Sum_probs=61.3
Q ss_pred CcccEEEccCCCCCccccccc-cCCCcccEEEecCCCccccchhhh-----cCCCCccEEEccCCcccccccc----ccc
Q psy16377 314 IRLIILNLSNNELTRIDAKTF-KDLVFLQRLDLRNNSIGYIEDNAF-----LSLYNLHTIYLSENRIHHITAH----LFN 383 (1344)
Q Consensus 314 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~f-----~~l~~L~~L~Ls~n~l~~~~~~----~~~ 383 (1344)
.+|+.|+|++|.++......+ ..+.+|+.|+|++|.++......+ ...++|+.|+|++|.++..... .+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555443222211 223455666666665543332222 2345566666666655442221 223
Q ss_pred CCCceeEEEccCCcCCCCC----hhhhcCCCCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccC
Q psy16377 384 GLYVLSKLTLSNNLLVNID----SKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIE 449 (1344)
Q Consensus 384 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~ 449 (1344)
.+++|++|+|++|.+.+.. ...+..+++|+.|+|++|.++. ++..+..+++|++|+|++|.|++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3444555555555443322 2233344455555555555541 2233334455555555555544433
No 160
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=98.74 E-value=1.2e-09 Score=110.91 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=79.8
Q ss_pred ccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCcc
Q psy16377 1026 HFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWS 1105 (1344)
Q Consensus 1026 ~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~ 1105 (1344)
.|+.+..+.++|+..+...|...|+. .|+++|+.++|+.+|..+.
T Consensus 20 ~~dvFISy~~~D~~~~~~~L~~~L~~--~gi~v~~D~~~l~~G~~~~--------------------------------- 64 (154)
T 3h16_A 20 PHDIFISHAWEDKADFVEALAHTLRA--AGAEVWYDDFSLRPGDSLR--------------------------------- 64 (154)
T ss_dssp SEEEEEEEEGGGTTTTHHHHHHHHHH--HTCCEECGGGEECTTCCHH---------------------------------
T ss_pred CceEEEECcccChHHHHHHHHHHHHH--CCCcEEEcHHhCCCccHHH---------------------------------
Confidence 33444444466765444678999996 4699999999999999999
Q ss_pred chhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecC
Q psy16377 1106 RSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENI 1160 (1344)
Q Consensus 1106 ~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~ 1160 (1344)
+.|.++|+.||++|+|+|++|+.++||..|+..|+.. ..++..++|+|+++.
T Consensus 65 --~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~-~~~~~~~iiPV~~~v 116 (154)
T 3h16_A 65 --RSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQL-ESSGRSRILPIWHKV 116 (154)
T ss_dssp --HHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCC-CTTSCCCEEEEEESC
T ss_pred --HHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHH-HhcCCCEEEEEEecC
Confidence 8999999999999999999999999999999999874 345667899999853
No 161
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=98.71 E-value=4.1e-09 Score=107.36 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCccCCCCchh--HHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCcc
Q psy16377 1028 GEDREKLPKDE--EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWS 1105 (1344)
Q Consensus 1028 ~~~~~~~~~d~--~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~ 1105 (1344)
|.+...-++|. .|| ..|.+.|+. .|++.|++++|+.+|..+.
T Consensus 10 DVFiSfrg~D~r~~Fv-~~L~~~L~~--~gi~~f~D~~~l~~G~~i~--------------------------------- 53 (176)
T 3jrn_A 10 DVFLSFRGHDTRHNFI-SFLYKELVR--RSIRTFKDDKELENGQRFS--------------------------------- 53 (176)
T ss_dssp EEEEEECHHHHTTTHH-HHHHHHHHH--TTCCEECCCC------------------------------------------
T ss_pred eEEEECcCcccChHHH-HHHHHHHHH--CCCEEEEEcccccCCCchH---------------------------------
Confidence 33333334554 466 678999996 4799999999999999999
Q ss_pred chhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377 1106 RSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus 1106 ~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
+.|.+||+.||..|+|+|++|..|.||..|+..++.. .+++...||+|+|+
T Consensus 54 --~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~-~~~~~~~ViPIfy~ 104 (176)
T 3jrn_A 54 --PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYG 104 (176)
T ss_dssp -------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHH-HHTTSCEEEEEECS
T ss_pred --HHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhh-hccCCCEEEEEEec
Confidence 8999999999999999999999999999999988875 47788999999995
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=1.4e-07 Score=109.99 Aligned_cols=135 Identities=17% Similarity=0.254 Sum_probs=66.9
Q ss_pred hhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhc--CCCCCcEEEccc--CC-CC-----CCC
Q psy16377 404 KAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK--NLQQLTDLRLVD--NN-IG-----NLS 473 (1344)
Q Consensus 404 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~--n~-l~-----~l~ 473 (1344)
..+..+++|+.|+|++|.-..++. +. +++|+.|+|..|.+.......+. .+++|+.|+|+. +. .+ .+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 334555666666666553223332 22 56666666666655443322332 456666666542 11 11 111
Q ss_pred cccc--cCCCCccEEEcCCCcCcccccccc---cCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCCc
Q psy16377 474 SGML--YELPSLEVLNLSKNKIHQIEIGTF---EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLV 541 (1344)
Q Consensus 474 ~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~ 541 (1344)
. .+ ..+++|+.|++.+|.+.......+ ..+++|+.|+|+.|.+++ ++..+..+++|+.|+|++|.++
T Consensus 244 ~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 P-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp G-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred H-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1 11 235677777777666653221111 235566666666666654 2222344566666666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.36 E-value=2.8e-07 Score=90.43 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=67.5
Q ss_pred EEECCCCccc--ccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEE
Q psy16377 579 NLDASHNRIL--EISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656 (1344)
Q Consensus 579 ~L~Ls~N~l~--~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~ 656 (1344)
.++.+++.++ .++ ..+|.+|+.|+|++|+|+.+.+..|..+++|+. ++
T Consensus 12 ~v~Cs~~~L~~~~vP-~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~-----------------------------L~ 61 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TAFPVDTTELVLTGNNLTALPPGLLDALPALRT-----------------------------AH 61 (130)
T ss_dssp EEECCSSCCCTTTSC-SCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCE-----------------------------EE
T ss_pred EEEeCCCCCccccCC-CCCCcCCCEEECCCCcCCccChhhhhhccccCE-----------------------------EE
Confidence 5677777776 443 356667777777777777776666666655544 55
Q ss_pred cCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCc
Q psy16377 657 LGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYL 719 (1344)
Q Consensus 657 l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~ 719 (1344)
+++|||.|||.+.||...... .........+.|..|.. +++.++.++...++.
T Consensus 62 L~~NP~~CdC~l~~l~~wl~~--------~~~~~~~~~~~C~~P~~--l~g~~l~~l~~~~l~ 114 (130)
T 3rfe_A 62 LGANPWRCDCRLVPLRAWLAG--------RPERAPYRDLRCVAPPA--LRGRLLPYLAEDELR 114 (130)
T ss_dssp CCSSCCBCSGGGHHHHHHHHT--------SSCSGGGTTCBCCBSTT--TTTCBGGGCCHHHHH
T ss_pred ecCCCeeccCccHHHHHHHHh--------CcccccccCcEeCcChH--HcCCCcccCCHHHhh
Confidence 678999999999998764221 11122346788987654 455677777777775
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=8.1e-07 Score=103.50 Aligned_cols=82 Identities=24% Similarity=0.332 Sum_probs=43.6
Q ss_pred CCCCcEEEcccCCCCCCCcccc---cCCCCccEEEcCCCcCcccccc----cccCCCccceEeccccCCCChh-hHhhc-
Q psy16377 456 LQQLTDLRLVDNNIGNLSSGML---YELPSLEVLNLSKNKIHQIEIG----TFEKNKRLAAIRLDSNFLTDIN-GVFTY- 526 (1344)
Q Consensus 456 l~~L~~L~L~~n~l~~l~~~~~---~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~l~-~~~~~- 526 (1344)
+++|+.|+|.+|.++......+ ..+++|++|+|+.|.+...... .+..+++|+.|+|++|.+++.. ..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4556666666555532111111 1356677777777766654222 2234567777777777766421 22222
Q ss_pred CCCCcEEEcCCCC
Q psy16377 527 LAQLLWLNLSENH 539 (1344)
Q Consensus 527 l~~L~~L~Ls~n~ 539 (1344)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3567777766
No 165
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=5.8e-06 Score=86.81 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=35.0
Q ss_pred hhcCCCCCcEEEccCC-CCC-----ccchhhcCCCCccEEEccCCCCCccCc----chhcCCCCCcEEEcccCCC
Q psy16377 405 AFKNCSALKELDLSSN-AIV-----EIPSALSELPFLKTLDLGENQISKIEN----GSFKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 405 ~~~~l~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l 469 (1344)
.+...++|++|+|++| .+. .+...+...++|++|+|++|.+..... ..+...++|+.|+|++|.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3445566666666666 554 234455556666777776666655322 2223334455555555544
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1.3e-06 Score=96.56 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=53.9
Q ss_pred hcCCCccce--eecccccccccC---cccccCccccceeeccccccccccC--ccccCCCCCCEEEccCCCCccccc-cc
Q psy16377 821 FNGLSSLQV--LHLENNLITHFY---GYEFDNLEKLSELYLQENRIEYIAN--GTFNALISLQVLQLDGNRLKSFRA-FD 892 (1344)
Q Consensus 821 f~~l~~L~~--L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~-~~ 892 (1344)
|...+.|.. ++++.|+...+. .....++++|+.|+|++|+|++++. ..+..+++|+.|+|++|+|+.+.. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 444455554 566666443332 1222456677777777777777653 445567777777777777777622 22
Q ss_pred ccCCCCCcEEEecCCcccC
Q psy16377 893 LNTNSMLRKVYLGNNPFSC 911 (1344)
Q Consensus 893 l~~~~~L~~L~l~~Np~~C 911 (1344)
+..+ +|++|+|++||+.-
T Consensus 217 l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp GTTS-CCSEEECTTSTTGG
T ss_pred cccC-CcceEEccCCcCcc
Confidence 2223 77888888888643
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=1.2e-05 Score=84.34 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=28.8
Q ss_pred CCCCcEEEccCCCCCc-----cchhhcCCCCccEEEc--cCCCCCccCc----chhcCCCCCcEEEcccCCC
Q psy16377 409 CSALKELDLSSNAIVE-----IPSALSELPFLKTLDL--GENQISKIEN----GSFKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 409 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--s~n~i~~~~~----~~~~~l~~L~~L~L~~n~l 469 (1344)
.++|++|+|++|.+.. +...+...+.|++|+| ++|.+..... ..+...++|+.|+|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3445555555554441 3334444455555555 4455544321 2233345555555555554
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=1.2e-05 Score=88.79 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCCCCCccE--EEccCCcccccc---cchhcCCCccceeecccccccccCc--ccccCccccceeeccccccccccC-cc
Q psy16377 797 FIGRKNMLS--LYVNNSQIEVIL---NQTFNGLSSLQVLHLENNLITHFYG--YEFDNLEKLSELYLQENRIEYIAN-GT 868 (1344)
Q Consensus 797 f~~l~~L~~--L~l~~n~i~~i~---~~~f~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~~N~l~~i~~-~~ 868 (1344)
|...+.|.. ++++.|+...+. .-...++++|+.|+|++|+|+.+.+ ..+..+++|+.|+|++|+|+++.. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 444455555 667777544332 2344678999999999999999764 567789999999999999998833 34
Q ss_pred ccCCCCCCEEEccCCCCcc-cc------cccccCCCCCcEEE
Q psy16377 869 FNALISLQVLQLDGNRLKS-FR------AFDLNTNSMLRKVY 903 (1344)
Q Consensus 869 f~~l~~L~~L~L~~N~l~~-~~------~~~l~~~~~L~~L~ 903 (1344)
+..+ +|++|+|++|.+.. ++ ...+..+++|+.||
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4444 99999999999975 32 12344566666654
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.35 E-value=7.8e-05 Score=76.30 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=39.9
Q ss_pred CccEEEccCCCCCccCcchhcCCCCCcEEEcccCC-CCCCCcccccCC----CCccEEEcCCC-cCcccccccccCCCcc
Q psy16377 434 FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN-IGNLSSGMLYEL----PSLEVLNLSKN-KIHQIEIGTFEKNKRL 507 (1344)
Q Consensus 434 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l----~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 507 (1344)
.|+.||+++|.++...-..+.++++|+.|+|++|. +++-.-..+..+ ++|+.|+|++| +|++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444444555555555555553 322221222222 34556666555 2554444444555556
Q ss_pred ceEecccc
Q psy16377 508 AAIRLDSN 515 (1344)
Q Consensus 508 ~~L~L~~n 515 (1344)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66666555
No 170
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.33 E-value=0.00016 Score=73.91 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=41.8
Q ss_pred ceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCC-CCc-cchhhcCC----CCccEEEccCCC-CCccCcchhcCCCCC
Q psy16377 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA-IVE-IPSALSEL----PFLKTLDLGENQ-ISKIENGSFKNLQQL 459 (1344)
Q Consensus 387 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-lp~~l~~l----~~L~~L~Ls~n~-i~~~~~~~~~~l~~L 459 (1344)
.|+.|++++|.++......+.+|++|+.|+|++|. ++. --..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665555444445556666666666653 431 11223332 346666666653 555444444555555
Q ss_pred cEEEcccC
Q psy16377 460 TDLRLVDN 467 (1344)
Q Consensus 460 ~~L~L~~n 467 (1344)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 171
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=96.98 E-value=0.00019 Score=73.90 Aligned_cols=43 Identities=37% Similarity=0.593 Sum_probs=31.3
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHHHHH----H-hcccEEEEecc
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAA----E-ASRRVILVLTK 1126 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i----~-~srr~i~vls~ 1126 (1344)
+||+.||++|+|+|+||++++||..|. ..|+ + ..+++|.|+-.
T Consensus 86 ~aI~~Sr~~IvVlS~~yl~S~wc~~El-~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 86 SFIEKSYKSIFVLSPNFVQNEWCHYEF-YFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp HHHHTEEEEEEEECHHHHHHTGGGTHH-HHTTCC-------CEEEEESS
T ss_pred HHHHhCCEEEEEecccccccchHHHHH-HHHHHHHHhcCCCEEEEEEec
Confidence 688999999999999999999999875 3333 2 34566666643
No 172
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=96.94 E-value=0.00047 Score=69.71 Aligned_cols=42 Identities=29% Similarity=0.545 Sum_probs=32.1
Q ss_pred HHHhhhheeeeeeecccc-cCCccchhH---HHHHHHhc-ccEEEEe
Q psy16377 1083 EAAEASRRVILVLTKNFL-QTEWSRSDF---LIEAAEAS-RRVILVL 1124 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~-~~~w~~~~~---i~~~i~~s-rr~i~vl 1124 (1344)
+||+.||++|+|+|+||+ +++||..|. +..+++.. +++|.|.
T Consensus 63 ~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~ 109 (159)
T 1t3g_A 63 RCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIE 109 (159)
T ss_dssp HHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 688999999999999998 999998876 33444544 4555553
No 173
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=96.92 E-value=0.00011 Score=73.64 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=32.2
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHH---HHHH-hcccEEEEe
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLI---EAAE-ASRRVILVL 1124 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~---~~i~-~srr~i~vl 1124 (1344)
+||+.||++|+|+|+||++++||..|.-. ++++ ..+++|.|+
T Consensus 56 ~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~ 101 (149)
T 1fyx_A 56 DSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILIL 101 (149)
T ss_dssp HHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEE
T ss_pred HHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 68899999999999999999999987622 2334 344566666
No 174
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.44 E-value=0.0035 Score=65.35 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=33.1
Q ss_pred cCCCCCcEEEccCC-CCC-----ccchhhcCCCCccEEEccCCCCCccCcch----hcCCCCCcEEEcccCCC
Q psy16377 407 KNCSALKELDLSSN-AIV-----EIPSALSELPFLKTLDLGENQISKIENGS----FKNLQQLTDLRLVDNNI 469 (1344)
Q Consensus 407 ~~l~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l 469 (1344)
.+-+.|++|+|++| .+. .+.+++..-+.|+.|+|++|.+.+..... +..-+.|+.|+|+.|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 33455666666653 544 23445555566666666666666543322 22344455555555555
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.33 E-value=0.0035 Score=65.29 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCCccEEEcCCC-cCcccc----cccccCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCCccccCC---
Q psy16377 480 LPSLEVLNLSKN-KIHQIE----IGTFEKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLVWFDYA--- 546 (1344)
Q Consensus 480 l~~L~~L~Ls~n-~i~~~~----~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 546 (1344)
-+.|+.|+|++| .|.... ..++...+.|+.|+|++|.+.+ |...+.....|+.|+|+.|.|..-...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 443221 1233444555555555555542 344555556666666666665432211
Q ss_pred ---CcCCCccEEEcCCCcCCCCCc------cccccCCCcccEEECCCCcc
Q psy16377 547 ---MVPGNLKWLDIHGNYISSLNN------YYEIKDGLSIKNLDASHNRI 587 (1344)
Q Consensus 547 ---~lp~~L~~L~Ls~n~l~~l~~------~~~l~~~~~L~~L~Ls~N~l 587 (1344)
....+|+.|+|++|....++. ...+...++|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 112345555555432212221 11233445666666665543
No 176
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=95.96 E-value=0.0017 Score=65.69 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=46.3
Q ss_pred HHHh-hhheeeeeeecccccCCccchhHHHHHHH-----hcccEEEEecccc-------h----hhhh----hHHHHHHH
Q psy16377 1083 EAAE-ASRRVILVLTKNFLQTEWSRSDFLIEAAE-----ASRRVILVLTKNF-------L----QTEW----SRSDFRSA 1141 (1344)
Q Consensus 1083 ~~~~-~s~~~i~vls~~~~~~~w~~~~~i~~~i~-----~srr~i~vls~~f-------~----~~~w----~~~e~~~a 1141 (1344)
+||+ .||++|+|+|+||++++||+.|. ..|++ ..+++|.|+-... + .-.| ....||..
T Consensus 66 ~~I~~~Sr~~IvVlS~~y~~S~wc~~El-~~a~~~~~~~~~~~vIpV~~~~~~~~lp~ll~~~~~~~~~~~~~~~~FW~k 144 (160)
T 2js7_A 66 ELIEKRCRRMVVVVSDDYLQSKECDFQT-KFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWTR 144 (160)
T ss_dssp GGHHHHEEEEEEECCHHHHHSHHHHHHH-HHHHHHCTTHHHHTEEEEESSCCCCCCCTTTSCSSCEETTCTTTCSSHHHH
T ss_pred HHHHHhCCEEEEEECcchhcCHHHHHHH-HHHHHHHHccCCCEEEEEEEcccchhhHHHHhceEEEECCCCCCChHHHHH
Confidence 6888 79999999999999999998765 33333 2456777663221 1 1224 44678888
Q ss_pred HHHHHhcC
Q psy16377 1142 IHEALTTK 1149 (1344)
Q Consensus 1142 ~~~~l~~~ 1149 (1344)
++.+|...
T Consensus 145 L~~al~~~ 152 (160)
T 2js7_A 145 LAKALSLP 152 (160)
T ss_dssp HHHHHHSC
T ss_pred HHHHcCCc
Confidence 88888764
No 177
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=95.91 E-value=0.00056 Score=68.04 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=31.7
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHHHHHHh----cccEEEEe
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEA----SRRVILVL 1124 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~----srr~i~vl 1124 (1344)
+||+.||++|+|+|+||++++||+.|. ..|++. .+|+|.|+
T Consensus 60 ~aI~~Sr~~I~VlS~~y~~S~wc~~El-~~al~~~~~~~~~vIpv~ 104 (146)
T 3ub2_A 60 QALSSSHCRVLLITPGFLQDPWCKYQM-LQALTEAPGAEGCTIPLL 104 (146)
T ss_dssp CTTCCEEEEEEEECHHHHHCHHHHHHH-HHHHHTSSSSSSEEEEEE
T ss_pred HHHHhCCEEEEEECcccccCHHHHHHH-HHHHHHHhhcCCcEEEEE
Confidence 578999999999999999999998765 444443 34666555
No 178
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=93.84 E-value=0.029 Score=58.05 Aligned_cols=42 Identities=19% Similarity=0.544 Sum_probs=31.6
Q ss_pred HHHhhhheeeeeeecccccCCccchhH--HHHHHHh-cccEEEEe
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDF--LIEAAEA-SRRVILVL 1124 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~--i~~~i~~-srr~i~vl 1124 (1344)
+||+.||..|+|+|+||..+.||..|- |.++.+. .+++|+-|
T Consensus 85 ~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPI 129 (204)
T 3ozi_A 85 RAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPI 129 (204)
T ss_dssp HHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCE
T ss_pred HHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEE
Confidence 789999999999999999999998865 4444443 23444433
No 179
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=93.35 E-value=0.05 Score=55.27 Aligned_cols=49 Identities=14% Similarity=0.413 Sum_probs=35.4
Q ss_pred HHHhhhheeeeeeecccccCCccchhH--HHHHHHhcccEEEEe----cccchhh
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDF--LIEAAEASRRVILVL----TKNFLQT 1131 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~--i~~~i~~srr~i~vl----s~~f~~~ 1131 (1344)
+||+.||..|+|+|+||..+.||..|- |.++.+...++|+-| .|.-++.
T Consensus 58 ~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~ 112 (176)
T 3jrn_A 58 SPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW 112 (176)
T ss_dssp -CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHH
T ss_pred HHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhh
Confidence 578899999999999999999998875 445555445555554 4554543
No 180
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=91.59 E-value=0.043 Score=55.04 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=26.2
Q ss_pred HHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus 1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
+|++.|+.+|+|+|+||+++.||..|. ..+++
T Consensus 69 ~ai~~s~~~i~v~S~~y~~S~wc~~El-~~~~~ 100 (154)
T 3h16_A 69 KGLGSSRFGIVVLSTHFFKKEWPQKEL-DGLFQ 100 (154)
T ss_dssp HHHTSEEEEEEEEEHHHHTTCCCHHHH-HHHTC
T ss_pred HHHHhCcEEEEEeCcchhcChHHHHHH-HHHHH
Confidence 467889999999999999999999754 44443
No 181
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.93 E-value=0.23 Score=45.53 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=34.9
Q ss_pred CCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccc
Q psy16377 786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836 (1344)
Q Consensus 786 ~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~ 836 (1344)
|..++.|...+|.++.+|+.+.|-. .++.|...+|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 4556677777777777777777765 3667777777777777777776544
No 182
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.55 E-value=0.52 Score=43.09 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=26.7
Q ss_pred CcccccccchhcCCCccceeecccccccccCcccccCccccceeecccc
Q psy16377 811 SQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN 859 (1344)
Q Consensus 811 n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 859 (1344)
..++.|...+|.++++|+.+.|-. .++.|....|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 345555566666666666665554 255555555555555555555443
No 183
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=35.70 E-value=40 Score=33.78 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=39.9
Q ss_pred hHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377 1108 DFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus 1108 ~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
..+.+-|+.|..+|++|+++-..+.|-++|++.|. ++...++|.|-.+
T Consensus 71 rrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai----~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 71 PRLHTRLDNSKNIILFLSSITANSRALREEMNYGI----GTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHT----TTTCCCEEEEETT
T ss_pred HHHHHHHHhcCcEEEEEecCccccchhHHHHHHHH----HhcCCcEEEEECC
Confidence 46888999999999999999999999999997665 3466778888544
Done!