RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16377
(1344 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 89.1 bits (221), Expect = 1e-17
Identities = 128/456 (28%), Positives = 195/456 (42%), Gaps = 81/456 (17%)
Query: 66 SFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKK---------L 115
S N+ SLE L +++ +LV ++P ++ +++LK + + NL + + L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241
Query: 116 DLV--------PGSLDGLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDID 166
DLV P SL L+ LQ L + + + I +F SL + +L+LS NS+
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSL---- 296
Query: 167 TLGFAVRRASAESNSGEKIECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN 225
SGE E + +L IL L N T +T RLQ L L +
Sbjct: 297 --------------SGEIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWS 341
Query: 226 NEISQIAPNAFVALSSLRILNISSNHLVS-LPEGLFSSCRDISEIYAQKNSL---VELSR 281
N+ S P ++L +L++S+N+L +PEGL SS + ++ NSL + S
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN-LFKLILFSNSLEGEIPKSL 400
Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT-RIDAKTFKDLVFL 340
G L ++ L N S E T + L+ L++SNN L RI+++ + D+ L
Sbjct: 401 GACRSLRRV---RLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKW-DMPSL 454
Query: 341 QRLDL-RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
Q L L RN G + D G L L LS N
Sbjct: 455 QMLSLARNKFFGGLPD--------------------------SFGSKRLENLDLSRNQFS 488
Query: 400 NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+ + S L +L LS N + EIP LS L +LDL NQ+S SF +
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L+ L L N + L + SL +N+S N +H
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584
Score = 86.4 bits (214), Expect = 6e-17
Identities = 128/506 (25%), Positives = 206/506 (40%), Gaps = 79/506 (15%)
Query: 124 GLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
L +Q +N+S++ + I DD+F + ++++ LNLS N+ G
Sbjct: 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI----------- 139
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
+L LDLS+N L + + I F L+ L L N + PN+ L+SL
Sbjct: 140 --------PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190
Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
L ++SN LV + + IY N+L L L LDL N+L+
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250
Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362
++ L L L L N+L+ + L L LDL +NS+ + L
Sbjct: 251 P--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTL----SNNLLVNIDSKAFKNCSALKELDLS 418
NL ++L N + T + L L +L + SN I K+ + L LDLS
Sbjct: 309 NLEILHLFSN---NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLS 364
Query: 419 SNAIV-------------------------EIPSALSELPFLKTLDLGENQISKIENGSF 453
+N + EIP +L L+ + L +N S F
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424
Query: 454 KNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
L + L + +NN+ G ++S +++PSL++L+L++NK + +KRL + L
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDL 482
Query: 513 DSN-FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSL 565
N F + L++L+ L LSEN L +P L LD+ N +S
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLS----GEIPDELSSCKKLVSLDLSHNQLSG- 537
Query: 566 NNYYEIKDGLS----IKNLDASHNRI 587
+I S + LD S N++
Sbjct: 538 ----QIPASFSEMPVLSQLDLSQNQL 559
Score = 68.7 bits (168), Expect = 2e-11
Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 36/247 (14%)
Query: 408 NCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLV 465
N S + +DLS I +I SA+ LP+++T++L NQ+S I + F L L L
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 466 DNNI-GNLSSGMLYELPSLEVLNLSKN----KIHQIEIGTFEKNKRLAAIRLDSNFLT-D 519
+NN G++ G +P+LE L+LS N +I +IG+F L + L N L
Sbjct: 127 NNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPN-DIGSFS---SLKVLDLGGNVLVGK 179
Query: 520 INGVFTYLAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSLNNYYEIKD 573
I T L L +L L+ N LV +P +LKW+ + N +S YEI
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGG 234
Query: 574 GLSIKNLDASHNRILEISELSIPNS------VEVLFINNNLIKSVKPHTFFDKSNLARVD 627
S+ +LD +N + IP+S ++ LF+ N + P + F L +D
Sbjct: 235 LTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290
Query: 628 IYANDIT 634
+ N ++
Sbjct: 291 LSDNSLS 297
Score = 65.6 bits (160), Expect = 2e-10
Identities = 90/325 (27%), Positives = 137/325 (42%), Gaps = 14/325 (4%)
Query: 201 NKLRTLGDYSGI--TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-SLPE 257
N + + GI R+ ++ L IS +A L ++ +N+S+N L +P+
Sbjct: 52 NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111
Query: 258 GLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLI-R 315
+F++ + + N+ + RG LE LDLS+N LS ++ IG
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE---TLDLSNNMLSGEIPND---IGSFSS 165
Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
L +L+L N L + +L L+ L L +N + + +L IYL N +
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225
Query: 376 HITAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELP 433
+ GL L+ L L NNL I S + N L+ L L N + IP ++ L
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284
Query: 434 FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
L +LDL +N +S LQ L L L NN L LP L+VL L NK
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344
Query: 494 HQIEIGTFEKNKRLAAIRLDSNFLT 518
K+ L + L +N LT
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLT 369
Score = 32.5 bits (74), Expect = 2.0
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 27/206 (13%)
Query: 797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
G K + +L ++ +Q + + LS L L L N ++ E + +KL L L
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATL 916
N++ +F+ + L L L N+L +L L +V + +N S L
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS---L 587
Query: 917 QELQTWIIDNSNKVKDGLDISCVIDESS--PPIRKEIDLNSTTCTEYYATSSVIASIMVS 974
++ N++ V G C D +S PP ++ + T +Y T ++ A
Sbjct: 588 PSTGAFLAINASAVA-GNIDLCGGDTTSGLPPCKR---VRKTPSWWFYITCTLGA----- 638
Query: 975 DYLPFMIITFLMFLVFLILIIFMFVF 1000
+ L L+ F FVF
Sbjct: 639 -------------FLVLALVAFGFVF 651
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 85.8 bits (212), Expect = 2e-17
Identities = 88/327 (26%), Positives = 140/327 (42%), Gaps = 16/327 (4%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
L L + L+R+ + + LD N L+L L ++ L+ NR+
Sbjct: 58 TLLLLPSSLSRLLSLDLLSPSGISSLDGSENL---------LNLLPLPSLDLNLNRLRSN 108
Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKT 437
+ L L L+ L L NN + +I S LKELDLS N I +PS L LP LK
Sbjct: 109 ISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167
Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
LDL N +S + NL L +L L N I +L + L +LE L+LS N I ++
Sbjct: 168 LDLSFNDLSDLPKLLS-NLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL- 224
Query: 498 IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
+ + K L+ + L +N L D+ L+ L L+LS N + NL+ LD+
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284
Query: 558 HGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTF 617
GN SL+N + L + + + + NS+ + + ++ P
Sbjct: 285 SGN---SLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341
Query: 618 FDKSNLARVDIYANDITKLDLTALRLK 644
+L + N + + +L +K
Sbjct: 342 SILESLNNLWTLDNALDESNLNRYIVK 368
Score = 64.2 bits (156), Expect = 2e-10
Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 12/338 (3%)
Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD 192
I+ + S + V + + + + + + ++ S S +
Sbjct: 33 INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
L + L N R + S + + L +L L+NN I+ I P + S+L+ L++S N +
Sbjct: 93 LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
SLP L + ++ + N L +L + L L L LDLS N +S +
Sbjct: 153 ESLPSPL-RNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLPPEIEL--- 207
Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
L L L+LSNN + + + +L L L+L NN + + ++ +L NL T+ LS N
Sbjct: 208 LSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNN 265
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
+I I++ L L +L LS N L N L L + + L
Sbjct: 266 QISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLL--ELLLNLLLTLKALELKLN 321
Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
L ++ N + + L+ L +L +DN +
Sbjct: 322 SILLNNNILSNGETSSPE-ALSILESLNNLWTLDNALD 358
Score = 60.8 bits (147), Expect = 3e-09
Identities = 74/323 (22%), Positives = 117/323 (36%), Gaps = 65/323 (20%)
Query: 91 FSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
G NL L + ++ L L L L++ ++NI I + +
Sbjct: 83 LDGSENLLNLLPLPSLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKS 140
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
N++ L+LS N I + + + +L+ LDLS N L L
Sbjct: 141 NLKELDLSDNKIESLPSPLRNL------------------PNLKNLDLSFNDLSDLPKLL 182
Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
L NL L N+IS + P + LS+L L++S+N ++ L L
Sbjct: 183 SNLS--NLNNLDLSGNKISDLPPEIEL-LSALEELDLSNNSIIELLSSLS---------- 229
Query: 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI-ILNLSNNELTRI 329
L+ L L+LS+N L D IG + + L+LSNN+++ I
Sbjct: 230 ---------------NLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQISSI 270
Query: 330 DAKTFKDLVFLQRLDLRNNSI----------GYIEDNAFLSLYNLHTIYLSENRIHHITA 379
+ L L+ LDL NS+ + + L L + L N I
Sbjct: 271 SS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328
Query: 380 HLFNGLYVLSKLTLSNNLLVNID 402
L NG + L N+
Sbjct: 329 ILSNGETSSPEALSILESLNNLW 351
Score = 34.2 bits (78), Expect = 0.46
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 15/178 (8%)
Query: 757 NTNVVDCSEQQISTVPPRI--PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE 814
N +D S+ +I ++P + + ++ L N +P + N+ +L ++ ++I
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKIS 199
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALIS 874
+ + LS+L+ L L NN I NL+ LS L L N++E + + L +
Sbjct: 200 DLPPEI-ELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPE-SIGNLSN 256
Query: 875 LQVLQLDGNR---------LKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
L+ L L N+ L + R DL+ NS+ + L L L T
Sbjct: 257 LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 79.7 bits (197), Expect = 1e-15
Identities = 72/250 (28%), Positives = 100/250 (40%), Gaps = 44/250 (17%)
Query: 283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIR----LIILNLSNNELTRIDAKT---- 333
L KL L VL L N L + +R L L LS NE RI
Sbjct: 18 LLPKLLCLQVLRLEGNTLGEEAA---KALASALRPQPSLKELCLSLNETGRIPRGLQSLL 74
Query: 334 --FKDLVFLQRLDLRNNSIGYIEDN-----AFLSLYNLHTIYLSENRI-HHITAHLFNGL 385
LQ LDL +N++G D + L +L + L+ N + L GL
Sbjct: 75 QGLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132
Query: 386 ----YVLSKLTLSNNLLVNID----SKAFKNCSALKELDLSSNAIVE--IPS---ALSEL 432
L KL L N L +KA + LKEL+L++N I + I + L
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192
Query: 433 PFLKTLDLGENQI----SKIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPSL 483
L+ LDL N + + + +L+ L L L DNN+ + L+S +L SL
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252
Query: 484 EVLNLSKNKI 493
L+LS N I
Sbjct: 253 LTLSLSCNDI 262
Score = 52.4 bits (126), Expect = 9e-07
Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 48/257 (18%)
Query: 192 DLRILDLSHNKLRTLGDY-----SGITKFRRLQNLHLENNEISQIAPNAFVAL---SSLR 243
L+ L LS N+ + G+TK LQ L L +N + +L SSL+
Sbjct: 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111
Query: 244 ILNISSN-----HLVSLPEGLFSSCRDISEIYAQKNSL-VELSR---GLFHKLEQLLVLD 294
L +++N L L +GL + ++ +N L L L+
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171
Query: 295 LSSNHLSSNHIDETTFIGL---IRLIILNLSNNELTRIDAK----TFKDLVFLQRLDLRN 347
L++N + I GL L +L+L+NN LT A T L L+ L+L +
Sbjct: 172 LANNGIGDAGI-RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230
Query: 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF- 406
N++ L + LS N L L+LS N + + +K
Sbjct: 231 NNLTD------AGAAALASALLSPNI-------------SLLTLSLSCNDITDDGAKDLA 271
Query: 407 ---KNCSALKELDLSSN 420
+L ELDL N
Sbjct: 272 EVLAEKESLLELDLRGN 288
Score = 42.0 bits (99), Expect = 0.001
Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 56/210 (26%)
Query: 53 DATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVD-VFSGLR----NLKRLTINTRNL 107
D + D +S SL+ELK++N L + + + GL+ L++L + L
Sbjct: 90 DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149
Query: 108 QWDKS-------------KKLDLVPGSL--DGLR----------ELQVLNISSSNIKSIS 142
+ K+L+L + G+R L+VL+++++ +
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209
Query: 143 DDVFC----SLANIQTLNLSRNSIRDIDTLGFA---------VRRASAESNSGEKIECSG 189
SL +++ LNL N++ D A + S N I G
Sbjct: 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN---DITDDG 266
Query: 190 GMD----------LRILDLSHNKLRTLGDY 209
D L LDL NK G
Sbjct: 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296
Score = 30.8 bits (70), Expect = 4.6
Identities = 32/142 (22%), Positives = 44/142 (30%), Gaps = 26/142 (18%)
Query: 817 LNQTFNGLSSLQVLHLENNLITHF-------YGYEFDNLEKLSELYLQENRIEYIA---- 865
L + L+ L+L NN I NLE L L N +
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD---LNNNGLTDEGASAL 213
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYLGNNPFSCS-CATL--- 916
T +L SL+VL L N L A L + N L + L N + L
Sbjct: 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273
Query: 917 ---QELQTWIIDNSNKVKDGLD 935
+E + NK +
Sbjct: 274 LAEKESLLELDLRGNKFGEEGA 295
>gnl|CDD|216585 pfam01582, TIR, TIR domain. The Toll/interleukin-1 receptor (TIR)
homology domain is an intracellular signalling domain
found in MyD88, interleukin 1 receptor and the Toll
receptor. It contains three highly-conserved regions, and
mediates protein-protein interactions between the
Toll-like receptors (TLRs) and signal-transduction
components. TIR-like motifs are also found in plant
proteins thought to be involved in resistance to disease.
When activated, TIR domains recruit cytoplasmic adaptor
proteins MyD88 and TOLLIP (Toll interacting protein). In
turn, these associate with various kinases to set off
signalling cascades.
Length = 135
Score = 73.1 bits (180), Expect = 4e-15
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 43/165 (26%)
Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
D + + ++ ELE +LC+ RD ++
Sbjct: 8 KDDRDTFVSHLLKELEEK--GIKLCIDDRDE--------------------LPGESIL-- 43
Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
+ L EA E SRR I++ + N+ +EW + + AL K++
Sbjct: 44 -------------ENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALEGGGKKVI 90
Query: 1155 LVEENIVPEAESDIELKPYLKSCMK-IRW-----GEKRFWERLRY 1193
L V ++ + + K+ +K ++W + RFW++ Y
Sbjct: 91 LPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance.
Length = 140
Score = 68.1 bits (167), Expect = 3e-13
Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 43/165 (26%)
Query: 1039 EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKN 1098
E V ++ L Y LC+ D L+ + EA E SR I+VL+ N
Sbjct: 12 EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE------EIDEAIEKSRIAIVVLSPN 65
Query: 1099 FLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEE 1158
+ ++EW L E +A+ AL +++ +
Sbjct: 66 YAESEWC----LDE-------------------------LVAALENALEEGGLRVIPIFY 96
Query: 1159 NIVPEAESDIELKPYLKSCMKIRWGE------KRFWERLRYAMPT 1197
++P + + K + + ++FW++ YA+P+
Sbjct: 97 EVIPSDV--RKQPGKFRKVFKKNYLKWPEDEKEQFWKKALYAVPS 139
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 63.3 bits (155), Expect = 1e-12
Identities = 26/59 (44%), Positives = 32/59 (54%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
L+ LDL NN + I D AF L NL + LS N + I+ F+GL L L LS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 56.0 bits (136), Expect = 5e-10
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
NL ++ LS NR+ I F GL L L LS N L +I +AF +L+ LDLS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 54.1 bits (131), Expect = 3e-09
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350
LDLS+N L+ I + F GL L +L+LS N LT I + F L L+ LDL N++
Sbjct: 4 SLDLSNNRLT--VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.5 bits (127), Expect = 9e-09
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374
L L+LSNN LT I FK L L+ LDL N++ I AF L +L ++ LS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.5 bits (127), Expect = 9e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
LK+LDL N+++ I +G+FK L L L L NN+ ++S LPSL L+LS N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.2 bits (126), Expect = 1e-08
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQI 445
L L LSNN L I AFK LK LDLS N + I A S LP L++LDL N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.2 bits (126), Expect = 1e-08
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 217 RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL 276
L++L L NN ++ I AF L +L++L++S N+L S+ FS + + N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 51.8 bits (125), Expect = 2e-08
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 412 LKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
LK LDLS+N + IP A LP LK LDL N ++ I +F L L L L NN+
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 50.6 bits (122), Expect = 4e-08
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
+L+ L L NN +T F L L L L N + I+ F+ L SL+ L L GN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.9 bits (120), Expect = 9e-08
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
SL ++N+++ VI + F GL +L+VL L N +T F L L L L N +
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.9 bits (120), Expect = 9e-08
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
L+ LDLS+N+L + D + L+ L L N ++ I+P AF L SLR L++S N+L
Sbjct: 2 LKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 48.7 bits (117), Expect = 2e-07
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
+L+ L++S+N L +P+G F ++ + N+L +S F L L LDLS N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 48.3 bits (116), Expect = 3e-07
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L L L +N + + G LP+L+VL+LS N + I F L ++ L N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 47.2 bits (113), Expect = 8e-07
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 266 ISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE 325
+ + N L + G F L L VLDLS N+L+ I F GL L L+LS N
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT--SISPEAFSGLPSLRSLDLSGNN 59
Query: 326 L 326
L
Sbjct: 60 L 60
Score = 44.8 bits (107), Expect = 5e-06
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
+ L N IP+ F G N+ L ++ + + I + F+GL SL+ L L N +
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.8 bits (107), Expect = 5e-06
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 31/91 (34%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+L+ L +SN +L +P F GL N L+VL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPN-------------------------------LKVL 29
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
++S +N+ SIS + F L ++++L+LS N++
Sbjct: 30 DLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 43.3 bits (103), Expect = 1e-05
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
L L L NR+ I +G F L +L+VL L GN L S + LR + L N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 42.5 bits (101), Expect = 3e-05
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
+L+ L+LS N++ I G F+ L + L N LT I+ F+ L L L+LS N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.8 bits (99), Expect = 6e-05
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIEC 187
L+ L++S++ + I D F L N++ L+LS N++ I F+
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---------------- 45
Query: 188 SGGMD-LRILDLSHNKL 203
G+ LR LDLS N L
Sbjct: 46 --GLPSLRSLDLSGNNL 60
Score = 36.8 bits (86), Expect = 0.004
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI 102
+ I +F+ + +L+ L +S L + + FSGL +L+ L +
Sbjct: 13 TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55
Score = 32.1 bits (74), Expect = 0.16
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 576 SIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI 633
++K+LD S+NR+ I + + +++VL ++ N + S+ P F +L +D+ N++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 28.3 bits (64), Expect = 4.1
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 598 SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
+++ L ++NN + + F NL +D+ N++T + A
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF 44
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 49.1 bits (118), Expect = 8e-07
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
I E F G L + L ++ LT I + F + L + + +S+ I + AF + +L
Sbjct: 25 IGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITI-PSSLTSIGEYAFSNCSSL 82
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
+I + N + I ++ F+ L +T+ +++ I AF NCS+LK
Sbjct: 83 TSITIPSN-LTTIGSYAFSNCS-LKSITIPSSVT-TIGDYAFSNCSSLK 128
Score = 46.0 bits (110), Expect = 9e-06
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
I D AF + +L +I + + + I + F+G L +TL ++L +I S AF NCS+
Sbjct: 2 SIGDYAFYNC-SLTSITIPSS-VTSIGEYAFSGCTSLKSITLPSSL-TSIGSYAFYNCSS 58
Query: 412 LKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKN 455
L + + S+ + I A S L ++ + N ++ I + +F N
Sbjct: 59 LTSITIPSS-LTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN 101
Score = 35.2 bits (82), Expect = 0.049
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
+I AF NCS L + + S+ ++ I +F L
Sbjct: 2 SIGDYAFYNCS-LTSITIPSS------------------------VTSIGEYAFSGCTSL 36
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
+ L +++ ++ S Y SL + + + + I F L +I + SN LT
Sbjct: 37 KSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITIPSN-LTT 93
Query: 520 IN 521
I
Sbjct: 94 IG 95
Score = 33.3 bits (77), Expect = 0.23
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 29/135 (21%)
Query: 135 SSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLR 194
S++ SI + F +++++ L +S+ I + F CS L
Sbjct: 19 PSSVTSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFY--------------NCSS---LT 60
Query: 195 ILDLSHNKLRTLGDYSGITKFRR---LQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
+ + + L ++G+Y+ F L ++ + +N ++ I AF + SL+ + I S+
Sbjct: 61 SITIP-SSLTSIGEYA----FSNCSSLTSITIPSN-LTTIGSYAF-SNCSLKSITIPSS- 112
Query: 252 LVSLPEGLFSSCRDI 266
+ ++ + FS+C +
Sbjct: 113 VTTIGDYAFSNCSSL 127
Score = 33.3 bits (77), Expect = 0.29
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 790 KTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLE 849
+I ++ F ++ S+ + +S + I F+G +SL+ + L ++L + Y F N
Sbjct: 1 TSIGDYAFYN-CSLTSITIPSS-VTSIGEYAFSGCTSLKSITLPSSLTS-IGSYAFYNCS 57
Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNN 907
L+ + + + + I F+ SL + + N L + AF +N L+ + + ++
Sbjct: 58 SLTSITIPSS-LTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAF---SNCSLKSITIPSS 112
Score = 32.5 bits (75), Expect = 0.46
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 201 NKLRTLGDY--SGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258
+ + ++G+Y SG T L+++ L ++ ++ I AF SSL + I S+ L S+ E
Sbjct: 20 SSVTSIGEYAFSGCTS---LKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEY 74
Query: 259 LFSSCRDISEIY 270
FS+C ++ I
Sbjct: 75 AFSNCSSLTSIT 86
Score = 29.0 bits (66), Expect = 8.0
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 787 NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
++ +I ++ F ++ S+ + +S + I F+ SSL + + +NL T Y F
Sbjct: 43 SSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITIPSNLTT-IGSYAFS 100
Query: 847 NLEKLSELYLQENRIEYIANGTFNALISL 875
N L + + + + I + F+ SL
Sbjct: 101 NC-SLKSITIPSS-VTTIGDYAFSNCSSL 127
>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain.
Length = 33
Score = 41.1 bits (97), Expect = 5e-05
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATH 781
CP C+C VDCS + ++ VP +P D T
Sbjct: 2 CPAPCNCSG------TAVDCSGRGLTEVPLDLPPDTTL 33
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 40.2 bits (95), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
L+ LDLS+N I ++P LS LP L+TLDL N+I+ +
Sbjct: 3 LETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 37.1 bits (87), Expect = 0.002
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
L+ L++S++ I + +L N++TL+LS N I D+ L
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPL 41
Score = 34.8 bits (81), Expect = 0.011
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
L LDLS+N++ L ++ L+ L L N+I+ ++P
Sbjct: 3 LETLDLSNNQITDL---PPLSNLPNLETLDLSGNKITDLSP 40
Score = 34.8 bits (81), Expect = 0.012
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
L+TLDL NQI+ + NL L L L N I +LS
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 34.8 bits (81), Expect = 0.013
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
L L L +N I +L L LP+LE L+LS NKI +
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 32.5 bits (75), Expect = 0.073
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 217 RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPE 257
L+ L L NN+I+ + L +L L++S N + L
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 32.5 bits (75), Expect = 0.075
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
L L+LSNN++T + +L L+ LDL N I +
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 32.1 bits (74), Expect = 0.10
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA 379
L+ LDL NN I + +L NL T+ LS N+I ++
Sbjct: 3 LETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 31.3 bits (72), Expect = 0.17
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS 427
L L LSNN + ++ N L+ LDLS N I ++
Sbjct: 3 LETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.38
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV 523
+LE L+LS N+I ++ L + L N +TD++ +
Sbjct: 1 TNLETLDLSNNQIT--DLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 30.2 bits (69), Expect = 0.53
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
NL+ LD+ N I+ L + + +++ LD S N+I ++S LS
Sbjct: 2 NLETLDLSNNQITDLP---PLSNLPNLETLDLSGNKITDLSPLS 42
Score = 29.8 bits (68), Expect = 0.73
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAF 891
L L L N+I + + L +L+ L L GN++
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPL 41
Score = 29.4 bits (67), Expect = 0.87
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
+++ LD S+N+I ++ LS ++E L ++ N I + P
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 29.0 bits (66), Expect = 1.4
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN 866
+L+ L L NN IT NL L L L N+I ++
Sbjct: 2 NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 27.1 bits (61), Expect = 6.3
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 19/56 (33%)
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL 206
N++TL+LS N I D+ L L LDLS NK+ L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPN-------------------LETLDLSGNKITDL 38
Score = 27.1 bits (61), Expect = 6.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS 403
NL T+ LS N+I + + L L L LS N + ++
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 27.1 bits (61), Expect = 7.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
N+ +L ++N+QI + + L +L+ L L N IT
Sbjct: 1 TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDL 38
Score = 26.7 bits (60), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA 331
L LDLS+N ++ + L L L+LS N++T +
Sbjct: 2 NLETLDLSNNQITD--LPP--LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.8 bits (95), Expect = 0.005
Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+++E+++S ++ ELP + S L++L L N K+ +P +L EL+ L
Sbjct: 242 TIQEMELSINRITELPERLPSALQSLD-LFHN----------KISCLPENLP--EELRYL 288
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSGEKIECSGG 190
++ ++I+++ + I LN+ NS+ + +TL ++ A N+ + S
Sbjct: 289 SVYDNSIRTLPAHLPSG---ITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP 345
Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
+L++LD+S N++ L + T + L + N ++ + N AL +I+ S N
Sbjct: 346 PELQVLDVSKNQITVLPETLPPT----ITTLDVSRNALTNLPENLPAAL---QIMQASRN 398
Query: 251 HLVSLPEGL 259
+LV LPE L
Sbjct: 399 NLVRLPESL 407
Score = 39.7 bits (92), Expect = 0.012
Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 33/256 (12%)
Query: 198 LSHNKLRTLGDYSGITKF-----RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
L +NK G+T ++ L L+NNE+ + N +++ L +SN L
Sbjct: 176 LKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQL 232
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
S+P L + I E+ N + EL L L+ L + + L N +E
Sbjct: 233 TSIPATLPDT---IQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEE----- 284
Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
L L++ +N + + A + L++++NS+ + + L T+ EN
Sbjct: 285 ---LRYLSVYDNSIRTLPAHLPSGIT---HLNVQSNSLTALPETLPP---GLKTLEAGEN 335
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
+ + A L L VL +S N + + + LD+S NA+ +P L
Sbjct: 336 ALTSLPASLPPELQVLD---VSKNQITVLPETL---PPTITTLDVSRNALTNLPENLPAA 389
Query: 433 PFLKTLDLGENQISKI 448
L+ + N + ++
Sbjct: 390 --LQIMQASRNNLVRL 403
Score = 34.3 bits (78), Expect = 0.56
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 353 IEDNAFLSL-----YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK 407
+++N SL N+ T+Y + N++ I A L + + ++ LS N + + +
Sbjct: 206 LDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPD---TIQEMELSINRITELPERL-- 260
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK-------------IENGSFK 454
SAL+ LDL N I +P L E L+ L + +N I +++ S
Sbjct: 261 -PSALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT 317
Query: 455 NLQQ-----LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
L + L L +N + +L + + P L+VL++SKN+I
Sbjct: 318 ALPETLPPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQI 358
Score = 34.3 bits (78), Expect = 0.59
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 23/197 (11%)
Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
L L +N + +P L +KTL NQ++ I + + Q +L + N I L
Sbjct: 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIP-ATLPDTIQEMELSI--NRITELPE 258
Query: 475 GMLYELPS-LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL-AQLLW 532
LPS L+ L+L NKI + E+ + L+ I + +L + +
Sbjct: 259 ----RLPSALQSLDLFHNKISCLPENLPEELRYLSVYD------NSIRTLPAHLPSGITH 308
Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
LN+ N L +P LK L+ N ++SL ++ LD S N+I + E
Sbjct: 309 LNVQSNSLTALP-ETLPPGLKTLEAGENALTSLPASLPP----ELQVLDVSKNQITVLPE 363
Query: 593 LSIPNSVEVLFINNNLI 609
++P ++ L ++ N +
Sbjct: 364 -TLPPTITTLDVSRNAL 379
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 34.2 bits (80), Expect = 0.014
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 239 LSSLRILNISSNHLVSLPEGLFSS 262
L +LR L++S+N L SLP G F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.6 bits (68), Expect = 0.58
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 480 LPSLEVLNLSKNKIHQIEIGTFE 502
LP+L L+LS N++ + G F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 28.9 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 432 LPFLKTLDLGENQISKIENGSFKN 455
LP L+ LDL NQ+S + G+F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.9 bits (61), Expect = 5.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 848 LEKLSELYLQENRIEYIANGTFN 870
L L EL L N++ + G F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 26.5 bits (60), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 193 LRILDLSHNKLRTL 206
LR LDLS+N+L +L
Sbjct: 4 LRELDLSNNQLSSL 17
Score = 26.5 bits (60), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 218 LQNLHLENNEISQIAPNAF 236
L+ L L NN++S + P AF
Sbjct: 4 LRELDLSNNQLSSLPPGAF 22
Score = 26.5 bits (60), Expect = 7.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 361 LYNLHTIYLSENRIHHITAHLFNG 384
L NL + LS N++ + F G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 34.2 bits (80), Expect = 0.014
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 239 LSSLRILNISSNHLVSLPEGLFSS 262
L +LR L++S+N L SLP G F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.6 bits (68), Expect = 0.58
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 480 LPSLEVLNLSKNKIHQIEIGTFE 502
LP+L L+LS N++ + G F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 28.9 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 432 LPFLKTLDLGENQISKIENGSFKN 455
LP L+ LDL NQ+S + G+F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.9 bits (61), Expect = 5.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 848 LEKLSELYLQENRIEYIANGTFN 870
L L EL L N++ + G F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 26.5 bits (60), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 193 LRILDLSHNKLRTL 206
LR LDLS+N+L +L
Sbjct: 4 LRELDLSNNQLSSL 17
Score = 26.5 bits (60), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 218 LQNLHLENNEISQIAPNAF 236
L+ L L NN++S + P AF
Sbjct: 4 LRELDLSNNQLSSLPPGAF 22
Score = 26.5 bits (60), Expect = 7.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 361 LYNLHTIYLSENRIHHITAHLFNG 384
L NL + LS N++ + F G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 39.0 bits (91), Expect = 0.017
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 210 SGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-SLPEGL 259
+ I+K R LQ+++L N I P + +++SL +L++S N S+PE L
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Score = 36.7 bits (85), Expect = 0.088
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS 446
L + LS N + + + ++L+ LDLS N+ IP +L +L L+ L+L N +S
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Score = 35.9 bits (83), Expect = 0.14
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 412 LKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSF-KNLQQLTDLRLVDNNI 469
L+ ++LS N+I IP +L + L+ LDL N NGS ++L QLT LR+++ N
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF----NGSIPESLGQLTSLRILNLN- 498
Query: 470 GNLSSGMLYELPS 482
GN SG +P+
Sbjct: 499 GNSLSG---RVPA 508
Score = 35.2 bits (81), Expect = 0.28
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
IP+ +S+L L++++L N I S ++ L L L N+ L +L SL
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 485 VLNLSKN 491
+LNL+ N
Sbjct: 494 ILNLNGN 500
Score = 34.0 bits (78), Expect = 0.70
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 193 LRILDLSHNKLR-----TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
L+ ++LS N +R +LG + L+ L L N + P + L+SLRILN+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITS------LEVLDLSYNSFNGSIPESLGQLTSLRILNL 497
Query: 248 SSNHL 252
+ N L
Sbjct: 498 NGNSL 502
Score = 32.5 bits (74), Expect = 2.1
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 771 VPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVL 830
VP + P D FI L ++N + + + L LQ +
Sbjct: 398 VPQQHPWSGADCQFDSTK-----GKWFID-----GLGLDNQGLRGFIPNDISKLRHLQSI 447
Query: 831 HLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
+L N I ++ L L L N + L SL++L L+GN L
Sbjct: 448 NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Score = 31.3 bits (71), Expect = 4.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
+P + LR LQ +N+S ++I+ S+ +++ L+LS NS
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
>gnl|CDD|201808 pfam01462, LRRNT, Leucine rich repeat N-terminal domain. Leucine
Rich Repeats pfam00560 are short sequence motifs present
in a number of proteins with diverse functions and
cellular locations. Leucine Rich Repeats are often
flanked by cysteine rich domains. This domain is often
found at the N-terminus of tandem leucine rich repeats.
Length = 28
Score = 33.8 bits (78), Expect = 0.019
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP 776
CP C C VVDCS + ++ VP +P
Sbjct: 2 CPAPCVC-SGT-----VVDCSGRGLTEVPRDLP 28
>gnl|CDD|119322 cd06580, TM_PBP1_transp_TpRbsC_like, Transmembrane subunit (TM) of
Treponema pallidum (Tp) RbsC-1, RbsC-2 and related
proteins. This is a functionally uncharacterized subgroup
of TMs which belong to a larger group of TMs of
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporters, which are mainly involved in
the uptake of branched-chain amino acids (AAs) or in the
uptake of monosaccharides including ribose, galactose,
and arabinose, and which generally bind type 1 PBPs.
PBP-dependent ABC transporters consist of a PBP, two TMs,
and two cytoplasmic ABCs, and are mainly involved in
importing solutes from the environment. The solute is
captured by the PBP, which delivers it to a gated
translocation pathway formed by the two TMs. The two ABCs
bind and hydrolyze ATP and drive the transport reaction.
Length = 234
Score = 37.8 bits (89), Expect = 0.025
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 961 YYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRL 1016
+ VI+ +M++ Y+ + ++L+ L L++I+ + T++G+RL
Sbjct: 74 KLGVNEVISGLMLN-YIALGLTSYLLLLALLLVILVWLLLY-------RTRFGLRL 121
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain. This is a family of bacterial
Toll-like receptors.
Length = 102
Score = 35.2 bits (82), Expect = 0.030
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVL 1124
EA ++ V+++L+ +L + W R AA + ++ +
Sbjct: 45 EALRSADVVLVLLSPAYLASPWCR--AEWGAALERGKRLIPV 84
Score = 32.5 bits (75), Expect = 0.31
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 1105 SRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSA 1141
D + EA ++ V+++L+ +L + W R+++ +A
Sbjct: 38 DWRDEIEEALRSADVVLVLLSPAYLASPWCRAEWGAA 74
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 31.6 bits (72), Expect = 0.21
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 660 NPFDCDCSMDWL 671
NPF CDC + WL
Sbjct: 1 NPFICDCELRWL 12
Score = 30.1 bits (68), Expect = 0.66
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 907 NPFSCSCATLQELQTWIIDNSNKVKDGLDISCV 939
NPF C C L+ L W+ N + ++D +D+ C
Sbjct: 1 NPFICDC-ELRWLLRWLQANEH-LQDPVDLRCA 31
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 34.7 bits (79), Expect = 0.45
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 652 LPEFYLGGNPFDCDCSMDWLP 672
L E L GNPF+CDC + LP
Sbjct: 21 LSEIDLSGNPFECDCGLARLP 41
Score = 31.6 bits (71), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 439 DLGENQISKIENGSFKNLQQLTDLRLVDN 467
D+ N+IS IE G NL L+++ L N
Sbjct: 1 DISNNKISTIEEGICANLCNLSEIDLSGN 29
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family includes
many hypothetical membrane proteins of unknown function.
Many of the proteins contain two copies of the aligned
region. The family used to be known as DUF6.
Length = 126
Score = 32.2 bits (74), Expect = 0.50
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 962 YATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLF 1017
+A V + ++ P + + ++LI+ +F+ + PF + L+
Sbjct: 3 WALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLY 58
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 29.6 bits (68), Expect = 0.56
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 240 SSLRILNISSNHLVSLPE 257
SL+ LN+S+N L SLPE
Sbjct: 2 PSLKELNVSNNQLTSLPE 19
>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family.
Length = 221
Score = 33.2 bits (76), Expect = 0.70
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 977 LPFMIITFLMFLVFLILIIFMFVFKDPFRVWL 1008
L + I+ ++F++ + I FV++D L
Sbjct: 77 LTYFILLLILFILEIAAGILAFVYRDKLESSL 108
>gnl|CDD|221751 pfam12749, Metallothio_Euk, Eukaryotic metallothionein. This is a
family of eukaryotic metallothioneins.
Length = 70
Score = 30.5 bits (68), Expect = 0.91
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 726 CFALCHCCEFDACDCEMTCPKNCSC 750
C C C DC+ T P +C C
Sbjct: 43 CKCGCKCSSSAVDDCKCTGPTSCKC 67
Score = 29.8 bits (66), Expect = 1.3
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 726 CFALCHCCEFDACDCEMTC---PKNCSCFHDQNWNTNVVDC 763
C C + DACDC+ C C C + ++ V DC
Sbjct: 20 SEKCCKCGQGDACDCQSKCGCSDCKCGC---KCSSSAVDDC 57
>gnl|CDD|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 499
Score = 33.1 bits (76), Expect = 1.2
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 955 STTCTEYYATSSVIASIM--VSDYLPFMIITFLMFL---VFLILIIFMFVFKDPFRVWLY 1009
S ++T ASI L +IIT L+ L F + + K + L
Sbjct: 208 SAFNNGGFSTHD--ASIGYFNGSPLINLIITILIILGGIGFPVHYRLLIWIKSLKFLSLD 265
Query: 1010 TKYGIRLF 1017
K +R
Sbjct: 266 PK--LRFT 271
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General
function prediction only].
Length = 727
Score = 33.0 bits (76), Expect = 1.4
Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 25/193 (12%)
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
L + F +SL V+ +E + + + LE L L + I +++ +
Sbjct: 57 LYKEFGSGTSLIVVVIEGDDVF-----SPEVLEALDSLEERLEEIPGVSS---VFSPADL 108
Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI 936
+ Q+ R+ +++S + +V S S + T II +
Sbjct: 109 LRQVGYGRIP-------DSDSKISEVI-----ESNSLLSPDNTHTLIIIK----LESDKN 152
Query: 937 SCVIDESSPPIRKEIDL-NSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILII 995
+E I + I++ + + Y T + + ++ L V L++I+
Sbjct: 153 DAQKEEIYEEIERIIEIAKFPSGVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIV 212
Query: 996 FMFVFKDPFRVWL 1008
+VF+ R L
Sbjct: 213 LYYVFRSVRRALL 225
>gnl|CDD|240575 cd12960, Spider_toxin, Spider neurotoxins including agatoxin,
purotoxin and ctenitoxin. This domain family contains
spider toxins that include the omega-Aga-IVB, a P-type
calcium channel antagonist from venom of the funnel web
spider, Agelenopsis aperta, as well as purotoxin-1
(PT1), a spider peptide venom of the Central Asian
spider Geolycosa sp., which specifically exerts
inhibitory action on P2X3 purinoreceptors at nanomolar
concentrations. These spider toxins, which are ion
channel blockers, share a common structural motif
composed of a triple-stranded antiparallel beta-sheet,
stabilized by internal disulfide bonds known as cystine
knots.
Length = 36
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 731 HCCEFDACDCEMTCPKNCSC 750
CCE C C + NC C
Sbjct: 15 PCCEGRPCKCNLW-GTNCKC 33
>gnl|CDD|240387 PTZ00371, PTZ00371, aspartyl aminopeptidase; Provisional.
Length = 465
Score = 32.6 bits (75), Expect = 1.6
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 1227 AHHTHP-YSSQHISSH-PLFKASTVISKNHNQ 1256
AH HP Y +H ++H P F VI N NQ
Sbjct: 338 AHAVHPNYPEKHQANHRPKFHEGIVIKYNANQ 369
>gnl|CDD|232787 TIGR00023, TIGR00023, acyl-phosphate glycerol 3-phosphate
acyltransferase. This model represents the full length
of acylphosphate:glycerol 3-phosphate acyltransferase,
and integral membrane protein about 200 amino acids in
length, called PlsY in Streptococcus pneumoniae, YneS in
Bacillus subtilis, and YgiH in E. coli. It is found in a
single copy in a large number of bacteria, including the
Mycoplasmas but not Mycobacteria or spirochetes, for
example. Its partner is PlsX (see TIGR00182), and the
pair can replace PlsB for synthesizing
1-acylglycerol-3-phosphate [Fatty acid and phospholipid
metabolism, Biosynthesis].
Length = 196
Score = 31.6 bits (72), Expect = 2.1
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 959 TEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVF----KDPFRVW 1007
T+Y + SS++ +I++ Y+ + + +L V L + +FV + R+
Sbjct: 137 TKYVSLSSIVTAIVLPFYVLWFHLPYLYIPVTL---LLIFVIYRHRANIQRLL 186
>gnl|CDD|234851 PRK00865, PRK00865, glutamate racemase; Provisional.
Length = 261
Score = 31.2 bits (72), Expect = 3.0
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 1113 AAEASR-RVILVL-TKNFLQTEWSRSDFRSAIHEALTTK------THKLV-LVEENIVPE 1163
AA +R I VL T ++ + +R I +LV LVE I+
Sbjct: 104 AAALTRNGRIGVLATPGTVK----SAAYRDLIARFAPDCQVESLACPELVPLVEAGILGG 159
Query: 1164 AESDIELKPYLKSCMK 1179
+ L+ YL +
Sbjct: 160 PVTLEVLREYLAPLLA 175
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 27.2 bits (62), Expect = 3.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 435 LKTLDLGENQISKIEN 450
L+ LDLG+N+I KIEN
Sbjct: 4 LEELDLGDNKIKKIEN 19
>gnl|CDD|110723 pfam01745, IPT, Isopentenyl transferase. Isopentenyl transferase /
dimethylallyl transferase synthesises
isopentenyladensosine 5'-monophosphate, a cytokinin that
induces shoot formation on host plants infected with the
Ti plasmid.
Length = 232
Score = 30.8 bits (70), Expect = 4.3
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 1071 YLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQ 1130
YL S +I+A EA R+I +T + ++E S L K Q
Sbjct: 60 YLDNRPLSEGIIDAEEAHDRLIAEVTSHK-----DEGGVILEGGSIS------LLKRMAQ 108
Query: 1131 TEWSRSDFRSAIH 1143
+ + + F +
Sbjct: 109 SPYWNAGFPWHVK 121
>gnl|CDD|220472 pfam09924, DUF2156, Uncharacterized conserved protein (DUF2156).
This domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 246
Score = 30.6 bits (70), Expect = 4.4
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 833 ENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA 890
+ FYG + L EL L R+ A++ L+ L G + + R
Sbjct: 66 AHGWRPVFYGVSEELAPLLHELGLTFLRL------GEEAVVDLEDFTLSGKKFRKLRN 117
>gnl|CDD|213686 TIGR02167, Liste_lipo_26, bacterial surface protein 26-residue
repeat. This model describes a tandem peptide repeat
sequence of 25 or 26 residues, found in predicted
surface proteins (often lipoproteins) from Listeria
monocytogenes, L. innocua, Enterococcus faecalis,
Lactobacillus plantarum, Mycoplasma mycoides,
Helicobacter hepaticus, and other species.
Length = 26
Score = 27.1 bits (61), Expect = 4.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 406 FKNCSALKELDLSS 419
F CS+L LDLS+
Sbjct: 2 FSGCSSLTSLDLSN 15
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 31.0 bits (71), Expect = 5.5
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 976 YLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGI-RLFNFK 1020
Y+P + +M F + K F V + K I +L N K
Sbjct: 435 YVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLK 480
>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
related but duplicated, double-length protein SppA
(protease IV) of E. coli was shown experimentally to
degrade signal peptides as are released by protein
processing and secretion. This protein shows stronger
homology to the C-terminal region of SppA than to the
N-terminal domain or to the related putative protease
SuhB. The member of this family from Bacillus subtilis
was shown to have properties consistent with a role in
degrading signal peptides after cleavage from precursor
proteins, although it was not demonstrated conclusively
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 208
Score = 30.0 bits (68), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 1008 LYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAE 1048
L K GI K+ + K G +L +E+ +LQS+V E
Sbjct: 110 LAEKLGISFEVIKSGAYKDIGSPTRELTPEEKNILQSLVNE 150
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 30.6 bits (69), Expect = 6.1
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 962 YATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWL 1008
+ S + + V PF+ L FL+ +L++ + + +
Sbjct: 19 WGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPA 65
>gnl|CDD|221975 pfam13197, DUF4013, Protein of unknown function (DUF4013). This is a
family of uncharacterized proteins that is found in
archaea and bacteria.
Length = 167
Score = 29.5 bits (67), Expect = 6.3
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 963 ATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVF 1000
A A+ + L+ L+ ++ I+ +
Sbjct: 72 ALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLL 109
>gnl|CDD|241363 cd13209, PH-GRAM_MTMR3_MTMR4, Myotubularian (MTM) related 3 and 4
proteins (MTMR3 and MTMR4) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTMR3 is
a member of the myotubularin dual specificity protein
phosphatase gene family. MTMR3 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro. The
protein can self-associate and also form heteromers with
MTMR4. MTMR4, a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR4 binds
to phosphoinositide lipids through its PH-GRAM domain,
and can hydrolyze phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro. The
protein form heteromers with MTMR3. Both MTMR3 and MTMR4
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal lipid-binding FYVE domain which binds
phosphotidylinositol-3-phosphate. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 121
Score = 28.9 bits (64), Expect = 7.2
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 221 LHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSS--CRDISEIY 270
L E E A +A +A+S+ R+ + ++++P + S CRD+ +++
Sbjct: 30 LQGEGVEYLGHANDAVIAISNYRLHIKFKDSVINVPLRMMESVECRDMFQLH 81
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family. Photolyases and
cryptochromes are related flavoproteins. Photolyases
harness the energy of blue light to repair DNA damage by
removing pyrimidine dimers. Cryptochromes do not repair
DNA and are presumed to act instead in some other
(possibly unknown) process such as entraining circadian
rhythms. This model describes the cryptochrome DASH
subfamily, one of at least five major subfamilies, which
is found in plants, animals, marine bacteria, etc.
Members of this family bind both folate and FAD. They may
show weak photolyase activity in vitro but have not been
shown to affect DNA repair in vivo. Rather, DASH family
cryptochromes have been shown to bind RNA (Vibrio
cholerae VC1814), or DNA, and seem likely to act in
light-responsive regulatory processes [Cellular
processes, Adaptations to atypical conditions, Regulatory
functions, DNA interactions].
Length = 429
Score = 30.4 bits (69), Expect = 7.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 994 IIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKH 1026
+IF +++D FR + KYG RLF F KH
Sbjct: 280 VIFELLWRDYFR-FYALKYGNRLFRFGGLRGKH 311
>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 29.9 bits (68), Expect = 8.0
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 968 IASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYT 1010
I +++++ + L+ + IL+I VF P LYT
Sbjct: 143 ILALILNKKFGISVGKILLLVDGFILLIAALVF-GPLPNALYT 184
>gnl|CDD|218019 pfam04307, DUF457, Predicted membrane-bound metal-dependent hydrolase
(DUF457). Family of predicted membrane-bound
metal-dependent hydrolases, based on CA_C0507. May act as
phospholipases.
Length = 157
Score = 29.3 bits (66), Expect = 8.5
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 14/50 (28%)
Query: 982 ITFLMFLVFLILIIFMFVFKDPFRVWLY--------------TKYGIRLF 1017
+ FL+ L L+ + + + L T YG+ L
Sbjct: 64 LLFLLLLALLLAALLRRLGASWLILGLALALGYLSHLLLDALTPYGVPLL 113
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 30.0 bits (68), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 184 KIECSGGMDLRILDLSHNKLRTLGDYSGI 212
KI G D+ ILDL+ ++LR L D G
Sbjct: 185 KIAIGLGADVTILDLNIDRLRQLDDLFGG 213
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 30.1 bits (68), Expect = 8.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 968 IASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNF 1019
++ +VS L F+++TF + L+ L L+I +FV L +R+
Sbjct: 123 LSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLI 174
>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase
component YidC; Provisional.
Length = 357
Score = 30.0 bits (68), Expect = 9.6
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 26/105 (24%)
Query: 920 QTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYA---------------- 963
Q++++ +S V GL+ + + S+ Y
Sbjct: 53 QSFVVKSSTNVGSGLEFYTNKESKNN---YRYLFISSNTGPYNPITSWTWKYGPFYGLFV 109
Query: 964 --TSSVIASIMVSDYLP----FMIITFLMFLVFLI-LIIFMFVFK 1001
+ +I SIM S L + I ++ +V +I LI F+ FK
Sbjct: 110 YPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFK 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 67,058,581
Number of extensions: 6613756
Number of successful extensions: 8408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8121
Number of HSP's successfully gapped: 213
Length of query: 1344
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1235
Effective length of database: 6,103,016
Effective search space: 7537224760
Effective search space used: 7537224760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.5 bits)