RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16377
(1344 letters)
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 385 bits (991), Expect = e-117
Identities = 169/984 (17%), Positives = 328/984 (33%), Gaps = 192/984 (19%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
+ +L+ L L LS N + + A +F L LQ L+L +
Sbjct: 8 IAFYRFCNLTQ------VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61
Query: 352 Y-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL--VNIDSKAFKN 408
I+ AF +L NL + L ++I+ + F GL+ L +L L L + F+N
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Query: 409 CSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ--LTDLRL 464
AL LDLS N I + + + +L LK++D NQI + + LQ L+ L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 465 VDNNIGNLSSGMLYELP------SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
N++ + S + LE+L++S N G F SN ++
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF------------SNAIS 229
Query: 519 DIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSI 577
++ +++ D N + L S+
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIK--------------DPDQNTFAGLAR-------SSV 268
Query: 578 KNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
++LD SH + ++ ++VL + N I + F+ NL +++ N + +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 636 LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNV 695
L + + L N + II + T + K+ LD
Sbjct: 329 LYSSNFY-----GLPKVAYIDLQKNH---------IAIIQDQTFKFL----EKLQTLDLR 370
Query: 696 VCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQN 755
+T +P +L N
Sbjct: 371 DNALTTIHFIPSIP------DIFLSG------------------------NKLVTLPKIN 400
Query: 756 WNTNVVDCSEQQISTVPPRIPMDA----THVYLDGNTFKTIP-NHVFIGRKNMLSLYVNN 810
N++ SE ++ + + + L+ N F + + ++ L++
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 811 SQIEV-----ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
+ +++ + F GLS LQVL+L +N + F +L L L L NR+ ++
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIID 925
+ +L++L + N+L + + + L + + +N F C C L W+
Sbjct: 521 HNDL--PANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE-LSTFINWLNH 574
Query: 926 NSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFL 985
+ + + S L++ C E S+ S+ I+ +
Sbjct: 575 TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL--------FIVCTV 626
Query: 986 MFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKL--------PKD 1037
+FL+ I+ + F+ ++ K RL E KD
Sbjct: 627 TLTLFLMTILTVTKFRG--FCFICYKTAQRLVFKDHPQGT---EPDMYKYDAYLCFSSKD 681
Query: 1038 EEFVLQSIVAELE---HGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
+V +++ L+ + LC RD +
Sbjct: 682 FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIAN-------------------- 721
Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
+ +A SR+++ +++++FL+ W F A L+ L+
Sbjct: 722 ---------------IQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALI 766
Query: 1155 LV-EENIVPEAES-DIELKPYLKSCMKIRWGEKR-----FWERLRYAMPTCDNSKKSCNY 1207
+V ++ ++ +++ +RW E F +L + +
Sbjct: 767 MVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKEKE------ 820
Query: 1208 RRNINNYTIDSGTGRRSIEAHHTH 1231
++ NN + + S HH H
Sbjct: 821 KKKDNNIPLQTVAT-ISGSHHHHH 843
Score = 334 bits (858), Expect = 2e-98
Identities = 134/699 (19%), Positives = 250/699 (35%), Gaps = 125/699 (17%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
Q + + E L +S + + F L L+ L + ++ L + + L
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLP 73
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
L++L++ SS I + D F L ++ L L + D R A
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA--------- 124
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS--SLRI 244
L LDLS N++R+L + K L+++ +N+I + + L +L
Sbjct: 125 ------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 245 LNISSNHLVSLPEGLFSSC------RDISEIYAQKNSLVELSRGLFHK------------ 286
++++N L S + C + + N G F
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIR--LIILNLSNNELTRIDAKTFKDLVFLQRLD 344
++ +++ D+ TF GL R + L+LS+ + ++++ F+ L L+ L+
Sbjct: 239 AHHIMGAGFGFHNIK--DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296
Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
L N I I D AF L NL + LS N + + + F GL ++ + L N + I +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
FK L+ LDL NA+ I +P + + L N++ + + + L
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINL----TANLIHL 408
Query: 465 VDNNIGNLSSG-MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV 523
+N + NL L +P L++L L++N+ +
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCS----------------------GDQT 446
Query: 524 FTYLAQLLWLNLSENHLVWFDYAMVPG-------NLKWLDIHGNYISSLNNYYEIKDGLS 576
+ L L L EN L + +L+ L ++ NY++SL +
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FSHLTA 505
Query: 577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
++ L + NR+ +S +P ++E+L I+ N + + P F
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVF------------------- 546
Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVV 696
+L + N F C+C + N+T+ ++ ++
Sbjct: 547 -------------VSLSVLDITHNKFICECELSTFINWLNHTNVTIAG------PPADIY 587
Query: 697 CKM-TYSRGS--THLPASEAAPSQYLCPYDIHCFALCHC 732
C G L + L F +C
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626
Score = 252 bits (646), Expect = 3e-70
Identities = 100/499 (20%), Positives = 187/499 (37%), Gaps = 43/499 (8%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
D RI L + + L L N I + ++F L L++L + S +
Sbjct: 5 DGRIAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59
Query: 252 L-VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
+++ + F + ++ + + + L F L L L L LS + + F
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119
Query: 311 IGLIRLIILNLSNNELTRIDA-KTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY--NLHTI 367
L L L+LS N++ + +F L L+ +D +N I + ++ L L
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 368 YLSENRIHHITAHLFNGLY------VLSKLTLSNNLLVNIDSKAFKNC------------ 409
L+ N ++ + + VL L +S N + F N
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 410 SALKELDLSSNAIVEIP-SALSELP--FLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
+ + I + + + L ++ LDL + + + F+ L+ L L L
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFT 525
N I ++ Y L +L+VLNLS N + ++ F ++A I L N + I + F
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
+L +L L+L +N L + ++ + + GN + +L L+ + S N
Sbjct: 360 FLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPK-----INLTANLIHLSEN 411
Query: 586 RILEISELSIP---NSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTAL 641
R+ + L +++L +N N S + +L ++ + N + T L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 642 RLKPVPQNKTLPEFYLGGN 660
L YL N
Sbjct: 472 CWDVFEGLSHLQVLYLNHN 490
Score = 210 bits (535), Expect = 4e-56
Identities = 94/473 (19%), Positives = 179/473 (37%), Gaps = 59/473 (12%)
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
RI +L +P+ L + N + ++ F LEQL +L+L S +
Sbjct: 4 FDGRIAFYRFCNLTQVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59
Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI--GYIEDNA 357
ID+ F L L IL+L ++++ + F+ L L L L + ++D
Sbjct: 60 T-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118
Query: 358 FLSLYNLHTIYLSENRIHHITAH-LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA--LKE 414
F +L L + LS+N+I + H F L L + S+N + + + L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 415 LDLSSNAIVEIPSALSELPF-------LKTLDLGENQISKIENGSFKN------------ 455
L++N++ S L+ LD+ N + G+F N
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELP--SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
+ +NI + L S+ L+LS + + FE K L + L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 514 SNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSL----- 565
N + I + F L L LNLS N L + G + ++D+ N+I+ +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Query: 566 -------------NNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSV 612
N I SI ++ S N+++ + ++++ + ++ ++ N ++++
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL--TANLIHLSENRLENL 416
Query: 613 KPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDC 664
F + +L + + N + +N +L + +LG N
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQT----PSENPSLEQLFLGENMLQL 465
Score = 158 bits (400), Expect = 2e-39
Identities = 97/506 (19%), Positives = 156/506 (30%), Gaps = 124/506 (24%)
Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG-N 471
+ + ++P L + L L N I + SF L+QL L L
Sbjct: 7 RIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
+ LP+L +L+L +KI+ + F+ L L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-----------------------LFHLF 100
Query: 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIS 591
L L L + Y +L
Sbjct: 101 ELRLYFC------------GLSDAVLKDGYFRNLKA------------------------ 124
Query: 592 ELSIPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQNK 650
+ L ++ N I+S+ H F K ++L +D +N I + L Q K
Sbjct: 125 -------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE---PLQGK 174
Query: 651 TLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPA 710
TL F L N S+DW +N + +E I+D+ G+
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE-----ILDV----------SGNGWTVD 219
Query: 711 SEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQIST 770
S + L H + I
Sbjct: 220 ITGNFSNAISKSQAFSLILAH-------------------------HIMGAGFGFHNIKD 254
Query: 771 VPPRI-----PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
H+ L ++ + VF K++ L + ++I I ++ F GL
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314
Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
+LQVL+L NL+ Y F L K++ + LQ+N I I + TF L LQ L L N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 886 KSFRAFDLNTNSMLRKVYLGNNPFSC 911
+ + ++L N
Sbjct: 375 TTIHFI-----PSIPDIFLSGNKLVT 395
Score = 97.6 bits (243), Expect = 1e-20
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 10/177 (5%)
Query: 749 SCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV 808
SC D + ++ VP + + L N +T+ F + + L +
Sbjct: 1 SCSFDGR----IAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLEL 55
Query: 809 NNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE--YIA 865
+ + I + F L +L++L L ++ I + F L L EL L + +
Sbjct: 56 GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNNPFSCSCA-TLQELQ 920
+G F L +L L L N+++S + L+ + +N C L+ LQ
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 367 bits (945), Expect = e-112
Identities = 142/691 (20%), Positives = 261/691 (37%), Gaps = 97/691 (14%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S + + Q + L+ L + + +L +L F+ NL L + + ++Q +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-------KIKN 114
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
+ L L++S + + S L N+Q L LS N I+ + + + S+
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS-- 172
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF--- 236
L+ L+LS N+++ RL L L N ++
Sbjct: 173 -------------LKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLE 218
Query: 237 VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296
+A +S+R L++S++ L + F + + L +LDLS
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTN----------------------LTMLDLS 256
Query: 297 SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
N+L+ + +F L +L L N + + + + L ++ L+L+
Sbjct: 257 YNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR--------- 305
Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
+ +S + I F L L L + +N + I S F LK L
Sbjct: 306 ------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 417 LSSNAI---VEIPSALSELPF--LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-G 470
LS++ L L L+L +N+ISKIE+ +F L L L L N I
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN---GVFTYL 527
L+ L ++ + LS NK Q+ +F L + L L +++ F L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Query: 528 AQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSL-------NNYYEIKDGLSIK 578
L L+LS N++ + M+ G L+ LD+ N ++ L Y +K +
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 579 NLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
L+ N EI + ++++ + N + ++ F ++ +L +++ N IT +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPFDCDC-SMDWLPIINNNTSPSMERQYPKIMDLDNV 695
+ P + L E + NPFDC C S+ W N T P++ +
Sbjct: 600 EKKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNWINETH----TNIPELS--SHY 649
Query: 696 VCKM-TYSRGSTHLPASEAAPSQYLCPYDIH 725
+C + G ++ + H
Sbjct: 650 LCNTPPHYHGFPVRLFDTSSCKDSAHHHHHH 680
Score = 129 bits (326), Expect = 1e-30
Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 38/244 (15%)
Query: 58 LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
+ +T + ++ + ++ E+ +S K ++L + F+ + +L+RL + L+ +D
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-----VDS 471
Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASA 177
P LR L +L++S++NI +I+DD+ L ++ L+L N++ +
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531
Query: 178 ESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
L IL+L N + L+ + L N ++ + + F
Sbjct: 532 LKGLSH---------LHILNLESNGFDEIPVEV-FKDLFELKIIDLGLNNLNTLPASVFN 581
Query: 238 ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSS 297
SL+ LN+ N + S+ + +F L LD+
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFG-----------------------PAFRNLTELDMRF 618
Query: 298 NHLS 301
N
Sbjct: 619 NPFD 622
Score = 109 bits (275), Expect = 2e-24
Identities = 42/156 (26%), Positives = 69/156 (44%)
Query: 755 NWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE 814
+ V DCS +++ VP +P + T + L N + +P F + SL V + I
Sbjct: 3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALIS 874
+ + L L+VL+L++N ++ F L+EL+L N I+ I N F +
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 875 LQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
L L L N L S + L+++ L NN
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Score = 88.9 bits (221), Expect = 5e-18
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
+ L N + + F N+ L++ ++ I+ I N F +L L L +N ++
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNAL--ISLQVLQLDGNRLKSFRAFDLNTNS 897
LE L EL L N+I+ + + + SL+ L+L N++K F +
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 898 MLRKVYLGNNPFSCS 912
L ++L N S
Sbjct: 196 RLFGLFLNNVQLGPS 210
Score = 80.4 bits (199), Expect = 2e-15
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 780 THVYLDGN--TFKTIPNHVFIGRKNML--SLYVNNSQIEVILNQTFNGLSSLQVLHLENN 835
++ L + + +T+ N F+ + L + ++I I + F+ L L+VL L N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 836 LITH-FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFD 892
I G E+ LE + E+YL N+ + +F + SLQ L L LK+
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 893 LNTNSMLRKVYLGNNPFS-------CSCATLQEL 919
L + L NN + L+ L
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Score = 79.7 bits (197), Expect = 4e-15
Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
L + P + G ++ L + ++ + I + F L L+++ L N +
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577
Query: 843 YEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV 902
F+N L L LQ+N I + F L ++
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVF-----------------------GPAFRNLTEL 614
Query: 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGL-DISCVIDESSPPIRKE---IDLNSTTC 958
+ NPF C+C ++ WI + + + C ++PP ++++C
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC----NTPPHYHGFPVRLFDTSSC 670
Query: 959 TE 960
+
Sbjct: 671 KD 672
Score = 76.2 bits (188), Expect = 4e-14
Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Query: 780 THVYLDGNTF-KTIPNHVF--IGRKNMLSLYVNNSQIEVILNQTFNGL--SSLQVLHLEN 834
++L+ ++ + + ++ +L ++NSQ+ N TF GL ++L +L L
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 835 NLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN---------RL 885
N + F L +L +L+ N I+++ + + + L +++ L L + L
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317
Query: 886 KSFRAFDLNTNSMLRKVYLGNNPFS-------CSCATLQEL 919
F L + + +N L+ L
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Score = 75.8 bits (187), Expect = 5e-14
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 16/160 (10%)
Query: 767 QISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIG---------RKNMLSLYVNNSQIE 814
++ V + +L+ N + + +H G +++ ++ + +
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE--YIANGTFNAL 872
I + +F L L+ L++E+N I F L L L L + + N TF +L
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 873 I--SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
L +L L N++ + + L + LG N
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418
Score = 71.2 bits (175), Expect = 2e-12
Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN--GLSSLQVLHLENNLI 837
+ L N + + +N+ L ++N++I+ + ++ + SSL+ L L +N I
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 838 THFYGYEFDNLEKLSELYLQENRIEYIANGTF---NALISLQVLQLDGNRLKSF--RAFD 892
F F + +L L+L ++ A S++ L L ++L + F
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243
Query: 893 LNTNSMLRKVYLGNNPFS 910
+ L + L N +
Sbjct: 244 GLKWTNLTMLDLSYNNLN 261
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 362 bits (932), Expect = e-111
Identities = 116/638 (18%), Positives = 220/638 (34%), Gaps = 75/638 (11%)
Query: 74 EELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNI 133
+ N L E+P + + L + N L + + L L L++
Sbjct: 15 KTYNCENLGLNEIPGTLPNSTECL-EFSFN--VLP-------TIQNTTFSRLINLTFLDL 64
Query: 134 SSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDL 193
+ I I +D F S + TL L+ N + + SG L
Sbjct: 65 TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-----------------SGPKAL 107
Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
+ L + ++ + + L++L+L +N IS I L++L+ +N +
Sbjct: 108 KHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166
Query: 254 SLPEGLFSSCRDISEIY--AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L + SS + + + N + + G F L+
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNS 225
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVF--LQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
+ L + + + I F+ L ++ ++L+ + I N F L + L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285
Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPS 427
+ + + + L L L KL LS N N+ + N +L L + N
Sbjct: 286 TATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 428 ALSELPFLKTLDLGENQISKIE--NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
L L L+ LDL + I + N +NL L L L N +L + E P LE+
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 486 LNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWF 543
L+L+ ++ + F+ L + L + L + +F L L LNL NH
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 544 DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEV 601
+ +L+ L ++ L S + I + + + +
Sbjct: 465 NIQK-TNSLQTLG-------------------RLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 602 LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
+ +++N + S + +++ +N I+ + + L + L NP
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS-----QQRTINLRQNP 558
Query: 662 FDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKM 699
DC CS + K+ D ++ +C+
Sbjct: 559 LDCTCSNIYFLEWYKE-------NMQKLEDTEDTLCEN 589
Score = 224 bits (572), Expect = 2e-62
Identities = 87/442 (19%), Positives = 162/442 (36%), Gaps = 37/442 (8%)
Query: 35 SNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGL 94
+ + D +++ T L I SL + ++ VF GL
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 95 RNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQT 154
+ +IN + + ++ + LQ L+++++++ + L+ ++
Sbjct: 252 CEMSVESINLQKHYFF-----NISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKK 305
Query: 155 LNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM-DLRILDLSHNKLRTLGDYSGIT 213
L LS N ++ + L L + N R +
Sbjct: 306 LVLSANKFENLCQISA------------------SNFPSLTHLSIKGNTKRLELGTGCLE 347
Query: 214 KFRRLQNLHLENNEISQI--APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA 271
L+ L L +++I LS L+ LN+S N +SL F C + +
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 272 QKNSLVEL-SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID 330
L ++ F L L VL+LS + L E F GL L LNL N + +
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD--ISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 331 AK---TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
+ + + L L+ L L + I+ +AF SL ++ + LS NR+ + + L
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
+ L L++N + I S + ++L N + S + FL+ ++
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI---YFLEWYKENMQKLED 581
Query: 448 IENGSFKNLQQLTDLRLVDNNI 469
E+ +N L +RL D +
Sbjct: 582 TEDTLCENPPLLRGVRLSDVTL 603
Score = 124 bits (313), Expect = 2e-29
Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 6/190 (3%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
T + C + +C ++ +P +P + N TI N F N
Sbjct: 1 TTSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLIN 58
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ L + QI I TF L L L N + + L L+ + I
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC----ATLQE 918
I + +L+ L L N + S + L+ + NN ++LQ+
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 919 LQTWIIDNSN 928
++ +
Sbjct: 179 ATNLSLNLNG 188
Score = 110 bits (276), Expect = 9e-25
Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQ---TFNGLSSLQVLHLENNL 836
+ L + +F G + L + + Q + L L++L L
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN 896
++ + F +L+ ++ + L NR+ + + L + L L N + L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL--N 954
S R + L NP C+C + W +N K++D D C +PP+ + + L
Sbjct: 547 SQQRTINLRQNPLDCTC-SNIYFLEWYKENMQKLEDTEDTLC----ENPPLLRGVRLSDV 601
Query: 955 STTCT 959
+ +C+
Sbjct: 602 TLSCS 606
Score = 82.0 bits (203), Expect = 6e-16
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
+ L + F I ++ F + L + + + + + GLS+L+ L L N +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN 315
Query: 840 FYGYEFDNLEKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKS--FRAFDLNTN 896
N L+ L ++ N + G L +L+ L L + +++ L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 897 SMLRKVYLGNNPFS 910
S L+ + L N
Sbjct: 376 SHLQSLNLSYNEPL 389
Score = 81.2 bits (201), Expect = 1e-15
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
Query: 780 THVYLDGNTFKT-IPNHVFIGRKNMLSLYVNNSQIEVI--LNQTFNGLSSLQVLHLENNL 836
TH+ + GNT + + +N+ L +++ IE N LS LQ L+L N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYI-ANGTFNALISLQVLQLDGNRLKSFRAFDLNT 895
F +L L L R++ A F L L+VL L + L +
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 896 NSMLRKVYLGNNPFS 910
L+ + L N F
Sbjct: 448 LPALQHLNLQGNHFP 462
Score = 76.2 bits (188), Expect = 3e-14
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 780 THVYLDGNTFKTIP--NHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
+ L + +T N ++ SL ++ ++ + + F L++L L +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 838 THF-YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNT- 895
F NL L L L + ++ + F+ L +LQ L L GN N+
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472
Query: 896 --NSMLRKVYLGNNPFS 910
L + L S
Sbjct: 473 QTLGRLEILVLSFCDLS 489
Score = 63.5 bits (155), Expect = 4e-10
Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 760 VVDCSEQQISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIG--RKNMLSLYVNNSQIE 814
+ IS++ + N + + LSL +N + I
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 815 VILNQTFNGLSSLQV-LHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL- 872
I F+ + NL+ F G + ++ L ++ E I+ F L
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 873 -ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+S++ + L + + + + S L+++ L S
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 305 bits (782), Expect = 2e-90
Identities = 117/584 (20%), Positives = 218/584 (37%), Gaps = 64/584 (10%)
Query: 34 GSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQNIYSLEELKISNCKLVELP 87
LS VP D+ + +D + + SF N L+ L +S C++ +
Sbjct: 20 DQKLSKVPDDIPSSTKN-------IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 88 VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFC 147
+ GL +L L + +Q PGS GL L+ L + + S+
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQ-------SFSPGSFSGLTSLENLVAVETKLASLESFPIG 125
Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL- 206
L ++ LN++ N I + S +L +DLS+N ++T+
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAY----------------FSNLTNLVHVDLSYNYIQTIT 169
Query: 207 -GDYSGITKFRR-LQNLHLENNEISQIAPNAFVALSSLRILNISSNHL-VSLPEGLFSSC 263
D + + + +L + N I I AF + L L + N ++ + +
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNL 228
Query: 264 RD------ISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
I + + +L + L + + + + + D F L +
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
++L+ + ++ Q L + + L L L ++ L+ N+
Sbjct: 289 AMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSIS 343
Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN--CSALKELDLSSNAIVEIPSALSELPFL 435
L LS L LS N L ++ + ++L+ LDLS N + + + L L
Sbjct: 344 --FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401
Query: 436 KTLDLGENQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
+ LD + + ++ E +F +L++L L + N G+ L SL L ++ N
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 495 Q-IEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPG-- 550
F L + L L I+ GVF L +L LN+S N+L++ D +
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEISEL 593
+L LD N I + ++ S+ + ++N + I E
Sbjct: 522 SLSTLDCSFNRIETSKG--ILQHFPKSLAFFNLTNNSVACICEH 563
Score = 300 bits (771), Expect = 5e-89
Identities = 118/623 (18%), Positives = 231/623 (37%), Gaps = 71/623 (11%)
Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
+KL VP + + +++S + +K + F + + +Q L+LSR I I+ +
Sbjct: 20 DQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW- 76
Query: 172 VRRASAESNSGEKIECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230
G+ L L L+ N +++ S + L+NL +++
Sbjct: 77 -----------------HGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLAS 118
Query: 231 IAPNAFVALSSLRILNISSNHLVSLPE-GLFSSCRDISEIYAQKNSLVELS----RGLFH 285
+ L +L+ LN++ N + S FS+ ++ + N + ++ + L
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL-TRIDAKTFKDLVFLQRLD 344
+ L LD+S N + I + F G+ +L L L N + I ++L L
Sbjct: 179 NPQVNLSLDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235
Query: 345 LR------NNSIGYIEDNAFLSLYNLHT--IYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
L ++ E + L ++ L+ F+ L +S ++L+
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Query: 397 LLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNL 456
+ ++ + L + + + P+ +LPFLK+L L N+ S L
Sbjct: 296 SIKYLEDVPK--HFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF--KKVAL 349
Query: 457 QQLTDLRLVDNNIGNLSSGMLYEL--PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDS 514
L+ L L N + +L SL L+LS N + F + L +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQH 408
Query: 515 NFLTDIN--GVFTYLAQLLWLNLSENHL-VWFDYAMVP-GNLKWLDIHGNYISSLNNYYE 570
+ L + F L +LL+L++S + + FD + +L L + GN
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 571 IKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
+ ++ LD S ++ +IS +++L +++N + + + +L+ +D
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLP---IINNNTSPSMER- 684
N I K+L F L N C C ++E+
Sbjct: 529 SFNRIETSKGILQ-----HFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQM 583
Query: 685 --QYP------KIMDLDNVVCKM 699
P ++D +N C M
Sbjct: 584 TCATPVEMNTSLVLDFNNSTCYM 606
Score = 231 bits (590), Expect = 8e-65
Identities = 114/621 (18%), Positives = 211/621 (33%), Gaps = 57/621 (9%)
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
T + ++ + + + + LS N L + S +F N S L+ LDLS I I
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 426 -PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
A L L L L N I GSF L L +L V+ + +L S + +L +L+
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131
Query: 485 VLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQL----LWLNLSEN 538
LN++ N IH ++ F L + L N++ I +L + L L++S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
Query: 539 HLVWF-DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN 597
+ + D A L L + GN+ SS ++NL + + +
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSN------IMKTCLQNL--AGLHVHRLILGE--- 240
Query: 598 SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYL 657
F + ++ +P ++ + ++ + + L
Sbjct: 241 -----FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM---SL 292
Query: 658 GGN------PFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPAS 711
G L II P + L + K + S LP+
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352
Query: 712 EA-----APSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQ 766
+ D S +D
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHS 409
Query: 767 QISTVPPRIPMDA----THVYLDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTF 821
+ V + ++ + K + +F+G ++ +L + NS + L+ F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
++L L L + FD L +L L + N + ++ + +N L SL L
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID 941
NR+++ + + L L NN +C C Q+ W+ + + + ++C
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACIC-EHQKFLQWVKEQKQFLVNVEQMTC--- 585
Query: 942 ESSPPIRKE---IDLNSTTCT 959
++P +D N++TC
Sbjct: 586 -ATPVEMNTSLVLDFNNSTCY 605
Score = 213 bits (544), Expect = 8e-59
Identities = 83/419 (19%), Positives = 165/419 (39%), Gaps = 20/419 (4%)
Query: 60 SSITTKSFQNIYSLEELKISNCKL-VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
I ++FQ I L EL + + L L + + +++ +
Sbjct: 194 DFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-IFE 251
Query: 119 PGSLDGLRELQV--LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF--AVRR 174
P ++GL ++ + ++ +N S F LAN+ ++L+ SI+ ++ + +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311
Query: 175 ASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234
S ++ L+ L L+ NK L L L N +S
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCC 368
Query: 235 AF--VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELS-RGLFHKLEQLL 291
++ + +SLR L++S N + + F ++ + Q ++L ++ F LE+LL
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRNNSI 350
LD+S + + F+GL L L ++ N + F + L LDL +
Sbjct: 428 YLDISYTNTKI--DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
I F +L+ L + +S N + + + +N LY LS L S N +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
+L +L++N++ I FL+ + + + +E + ++ ++D N
Sbjct: 546 SLAFFNLTNNSVACICEH---QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNN 601
Score = 195 bits (498), Expect = 9e-53
Identities = 75/390 (19%), Positives = 135/390 (34%), Gaps = 37/390 (9%)
Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
+ LS + I + ++LS N L + + +F + LQ LDL
Sbjct: 14 ITYQCMDQKLSKVPDDIPSS-------TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
I IED A+ L++L + L+ N I + F+GL L L L +++S
Sbjct: 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126
Query: 409 CSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD----L 462
LK+L+++ N I ++P+ S L L +DL N I I + L++ L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186
Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNK-IHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
+ N I + + L L L N I + L RL D
Sbjct: 187 DMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 522 -------GVFTYLAQL--LWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYE 570
+ L + L+ + D N+ + + G I L +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--- 302
Query: 571 IKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYA 630
+ ++L ++ + L +P ++ L + N +L+ +D+
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPF-LKSLTLTMNKGSI--SFKKVALPSLSYLDLSR 359
Query: 631 NDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
N ++ + + L L N
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHL---DLSFN 386
Score = 114 bits (287), Expect = 4e-26
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 9/174 (5%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
C C +Q++S VP IP ++ L N K + ++ F +
Sbjct: 3 SLNPCIEVVPNI----TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSEL 58
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
L ++ +IE I ++ ++GL L L L N I F F L L L E ++
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 864 IANGTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKVYLGNNPFSCSCA 914
+ + LI+L+ L + N + S + F TN L V L N
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN--LVHVDLSYNYIQTITV 170
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 301 bits (772), Expect = 8e-90
Identities = 102/523 (19%), Positives = 198/523 (37%), Gaps = 43/523 (8%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
++ LDLS NK+ +G + LQ L L+++ I+ I +AF +L SL L++S NH
Sbjct: 27 AMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELS-RGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
L SL F + + N L LF L L L + + S I F
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-EIRRIDF 144
Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
GL L L + L +++ K + + L L + ++ + L ++ + L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE----------LDLSSN 420
+ + V S + + ++F L D + N
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264
Query: 421 AIVEIP----SALSELPFLKT-----LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
+ + +SEL ++T L + + + + + L+++ + + ++ +
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGT---FEKNKRLAAIRLDSNFLTDIN---GVFT 525
+ L SLE L+LS+N + + + L + L N L + +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 526 YLAQLLWLNLSENHLVWFDYAMV-PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
L L L++S N + P +++L++ I + +++ LD S+
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSN 440
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
N + S ++ L+I+ N +K++ + F L + I N + +
Sbjct: 441 NNLDSFS--LFLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFD-- 494
Query: 645 PVPQNKTLPEFYLGGNPFDCDCSM-DWLPIINNNTSPSMERQY 686
+ +L + +L NP+DC C D+L N S +
Sbjct: 495 ---RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 534
Score = 220 bits (563), Expect = 9e-62
Identities = 85/462 (18%), Positives = 169/462 (36%), Gaps = 47/462 (10%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
SS+++ F + SL+ L + L V +F L NL+ L I + +
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE------IR 140
Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
GL L L I + ++++ S+ +I L L + + + + +
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS--- 197
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
+R L+L L +S + + S + +F
Sbjct: 198 --------------VRYLELRDTNLARF-QFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
L L +++ L E F C + +S + + L +
Sbjct: 243 LLKL------LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296
Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI---ED 355
+L T + L ++ + + N+++ + + L L+ LDL N +
Sbjct: 297 YLFY--DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 356 NAFLSLYNLHTIYLSENRIHHI--TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
+ +L T+ LS+N + + T + L L+ L +S N + + + ++
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMR 413
Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
L+LSS I + + + L+ LD+ N + L +L +L + N + L
Sbjct: 414 FLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLP 467
Query: 474 SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L P L V+ +S+N++ + G F++ L I L +N
Sbjct: 468 DASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 172 bits (438), Expect = 2e-45
Identities = 94/577 (16%), Positives = 176/577 (30%), Gaps = 99/577 (17%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+C A D S + IPS L+ +K+LDL N+I+ I +G + L L L +
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI--NGVFT 525
I + Y L SLE L+LS N + + F L + L N + +F
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
Query: 526 YLAQLLWLNLS-ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDA 582
L L L + G +L L+I + + + S+K++
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-------SLKSI-- 171
Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR 642
+ L ++ + + S++ +++ ++ + + L
Sbjct: 172 --------------RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217
Query: 643 LKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS 702
+ V F D S + L + E ++ + S
Sbjct: 218 VDEVSSPMKKLAFR---GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274
Query: 703 RGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVD 762
+ L E + L + F + +
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYD-----LSTVYSLLE-------------KVKRIT 316
Query: 763 CSEQQISTVPPRIPMDATHV---YLDGN--TFKTIPNHVFIGR-KNMLSLYVNNSQIEVI 816
++ VP + L N + + N G ++ +L ++ + + +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 817 --LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALI- 873
+ L +L L + N EK+ L L I + L
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435
Query: 874 ----------------SLQVLQLDGNRLKSF---------RAFDLNTNSM---------- 898
LQ L + N+LK+ ++ N +
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495
Query: 899 ---LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD 932
L+K++L NP+ CSC + L W+ NS K +
Sbjct: 496 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 532
Score = 71.3 bits (175), Expect = 1e-12
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 1/161 (0%)
Query: 780 THVYLDG-NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
+ + TF I F G ++ L + + +Q+ + + L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM 898
D L + L L++ + ++ R N
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 899 LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCV 939
L + L + TL L + S+ V + + V
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 288 bits (740), Expect = 8e-85
Identities = 120/573 (20%), Positives = 208/573 (36%), Gaps = 81/573 (14%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
+ LDLS N LR LG YS F LQ L L EI I A+ +LS L L ++ N
Sbjct: 29 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
+ SL G FS + ++ A + +L L L+ L L+++ N + S + E F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFS 146
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQ----RLDLRNNSIGYIEDNAFLSLYNLHTI 367
L L L+LS+N++ I + L + LDL N + +I+ AF + LH +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205
Query: 368 YLSENRIH-HITAHLFNGLYVLSKLTLSNNLL---VNIDSKAFKNCSALKELDLSSNAI- 422
L N ++ GL L L N++ L L + +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 423 ------VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
+I + L + + L I ++++ S+ L LV+ G +
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLK 323
Query: 477 L-------------------YELPSLEVLNLSKNKIHQIEIG--TFEKNKRLAAIRLDSN 515
L +LPSLE L+LS+N + + L + L N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 516 FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK---------------------- 553
+ ++ F L QL L+ ++L V +L+
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 554 -----WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINN 606
L + GN + ++ LD S ++ ++S + + S++VL +++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 607 NLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
N S+ + ++L +D N I L+ +L L N F C C
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----HFPSSLAFLNLTQNDFACTC 559
Query: 667 SMDWLPIINNNTSPSMERQYPKIMDLDNVVCKM 699
+ +++++ + C
Sbjct: 560 EHQSFLQWIKDQR-------QLLVEVERMECAT 585
Score = 230 bits (588), Expect = 2e-64
Identities = 105/517 (20%), Positives = 173/517 (33%), Gaps = 68/517 (13%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S+ +F + SL++L L L L+ LK L N+ + + L P
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-----NVAHNLIQSFKL-P 142
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQ----TLNLSRNSIRDIDTLGFAVRRA 175
L L+ L++SS+ I+SI L + +L+LS N + I F
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----- 197
Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEIS---QIA 232
+ L L L +N + I L+ L E +
Sbjct: 198 -------------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
AL L L I L L + ++ LF+ L +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYL------------------DYYLDDIIDLFNCLTNVSS 286
Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
L S + F L L N + + K L L + +
Sbjct: 287 FSLVSVTIERVK----DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-- 340
Query: 353 IEDNAFLSLYNLHTIYLSENRIH--HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
+ + L +L + LS N + + G L L LS N ++ + S F
Sbjct: 341 ---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE 396
Query: 411 ALKELDLSSNAIVEI--PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
L+ LD + + ++ S L L LD+ NG F L L L++ N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 469 I-GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD-INGVFTY 526
N + EL +L L+LS+ ++ Q+ F L + + N +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 527 LAQLLWLNLSENHLVWFD---YAMVPGNLKWLDIHGN 560
L L L+ S NH++ P +L +L++ N
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 178 bits (453), Expect = 5e-47
Identities = 81/393 (20%), Positives = 142/393 (36%), Gaps = 38/393 (9%)
Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
+ + +++ L+LS N L + + +F LQ LDL
Sbjct: 10 ITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
I IED A+ SL +L T+ L+ N I + F+GL L KL L ++++ +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 409 CSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT----DL 462
LKEL+++ N I ++P S L L+ LDL N+I I + L Q+ L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH-QIEIGTFEKNKRLAAIRLDSNFLTDIN 521
L N + + G E+ L L L N + + L RL +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 522 GV----FTYLAQLLWLNLSENHLVWFDYAMVP--------GNLKWLDIHGNYISSLNNYY 569
+ + L L L + E L + DY + N+ + I + +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIY 629
++L+ + + + L + + + F +N + D +L +D+
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLS 355
Query: 630 ANDITKLDLTALRLKPVPQNKTLPEFYLGGNPF 662
N ++ + K L L N
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYL---DLSFNGV 385
Score = 141 bits (357), Expect = 8e-35
Identities = 86/517 (16%), Positives = 151/517 (29%), Gaps = 87/517 (16%)
Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
+IP L K LDL N + + + SF + +L L L I +
Sbjct: 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD-INGVFTYLAQLL 531
G L L L L+ N I + +G F L + L N +L L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIS 591
LN++ N + K NL
Sbjct: 128 ELNVAHNLIQ----------------------------SFKLPEYFSNL----------- 148
Query: 592 ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNL----ARVDIYANDITKLDLTALRLKPVP 647
++E L +++N I+S+ + +D+ N + + A +
Sbjct: 149 -----TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK----- 198
Query: 648 QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTH 707
L + L N + + + ++ L R +
Sbjct: 199 -EIRLHKLTLRNNFDSLNVMKTCIQGLAGL----------EVHRLVL-----GEFRNEGN 242
Query: 708 LPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEM-TCPKNCSCFH------------DQ 754
L + + + LC I F L + + ++ C N S F
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 755 NWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE 814
N+ ++ + P + N + V + L L N +
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE-YIANGTFNALI 873
+Q+ G +SL+ L L N + F LE+L L Q + ++ F +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 874 SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+L L + + N S L + + N F
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Score = 117 bits (296), Expect = 3e-27
Identities = 66/277 (23%), Positives = 106/277 (38%), Gaps = 55/277 (19%)
Query: 55 TVLLDSSITTKSFQNIYSLEELKISNCKL--VELPVDVFSGLRNLKRLTINTRNLQWDKS 112
T + S ++ SLE L +S L G +LK L ++ N
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FN------ 383
Query: 113 KKLDLVPGSLDGLRELQVLNISSSNIKSISD-DVFCSLANIQTLNLSRNSIRDIDTLGFA 171
+ + + GL +L+ L+ SN+K +S+ VF SL N+ L++S R F
Sbjct: 384 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF- 441
Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI 231
+G L +L ++ N + T+ R L L L ++ Q+
Sbjct: 442 ----------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 232 APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL 291
+P AF +LSSL++LN+S N+ SL + L L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK------------------------CLNSLQ 521
Query: 292 VLDLSSNHLSSNHIDETTFIGLIR-LIILNLSNNELT 327
VLD S NH+ + + L LNL+ N+
Sbjct: 522 VLDYSLNHIMT--SKKQELQHFPSSLAFLNLTQNDFA 556
Score = 101 bits (254), Expect = 4e-22
Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 5/167 (2%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
++ + + N +F G ++ L + NS E L F L +L L L +
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTN 896
F++L L L + N + + L SLQVL N + + + +
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFP 542
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
S L + L N F+C+C Q WI D + + + C
Sbjct: 543 SSLAFLNLTQNDFACTC-EHQSFLQWIKDQRQLLVEVERMECATPSD 588
Score = 67.7 bits (166), Expect = 2e-11
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 780 THVYLDGN--TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
+ L N +FK + G ++ L ++ + + + + F GL L+ L +++ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 408
Query: 838 TH-FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK-SFRAFDLNT 895
F +L L L + NG FN L SL+VL++ GN + +F
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 896 NSMLRKVYLGNNPFS 910
L + L
Sbjct: 469 LRNLTFLDLSQCQLE 483
Score = 60.8 bits (148), Expect = 2e-09
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 13/167 (7%)
Query: 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLH 831
++P+ + L N I F + L + N+ + ++ GL+ L+V
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
Query: 832 L---ENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN------GTFNALISLQVLQLDG 882
L E + ++ LE L L ++E R+ Y+ FN L ++ L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
++ + F N + + L N F + + SNK
Sbjct: 292 VTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Score = 50.0 bits (120), Expect = 4e-06
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 787 NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
+ + +F N+ S + + IE + + ++ Q L L N F +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK 325
Query: 847 NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL--KSFRAFDLNTNSMLRKVYL 904
+L++L+ + + L SL+ L L N L K + + L+ + L
Sbjct: 326 SLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 905 GNNPFS------CSCATLQEL 919
N L+ L
Sbjct: 381 SFNGVITMSSNFLGLEQLEHL 401
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 282 bits (723), Expect = 6e-84
Identities = 84/334 (25%), Positives = 142/334 (42%), Gaps = 11/334 (3%)
Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
ECS R + + + GI + L L N I + + F + L L
Sbjct: 8 ECSA--QDRAVLCHRKRFVAVP--EGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61
Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
++ N + ++ G F++ ++ + + N L + G+F L L LD+S N + +
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--L 119
Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
+ F L L L + +N+L I + F L L++L L ++ I A L+ L
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+ L I+ I + F LY L L +S L + + L L ++ +
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTA 238
Query: 425 IPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
+P A+ L +L+ L+L N IS IE L +L +++LV + + L L
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
VLN+S N++ +E F L + LDSN L
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 269 bits (689), Expect = 3e-79
Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 6/305 (1%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
+ R+LDL N+++TL F L+ L L N +S + P AF L +LR L + SN
Sbjct: 33 ETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L +P G+F+ +++++ +N +V L +F L L L++ N L I F
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFS 149
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
GL L L L LT I + L L L LR+ +I I D +F LY L + +S
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 372 -NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-AL 429
+ +T + GL L+ L++++ L + A ++ L+ L+LS N I I L
Sbjct: 210 WPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
EL L+ + L Q++ +E +F+ L L L + N + L + + + +LE L L
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328
Query: 490 KNKIH 494
N +
Sbjct: 329 SNPLA 333
Score = 247 bits (632), Expect = 1e-71
Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 11/326 (3%)
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
+ R + V++PEG+ + + + KN + L++ F L L+L+ N
Sbjct: 11 AQDRAVLCHRKRFVAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67
Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
+S+ ++ F L L L L +N L I F L L +LD+ N I + D F
Sbjct: 68 VSA--VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
LYNL ++ + +N + +I+ F+GL L +LTL L +I ++A + L L L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 420 NAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
I I + L LK L++ + + L LT L + N+ + +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAV 244
Query: 478 YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLS 536
L L LNLS N I IE + RL I+L L + F L L LN+S
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGN 560
N L + ++ NL+ L + N
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSN 330
Score = 233 bits (597), Expect = 5e-67
Identities = 85/388 (21%), Positives = 144/388 (37%), Gaps = 61/388 (15%)
Query: 289 QLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
Q + + I T +L+L N + ++ F L+ L+L
Sbjct: 12 QDRAVLCHRKRFVAVPEGIPTET-------RLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
N + +E AF +L+NL T+ L NR+ I +F GL L+KL +S N +V + F
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 407 KNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
++ LK L++ N +V I A S L L+ L L + ++ I + +L L LRL
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVF 524
NI + L L+VL +S L ++ + LT +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
+L L +LNLS N + I G+ + L
Sbjct: 245 RHLVYLRFLNLSYNPIST--------------IEGSMLHELLR----------------- 273
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
++ + + + V+P+ F + L +++ N +T L+ +
Sbjct: 274 --------------LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH-- 317
Query: 645 PVPQNKTLPEFYLGGNPFDCDCSMDWLP 672
L L NP CDC + W+
Sbjct: 318 ---SVGNLETLILDSNPLACDCRLLWVF 342
Score = 231 bits (591), Expect = 4e-66
Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 30/345 (8%)
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
+ V +P + + R L L N ++ L L+ L ++ + +
Sbjct: 19 HRKRFVAVPEGIPTETRLL-DLGKN--RIK-------TLNQDEFASFPHLEELELNENIV 68
Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
++ F +L N++TL L N ++ I F +G +L LD+
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF-----------------TGLSNLTKLDI 111
Query: 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258
S NK+ L DY L++L + +N++ I+ AF L+SL L + +L S+P
Sbjct: 112 SENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII 318
S + + + ++ + F +L +L VL++S + GL L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGL-NLTS 228
Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
L++++ LT + + LV+L+ L+L N I IE + L L I L ++ +
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
+ F GL L L +S N L ++ F + L+ L L SN +
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 194 bits (496), Expect = 1e-53
Identities = 69/316 (21%), Positives = 129/316 (40%), Gaps = 51/316 (16%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S++ +F N+++L L + + +L +P+ VF+GL N
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN----------------------- 105
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
L L+IS + I + D +F L N+++L + N + I F
Sbjct: 106 --------LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--------- 148
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
SG L L L L ++ + ++ L L L + I+ I +F L
Sbjct: 149 --------SGLNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
L++L IS + +++ + +L + L L L+LS N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
+S+ I+ + L+RL + L +L ++ F+ L +L+ L++ N + +E++ F
Sbjct: 260 IST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Query: 360 SLYNLHTIYLSENRIH 375
S+ NL T+ L N +
Sbjct: 318 SVGNLETLILDSNPLA 333
Score = 140 bits (355), Expect = 3e-35
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 4/167 (2%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C C + V C ++ VP IP + + L N KT+ F ++
Sbjct: 3 CPPRCEC----SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
L +N + + + FN L +L+ L L +N + F L L++L + EN+I
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+ + F L +L+ L++ N L + + L ++ L +
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Score = 106 bits (267), Expect = 4e-24
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
+ + + + N+ SL + + + + L L+ L+L N I+
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
G L +L E+ L ++ + F L L+VL + GN+L + ++ L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
Query: 900 RKVYLGNNPFSCSCATLQELQTWI 923
+ L +NP +C C L +
Sbjct: 323 ETLILDSNPLACDC-RLLWVFRRR 345
Score = 99.4 bits (248), Expect = 1e-21
Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Query: 767 QISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823
++ +P + T + + N + +++F N+ SL V ++ + I ++ F+G
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
L+SL+ L LE +T +L L L L+ I I + +F L L+VL++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 884 RLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+ L + + + +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLT 237
Score = 95.6 bits (238), Expect = 2e-20
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 5/148 (3%)
Query: 767 QISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823
+I + + D ++ + N I + F G ++ L + + I + +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQE-NRIEYIANGTFNALISLQVLQLDG 882
L L VL L + I Y F L +L L + ++ + L +L L +
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITH 233
Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
L + + LR + L NP S
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 88.2 bits (219), Expect = 3e-18
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 5/154 (3%)
Query: 762 DCSEQQISTVPPRI--PMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
+ + + + R +++ + L+ +IP ++ L + + I I +
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 819 QTFNGLSSLQVLHL-ENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
+F L L+VL + + L L+ L + + + L+ L+
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC 911
L L N + + L+ L+++ L +
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 275 bits (704), Expect = 3e-80
Identities = 130/617 (21%), Positives = 223/617 (36%), Gaps = 115/617 (18%)
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
++P ++ +NL L+ N L+ L S ELQVL++S I
Sbjct: 15 MELNFYKIPDNLPFSTKNL-DLSFN--PLR-------HLGSYSFFSFPELQVLDLSRCEI 64
Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
++I D + SL+++ TL L+ N I+ + F+
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--------------------------- 97
Query: 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258
LQ L ++ + L +L+ LN++ N + S
Sbjct: 98 ---------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII 318
+ F L L LDLSSN + S I T L ++ +
Sbjct: 143 EY-----------------------FSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPL 177
Query: 319 ----LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYL---- 369
L+LS N + I FK++ L +L LRNN + L L L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 370 --SENRIHHITAHLFNGLYVLSKLTL---SNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+E + GL L+ + ++ F + + L S I
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
+ S + L+L + + K+L++LT N GN S + +LPSLE
Sbjct: 297 VKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV--DLPSLE 350
Query: 485 VLNLSKNKIHQIEI--GTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVW 542
L+LS+N + + L + L N + ++ F L QL L+ ++L
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 543 FDYAMV---PGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEISELSIPN- 597
V NL +LDI + N I +GL S++ L + N E I
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 598 --SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEF 655
++ L ++ ++ + P F S+L +++ +N + + + +L +
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-----DRLTSLQKI 523
Query: 656 YLGGNPFDCDCSM-DWL 671
+L NP+DC C D+L
Sbjct: 524 WLHTNPWDCSCPRIDYL 540
Score = 269 bits (690), Expect = 2e-78
Identities = 142/669 (21%), Positives = 238/669 (35%), Gaps = 124/669 (18%)
Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
+ + +++ +T L+LS N L + + +F LQ LDL
Sbjct: 10 ITYQCMELNFYKIPDNLPFST-------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
I IED A+ SL +L T+ L+ N I + F+GL L KL L ++++ +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 409 CSALKELDLSSNAIVEI--PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
LKEL+++ N I P S L L+ LDL N+I I + L Q+ L L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS- 181
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVF 524
L+LS N ++ I+ G F K RL + L +NF + +
Sbjct: 182 -------------------LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
LA L L + + L N L+I+ ++
Sbjct: 222 QGLAGLEVHRLVLGEF--------RNEGNLEKFDKSALEGLCN-------LTIEEFRLAY 266
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
+ F +N++ + + I ++
Sbjct: 267 L---------------------DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK------- 298
Query: 645 PVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRG 704
N L F P + + + K
Sbjct: 299 DFSYNFGWQHLELVNCKFGQ------FPTLKLKSLKRLTFTSNKG--------------- 337
Query: 705 STHLPASEAAPS-QYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDC 763
+ + PS ++L D ++ CS + +D
Sbjct: 338 -GNAFSEVDLPSLEFL----------------DLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 764 SEQQISTVPPRIP--MDATHVYLDGNTFKTIPNH-VFIGRKNMLSLYVNNSQIEVILNQT 820
S + T+ H+ + K + VF+ +N++ L ++++ V N
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 821 FNGLSSLQVLHLENNLITHFY-GYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQ 879
FNGLSSL+VL + N + F L L+ L L + ++E ++ FN+L SLQVL
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 880 LDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCV 939
+ N+LKS + + L+K++L NP+ CSC + L W+ NS K + S
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG- 559
Query: 940 IDESSPPIR 948
S P+R
Sbjct: 560 ---SGKPVR 565
Score = 261 bits (669), Expect = 1e-75
Identities = 115/572 (20%), Positives = 214/572 (37%), Gaps = 74/572 (12%)
Query: 15 ESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQ 68
E + I+ C N +P +L LD + + SF
Sbjct: 5 EVVPNITYQCM--------ELNFYKIPDNLPFSTKN-------LDLSFNPLRHLGSYSFF 49
Query: 69 NIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLREL 128
+ L+ L +S C++ + + L +L L + +Q L G+ GL L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLSSL 102
Query: 129 QVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECS 188
Q L +N+ S+ + L ++ LN++ N I+ L +
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTN----------- 150
Query: 189 GGMDLRILDLSHNKLRTLGDYSGITKFRRLQN----LHLENNEISQIAPNAFVALSSLRI 244
L LDLS NK++++ + ++ L L N ++ I P AF + L
Sbjct: 151 ----LEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHK 204
Query: 245 LNISSNHL-VSLPEGLFSSCRDISEI------YAQKNSLVELSRGLFHKLEQL--LVLDL 295
L + +N +++ + + + + +L + + L L L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED 355
+ + I F L + +L + + R+ ++ Q L+L N G
Sbjct: 265 AYLDYYLDDII-DLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFP- 320
Query: 356 NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID--SKAFKNCSALK 413
L L +L + + N+ + + L L L LS N L S++ ++LK
Sbjct: 321 --TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS-FKNLQQLTDLRLVDNNIGNL 472
LDLS N ++ + S L L+ LD + + ++ S F +L+ L L + +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
+G+ L SLEVL ++ N + + F + + L + L L + F L+ L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 531 LWLNLSENHLVWFDYAMVPG--NLKWLDIHGN 560
LN++ N L + +L+ + +H N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 114 bits (288), Expect = 2e-26
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 9/170 (5%)
Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
C C E +P +P ++ L N + + ++ F + L
Sbjct: 3 CVE----VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 808 VNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANG 867
++ +I+ I + + LS L L L N I F L L +L E + + N
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 868 TFNALISLQVLQLDGNRLKSF---RAFDLNTNSMLRKVYLGNNPFSCSCA 914
L +L+ L + N ++SF F TN L + L +N
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYC 166
Score = 51.3 bits (123), Expect = 2e-06
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 31/105 (29%)
Query: 58 LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
+ F + +L L +S C+L +L F+ L +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS--------------------- 495
Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
LQVLN++S+ +KS+ D +F L ++Q + L N
Sbjct: 496 ----------LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 271 bits (694), Expect = 3e-76
Identities = 84/510 (16%), Positives = 176/510 (34%), Gaps = 55/510 (10%)
Query: 26 LNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITT--KSFQNIYSLEELKISNCKL 83
+ L N P +++++ L + IT K+ Q + L+ + +N
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460
Query: 84 VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISD 143
+ ++ + D +K+ + S L++L + + + +
Sbjct: 461 TYDN------------IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508
Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203
D L +Q+LN++ N L R + + ++G K ++I + +N L
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK--------IQIFYMGYNNL 560
Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSC 263
+ + K +L L +N++ + AF L L + N + +PE +
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618
Query: 264 RDISEIYAQKNSLVELSRGL-FHKLEQLLVLDLSSNHLSSNHIDETTFIG---LIRLIIL 319
+ + N L + + + +D S N + S + + + I +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678
Query: 320 NLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA 379
LS NE+ + + F + + L NN + I +N+
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN--------------- 723
Query: 380 HLFNGLYVLSKLTLSNNLLVNI-DSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL 438
+ Y+L+ + L N L ++ D L +D+S N P+ LK
Sbjct: 724 --YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781
Query: 439 DLGE------NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
+ N+I + L L++ N+I + + P L +L+++ N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNP 838
Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDING 522
I++ + L + DI G
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868
Score = 233 bits (596), Expect = 1e-63
Identities = 93/617 (15%), Positives = 191/617 (30%), Gaps = 96/617 (15%)
Query: 109 WDKSKKLDL---VPG-SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRD 164
W+ +K+LD+ PG LD + L+++ K D L ++ L+ +S
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361
Query: 165 IDTLGFAVRRASAESN--------SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR 216
L S +K+ L + DL + + + I K
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421
Query: 217 RLQ----NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272
R+ + N I+ I A L+ L+I+ +++ + +
Sbjct: 422 RISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY---- 476
Query: 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA- 331
E + L+ L ++L + + + + L L LN++ N
Sbjct: 477 -AKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDF-LYDLPELQSLNIACNRGISAAQL 533
Query: 332 --------KTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LYNLHTIYLSENRIHHITAHLF 382
+Q + N++ +A L + L + N++ H+ A F
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--F 591
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA--LSELPFLKTLDL 440
L+ L L N + I ++ L S N + IP+ + + ++D
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651
Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
N+I ++ + + LS N+I +
Sbjct: 652 SYNKIGSEGRNISCSMDDYK-------------------GINASTVTLSYNEIQKFPTEL 692
Query: 501 FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560
F ++ I L +N +T I + N L +D+ N
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY--------------LLTTIDLRFN 738
Query: 561 YISSLNNYYEIKDGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKS------VK 613
++SL++ + + N+D S+N ++ + ++ I +
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 614 PHTFFDKSNLARVDIYANDITKLD----------------LTALRLKPVPQNKTLPEFYL 657
P +L ++ I +NDI K+D ++ + V + L
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858
Query: 658 GGN--PFDCDCSMDWLP 672
+ C +
Sbjct: 859 LYDKTQDIRGCDALGIE 875
Score = 193 bits (493), Expect = 9e-51
Identities = 65/446 (14%), Positives = 145/446 (32%), Gaps = 47/446 (10%)
Query: 34 GSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSG 93
S ++ + D ++ S+ N+ L ++++ NC + D
Sbjct: 457 NSPFTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513
Query: 94 LRNLKRLTINTRNLQ--WDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDV-FCSLA 150
L L+ L I + D ++Q+ + +N++ +
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
+ L+ N +R ++ G V+ L L L +N++ + +
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVK-------------------LTDLKLDYNQIEEIPEDF 614
Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVA-LSSLRILNISSNHLVSLPEGLFSS-----CR 264
+++ L +N++ I + + ++ S N + S + S
Sbjct: 615 C-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 265 DISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS-----NHIDETTFIGLIRLIIL 319
+ S + N + + LF + + LS+N ++S + + L +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733
Query: 320 NLSNNELTRI-DAKTFKDLVFLQRLDLRNNSIGYIEDNAF-----LSLYNLHTIYLSENR 373
+L N+LT + D L +L +D+ N + H NR
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793
Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSEL 432
I L +L + +N + +D K L LD++ N + I +++
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPY 850
Query: 433 PFLKTLDLGENQISKIENGSFKNLQQ 458
L ++ I +++
Sbjct: 851 IEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 77.6 bits (191), Expect = 2e-14
Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 23/176 (13%)
Query: 767 QISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFN 822
QI +P + N K IPN M S+ + ++I
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 823 GLS-----SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI-------ANGTFN 870
+ + + L N I F F +S + L N + I +G +
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725
Query: 871 ALISLQVLQLDGNRLKSF-RAFDLNTNSMLRKVYLGNNPFS------CSCATLQEL 919
L + L N+L S F T L + + N FS + + L+
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781
Score = 74.5 bits (183), Expect = 1e-13
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 780 THVYLDGNTFKTIPNHV---------FIGRKNMLSLYVNNSQIEVI-LNQTFNGLSSLQV 829
+ + N + + Y+ + +E + + + L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 830 LHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF- 888
L +N + H F KL++L L N+IE I ++ L N+LK
Sbjct: 578 LDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635
Query: 889 RAFDLNTNSMLRKVYLGNNPFS 910
F+ + ++ V N
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIG 657
Score = 58.7 bits (142), Expect = 1e-08
Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 13/146 (8%)
Query: 780 THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL-- 836
T + L N ++ + + ++ V+ + Q N S L+ + +
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDA 789
Query: 837 ----ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RA 890
I + L +L + N I + L +L + N S +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISIDVTS 846
Query: 891 FDLNTNSMLRKVYLGNNPFSCSCATL 916
+ + + C L
Sbjct: 847 VCPYIEAGMYVLLYDKTQDIRGCDAL 872
Score = 49.1 bits (117), Expect = 1e-05
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 35/172 (20%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF-- 840
K I I K+ + ++I I ++ L+ LQ+++ N+ T+
Sbjct: 408 INRNPEMKPIKKDSRISLKD-TQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNI 465
Query: 841 -----------------YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
+ NL+ L+++ L L LQ L + N
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525
Query: 884 RLKSFRAFDLNTNSM---------LRKVYLGNN-----PFSCSCATLQELQT 921
R S + + ++ Y+G N P S S + +L
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Score = 39.5 bits (92), Expect = 0.009
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY- 863
L + + + L+ L+VL + T D +++RI
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386
Query: 864 IANGTFNALISLQVLQLDGNRLKSF 888
+ L + L + +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRN 411
Score = 37.9 bits (88), Expect = 0.024
Identities = 9/73 (12%), Positives = 20/73 (27%)
Query: 835 NLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN 894
++ G + DN +++ L L + L L+VL + +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 895 TNSMLRKVYLGNN 907
+
Sbjct: 369 EELTPDMSEERKH 381
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 249 bits (637), Expect = 3e-74
Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 39/309 (12%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
D +LDL +NK+ + D + L L L NN+IS+I+P AF L L L +S N
Sbjct: 53 DTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L LPE + + + E+ +N + ++ + +F+ L Q++V++L +N L S+ I+ F
Sbjct: 112 LKELPEKMPKTLQ---ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
G+ +L + +++ +T I +L ++L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPP---------------------------SLTELHLDG 201
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
N+I + A GL L+KL LS N + +D+ + N L+EL L++N +V++P L++
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 432 LPFLKTLDLGENQISKIENGSF------KNLQQLTDLRLVDNNI--GNLSSGMLYELPSL 483
+++ + L N IS I + F + + L N + + +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
Query: 484 EVLNLSKNK 492
+ L K
Sbjct: 322 AAVQLGNYK 330
Score = 224 bits (573), Expect = 2e-65
Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 24/310 (7%)
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
LR++ S L +P+ L D + + Q N + E+ G F L+ L L L +N +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
S I F L++L L LS N+L + K K L Q L + N I + + F
Sbjct: 89 SK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHENEITKVRKSVFNG 143
Query: 361 LYNLHTIYLSENRIH--HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
L + + L N + I F G+ LS + +++ + I + L EL L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLD 200
Query: 419 SNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
N I ++ + +L L L L L N IS ++NGS N L +L L +N + + G L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-L 259
Query: 478 YELPSLEVLNLSKNKIHQIEIGTF------EKNKRLAAIRLDSNFLTDIN---GVFTYLA 528
+ ++V+ L N I I F K + + L SN + F +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319
Query: 529 QLLWLNLSEN 538
+ L
Sbjct: 320 VRAAVQLGNY 329
Score = 170 bits (434), Expect = 5e-47
Identities = 70/332 (21%), Positives = 133/332 (40%), Gaps = 59/332 (17%)
Query: 34 GSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQNIYSLEELKISNCKLVELP 87
L VP DL T LLD + I F+N+ +L L + N K+ ++
Sbjct: 40 DLGLEKVPKDLPP-------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 88 VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFC 147
F+ L L+RL ++ +N +L +P + + LQ L + + I + VF
Sbjct: 93 PGAFAPLVKLERLYLS-KN-------QLKELPEKM--PKTLQELRVHENEITKVRKSVFN 142
Query: 148 SLANIQTLNLSRNSIRD--IDTLGFAVRRASAESNSGEKIECSGGMD-LRILDLSHNKLR 204
L + + L N ++ I+ F GM L + ++ +
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQ------------------GMKKLSYIRIADTNIT 184
Query: 205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCR 264
T+ L LHL+ N+I+++ + L++L L +S N + ++ G ++
Sbjct: 185 TIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 265 DISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI------GLIRLII 318
+ E++ N LV++ GL + + V+ L +N++S+ I F
Sbjct: 241 HLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSG 297
Query: 319 LNLSNNEL--TRIDAKTFKDLVFLQRLDLRNN 348
++L +N + I TF+ + + L N
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 164 bits (416), Expect = 1e-44
Identities = 77/348 (22%), Positives = 131/348 (37%), Gaps = 82/348 (23%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
++ S+ L ++ D LDL+NN I I+D F +L NLHT+ L N+I I
Sbjct: 35 VVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLK 436
+ F L L +L LS N L + K K L+EL + N I ++ + L +
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMI 148
Query: 437 TLDLGENQI--SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
++LG N + S IENG+F+ +++L+ +R+ D NI + G+ PSL L+L NKI
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT 205
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
+++ + + LA + L N ++ + N +L+
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISA-------VDNGSLANTP--------------HLRE 244
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
L ++ N + + P
Sbjct: 245 LHLNNNKLVKV------------------------------------------------P 256
Query: 615 HTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKT-LPEFYLGGNP 661
D + V ++ N+I+ + K L NP
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Score = 137 bits (348), Expect = 1e-35
Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 31/266 (11%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
C L+ + S + ++P L P LDL N+I++I++G FKNL+ L L L++N
Sbjct: 30 QCH-LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
I +S G L LE L LSKN++ ++ K L +R+ N +T + VF
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNG 143
Query: 527 LAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSLNNYYEIKDGL--SIK 578
L Q++ + L N L + G L ++ I I++ I GL S+
Sbjct: 144 LNQMIVVELGTNPLK--SSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLT 195
Query: 579 NLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
L N+I ++ S+ ++ L ++ N I +V + + +L + + N + K+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPF 662
+ +K + YL N
Sbjct: 256 PGG------LADHKYIQVVYLHNNNI 275
Score = 130 bits (328), Expect = 7e-33
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
CP C C + VV CS+ + VP +P D + L N I + F KN
Sbjct: 24 VCPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ +L + N++I I F L L+ L+L N + L+ EL + EN I
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEIT 134
Query: 863 YIANGTFNALISLQVLQLDGNRLKSF----RAFDLNTNSMLRKVYLGNNPFS 910
+ FN L + V++L N LKS AF L + + + +
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIADTNIT 184
Score = 95.1 bits (237), Expect = 5e-21
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 13/151 (8%)
Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
I+T+P +P T ++LDGN + G N+ L ++ + I + N +
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF------NALISLQVLQL 880
L+ LHL NN + G + + + +YL N I I + F S + L
Sbjct: 242 LRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 881 DGNRLKSFR----AFDLNTNSMLRKVYLGNN 907
N ++ + F V LGN
Sbjct: 301 FSNPVQYWEIQPSTFRCVYV--RAAVQLGNY 329
Score = 94.3 bits (235), Expect = 8e-21
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 24/167 (14%)
Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE--VILNQTFNGL 824
Q+ +P ++P + + N + VF G M+ + + + ++ I N F G+
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 825 SSLQV---------------------LHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
L LHL+ N IT L L++L L N I
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+ NG+ L+ L L+ N+L L + ++ VYL NN S
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNIS 276
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 249 bits (638), Expect = 2e-73
Identities = 85/387 (21%), Positives = 157/387 (40%), Gaps = 44/387 (11%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
+I+ ++ +R L + + FR+++ L+L + +I +I AF +++ L + N +
Sbjct: 47 QKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
LP +F + ++ + ++N L L RG+FH +L L +S+N+L I++ TF
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--RIEDDTFQA 163
Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
L L LS+N LT +D L ++ N + + + + S N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI-----PIAVEELDASHN 215
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
I+ + + L L L N + + L
Sbjct: 216 SINVVRGPVNVE---------------------------LTILKLQHNNLTDTA-WLLNY 247
Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
P L +DL N++ KI F +Q+L L + +N + L + +P+L+VL+LS N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH 306
Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL 552
+ +E + RL + LD N + + + L L LS N + N+
Sbjct: 307 LLHVERNQPQ-FDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNV 363
Query: 553 KWLDIHGNYISSLNNYYEIKDGLSIKN 579
+ Y+++ GL K
Sbjct: 364 ARPAVDDADQ-HCKIDYQLEHGLCCKE 389
Score = 241 bits (616), Expect = 1e-70
Identities = 82/392 (20%), Positives = 153/392 (39%), Gaps = 45/392 (11%)
Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
++H++ + L++ +I+ ++ + LP L S
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS--------------- 67
Query: 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDL 337
Q+ +L+L+ + ID F + L + N + + F+++
Sbjct: 68 ---------FRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 338 VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397
L L L N + + F + L T+ +S N + I F L L LS+N
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
L ++D + L ++S N + S L+ ++ LD N I+ + L
Sbjct: 177 LTHVDLSLIPS---LFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGPVNVELT 229
Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
L +L NN+ + + L P L ++LS N++ +I F K +RL + + +N L
Sbjct: 230 IL---KLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 518 TDINGVFTYLAQLLWLNLSENHLVWFDYAMVP-GNLKWLDIHGNYISSLNNYYEIKDGL- 575
+N + L L+LS NHL+ + L+ L + N I +L
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHH 339
Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFINNN 607
++KNL SHN S ++ +V +++
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371
Score = 224 bits (574), Expect = 7e-65
Identities = 78/393 (19%), Positives = 142/393 (36%), Gaps = 48/393 (12%)
Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
+ D+ + + + I L I+ N+ + ++ A ++ L+L +
Sbjct: 20 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
I I+ AF + + +Y+ N I ++ H+F + +L+ L L N L ++ F N
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 409 CSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L L +S+N + I L+ L L N+++ ++ +L + N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN 196
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
+ L+ ++E L+ S N I+ + L ++L N LTD
Sbjct: 197 LLSTLAI-----PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT-AWLLNY 247
Query: 528 AQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
L+ ++LS N L Y L+ L I N + +LN Y + ++K LD SHN
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHN 305
Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
+L + L + + N I L L+
Sbjct: 306 HLLHV-----------------------ERNQPQFDRLENLYLDHNSIVTLKLSTH---- 338
Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNT 678
TL L N +DC+ +
Sbjct: 339 ----HTLKNLTLSHNDWDCNSLRALFRNVARPA 367
Score = 194 bits (496), Expect = 1e-54
Identities = 71/359 (19%), Positives = 142/359 (39%), Gaps = 46/359 (12%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+ + +E L +++ ++ E+ F+ +++L + ++ L P
Sbjct: 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPP 110
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
+ L VL + +++ S+ +F + + TL++S N++ I+ F
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--------- 161
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
L+ L LS N+L + + L + ++ N +S +A
Sbjct: 162 --------QATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAI-----P 204
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
++ L+ S N + + + ++ + Q N+L + L+ +DLS N
Sbjct: 205 IAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 259
Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
L I F+ + RL L +SNN L ++ + + L+ LDL +N + ++E N
Sbjct: 260 LE--KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP- 315
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKA-FKNCSALKELDL 417
L +YL N I + + L LTLS+N +A F+N + D
Sbjct: 316 QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371
Score = 100 bits (250), Expect = 2e-22
Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLS 805
+ + +D + +D Q + I ++ V +T + +P + + +
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
L +N+ QIE I F ++Q L++ N I + + F N+ L+ L L+ N + +
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
G F+ L L + N L+ + L+ + L +N +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Score = 98.2 bits (245), Expect = 9e-22
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI 813
N +V + +P + + L+ + I + F + LY+ + I
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 814 EVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALI 873
+ F + L VL LE N ++ F N KL+ L + N +E I + TF A
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 874 SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
SLQ LQL NRL DL+ L + N S
Sbjct: 166 SLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS 199
Score = 77.4 bits (191), Expect = 6e-15
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
V L N + I H F+ + + LY++N+++ + N + +L+VL L +N + H
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH 309
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
++L LYL N I + T + +L+ L L N L N +
Sbjct: 310 VER-NQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRN--V 363
Query: 900 RKVYLGNNPFSCSC 913
+ + + C
Sbjct: 364 ARPAVDDADQHCKI 377
Score = 75.9 bits (187), Expect = 2e-14
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
+++ V + H + N T+ + + L +++ I V+
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSINVVRGPVN---VE 227
Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
L +L L++N +T N L E+ L N +E I F + L+ L + NRL
Sbjct: 228 LTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 887 SFRAFDLNTNSMLRKVYLGNN 907
+ L+ + L +N
Sbjct: 286 ALNL-YGQPIPTLKVLDLSHN 305
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 235 bits (602), Expect = 2e-69
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 40/309 (12%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
D +LDL +N + L + L L L NN+IS+I AF L L+ L IS NH
Sbjct: 55 DTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
LV +P L SS E+ N + ++ +G+F L + +++ N L ++ + F
Sbjct: 114 LVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
GL +L L +S +LT I + L+ ++L
Sbjct: 171 GL-KLNYLRISEAKLTGIPKDLPE---------------------------TLNELHLDH 202
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
N+I I L +L L +N + I++ + L+EL L +N + +P+ L +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262
Query: 432 LPFLKTLDLGENQISKIENGSFKNLQ------QLTDLRLVDNNI--GNLSSGMLYELPSL 483
L L+ + L N I+K+ F + + L +N + + +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 484 EVLNLSKNK 492
+ K
Sbjct: 323 LAIQFGNYK 331
Score = 180 bits (458), Expect = 3e-50
Identities = 70/307 (22%), Positives = 122/307 (39%), Gaps = 30/307 (9%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
++ S+ L + + D LDL+NN I + + F L +L+ + L N+I I
Sbjct: 37 VVQCSDLGLKAVPKEISPDT---TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLK 436
F+ L L KL +S N LV I + L EL + N I ++P S L +
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMN 150
Query: 437 TLDLGENQI--SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
+++G N + S E G+F L+ L LR+ + + + + +L L+L NKI
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ 206
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVP-GNL 552
IE+ + +L + L N + I NG ++L L L+L N L + L
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266
Query: 553 KWLDIHGNYISSLNNY-----YEIKDGLSIKNLDASHNRILEISELSIPNSV-------E 600
+ + +H N I+ + + +N + + +
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP---VPYWEVQPATFRCVTDRL 323
Query: 601 VLFINNN 607
+ N
Sbjct: 324 AIQFGNY 330
Score = 171 bits (435), Expect = 4e-47
Identities = 73/356 (20%), Positives = 121/356 (33%), Gaps = 82/356 (23%)
Query: 34 GSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQNIYSLEELKISNCKLVELP 87
L VP ++ T LLD S + F+ + L L + N K+ ++
Sbjct: 42 DLGLKAVPKEISP-------DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94
Query: 88 VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFC 147
FS LR L++L I+ +N L +P +L L L I + I+ + VF
Sbjct: 95 EKAFSPLRKLQKLYIS-KN-------HLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFS 144
Query: 148 SLANIQTLNLSRNSIRD--IDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
L N+ + + N + + + F G+ L L +S KL
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFD------------------GLKLNYLRISEAKLTG 186
Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRD 265
+ L LHL++N+I I + S L L + N + + G S
Sbjct: 187 IPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--- 239
Query: 266 ISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE 325
L L L L +N LS L L ++ L N
Sbjct: 240 ---------------------LPTLRELHLDNNKLSRV---PAGLPDLKLLQVVYLHTNN 275
Query: 326 LTRIDAKTFKDLVF------LQRLDLRNNSIGY--IEDNAFLSLYNLHTIYLSENR 373
+T++ F + F + L NN + Y ++ F + + I +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 136 bits (345), Expect = 3e-35
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 26/262 (9%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
C L+ + S + +P +S P LDL N IS++ FK LQ L L LV+N
Sbjct: 33 CH-LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYL 527
I + L L+ L +SKN + +I L +R+ N + + GVF+ L
Sbjct: 90 ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGL 146
Query: 528 AQLLWLNLSENHLVWF---DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL--SIKNLDA 582
+ + + N L A L +L I ++ I L ++ L
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG------IPKDLPETLNELHL 200
Query: 583 SHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTA 640
HN+I I + + L + +N I+ ++ + L + + N ++++
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG- 259
Query: 641 LRLKPVPQNKTLPEFYLGGNPF 662
+P K L YL N
Sbjct: 260 -----LPDLKLLQVVYLHTNNI 276
Score = 125 bits (316), Expect = 2e-31
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
CP C C + VV CS+ + VP I D T + L N + F G ++
Sbjct: 26 MCPFGCHC------HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQH 79
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ +L + N++I I + F+ L LQ L++ N + +L EL + +NRI
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIR 136
Query: 863 YIANGTFNALISLQVLQLDGNRLKSF----RAFDLNTNSMLRKVYLGNN 907
+ G F+ L ++ +++ GN L++ AFD L + +
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD---GLKLNYLRISEA 182
Score = 98.6 bits (246), Expect = 3e-22
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 23/166 (13%)
Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE--VILNQTFNGL 824
+ +PP +P + + N + +P VF G +NM + + + +E F+GL
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 825 S--------------------SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
+L LHL++N I + KL L L N+I I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 865 ANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
NG+ + L +L+ L LD N+L A L +L+ VYL N +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNIT 277
Score = 97.8 bits (244), Expect = 6e-22
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 760 VVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQ 819
+ SE +++ +P +P ++LD N + I + + L + ++QI +I N
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235
Query: 820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF------NALI 873
+ + L +L+ LHL+NN ++ +L+ L +YL N I + F
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 874 SLQVLQLDGNRLKSFR----AFDLNTNSMLRKVYLGNN 907
+ L N + + F T+ + GN
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTD--RLAIQFGNY 330
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 242 bits (619), Expect = 9e-69
Identities = 102/518 (19%), Positives = 199/518 (38%), Gaps = 59/518 (11%)
Query: 135 SSNIKSISDDVFCSLANIQTLN-LSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDL 193
N+K + C +N+Q I + +N
Sbjct: 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN------------Q 53
Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
+I+ ++ +R L + FR+++ L+L + +I +I AF +++ L + N +
Sbjct: 54 KIVTFKNSTMRKLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL 313
LP +F + ++ + ++N L L RG+FH +L L +
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM------------------ 154
Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR 373
SNN L RI+ TF+ LQ L L +N + +++ + SL++ + +S N
Sbjct: 155 --------SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYNL 203
Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELP 433
+ + + + +L S+N + + L L L N + + L P
Sbjct: 204 LSTLAIPIA-----VEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYP 254
Query: 434 FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
L +DL N++ KI F +Q+L L + +N + L + +P+L+VL+LS N +
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 313
Query: 494 HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK 553
+E + RL + LD N + + + L L LS N + N+
Sbjct: 314 LHVERNQP-QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370
Query: 554 WLDIHGNYISSLNNYYEIKDGLSIKNLDASH-NRILE-ISELSIPNSVEVLFINNNLIKS 611
+ Y+++ GL K D + +R+L+ I+ S+ V+ + +
Sbjct: 371 RPAVDDADQ-HCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDT 429
Query: 612 VKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN 649
+ + + +L+ L+ Q
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467
Score = 229 bits (585), Expect = 3e-64
Identities = 108/635 (17%), Positives = 198/635 (31%), Gaps = 81/635 (12%)
Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
+ D+ + + + I L I+ N+ + ++ A ++ L+L +
Sbjct: 26 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
I I+ AF + + +Y+ N I ++ H+F + +L+ L L N L ++ F N
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 409 CSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L L +S+N + I L+ L L N+++ ++ +L + N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN 202
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
+ L+ ++E L+ S N I+ + L ++L N LTD
Sbjct: 203 LLSTLA-----IPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT-AWLLNY 253
Query: 528 AQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
L+ ++LS N L Y L+ L I N + +LN Y + ++K LD SHN
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHN 311
Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
+L + L + + N I L L+
Sbjct: 312 HLLHV-----------------------ERNQPQFDRLENLYLDHNSIVTLKLSTH---- 344
Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGS 705
TL L N +DC+ + ++ L++ +C +
Sbjct: 345 ----HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400
Query: 706 THLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSE 765
A + + CS N ++
Sbjct: 401 LDRLLQYIALTSVVEKVQ-------------------RAQGRCSATDTINSVQSLSHYIT 441
Query: 766 QQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
QQ V + + N + + L+ +GL+
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA 501
Query: 826 SLQVL-----------HLENNLITHFYGYEFDNLEKLSELYLQEN--RIEYIANGTFNAL 872
T E D +K +E QEN + + N
Sbjct: 502 RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561
Query: 873 ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
Q L ++K A N N R+V ++
Sbjct: 562 ELRQETSLKRQKVKQLEA-KKNRNPDTRRVSHHHH 595
Score = 220 bits (562), Expect = 3e-61
Identities = 79/396 (19%), Positives = 156/396 (39%), Gaps = 32/396 (8%)
Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSN-- 303
N PE + + ++ ++ E + + + ++
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 304 -HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362
+ ++ +LNL++ ++ ID F +Q+L + N+I Y+ + F ++
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
L + L N + + +F+ L+ L++SNN L I+ F+ ++L+ L LSSN +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 423 VEIP-----------------SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
+ S L+ ++ LD N I+ + L L+L
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI---LKLQ 240
Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
NN+ + + L P L ++LS N++ +I F K +RL + + +N L +N
Sbjct: 241 HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298
Query: 526 YLAQLLWLNLSENHLVWFDYAMVP-GNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDAS 583
+ L L+LS NHL+ + L+ L + N I +L ++KNL S
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHHTLKNLTLS 353
Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFD 619
HN S ++ +V +++ +
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
Score = 210 bits (536), Expect = 8e-58
Identities = 85/417 (20%), Positives = 154/417 (36%), Gaps = 64/417 (15%)
Query: 76 LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
+ + DV+ G ++ L N + + + S L LD R++++LN++
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDI-TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84
Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRI 195
I+ I F IQ L + N+IR + F
Sbjct: 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ------------------------ 120
Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
L L LE N++S + F L L++S+N+L +
Sbjct: 121 ------------------NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162
Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
+ F + + + N L + L L ++S N L +T I
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL-------STLAIPIA 212
Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
+ L+ S+N + + + L L L++N++ + L+ L + LS N +
Sbjct: 213 VEELDASHNSINVVRGPVNVE---LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE 267
Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFL 435
I H F + L +L +SNN LV ++ + LK LDLS N ++ + + L
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKN 491
+ L L N I ++ + L+ LT L N+ N + + V + ++
Sbjct: 327 ENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRALFRNVARPAVDDADQH 380
Score = 200 bits (511), Expect = 1e-54
Identities = 78/469 (16%), Positives = 169/469 (36%), Gaps = 58/469 (12%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+ + +E L +++ ++ E+ F+ +++L + ++ L P
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPP 116
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
+ L VL + +++ S+ +F + + TL++S N++ I+ F
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--------- 167
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
L+ L LS N+L + + L + ++ N +S +A
Sbjct: 168 --------QATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAI-----P 210
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
++ L+ S N + + + ++ + Q N+L + L+ +DLS N
Sbjct: 211 IAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 265
Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
L I F+ + RL L +SNN L ++ + + L+ LDL +N + ++E N
Sbjct: 266 LE--KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP- 321
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN---------LLVNIDSKAFKNCS 410
L +YL N I + + L LTLS+N L N+ A +
Sbjct: 322 QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 378
Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
++D + + + + + + + V +
Sbjct: 379 QHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH 438
Query: 471 NLSSGMLYELPSLEVLNLSKNKIH----QIEIGTFEKNKRLAAIRLDSN 515
++ L E L N++ Q+ ++ + L + + +
Sbjct: 439 YITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487
Score = 98.1 bits (244), Expect = 5e-21
Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLS 805
+ + +D + +D Q + I ++ V +T + +P + + +
Sbjct: 20 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
L +N+ QIE I F ++Q L++ N I + + F N+ L+ L L+ N + +
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
G F+ L L + N L+ + L+ + L +N +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Score = 94.2 bits (234), Expect = 8e-20
Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 12/178 (6%)
Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
I+ V + ++ T + L N + ++ + ++ +++E I+ F +
Sbjct: 222 SINVVRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
L+ L++ NN + Y + L L L N + ++ L+ L LD N +
Sbjct: 280 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIV 337
Query: 887 SFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESS 944
+ L+T+ L+ + L +N + C+ L+ L + + D D C ID
Sbjct: 338 TL---KLSTHHTLKNLTLSHNDWDCNS--LRALFRNVARPAV---DDADQHCKIDYQL 387
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 232 bits (594), Expect = 7e-67
Identities = 97/399 (24%), Positives = 162/399 (40%), Gaps = 41/399 (10%)
Query: 179 SNSGEKIECSGG---------MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEIS 229
S G C + +DLS N + L + S ++ + LQ L +E
Sbjct: 9 SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPG 67
Query: 230 Q-IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL--VELSRGLFHK 286
I N F LSSL IL + N + L G F+ ++ + + +L LS F
Sbjct: 68 LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV--FLQRLD 344
L L +L L N++ + F+ + R +L+L+ N++ I + + L
Sbjct: 128 LTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Query: 345 LRNNSIGYIEDN--------AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL----- 391
L + ++ + + ++ T+ LS N A F +K+
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 392 --------TLSNNLLVNIDSKAFKN--CSALKELDLSSNAIVEIPS-ALSELPFLKTLDL 440
+ + + D+ FK S +K DLS + I + S L+ L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
+N+I+KI++ +F L L L L N +G++ S M L LEVL+LS N I + +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366
Query: 501 FEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
F L + LD+N L + +G+F L L + L N
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 214 bits (546), Expect = 1e-60
Identities = 93/413 (22%), Positives = 157/413 (38%), Gaps = 53/413 (12%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+ + +S + EL FS L++L+ L + + L + + GL L +L
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG------LVIRNNTFRGLSSLIIL 84
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
+ + + F LAN++ L L++ ++ G + ++
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-------------- 130
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS--LRILNISS 249
L +L L N ++ + S RR L L N++ I + +L +SS
Sbjct: 131 -LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID--- 306
L + E + G K + LDLS N +
Sbjct: 190 ITLQDMNEYWLGWEK----------------CGNPFKNTSITTLDLSGNGFKESMAKRFF 233
Query: 307 --------ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF--LQRLDLRNNSIGYIEDN 356
++ + + + + D TFK L ++ DL + I + +
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293
Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
F +L + L++N I+ I + F GL L KL LS N L +IDS+ F+N L+ LD
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353
Query: 417 LSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
LS N I + + LP LK L L NQ+ + +G F L L + L N
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
Score = 200 bits (510), Expect = 9e-56
Identities = 85/400 (21%), Positives = 153/400 (38%), Gaps = 53/400 (13%)
Query: 60 SSITTKSFQNIYSLEELKISNCKL-VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
+ + SF + L+ LK+ + + + F GL +L L ++ L
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-------QLE 95
Query: 119 PGSLDGLRELQVLNISSSNIKS--ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176
G+ +GL L+VL ++ N+ +S + F L +++ L L N+I+ I F +
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155
Query: 177 AESNSGEKIECSGGMDLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPN 234
+LDL+ NK++++ D + L L + + +
Sbjct: 156 ----------------FHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEY 198
Query: 235 --------AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
+S+ L++S N F ++I + L
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS-----------LILS 247
Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIR--LIILNLSNNELTRIDAKTFKDLVFLQRLD 344
+ + D TF GL + +LS +++ + F L++L
Sbjct: 248 NSYNMGSSFGHTNFKD--PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305
Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
L N I I+DNAF L +L + LS+N + I + +F L L L LS N + + +
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 405 AFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGEN 443
+F LKEL L +N + +P L L+ + L N
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 195 bits (498), Expect = 4e-54
Identities = 101/533 (18%), Positives = 175/533 (32%), Gaps = 117/533 (21%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELP-FLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
+ + + ++P LP + +DL N I+++ SF LQ L L++
Sbjct: 9 SVIG-YNAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ 63
Query: 467 NNIG-NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
G + + L SL +L L N+ Q+E G F
Sbjct: 64 QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG---------------------- 101
Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
LA L L L++ NL + GN+ L +
Sbjct: 102 -LANLEVLTLTQC------------NLDGAVLSGNFFKPLTS------------------ 130
Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
+E+L + +N IK ++P +FF +
Sbjct: 131 -------------LEMLVLRDNNIKKIQPASFFLN-----------------MRRF---- 156
Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGS 705
L L N C D L + ++ L ++ +
Sbjct: 157 ----HVL---DLTFNKVKSICEEDLLNFQGKHF---------TLLRLSSITLQDMNEYWL 200
Query: 706 THLPASEAAPSQYLCPYDIHCFAL-CHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCS 764
+ + D+ + T ++ + N ++ +
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 765 EQQIS--TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
+ T L + + VF ++ L + ++I I + F
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
GL+ L L+L N + F+NL+KL L L N I + + +F L +L+ L LD
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 883 NRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
N+LKS FD T+ L+K++L NP+ CSC + L W+ NS K +
Sbjct: 381 NQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 431
Score = 172 bits (437), Expect = 4e-46
Identities = 87/420 (20%), Positives = 157/420 (37%), Gaps = 76/420 (18%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRNNSI 350
+DLS N ++ ++ET+F L L L + I TF+ L L L L N
Sbjct: 34 YVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 351 GYIEDNAFLSLYNLHTIYLSENRIH--HITAHLFNGLYVLSKLTLSNNLLVNIDSK-AFK 407
+E AF L NL + L++ + ++ + F L L L L +N + I F
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 408 NCSALKELDLSSNAIVEIPS-----------ALSELPFLKTLDLGENQISKIENGSFKNL 456
N LDL+ N + I L L + D+ E + + G+
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVL-------------NLSKNKIHQIEIGTFE- 502
+T L L N + ++ + + + + TF+
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 503 -KNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVW-----FDYAMVPGNLKWL 555
+ + L + + + VF++ L L L++N + F +L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL---THLLKL 328
Query: 556 DIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSV 612
++ N++ S+++ + + L ++ LD S+N I + + S +++ L ++ N +KSV
Sbjct: 329 NLSQNFLGSIDSR--MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 613 KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSM-DWL 671
P FD L +L + +L NP+DC C D+L
Sbjct: 387 -PDGIFD--RL--------------------------TSLQKIWLHTNPWDCSCPRIDYL 417
Score = 126 bits (319), Expect = 7e-31
Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CS C + + VP +P +V L N+ + F +++
Sbjct: 4 GTSECSV------IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDL 56
Query: 804 LSLYVNNSQIEVIL-NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
L V +++ N TF GLSSL +L L+ N F+ L L L L + ++
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Query: 863 --YIANGTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKVYLGNNPFSCSCA 914
++ F L SL++L L N +K + F + L N C
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR--FHVLDLTFNKVKSICE 171
Score = 107 bits (270), Expect = 1e-24
Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 31/267 (11%)
Query: 18 NRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELK 77
N++ C L G + T L D + S+ L
Sbjct: 164 NKVKSICE-EDLLNFQGKHF----TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218
Query: 78 ISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL------DLVPGSLDGLR--ELQ 129
+S E F ++ + ++ D + GL ++
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278
Query: 130 VLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
++S S I ++ VF +++ L L++N I ID F G
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-----------------G 321
Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
L L+LS N L ++ +L+ L L N I + +F+ L +L+ L + +
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSL 276
N L S+P+G+F + +I+ N
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPW 407
Score = 85.6 bits (212), Expect = 2e-17
Identities = 44/251 (17%), Positives = 80/251 (31%), Gaps = 56/251 (22%)
Query: 16 SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEE 75
S N + + G+ + + + T D T ++
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 76 LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
+S K+ L VFS +L++LT+ + + + GL L LN+S
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-------KIDDNAFWGLTHLLKLNLSQ 332
Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRI 195
+ + SI +F +L ++ L+LS N IR + F
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF------------------------- 367
Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
L+ L L+ N++ + F L+SL+ + + +N
Sbjct: 368 -----------------LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-- 408
Query: 256 PEGLFSSCRDI 266
SC I
Sbjct: 409 -----CSCPRI 414
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 238 bits (608), Expect = 8e-67
Identities = 80/481 (16%), Positives = 165/481 (34%), Gaps = 57/481 (11%)
Query: 57 LLDSSITT--KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKK 114
L ++IT K+ + L + + N V + N + ++
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA------------QQ 237
Query: 115 LDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRR 174
D L++L + + + + +L +Q +N++ N + L
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL------ 291
Query: 175 ASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234
+ + + G ++I+ + +N L+T + + K ++L L N++
Sbjct: 292 ---KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP 347
Query: 235 AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH-KLEQLLVL 293
AF + L LN++ N + +P + + N L + + + +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407
Query: 294 DLSSNHLSSNHIDETTFI-----GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
D S N + S + I + +NLSNN++++ + F L ++L N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI-DSKAFK 407
+ I N+ F Y+L+ + L N L + D
Sbjct: 468 MLTEIPKNSLKDENE-----------------NFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGE------NQISKIENGSFKNLQQLTD 461
L +DLS N+ + P+ LK + N+ + LT
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
L++ N+I ++ + P++ VL++ N I++ L + DI
Sbjct: 571 LQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
Query: 522 G 522
G
Sbjct: 628 G 628
Score = 207 bits (530), Expect = 9e-57
Identities = 90/580 (15%), Positives = 180/580 (31%), Gaps = 105/580 (18%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI------------------NTRNL 107
S + + L + D L L+ L + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 108 QWDKSKKLDLVPGSLDGLRELQVLNI------SSSNIKSISDDVFCSLANIQTLNLSRNS 161
+ + ++ +D ++ S KSI +L + Q + N+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ-IGQLSNN 194
Query: 162 IRDI-DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSG--------- 211
I + + + LR + ++
Sbjct: 195 ITFVSKAVM----------------RLT---KLRQFYMGNSPFVAENICEAWENENSEYA 235
Query: 212 ---------ITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPE----- 257
+ L ++ + N P AL ++++N++ N +S +
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 258 ---GLFSSCRDISEIYAQKNSLVELSR-GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL 313
I IY N+L K+++L +L+ N L + F
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA--FGSE 352
Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL-SLYNLHTIYLSEN 372
I+L LNL+ N++T I A ++ L +N + YI + S+ + I S N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412
Query: 373 RIHHITAHLFNGLYV-------LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
I + F+ L +S + LSNN + + F S L ++L N + EI
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472
Query: 426 P--------SALSELPFLKTLDLGENQISKI-ENGSFKNLQQLTDLRLVDNN-------I 469
P L ++DL N+++K+ ++ L L + L N+
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQ 529
N S+ L + N+ + L +++ SN + +N
Sbjct: 533 LNSST--LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPN 588
Query: 530 LLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNN 567
+ L++ +N + D + V + + +
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Score = 193 bits (493), Expect = 7e-52
Identities = 78/568 (13%), Positives = 182/568 (32%), Gaps = 86/568 (15%)
Query: 109 WDKSKKLDL---VPG-SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRD 164
W+ +K+LD+ PG SL+ + L++ D L ++ L L + +
Sbjct: 60 WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119
Query: 165 IDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG-DYSGITKFRRLQNLHL 223
+ L S M + DY F L +
Sbjct: 120 NERLFGP-------------KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166
Query: 224 ENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGL 283
++ + + + SN++ + + +
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM----------------------- 203
Query: 284 FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRL 343
+L +L + ++ + N + + + + +L L +
Sbjct: 204 --RLTKLRQFYMGNSPFVA-------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254
Query: 344 DLRNNS-IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG--------LYVLSKLTLS 394
++ N + + +L + I ++ NR + + + +
Sbjct: 255 EVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 395 NNLLVNID-SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
N L + + L L+ N + A L +L+L NQI++I
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFC 373
Query: 454 KNLQQLTDLRLVDNNIGNLSSGM-LYELPSLEVLNLSKNKIHQIEIGTFE-------KNK 505
+Q+ +L N + + + + + ++ S N+I ++ F+ K
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 506 RLAAIRLDSNFLTD-INGVFTYLAQLLWLNLSENHLVWFDYAMVPG---------NLKWL 555
+++I L +N ++ +F+ + L +NL N L + L +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493
Query: 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKSVK- 613
D+ N ++ L++ + + +D S+N + ++ ++++ I N
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553
Query: 614 -----PHTFFDKSNLARVDIYANDITKL 636
P +L ++ I +NDI K+
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKV 581
Score = 167 bits (426), Expect = 2e-43
Identities = 66/418 (15%), Positives = 140/418 (33%), Gaps = 72/418 (17%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL------- 117
+ + ++ + ++ + + + + L +Q + +
Sbjct: 267 TFLKALPEMQLINVACNRGISGE-QLKDDWQALADAP-VGEKIQ-----IIYIGYNNLKT 319
Query: 118 --VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRA 175
V SL +++L +L + ++ F S + +LNL+ N I +I A
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP--------A 370
Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
+ + + L +HNKL+ + + + + NEI +
Sbjct: 371 NFCGFTE---------QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 236 FV-------ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGL----- 283
F ++ +N+S+N + P+ LFS+ +S I N L E+ +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Query: 284 --FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
F L +DL N L+ D+ L L+ ++LS N ++ + L+
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLK 539
Query: 342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401
+RN NR L++L + +N + +
Sbjct: 540 GFGIRNQ------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581
Query: 402 DSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
+ K N + LD+ N + I S + L ++ I ++++
Sbjct: 582 NEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 135 bits (343), Expect = 6e-33
Identities = 55/417 (13%), Positives = 115/417 (27%), Gaps = 130/417 (31%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
+F + L L ++ ++ E+P +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQ----------------------------- 378
Query: 126 RELQVLNISSSNIKSISDDVF-CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
++ L+ + + +K I + S++ + ++ S N I +D F
Sbjct: 379 --VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD------------- 423
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
K + +++L NN+IS+ F S L
Sbjct: 424 ----------------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461
Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
+N+ N L +P+ F L +DL N L+
Sbjct: 462 INLMGNMLTEIPKNSLKD-----------------ENENFKNTYLLTSIDLRFNKLTKL- 503
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
D+ L L+ ++LS N ++ + L+ +RN
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQ---------------- 546
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
N + + C +L +L + SN I +
Sbjct: 547 --------------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
+ + P + LD+ +N I+ + L + ++ ++
Sbjct: 581 VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 67.4 bits (165), Expect = 2e-11
Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 11/141 (7%)
Query: 780 THVYLDGNTFKTIPNHVFIGR--------KNMLSLYVNNSQIEVI-LNQTFNGLSSLQVL 830
+ + N + + + + +Y+ + ++ + + + L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 831 HLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF-R 889
N + F + KL+ L L N+I I ++ L N+LK
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394
Query: 890 AFDLNTNSMLRKVYLGNNPFS 910
FD + S++ + N
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIG 415
Score = 67.0 bits (164), Expect = 2e-11
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 23/163 (14%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG-LSSLQVLHLENNLIT 838
+ L N IP + + + +L +++++ I N +S + + N I
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 839 HFYGYEFD-------NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAF 891
G FD +S + L N+I F+ L + L GN L
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 892 DLNTN-------SMLRKVYLGNNPFS--------CSCATLQEL 919
L +L + L N + + L +
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518
Score = 50.4 bits (121), Expect = 3e-06
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 11/135 (8%)
Query: 780 THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
T + L N + + ++ + ++ + Q N S+L+ + N
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDA 549
Query: 839 ---HFYGY---EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFD 892
L++L + N I + ++ VL + N S
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSY 606
Query: 893 LNTNSMLRKVYLGNN 907
+ L +
Sbjct: 607 VCPYIEAGMYMLFYD 621
Score = 43.5 bits (103), Expect = 4e-04
Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 28/187 (14%)
Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
+ D+ + + + P D ++ + + +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189
Query: 808 VNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY-------------------EFDNL 848
++ I + L+ L+ ++ N+ ++DNL
Sbjct: 190 QLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAF--------DLNTNSMLR 900
+ L+++ + AL +Q++ + NR S D ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 901 KVYLGNN 907
+Y+G N
Sbjct: 309 IIYIGYN 315
Score = 35.8 bits (83), Expect = 0.12
Identities = 9/127 (7%), Positives = 28/127 (22%), Gaps = 12/127 (9%)
Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY----EFDNLEKLSELYLQENR 860
L + + L+ L+VL L ++ +
Sbjct: 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144
Query: 861 IEY--IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS------CS 912
+ + L ++ + + ++ +N +
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204
Query: 913 CATLQEL 919
L++
Sbjct: 205 LTKLRQF 211
Score = 33.9 bits (78), Expect = 0.48
Identities = 5/49 (10%), Positives = 15/49 (30%)
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL 872
++ VL +++N + L ++ + I +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 231 bits (591), Expect = 4e-66
Identities = 67/480 (13%), Positives = 157/480 (32%), Gaps = 72/480 (15%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
QN + K+++ L + + N+K L ++ L + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------QISAADLAPFT 58
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
+L++LN+SS+ + D SL+ ++TL+L+ N ++++
Sbjct: 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS---------------- 100
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
+ L ++N + + ++ + +N++L NN+I+ + S ++ L+
Sbjct: 101 ------IETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
+ N + ++ + L L+L N + +
Sbjct: 151 LKLNEIDTVNFAEL-----------------------AASSDTLEHLNLQYNFIYD--VK 185
Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
+L L+LS+N+L + F+ + + LRNN + IE A NL
Sbjct: 186 GQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
L N H T F T++ + + + + C+ + ++P
Sbjct: 242 FDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 427 SALSE------LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
+ ++ L ++ ++E N + ++ + + +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRK 359
Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
+ L K + + + L + ++ + L L
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419
Score = 207 bits (528), Expect = 7e-58
Identities = 77/523 (14%), Positives = 169/523 (32%), Gaps = 77/523 (14%)
Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203
++ + + ++ +S++ +++ LDLS N L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLR-----------------QSAWNVKELDLSGNPL 46
Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSC 263
+ + F +L+ L+L +N + + +LS+LR L++++N++ L
Sbjct: 47 SQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------ 97
Query: 264 RDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSN 323
+ L ++N++S + + G + L+N
Sbjct: 98 -----------------------GPSIETLHAANNNISR--VSCSRGQGKKN---IYLAN 129
Query: 324 NELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LYNLHTIYLSENRIHHITAHLF 382
N++T + +Q LDL+ N I + + L + L N I+ + +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGE 442
L L LS+N L + F++ + + + L +N +V I AL L+ DL
Sbjct: 190 --FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
Query: 443 NQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
N F Q++ + + L+ E + + +
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304
Query: 502 E-----KNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG--NLKW 554
+ K K A + + + A+ ++ + +
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364
Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP----NSVEVL-FINNNLI 609
L+ + + LD + + + EL + +++L I
Sbjct: 365 LEQKKKALDEQ----VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420
Query: 610 KSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
+ + + D+Y + T+L RLK + L
Sbjct: 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463
Score = 201 bits (512), Expect = 1e-55
Identities = 69/439 (15%), Positives = 146/439 (33%), Gaps = 47/439 (10%)
Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
+ +I ++ + L L S ++ E+ N L ++S +L +L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 296 SSN-----------------HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
SSN L++N++ + + L+ +NN ++R+ +
Sbjct: 66 SSNVLYETLDLESLSTLRTLDLNNNYV--QELLVGPSIETLHAANNNISRVSCSRGQ--- 120
Query: 339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT-AHLFNGLYVLSKLTLSNNL 397
+ + L NN I + D + + L N I + A L L L L N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
+ ++ + + LK LDLSSN + + + + L N++ IE + + Q
Sbjct: 181 IYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQ 237
Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
L L N + + + + V ++K + ++ E+ +
Sbjct: 238 NLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
Query: 518 TDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSI 577
D+ + +L+ L E+ L L G+ L E ++
Sbjct: 297 EDLPA--PFADRLIALKRKEHAL--------------LSGQGSETERLEC--ERENQARQ 338
Query: 578 KNLDASHNRILEISE--LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
+ +DA + + + + L + + + L A +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398
Query: 636 LDLTALRLKPVPQNKTLPE 654
L P+ + + +
Sbjct: 399 LQHATEEQSPLQLLRAIVK 417
Score = 188 bits (479), Expect = 2e-51
Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 14/354 (3%)
Query: 310 FIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
R I ++++ L + A + ++ LDL N + I L + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
S N ++ L L L L+NN + + +++ L ++N I + +
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR 118
Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE-LPSLEVLNL 488
K + L N+I+ + + ++ L L N I ++ L +LE LNL
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 489 SKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMV 548
N I+ ++ +L + L SN L + F A + W++L N LV + A+
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234
Query: 549 P-GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
NL+ D+ GN ++ + + L +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Query: 608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
+ + L R + + L + Q + E
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-QREIDALKEQ 347
Score = 167 bits (424), Expect = 3e-44
Identities = 70/480 (14%), Positives = 139/480 (28%), Gaps = 67/480 (13%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S I+ LE L +S+ L E L L+ L +N +Q
Sbjct: 47 SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ----------- 93
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
L ++ L+ +++NI +S + + L+ N I + L R
Sbjct: 94 -ELLVGPSIETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSR---- 145
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
++ LDL N++ T+ L++L+L+ N I +
Sbjct: 146 -------------VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--F 190
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
+ L+ L++SSN L + F S ++ I + N LV + + + L DL N
Sbjct: 191 AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNG 248
Query: 300 LSS---------------------NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
+ + + + A L+
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 339 FLQR-----LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
L+R L + + +E + I + + + + L
Sbjct: 309 ALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367
Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS-KIENGS 452
L S + + L + +E+ A E L+ L +
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427
Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
+ D + + L+ +L+ + ++ A +L
Sbjct: 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS-ANATLQELVVREQNLASQL 486
Score = 161 bits (410), Expect = 2e-42
Identities = 79/590 (13%), Positives = 173/590 (29%), Gaps = 122/590 (20%)
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
++ + + ++S+ + S +N+ + LS N + I+A L L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
S+N+L ++ S L+ LDL++N + E+ P ++TL N IS++
Sbjct: 66 SSNVLYET--LDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG 119
Query: 454 KNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
+ + + L +N I L ++ L+L N+I +
Sbjct: 120 QGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------------ 164
Query: 514 SNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKD 573
L LNL N + +V LK LD+ N ++ +
Sbjct: 165 ----------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-------- 206
Query: 574 GLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI 633
F + + + + N +
Sbjct: 207 ----------------------------------------GPEFQSAAGVTWISLRNNKL 226
Query: 634 TKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLD 693
++ K + ++ L F L GN F C D+ + + + K+ +
Sbjct: 227 VLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQN 279
Query: 694 NVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHD 753
C + CCE ++ P
Sbjct: 280 EEECTVPTLGHYGAY-----------------------CCE------DLPAPFADRLIAL 310
Query: 754 QNWNTNVVDCSEQQISTVPPRIPMDA--THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNS 811
+ ++ + + A + ++T+ + V + ++ ++L
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370
Query: 812 QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGT-FN 870
++ ++ + L + + L L R E +
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHA-TEEQSPLQLLRAIVKRYEEMYVEQQSV 429
Query: 871 ALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
+++ + ++ + + + L + + ATLQEL
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA---LASANATLQELV 476
Score = 71.0 bits (174), Expect = 1e-12
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
+++ + ++ + ++ + + + EL L N + I+ L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+L L N L + + LR + L NN
Sbjct: 62 LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQ 93
Score = 70.6 bits (173), Expect = 1e-12
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
V +S ++ L +++ L L N ++ + KL L L N +
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC-SCATLQELQT 921
+ +L +L+ L L+ N ++ L + ++ NN S SC+ Q +
Sbjct: 75 D--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKKN 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 220 bits (563), Expect = 2e-62
Identities = 108/510 (21%), Positives = 179/510 (35%), Gaps = 77/510 (15%)
Query: 128 LQVLNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
L I+ I I D +LA L + ++ D +
Sbjct: 3 LGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQTDLD-------------- 46
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
+ L ++++ G+ L ++ NN+++ I P L+ L +
Sbjct: 47 -----QVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 96
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
+++N + + L L L L +N ++ D
Sbjct: 97 MNNNQIADITP--------------------------LANLTNLTGLTLFNNQIT----D 126
Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
L L L LS+N ++ I A L LQ+L N +L L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---PLANLTTLER 181
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
+ +S N++ I+ L L L +NN + +I + L EL L+ N + +I
Sbjct: 182 LDISSNKVSDISV--LAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG 237
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
+ L+ L L LDL NQIS + L +LT+L+L N I N+S L L +L L
Sbjct: 238 T-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
L++N++ I K L + L N ++DI+ + L +L L N +
Sbjct: 293 ELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSL 349
Query: 547 MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
N+ WL N IS L + + I L + N + N
Sbjct: 350 ANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406
Query: 607 NLIKSVKPHTFFDKSNLARVDIYANDITKL 636
+ P T D + DI N +
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYT 436
Score = 215 bits (551), Expect = 5e-61
Identities = 98/430 (22%), Positives = 188/430 (43%), Gaps = 32/430 (7%)
Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
++ I+QI + AL+ + ++ + ++ + A + + +
Sbjct: 6 ATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI 61
Query: 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF 339
L L ++ S+N L+ D T L +L+ + ++NN++ I +L
Sbjct: 62 DG--VEYLNNLTQINFSNNQLT----DITPLKNLTKLVDILMNNNQIADITP--LANLTN 113
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L L L NN I I+ +L NL+ + LS N I I+A +GL L +L+ N +
Sbjct: 114 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV-- 167
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
D K N + L+ LD+SSN + +I L++L L++L NQIS I L L
Sbjct: 168 -TDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNL 223
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
+L L N + ++ + L L +L L+L+ N+I + +L ++L +N +++
Sbjct: 224 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN 279
Query: 520 INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKN 579
I+ L L L L+EN L NL +L ++ N IS ++ + ++
Sbjct: 280 ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT---KLQR 335
Query: 580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLT 639
L +N++ ++S L+ ++ L +N I + P + + + ++ + T +
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393
Query: 640 ALRLKPVPQN 649
+P
Sbjct: 394 YKANVSIPNT 403
Score = 213 bits (544), Expect = 4e-60
Identities = 110/495 (22%), Positives = 187/495 (37%), Gaps = 94/495 (18%)
Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
+ L E + +N+ L + TL R I+ ID + +
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLN-------- 68
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
+L ++ S+N+L + + + +L ++ + NN+I+ I P L+
Sbjct: 69 -----------NLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLT 112
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
+L L + +N + + L L L+LSSN +
Sbjct: 113 NLTGLTLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTI 146
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
S D + GL L L+ N D K +L L+RLD+ +N + I
Sbjct: 147 S----DISALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSDIS--VLAK 197
Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
L NL ++ + N+I IT L L +L+L+ N L +I + + + L +LDL++N
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN 253
Query: 421 AIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
I + LS L L L LG NQIS I L LT+L L +N + ++S + L
Sbjct: 254 QISNLA-PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308
Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
+L L L N I I +L + +N ++D++ L + WL+ N +
Sbjct: 309 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQI 365
Query: 541 VWFDYAMVPGNLKWLDIHGNYISSLNNYY---------------------EIKDGLSIKN 579
+ L ++ ++ Y I DG S
Sbjct: 366 SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425
Query: 580 LDASHNRILEISELS 594
D + N +E+S
Sbjct: 426 PDITWNLPSYTNEVS 440
Score = 188 bits (479), Expect = 2e-51
Identities = 95/465 (20%), Positives = 180/465 (38%), Gaps = 44/465 (9%)
Query: 57 LLDSSIT-TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL 115
L +++T T S ++ + L+ + + L NL ++ + L
Sbjct: 31 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLT------- 81
Query: 116 DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF--AVR 173
D+ P L L +L + ++++ I I+ +L N+ L L N I DID L +
Sbjct: 82 DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137
Query: 174 RASAESNSGEKIECSGGMD-LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA 232
R SN+ I G+ L+ L + D + L+ L + +N++S I+
Sbjct: 138 RLELSSNTISDISALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKVSDIS 193
Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
L++L L ++N + + ++ E+ N L ++ L L
Sbjct: 194 V--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTD 247
Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
LDL++N +S + GL +L L L N+++ I L L L+L N +
Sbjct: 248 LDLANNQIS----NLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301
Query: 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
I +L NL + L N I I+ + L L +L NN + ++ S N + +
Sbjct: 302 IS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNI 355
Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
L N I ++ L+ L + L L + + N+ V N G L
Sbjct: 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSI---PNTVKNVTGAL 411
Query: 473 SS-GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
+ + + S +++ N ++ ++ + + + F
Sbjct: 412 IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456
Score = 151 bits (383), Expect = 6e-39
Identities = 72/384 (18%), Positives = 151/384 (39%), Gaps = 36/384 (9%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
N+ +L L + N ++ ++ L NL RL +++ + +L GL
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---------DISALSGL 155
Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF--AVRRASAESNSGE 183
LQ L+ + + + +L ++ L++S N + DI L + A +N
Sbjct: 156 TSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 212
Query: 184 KIECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
I G + +L L L+ N+L+ + + L +L L NN+IS +AP L+ L
Sbjct: 213 DITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267
Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
L + +N + ++ + ++ + +N L ++S L+ L L L N++S
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNIS- 322
Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362
D + L +L L NN+++ + + +L + L +N I + +L
Sbjct: 323 ---DISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT--PLANLT 375
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
+ + L++ + + + + + + L+ + + + E D++ N
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLP 433
Query: 423 VEIPSALSELPFLKTLDLGENQIS 446
T+ G S
Sbjct: 434 SYTNEVSYTFSQPVTIGKGTTTFS 457
Score = 70.0 bits (172), Expect = 2e-12
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T + L N + G + L + +QI I GL++L L L N +
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
NL+ L+ L L N I I+ ++L LQ L N++ + TN +
Sbjct: 302 IS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN--I 355
Query: 900 RKVYLGNNPFS 910
+ G+N S
Sbjct: 356 NWLSAGHNQIS 366
Score = 66.9 bits (164), Expect = 2e-11
Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
QI+ + P + + L NT I G ++ L N ++
Sbjct: 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---P 172
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L++L+ L + +N ++ L L L N+I I L +L L L
Sbjct: 173 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+GN+LK TN L + L NN S
Sbjct: 229 NGNQLKDIGTLASLTN--LTDLDLANNQIS 256
Score = 65.8 bits (161), Expect = 4e-11
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIE 814
+ ++ + +D T + D K+I + N+ + +N+Q+
Sbjct: 25 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLT 81
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALIS 874
I L+ L + + NN I NL L+ L L N+I I L +
Sbjct: 82 DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTN 135
Query: 875 LQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
L L+L N + A T+ L+++ GN
Sbjct: 136 LNRLELSSNTISDISALSGLTS--LQQLSFGNQ 166
Score = 48.8 bits (117), Expect = 1e-05
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
+ ++ I I T L+ L +T +L++++ L I+ I
Sbjct: 6 ATITQDTPINQI--FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI 61
Query: 865 ANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS-----CSCATLQEL 919
L +L + N+L T L + + NN + + L L
Sbjct: 62 DG--VEYLNNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADITPLANLTNLTGL 117
Score = 39.2 bits (92), Expect = 0.008
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)
Query: 759 NVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL 817
+ IS + P + ++ N + + N+ L ++QI +
Sbjct: 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT 369
Query: 818 NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
L+ + L L + T+ N+ + + IA T + S
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG--ALIAPATISDGGSYTE 425
Query: 878 LQLDGNRLKS 887
+ N
Sbjct: 426 PDITWNLPSY 435
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 212 bits (541), Expect = 5e-61
Identities = 91/391 (23%), Positives = 160/391 (40%), Gaps = 46/391 (11%)
Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIEC 187
L + I I D LA L + S+ D+ T
Sbjct: 2 AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQEELES-------------- 45
Query: 188 SGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
+ L ++ K+ ++ GI L+ L+L N+I+ I+P L L L I
Sbjct: 46 -----ITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYI 95
Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
+N + + + ++ E+Y ++++ ++S L ++ L+L +NH S+
Sbjct: 96 GTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL--- 148
Query: 308 TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTI 367
+ + L L ++ +++ + +L L L L N I I SL +LH
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYF 204
Query: 368 YLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS 427
N+I IT + L+ L + NN + ++ N S L L++ +N I +I
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDIN- 259
Query: 428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLN 487
A+ +L LK L++G NQIS I NL QL L L +N +GN ++ L +L L
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317
Query: 488 LSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
LS+N I I ++ + + +
Sbjct: 318 LSQNHITDIR--PLASLSKMDSADFANQVIK 346
Score = 190 bits (485), Expect = 2e-53
Identities = 79/352 (22%), Positives = 149/352 (42%), Gaps = 26/352 (7%)
Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL 345
L + + L ++ D T L + L ++ ++ I + L L+ L+L
Sbjct: 20 DLAEGIRAVLQKASVT----DVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNL 73
Query: 346 RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKA 405
N I I +L L +Y+ N+I I+A L L +L L+ + + +I
Sbjct: 74 NGNQITDIS--PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS--P 127
Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
N + + L+L +N + S LS + L L + E+++ + NL L L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185
Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
N I ++S L L SL N+I I RL ++++ +N +TD++
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP-LA 240
Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
L+QL WL + N + + LK L++ N IS ++ + + + +L ++N
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNN 297
Query: 586 RI--LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
++ ++ + ++ LF++ N I ++P S + D I K
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 174 bits (443), Expect = 6e-48
Identities = 87/392 (22%), Positives = 149/392 (38%), Gaps = 74/392 (18%)
Query: 57 LLDSSITT-KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL 115
L +S+T + + + S+ +L ++ K+ + L NL+ L +N +
Sbjct: 29 LQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQIT------- 79
Query: 116 DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRA 175
D+ P L L +L L I ++ I IS +L N++ L L+ ++I DI L +
Sbjct: 80 DISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISPLANLTK-- 133
Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
+ L+L N L D S ++ L L + +++ + P
Sbjct: 134 -----------------MYSLNLGANHN--LSDLSPLSNMTGLNYLTVTESKVKDVTP-- 172
Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
L+ L L+++ N + + L L
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--------------------------LASLTSLHYFTA 206
Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED 355
N ++ D T + RL L + NN++T + +L L L++ N I I
Sbjct: 207 YVNQIT----DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN- 259
Query: 356 NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415
A L L + + N+I I+ N L L+ L L+NN L N D + + L L
Sbjct: 260 -AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316
Query: 416 DLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
LS N I +I L+ L + + D I K
Sbjct: 317 FLSQNHITDIR-PLASLSKMDSADFANQVIKK 347
Score = 168 bits (428), Expect = 5e-46
Identities = 72/369 (19%), Positives = 146/369 (39%), Gaps = 50/369 (13%)
Query: 295 LSSNHLSSNHIDETTFI-GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI 353
++ I++ L I L +T + T ++L + +L + + I
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASI 59
Query: 354 EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
+ +L+ NL + L+ N+I I+ + L L+ L + N + +I A +N + L+
Sbjct: 60 QGIEYLT--NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLR 113
Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQ-ISKIENGSFKNLQQLTDLRLVDNNIGNL 472
EL L+ + I +I L+ L + +L+LG N +S + N+ L L + ++ + ++
Sbjct: 114 ELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV 170
Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLW 532
+ + L L L+L+ N+I I L N +TDI +A +
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP----VANMT- 221
Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
L L I N I+ L+ + + + L+ N+I +I+
Sbjct: 222 ------------------RLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINA 260
Query: 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
+ +++L + +N I + + S L + + N + D+ + L
Sbjct: 261 VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIG-----GLTNL 313
Query: 653 PEFYLGGNP 661
+L N
Sbjct: 314 TTLFLSQNH 322
Score = 69.1 bits (170), Expect = 2e-12
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 8/131 (6%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
+ + N + + L + +QI I L+ L++L++ +N I+
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
+NL +L+ L+L N++ L +L L L N + R + +
Sbjct: 280 IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK--M 335
Query: 900 RKVYLGNNPFS 910
N
Sbjct: 336 DSADFANQVIK 346
Score = 66.4 bits (163), Expect = 1e-11
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
++ + + K + ++ SL +N +QIE I L+SL N IT
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
N+ +L+ L + N+I ++ L L L++ N++ A T L
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTK--L 267
Query: 900 RKVYLGNNPFSC--SCATLQELQT-WIIDN 926
+ + +G+N S L +L + ++ +N
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNN 297
Score = 59.9 bits (146), Expect = 2e-09
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 9/128 (7%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T + + G +I N+ L +N +QI I + L L L++ N IT
Sbjct: 47 TKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITD 102
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
NL L ELYL E+ I I+ L + L L N S + L+ + L
Sbjct: 103 IS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGL 157
Query: 900 RKVYLGNN 907
+ + +
Sbjct: 158 NYLTVTES 165
Score = 43.3 bits (103), Expect = 4e-04
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
G ++L L N I +L + LQ+ + + T L S+ L + G
Sbjct: 1 GAATLATLPAPINQIF-----PDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53
Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
++ S + + TN L + L N +
Sbjct: 54 EKVASIQGIEYLTN--LEYLNLNGNQIT 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 213 bits (543), Expect = 3e-60
Identities = 78/261 (29%), Positives = 117/261 (44%), Gaps = 9/261 (3%)
Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
P+ + + +L +P+G+ + + + +N + + F L L +
Sbjct: 36 PSVCSCSNQFSKVICVRKNLREVPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
L LS NH+ + I+ F GL L L L +N LT I F L L+ L LRNN I
Sbjct: 93 LQLSRNHIRT--IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150
Query: 353 IEDNAFLSLYNLHTIYLSE-NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
I AF + +L + L E R+ +I+ F GL L L L+ L I
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIK 208
Query: 412 LKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
L ELDLS N + I + L L+ L + ++QI IE +F NLQ L ++ L NN+
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 471 NLSSGMLYELPSLEVLNLSKN 491
L + L LE ++L N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289
Score = 200 bits (511), Expect = 6e-56
Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 10/259 (3%)
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
CS + LR + GI + L+L N+I I N+F L L IL
Sbjct: 39 CSCSNQFSKVICVRKNLREVP--DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
+S NH+ ++ G F+ +++ + N L + G F L +L L L +N + S I
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IP 152
Query: 307 ETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
F + L L+L L+ I F+ L L+ L+L ++ I L L
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLD 210
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
+ LS N + I F GL L KL + + + I+ AF N +L E++L+ N + +
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 426 P-SALSELPFLKTLDLGEN 443
P + L L+ + L N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289
Score = 198 bits (504), Expect = 4e-55
Identities = 77/266 (28%), Positives = 119/266 (44%), Gaps = 20/266 (7%)
Query: 289 QLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
Q + +L + I T +LNL N++ I +FK L L+ L L
Sbjct: 44 QFSKVICVRKNLREVPDGISTNT-------RLLNLHENQIQIIKVNSFKHLRHLEILQLS 96
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
N I IE AF L NL+T+ L +NR+ I F L L +L L NN + +I S AF
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156
Query: 407 KNCSALKELDLSS-NAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
+L+ LDL + I A L L+ L+L + +I + L +L +L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDL 214
Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGV 523
N++ + G L L+ L + +++I IE F+ + L I L N LT + + +
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274
Query: 524 FTYLAQLLWLNLSEN------HLVWF 543
FT L L ++L N ++W
Sbjct: 275 FTPLHHLERIHLHHNPWNCNCDILWL 300
Score = 166 bits (421), Expect = 3e-44
Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 57/298 (19%)
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
L E+P + + R L NL ++ + + S LR L++L +S ++I
Sbjct: 51 VRKNLREVPDGISTNTRLL--------NLHENQIQIIK--VNSFKHLRHLEILQLSRNHI 100
Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
++I F LAN+ TL L N + I F L+ L L
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAF-----------------VYLSKLKELWL 143
Query: 199 SHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSSLRILNISSNHLVSLPE 257
+N + ++ Y+ + L+ L L E +S I+ AF LS+LR LN++ +L +P
Sbjct: 144 RNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 258 GLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
L +L LDLS NHLS+ I +F GL+ L
Sbjct: 203 --------------------------LTPLIKLDELDLSGNHLSA--IRPGSFQGLMHLQ 234
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
L + +++ I+ F +L L ++L +N++ + + F L++L I+L N +
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 154 bits (390), Expect = 4e-40
Identities = 63/286 (22%), Positives = 121/286 (42%), Gaps = 47/286 (16%)
Query: 409 CSA-LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
CS ++ + E+P +S + L+L ENQI I+ SFK+L+ L L+L N
Sbjct: 41 CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
+I + G L +L L L N++ I G F +L + L +N + I + F
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHN 585
+ L L+L E +S ++ +GL +++ L+ +
Sbjct: 159 IPSLRRLDLGEL---------------------KRLSYISE--GAFEGLSNLRYLNLAMC 195
Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT----------- 634
+ EI L+ ++ L ++ N + +++P +F +L ++ + + I
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255
Query: 635 ---KLDLTALRLKPVPQN-----KTLPEFYLGGNPFDCDCSMDWLP 672
+++L L +P + L +L NP++C+C + WL
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301
Score = 151 bits (382), Expect = 4e-39
Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 49/285 (17%)
Query: 21 SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEE 75
V C NL VP I + +L L I SF+++ LE
Sbjct: 47 KVICV--------RKNLREVPD------GISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 76 LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
L++S + + + F+GL NL L + L + G+ L +L+ L + +
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-------TIPNGAFVYLSKLKELWLRN 145
Query: 136 SNIKSISDDVFCSLANIQTLNLSR-NSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-L 193
+ I+SI F + +++ L+L + I F G+ L
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE------------------GLSNL 187
Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
R L+L+ LR + + + + +L L L N +S I P +F L L+ L + + +
Sbjct: 188 RYLNLAMCNLREIPNLTPLI---KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
+ F + + + EI N+L L LF L L + L N
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 141 bits (357), Expect = 8e-36
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 28/219 (12%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+I +F + +L L++ + +L +P F L LK L + ++ +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPS 153
Query: 120 GSLDGLRELQVLNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
+ + + L+ L++ + IS+ F L+N++ LNL+ ++R+I L ++
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK----- 208
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
L LDLS N L + S LQ L + ++I I NAF
Sbjct: 209 --------------LDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDN 253
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
L SL +N++ N+L LP LF+ + I+ N
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 112 bits (283), Expect = 2e-26
Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 17/203 (8%)
Query: 767 QISTVPPRIPMDATH-VYLD---GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
I ++P LD I F G N+ L + + I
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLT 204
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
L L L L N ++ F L L +L++ +++I+ I F+ L SL + L
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942
N L L +++L +NP++C+C + L WI D + C
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNC-DILWLSWWIKDMAPSNTA-CCARC---- 318
Query: 943 SSPPIRK-----EIDLNSTTCTE 960
++PP K E+D N TC
Sbjct: 319 NTPPNLKGRYIGELDQNYFTCYA 341
Score = 110 bits (278), Expect = 1e-25
Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 28/169 (16%)
Query: 740 CEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIG 799
TCP CSC + + V C + + VP I + + L N + I
Sbjct: 31 SAQTCPSVCSCSN----QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV----- 81
Query: 800 RKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN 859
+F L L++L L N I F+ L L+ L L +N
Sbjct: 82 -------------------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 860 RIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNP 908
R+ I NG F L L+ L L N ++S ++ N LR++ LG
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 202 bits (515), Expect = 2e-56
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 12/260 (4%)
Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
CS + + L + GI + L+L N I I + F L L +L
Sbjct: 51 SCSN--QFSKVVCTRRGLSEVP--QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104
Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
+ N + + G F+ ++ + N L + G F L +L L L +N + S I
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--I 162
Query: 306 DETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
F + L+ L+L +L I F+ L L+ L+L +I + L L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGL 220
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+ +S N I F+GL L KL + N+ + I+ AF ++L EL+L+ N +
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 425 IP-SALSELPFLKTLDLGEN 443
+P + L +L L L N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300
Score = 198 bits (504), Expect = 5e-55
Identities = 78/266 (29%), Positives = 117/266 (43%), Gaps = 20/266 (7%)
Query: 289 QLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
Q + + LS I T LNL N + I A TF+ L L+ L L
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSNT-------RYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
NSI IE AF L +L+T+ L +N + I + F L L +L L NN + +I S AF
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167
Query: 407 KNCSALKELDLSS-NAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
+L LDL + I A L LK L+LG I + + L L +L +
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEM 225
Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGV 523
N+ + G + L SL+ L + +++ IE F+ L + L N L+ + + +
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285
Query: 524 FTYLAQLLWLNLSEN------HLVWF 543
FT L L+ L+L N ++W
Sbjct: 286 FTPLRYLVELHLHHNPWNCDCDILWL 311
Score = 167 bits (424), Expect = 2e-44
Identities = 66/299 (22%), Positives = 116/299 (38%), Gaps = 59/299 (19%)
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
+ L E+P + S R L NL + + + + L L+VL + ++I
Sbjct: 62 TRRGLSEVPQGIPSNTRYL--------NLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSI 111
Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-LRILD 197
+ I F LA++ TL L N + I + F + LR L
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE------------------YLSKLRELW 153
Query: 198 LSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSSLRILNISSNHLVSLP 256
L +N + ++ Y+ + L L L E ++ I+ AF L +L+ LN+ ++ +P
Sbjct: 154 LRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 257 EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRL 316
L L L++S NH I +F GL L
Sbjct: 213 N--------------------------LTPLVGLEELEMSGNHFPE--IRPGSFHGLSSL 244
Query: 317 IILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
L + N++++ I+ F L L L+L +N++ + + F L L ++L N +
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 155 bits (394), Expect = 1e-40
Identities = 64/286 (22%), Positives = 120/286 (41%), Gaps = 47/286 (16%)
Query: 409 CSA-LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
CS ++ + + E+P + + L+L EN I I+ +F++L L L+L N
Sbjct: 52 CSNQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
+I + G L SL L L N + I G FE +L + L +N + I + F
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHN 585
+ L+ L+L E + ++ +GL ++K L+
Sbjct: 170 VPSLMRLDLGEL---------------------KKLEYISE--GAFEGLFNLKYLNLGMC 206
Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT----------- 634
I ++ L+ +E L ++ N ++P +F S+L ++ + + ++
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 635 ---KLDLTALRLKPVPQN-----KTLPEFYLGGNPFDCDCSMDWLP 672
+L+L L +P + + L E +L NP++CDC + WL
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLA 312
Score = 151 bits (384), Expect = 3e-39
Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 49/285 (17%)
Query: 21 SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEE 75
V C LS VP I + L L I +F++++ LE
Sbjct: 58 KVVCTRR--------GLSEVPQ------GIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 76 LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
L++ + ++ V F+GL +L L + L + G+ + L +L+ L + +
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-------VIPSGAFEYLSKLRELWLRN 156
Query: 136 SNIKSISDDVFCSLANIQTLNLSR-NSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-L 193
+ I+SI F + ++ L+L + I F G+ L
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE------------------GLFNL 198
Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
+ L+L ++ + + + + L+ L + N +I P +F LSSL+ L + ++ +
Sbjct: 199 KYLNLGMCNIKDMPNLTPLV---GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
+ F + E+ N+L L LF L L+ L L N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 142 bits (359), Expect = 4e-36
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 28/219 (12%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
I +F + SL L++ + L +P F L L+ L + ++ +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPS 164
Query: 120 GSLDGLRELQVLNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
+ + + L L++ ++ IS+ F L N++ LNL +I+D+ L V
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG----- 219
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
L L++S N + S L+ L + N+++S I NAF
Sbjct: 220 --------------LEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDG 264
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
L+SL LN++ N+L SLP LF+ R + E++ N
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 117 bits (294), Expect = 1e-27
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
+ LC A CP CSC + V C+ + +S VP IP + ++ L
Sbjct: 28 VWILCAAIAAAASAGPQNCPSVCSCS----NQFSKVVCTRRGLSEVPQGIPSNTRYLNLM 83
Query: 786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEF 845
N I++I TF L L+VL L N I F
Sbjct: 84 EN------------------------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119
Query: 846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905
+ L L+ L L +N + I +G F L L+ L L N ++S ++ N L ++ LG
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179
Query: 906 NN 907
Sbjct: 180 EL 181
Score = 113 bits (285), Expect = 2e-26
Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 17/203 (8%)
Query: 767 QISTVPPRIPMDATH-VYLD---GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
I ++P + LD + I F G N+ L + I+ +
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLT 215
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
L L+ L + N F L L +L++ +++ I F+ L SL L L
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942
N L S L +++L +NP++C C + L W + C
Sbjct: 276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD-ILWLAWW-LREYIPTNSTCCGRC---- 329
Query: 943 SSPPIR-----KEIDLNSTTCTE 960
+P E+D S C+
Sbjct: 330 HAPMHMRGRYLVEVDQASFQCSA 352
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 195 bits (497), Expect = 1e-55
Identities = 77/278 (27%), Positives = 116/278 (41%), Gaps = 30/278 (10%)
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
S + +S L S+P G+ SS + + N L L G+F KL QL L LSSN L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSSAT---RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI-EDNAFL 359
S + G L L+LS N + + + F L L+ LD +++++ + E + FL
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKNCSALKELDLS 418
SL NL + +S +FNGL L L ++ N+ N F L LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 419 SNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
Q+ ++ +F +L L L + NN +L +
Sbjct: 184 QC-----------------------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Query: 479 ELPSLEVLNLSKNKIHQIEIGTFEK-NKRLAAIRLDSN 515
L SL+VL+ S N I + + LA + L N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 182 bits (465), Expect = 2e-51
Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 15/265 (5%)
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
CSG + + L ++ +GI L LE+N++ + F L+ L L+
Sbjct: 7 CSG----TEIRCNSKGLTSVP--TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 247 ISSNHL--VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
+SSN L + + N ++ +S F LEQL LD ++L
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 117
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL-RNNSIGYIEDNAFLSLYN 363
+ + F+ L LI L++S+ F L L+ L + N+ + F L N
Sbjct: 118 -EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
L + LS+ ++ ++ FN L L L +S+N ++D+ +K ++L+ LD S N I+
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 424 EIP-SALSELP-FLKTLDLGENQIS 446
L P L L+L +N +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 176 bits (448), Expect = 3e-49
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
SK L VP + L + S+ ++S+ VF L + L+LS N + +
Sbjct: 16 SKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73
Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI 231
++ L+ LDLS N + T+ S +L++L +++ + Q+
Sbjct: 74 DFGTTS---------------LKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQM 116
Query: 232 -APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE-LSRGLFHKLEQ 289
+ F++L +L L+IS H G+F+ + + NS E +F +L
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 290 LLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349
L LDLS L + T F L L +LN+S+N +D +K L LQ LD N
Sbjct: 177 LTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 350 IGYIEDNAFLSL-YNLHTIYLSENRIH 375
I + +L + L++N
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 155 bits (393), Expect = 7e-42
Identities = 69/383 (18%), Positives = 126/383 (32%), Gaps = 110/383 (28%)
Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
+ ++ LT + RL+L +N + + F L L + LS N +
Sbjct: 12 IRCNSKGLTSVPTGIPSSA---TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK- 67
Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL 438
S++ ++LK LDLS N ++ + S L L+ L
Sbjct: 68 ---------------------GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106
Query: 439 DLGENQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
D + + ++ E F +L+ L L + + +G+ L SLEVL ++ N
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------ 160
Query: 498 IGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLD 556
+F + +FT L L +L+LS+ L
Sbjct: 161 -----------------SFQENFLPDIFTELRNLTFLDLSQCQLE--------------Q 189
Query: 557 IHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKP 614
+ +SL+ S++ L+ SHN + S++VL + N I + K
Sbjct: 190 LSPTAFNSLS---------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 615 HTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPII 674
+ P + L L N F C C
Sbjct: 241 QEL--------------------------QHFPSS--LAFLNLTQNDFACTCEHQSF--- 269
Query: 675 NNNTSPSMERQYPKIMDLDNVVC 697
++ Q +++++ + C
Sbjct: 270 ----LQWIKDQRQLLVEVERMEC 288
Score = 131 bits (332), Expect = 1e-33
Identities = 65/277 (23%), Positives = 110/277 (39%), Gaps = 40/277 (14%)
Query: 34 GSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEELKISNCKL--VEL 86
L+ VPT I AT L L+ S+ F + L +L +S+ L
Sbjct: 16 SKGLTSVPT------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 87 PVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISD-DV 145
G +LK L ++ N + + + GL +L+ L+ SN+K +S+ V
Sbjct: 70 CSQSDFGTTSLKYLDLS-FN-------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
F SL N+ L++S R F G L +L ++ N +
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFN-----------------GLSSLEVLKMAGNSFQE 164
Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRD 265
T+ R L L L ++ Q++P AF +LSSL++LN+S N+ SL +
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224
Query: 266 ISEIYAQKNSLVELSRGLFHKL-EQLLVLDLSSNHLS 301
+ + N ++ + L L+L+ N +
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 120 bits (303), Expect = 6e-30
Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 11/184 (5%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
++ + + N +F G ++ L + NS E L F L +L L L +
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTN 896
F++L L L + N + + L SLQVL N + + + +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFP 247
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNS- 955
S L + L N F+C+C Q WI D + + + C ++P ++ + + S
Sbjct: 248 SSLAFLNLTQNDFACTCE-HQSFLQWIKDQRQLLVEVERMEC----ATPSDKQGMPVLSL 302
Query: 956 -TTC 958
TC
Sbjct: 303 NITC 306
Score = 105 bits (265), Expect = 7e-25
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 37/196 (18%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + + C+ + +++VP IP AT + L+ N +++P+ VF +
Sbjct: 1 CPSRCSCSGTE------IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQL 54
Query: 804 LSLYVNNSQIEVI-------------------------LNQTFNGLSSLQVLHLENNLIT 838
L ++++ + ++ F GL L+ L +++ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 839 HFYGYE-FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF---RAFDLN 894
+ F +L L L + NG FN L SL+VL++ GN + F
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 895 TNSMLRKVYLGNNPFS 910
N L + L
Sbjct: 175 RN--LTFLDLSQCQLE 188
Score = 51.9 bits (125), Expect = 5e-07
Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 40/149 (26%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
++ +F ++ SL+ L +S+ L + L +
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS----------------------- 224
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSL-ANIQTLNLSRNSIR---DIDTLGFAVRRA 175
LQVL+ S ++I + +++ LNL++N + + ++
Sbjct: 225 --------LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276
Query: 176 SAESNSGEKIECSG-----GMDLRILDLS 199
E++EC+ GM + L+++
Sbjct: 277 RQLLVEVERMECATPSDKQGMPVLSLNIT 305
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 199 bits (507), Expect = 1e-54
Identities = 100/498 (20%), Positives = 192/498 (38%), Gaps = 39/498 (7%)
Query: 195 ILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVS 254
++D S N L + ++ ++ L++ N IS++ + ++LS LRIL IS N +
Sbjct: 4 LVDRSKNGLIHVP--KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59
Query: 255 LPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLI 314
L +F +++ + N LV++S H L LDLS N + I + F +
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICK-EFGNMS 115
Query: 315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS---LYNLHTIYLSE 371
+L L LS L + L + L + + G ED L +LH ++ +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS-----------ALKELDLSSN 420
H I + L + L N S + L ++ + N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 421 AIVEIPSALSELP----FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
+ + I + + + L + + S +L+ L+ ++V + G S +
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNL 535
++ + N + + + + K + +N LTD +L +L L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 536 SENHL----VWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEI 590
N L + +L+ LDI N +S S+ +L+ S N + +
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-KGDCSWTKSLLSLNMSSNILTDT 414
Query: 591 SELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNK 650
+P ++VL +++N IKS+ P L +++ +N + + +
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFD-----RLT 468
Query: 651 TLPEFYLGGNPFDCDCSM 668
+L + +L NP+DC C
Sbjct: 469 SLQKIWLHTNPWDCSCPR 486
Score = 186 bits (473), Expect = 2e-50
Identities = 94/504 (18%), Positives = 174/504 (34%), Gaps = 77/504 (15%)
Query: 79 SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
S L+ +P D+ L I+ + +L + L +L++L IS + I
Sbjct: 8 SKNGLIHVPKDLSQ---KTTILNISQNYIS-------ELWTSDILSLSKLRILIISHNRI 57
Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
+ + VF ++ L+LS N + I C ++L+ LDL
Sbjct: 58 QYLDISVFKFNQELEYLDLSHNKLVKIS--------------------CHPTVNLKHLDL 97
Query: 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS------------------ 240
S N L +L+ L L + + + L+
Sbjct: 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157
Query: 241 -SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH-------------- 285
L+ N S H+V F D+S L + L
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217
Query: 286 KLEQLLVLDLSSNHLSSNHIDE-TTFIGLIRLIILNLSNNELTRIDAKTFKDLVF----- 339
+L L L++ + N + + ++SN +L D
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L + ++ G+ + + N++ + + + + + L SNNLL
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIP---SALSELPFLKTLDLGENQISKIEN-GSFKN 455
+ + + + L+ L L N + E+ +++ L+ LD+ +N +S E G
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ L L + N + + L P ++VL+L NKI I K + L + + SN
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASN 454
Query: 516 FLTDI-NGVFTYLAQLLWLNLSEN 538
L + +G+F L L + L N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 179 bits (455), Expect = 5e-48
Identities = 87/486 (17%), Positives = 170/486 (34%), Gaps = 48/486 (9%)
Query: 36 NLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS 92
L VP DL T LNI + S + T ++ L L IS+ ++ L + VF
Sbjct: 11 GLIHVPKDLSQKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFK 66
Query: 93 GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD-VFCSLAN 151
+ L+ L ++ L K+ S L+ L++S + ++ F +++
Sbjct: 67 FNQELEYLDLSHNKLV-----KI-----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 152 IQTLNLSRNSIRDIDTLGFAVRRASAE--SNSGEKIECSGGMDLRILDLSHNKLRTLGD- 208
++ L LS + L A S E L+ + + +
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 209 -----------------YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
S I + ++++ N ++ +L + + N
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 252 LVSLPEGLFSS---CRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET 308
+ + + ++ + IS + Q L+ L + + S+
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ--SY 294
Query: 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIY 368
+ + I N + + + + LD NN + L L T+
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 369 LSENRIHHI--TAHLFNGLYVLSKLTLSNNLLVNIDSK-AFKNCSALKELDLSSNAIVEI 425
L N++ + A + + L +L +S N + + K +L L++SSN + +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
P +K LDL N+I I K L+ L +L + N + ++ G+ L SL+
Sbjct: 415 IFR-CLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 486 LNLSKN 491
+ L N
Sbjct: 473 IWLHTN 478
Score = 176 bits (448), Expect = 5e-47
Identities = 93/535 (17%), Positives = 177/535 (33%), Gaps = 62/535 (11%)
Query: 410 SALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
L++S N I E+ S + L L+ L + N+I ++ FK Q+L L L N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQI-EIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
+ +S +L+ L+LS N + F +L + L + L +
Sbjct: 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE--KSSVLPI 135
Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI 587
A L + + P L+ + +I N K+ I ++
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN----KEFHFILDVSVKTVAN 191
Query: 588 LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVP 647
LE+S + +++ ++ + L ++ N ++ +
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL-------QLV 244
Query: 648 QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTH 707
+ T+ F + + + I + + V S
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL------KALSIHQVVSDVFGFPQSYIYEI 298
Query: 708 LPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ 767
+ M CP S +D S
Sbjct: 299 FSNMNI---KNFTVSGTRMVH-------------MLCPSKIS-------PFLHLDFSNNL 335
Query: 768 ISTVPPRIPM---DATHVYLDGNTFKTIPN--HVFIGRKNMLSLYVNNSQIEVILNQ-TF 821
++ + + L N K + + K++ L ++ + + +
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNL-EKLSELYLQENRIEYIANGTFNALISLQVLQL 880
+ SL L++ +N++T F L ++ L L N+I+ I L +LQ L +
Sbjct: 396 SWTKSLLSLNMSSNILTDT---IFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNV 451
Query: 881 DGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
N+LKS FD T+ L+K++L NP+ CSC + L W+ NS K +
Sbjct: 452 ASNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 504
Score = 138 bits (349), Expect = 3e-34
Identities = 66/409 (16%), Positives = 136/409 (33%), Gaps = 35/409 (8%)
Query: 35 SNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGL 94
+S PT + L++ + D+ K F N+ L+ L +S L + V + L
Sbjct: 82 VKISCHPTVNLKHLDLSFN---AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 95 RNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR--ELQVLNISSSNIKSISDDVFCSLANI 152
K L + + P L L ++ ++ I D ++AN+
Sbjct: 139 NISKVLLVLGETYGEKED------PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192
Query: 153 QTLNLSRNSIRDI---------------DTLGFAVRRASAESNSGEKI-ECSGGMDLRIL 196
+ N+ + + NS +I + +
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252
Query: 197 DLSHNKLRTLGDYSGI----TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
+S+ KL+ D+ T + L + ++ + S++ I N + +
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
+ S + N L + L +L L L N L
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372
Query: 313 LIRLIILNLSNNELTRIDAK-TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
+ L L++S N ++ + K L L++ +N + + + L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHS 430
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
N+I I + L L +L +++N L ++ F ++L+++ L +N
Sbjct: 431 NKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 123 bits (310), Expect = 2e-29
Identities = 77/388 (19%), Positives = 139/388 (35%), Gaps = 37/388 (9%)
Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
++D S N L + + T ILN+S N ++ + L L+ L + +N
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKT-------TILNISQNYISELWTSDILSLSKLRILIISHN 55
Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI-DSKAFK 407
I Y++ + F L + LS N++ I+ + L L LS N + K F
Sbjct: 56 RIQYLDISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFG 112
Query: 408 NCSALKELDLSSNAIVEIP-SALSELPFLK-TLDLGENQISKIENGSFKNL--QQLTDLR 463
N S LK L LS+ + + ++ L K L LGE K + ++ + L +
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172
Query: 464 LVDNNIGNLSSGMLYELPSLEVLNLSKNKIH-----------QIEIGTFEKNKRLAAIRL 512
+ + + + +LE+ N+ +++ N L I
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
Query: 513 DSNFLTDINGVFTYLAQLLWLNLSENHL----VWFDYAMVPGNLKWLDIHGNYISSLNNY 568
N I + + + ++S L + D+ +LK L IH
Sbjct: 233 TWNSFIRIL-QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291
Query: 569 YE-IKDGLS---IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLA 624
I + S IKN S R++ + S + L +NNL+ + L
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 625 RVDIYANDITKLDLTALRLKPVPQNKTL 652
+ + N + +L A + + L
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQL 379
Score = 94.2 bits (234), Expect = 7e-20
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 6/169 (3%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
+ +VD S+ + VP + T + + N + + + L +++++I+ +
Sbjct: 1 SEFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA-NGTFNALISL 875
F L+ L L +N + L L L N + + F + L
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 876 QVLQLDGNRLKS--FRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
+ L L L+ S + V LQ+ T
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 191 bits (487), Expect = 7e-54
Identities = 66/297 (22%), Positives = 122/297 (41%), Gaps = 15/297 (5%)
Query: 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE 288
+ + A ++ I SS L S+P GL + + + N + +S +
Sbjct: 20 EESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVK---SLDLSNNRITYISNSDLQRCV 76
Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
L L L+SN +++ I+E +F L L L+LS N L+ + + FK L L L+L N
Sbjct: 77 NLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Query: 349 SIGYIEDN-AFLSLYNLHTIYLSEN-RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
+ + F L L + + I F GL L +L + + L + + K+
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
Query: 407 KNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGEN-----QISKIENGSFKNLQQLT 460
K+ + L L + + + ++ L+L + S++ G +L +
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 461 DLRLVDNNIGNLSS--GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
R V +L +L ++ L L S+N++ + G F++ L I L +N
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 189 bits (481), Expect = 6e-53
Identities = 59/286 (20%), Positives = 118/286 (41%), Gaps = 35/286 (12%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
++ LDLS+N++ + + + + LQ L L +N I+ I ++F +L SL L++S N+
Sbjct: 53 AVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L +L F L L L+L N + + + F
Sbjct: 112 LSNLS------------------------SSWFKPLSSLTFLNLLGNPYKTLG-ETSLFS 146
Query: 312 GLIRLIILNLSNNE-LTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
L +L IL + N + T+I K F L FL+ L++ + + E + S+ N+ + L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206
Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVN--------IDSKAFKNCSALKELDLSSNAI 422
+ + + + L L + L ++ + + + ++ ++
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
++ L+++ L L+ NQ+ + +G F L L + L N
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
Score = 159 bits (404), Expect = 7e-43
Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 62/311 (19%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+++ L +SN ++ + NL+ L + + + + S L L+ L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-------TIEEDSFSSLGSLEHL 105
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
++S + + ++S F L+++ LNL N + +
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--------------------- 144
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNL----HLENNEISQIAPNAFVALSSLRILNI 247
F L L + ++I F L+ L L I
Sbjct: 145 -----------------------FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
++ L S S +++S + + L + L+L L + H E
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241
Query: 308 ------TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSL 361
+ I + +++ L ++ K + L L+ N + + D F L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300
Query: 362 YNLHTIYLSEN 372
+L I+L N
Sbjct: 301 TSLQKIWLHTN 311
Score = 135 bits (341), Expect = 2e-34
Identities = 64/305 (20%), Positives = 114/305 (37%), Gaps = 49/305 (16%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
C SS ++ IPS L+ +K+LDL N+I+ I N + L L L N
Sbjct: 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI--NGVFTY 526
I + L SLE L+LS N + + F+ L + L N + +F++
Sbjct: 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147
Query: 527 LAQLLWLNLSENHLV------WFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKN 579
L +L L + F L+ L+I + + S + + ++ +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAG---LTFLEELEIDASDLQSYEP--KSLKSIQNVSH 202
Query: 580 LDASHNRILEISELSIPN--SVEVLFINNNLIK--------SVKPHTFFDKSNLARVDIY 629
L + + + E+ + SVE L + + + + + ++ K V I
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 630 ANDITKL-----DLTALR--------LKPVPQN-----KTLPEFYLGGNPFDCDCSM--- 668
+ ++ ++ L LK VP +L + +L NP+DC C
Sbjct: 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 322
Query: 669 --DWL 671
WL
Sbjct: 323 LSRWL 327
Score = 117 bits (294), Expect = 2e-28
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 44/243 (18%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI----------------- 102
++I SF ++ SLE L +S L L F L +L L +
Sbjct: 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 103 -NTRNLQWDKSKKLDLVP-GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
+ L+ + GL L+ L I +S+++S S+ N+ L L
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208
Query: 161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL-------GDYSGIT 213
+ + V + + L+L L T G+ + +
Sbjct: 209 QHILLLEIFVDVTSS-----------------VECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 214 KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
K +N+ + + + Q+ +S L L S N L S+P+G+F + +I+
Sbjct: 252 KKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 274 NSL 276
N
Sbjct: 311 NPW 313
Score = 103 bits (259), Expect = 9e-24
Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 12/195 (6%)
Query: 749 SCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIGRKNMLS 805
S F + + + + + T + +D + ++ +N+
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYE--------FDNLEKLSELYLQ 857
L ++ Q ++L + SS++ L L + + F+ E + +
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQ 917
+ + + N + L L+ N+LKS + + L+K++L NP+ CSC +
Sbjct: 263 DESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321
Query: 918 ELQTWIIDNSNKVKD 932
L W+ NS K +
Sbjct: 322 YLSRWLNKNSQKEQG 336
Score = 99.0 bits (247), Expect = 3e-22
Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 40/186 (21%)
Query: 726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
+ E + ++C +N C S ++++P + + L
Sbjct: 12 GVIISLSKEESSNQASLSCDRNGIC-----------KGSSGSLNSIPSGLTEAVKSLDLS 60
Query: 786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEF 845
N I N +LQ L L +N I F
Sbjct: 61 NNRITYISNSDL------------------------QRCVNLQALVLTSNGINTIEEDSF 96
Query: 846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKV 902
+L L L L N + +++ F L SL L L GN K+ F T L+ +
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK--LQIL 154
Query: 903 YLGNNP 908
+GN
Sbjct: 155 RVGNMD 160
Score = 35.9 bits (83), Expect = 0.074
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 27 NYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITT--KSFQNIYSLEELKISNCKLV 84
L S LS T+ + K + D S+ K I L EL+ S +L
Sbjct: 232 TDLDTFHFSELSTGETNSLIKK-FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290
Query: 85 ELPVDVFSGLRNLKRLTINTRNLQ 108
+P +F L +L+++ ++T
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWD 314
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 194 bits (495), Expect = 1e-53
Identities = 87/483 (18%), Positives = 161/483 (33%), Gaps = 63/483 (13%)
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
+IS LA + +L+ +SI D+ +
Sbjct: 20 FASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTGIEKLTG----------- 65
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
L L + N + TL +++ L L ++N+++ + L+ L
Sbjct: 66 --------LTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD---VTPLTKLTY 110
Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
LN +N L L S ++ + +N+L E+ QL LD N
Sbjct: 111 LNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK---- 160
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
I + +L L+ S N++T +D L RL+ N+I ++ L
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQL 214
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+ S N++ I L L+ S N L +D L L ++E
Sbjct: 215 TFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLE 268
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
I L+ L KI+ + QL L I L L + P L
Sbjct: 269 ID--LTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLV 321
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFD 544
L L+ ++ ++++ N +L ++ + + D + + L +E +
Sbjct: 322 YLYLNNTELTELDVS---HNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMP 377
Query: 545 YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFI 604
+ N + + + + N I+ G D + N I + + +V F
Sbjct: 378 KETLTNNSLTIAVSPDLLDQFGNPMNIEPG-DGGVYDQATNTITWENLSTDNPAVTYTFT 436
Query: 605 NNN 607
+ N
Sbjct: 437 SEN 439
Score = 173 bits (440), Expect = 2e-46
Identities = 76/425 (17%), Positives = 146/425 (34%), Gaps = 63/425 (14%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
+ +++ D + L +L N+ I+ + L+ L L +SN++
Sbjct: 20 FASEVAAAFEMQAT-DTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI 76
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
+L S +++ + N L L L +L L+ +N L+ +
Sbjct: 77 TTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVS-----Q 125
Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
L LN + N LT ID L LD N I L T+ S N
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQL---TELDCHLNKK--ITKLDVTPQTQLTTLDCSFN 180
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
+I + + +L++L N + +D L LD SSN + EI ++ L
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID--VTPL 232
Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
L D N ++++ L +LT L + ++ + L L +
Sbjct: 233 TQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCR 286
Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL 552
+I+ N +L + + +T+++ + +L++L L+ L D
Sbjct: 287 --KIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD-------- 334
Query: 553 KWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSV 612
+S +K+L + I + S + ++ F ++
Sbjct: 335 ---------VSHNTK---------LKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITM 376
Query: 613 KPHTF 617
T
Sbjct: 377 PKETL 381
Score = 144 bits (364), Expect = 1e-36
Identities = 74/345 (21%), Positives = 130/345 (37%), Gaps = 39/345 (11%)
Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
+ I + L L LD N+SI + L L + + N I
Sbjct: 23 EVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77
Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFL 435
+ + L+ L +N L N+D + L L+ +N + ++ +S+ P L
Sbjct: 78 TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
L+ N +++I+ + QLT+L N ++ + L L+ S NKI +
Sbjct: 130 TYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE 184
Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555
+++ +NK L + D+N +T ++ QL +L+ S N L D + L +
Sbjct: 185 LDVS---QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYF 238
Query: 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPH 615
D N ++ L+ + + L +LEI + IK +
Sbjct: 239 DCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL--- 291
Query: 616 TFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
+ L +D A IT+LDL+ QN L YL
Sbjct: 292 DVTHNTQLYLLDCQAAGITELDLS--------QNPKLVYLYLNNT 328
Score = 135 bits (341), Expect = 1e-33
Identities = 79/433 (18%), Positives = 137/433 (31%), Gaps = 88/433 (20%)
Query: 61 SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120
+ITT +L L + KL L
Sbjct: 75 NITTLDLSQNTNLTYLACDSNKLTNLD--------------------------------- 101
Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
+ L +L LN ++ + + + LN +RN++ +ID
Sbjct: 102 -VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNT--------- 148
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
L LD NK T D + T+ L L N+I+++
Sbjct: 149 -----------QLTELDCHLNKKITKLDVTPQTQ---LTTLDCSFNKITEL---DVSQNK 191
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
L LN +N++ L + ++ + N L E+ L QL D S N L
Sbjct: 192 LLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
+ +D +T L L+ +L ID L++ Q R I++
Sbjct: 246 TE--LDVSTLSKLTT---LHCIQTDLLEIDLTHNTQLIYFQAEGCRK-----IKELDVTH 295
Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
L+ + I + + L L L+N L +D + + LK L +
Sbjct: 296 NTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNA 349
Query: 421 AIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
I + S + ++P L E Q + + N + + + + M E
Sbjct: 350 HIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP--DLLDQFGNPMNIEP 406
Query: 481 PSLEVLNLSKNKI 493
V + + N I
Sbjct: 407 GDGGVYDQATNTI 419
Score = 84.4 bits (209), Expect = 6e-17
Identities = 36/299 (12%), Positives = 82/299 (27%), Gaps = 51/299 (17%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
IT L L + +L + L L ++ L ++D
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL-----TEID----- 228
Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
+ L +L + S + + + +L+ + TL+ + + +ID
Sbjct: 229 VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNT---------- 275
Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
L + D + T+ L L + I+++
Sbjct: 276 ----------QLIYFQAEGCRKIKELDVTHNTQ---LYLLDCQAAGITEL---DLSQNPK 319
Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
L L +++ L L S + + + + S K+ L +
Sbjct: 320 LVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTI 374
Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
+ + + +S + L + + D N+I + +
Sbjct: 375 TM----PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429
Score = 64.3 bits (157), Expect = 1e-10
Identities = 39/263 (14%), Positives = 75/263 (28%), Gaps = 48/263 (18%)
Query: 62 ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
+T + L S L EL S L L L +L
Sbjct: 224 LTEIDVTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL------------E 268
Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
+D Q++ + + I + + L+ I ++D
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL-------------- 314
Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
S L L L++ +L L D S TK L++L N I + + +
Sbjct: 315 ------SQNPKLVYLYLNNTELTEL-DVSHNTK---LKSLSCVNAHIQDFSSVGK--IPA 362
Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
L + +++P+ ++ S A L++ + D +
Sbjct: 363 LNNNFEAEGQTITMPKETLTN---NSLTIAVSPDLLDQF----GNPMNIEPGDGGVYDQA 415
Query: 302 SNHIDETTFIGLIRLIILNLSNN 324
+N I + ++
Sbjct: 416 TNTITWENLSTDNPAVTYTFTSE 438
Score = 56.2 bits (136), Expect = 5e-08
Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 16/156 (10%)
Query: 754 QNWNTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQ 812
N +DC + T P T + N + K + L + +
Sbjct: 146 HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNN 202
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL 872
I + N L L +N +T + L +L+ N + + + L
Sbjct: 203 ITKL---DLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTEL---DVSTL 253
Query: 873 ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNP 908
L L L DL N+ L
Sbjct: 254 SKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286
Score = 56.2 bits (136), Expect = 5e-08
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 16/169 (9%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
DCS +++ + T+ N + + +L+ + + I
Sbjct: 218 DCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEI---DL 271
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
+ L E + + +L L Q I + + L L L+
Sbjct: 272 THNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLN 326
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSC--SCATLQELQTWIIDNSN 928
L D++ N+ L+ + N S + L
Sbjct: 327 NTELTE---LDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQ 372
Score = 51.2 bits (123), Expect = 2e-06
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
DC I+ + + T + N T+ N+ L +++++ +
Sbjct: 48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---D 101
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L+ L L+ + N +T + L+ L N + I + L L
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDC 155
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
N+ + T L + N +
Sbjct: 156 HLNKKITKLDVTPQTQ--LTTLDCSFNKIT 183
Score = 50.8 bits (122), Expect = 2e-06
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
N S +++ + L++L L N+ IT G + L L++L N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
I + + +L L D N+L + D+ + L + N +
Sbjct: 76 ITTL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT 119
Score = 40.1 bits (94), Expect = 0.005
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
+ + ++ LY+NN+++ + + + L+ L N I
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD 353
Query: 840 FYGYEFDNLEKLSELYLQENRI-----EYIANGTFNALISLQVLQLDGNRLKS 887
F + L+ + E + E + N + +S +L GN +
Sbjct: 354 FS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404
Score = 38.5 bits (90), Expect = 0.016
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
N + + + + ++ +LD ++ I +++ + + L +N I
Sbjct: 19 NFASEVAAAFEMQATD-TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT 77
Query: 611 SVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
++ +NL + +N +T LD+T L N
Sbjct: 78 TL---DLSQNTNLTYLACDSNKLTNLDVT--------PLTKLTYLNCDTN 116
Score = 33.9 bits (78), Expect = 0.36
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905
DN + + I + L +L L + + + T L K+
Sbjct: 18 DNFASEVAAAFEMQATDTI---SEEQLATLTSLDCHNSSITDMTGIEKLTG--LTKLICT 72
Query: 906 NNPFS----CSCATLQEL 919
+N + L L
Sbjct: 73 SNNITTLDLSQNTNLTYL 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 189 bits (481), Expect = 2e-53
Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 14/313 (4%)
Query: 310 FIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
R I ++++ L + A + ++ LDL N + I L + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
S N ++ L L L L+NN + + +++ L ++N I + +
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR 118
Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE-LPSLEVLNL 488
K + L N+I+ + + ++ L L N I ++ L +LE LNL
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 489 SKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMV 548
N I+ ++ +L + L SN L + F A + W++L N LV + A+
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234
Query: 549 P-GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
NL+ D+ GN ++ + + L +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Query: 608 LIKSVKPHTFFDK 620
+ + P F D+
Sbjct: 295 CCEDL-PAPFADR 306
Score = 182 bits (465), Expect = 3e-51
Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 18/302 (5%)
Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
+ +I ++ + L L S ++ E+ N L ++S +L +L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED 355
SSN L L L L+L+NN + + ++ L NN+I +
Sbjct: 66 SSNVLYETL----DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC 116
Query: 356 NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF-KNCSALKE 414
+ N+ YL+ N+I + + L L N + ++ + L+
Sbjct: 117 SRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
L+L N I ++ + LKTLDL N+++ + F++ +T + L +N + +
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK 231
Query: 475 GMLYELPSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSN-FLTDINGVFTYLAQLLW 532
L +LE +L N H + F KN+R+ + + LT N + L
Sbjct: 232 A-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 533 LN 534
Sbjct: 291 YG 292
Score = 177 bits (452), Expect = 2e-49
Identities = 62/375 (16%), Positives = 130/375 (34%), Gaps = 70/375 (18%)
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
++ ++ S++K + S N++ L+LS N + I
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-------------- 54
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
+ L +L+LS N L D + L+ L L NN + ++ S+
Sbjct: 55 ---APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIET 103
Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
L+ ++N++ + + L++N ++
Sbjct: 104 LHAANNNISRVSCSRGQG---------------------------KKNIYLANNKITM-- 134
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTF-KDLVFLQRLDLRNNSIGYIEDNAFLSLYN 363
+ + R+ L+L NE+ ++ L+ L+L+ N I ++ +
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--K 192
Query: 364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
L T+ LS N++ + F ++ ++L NN LV I KA + L+ DL N
Sbjct: 193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250
Query: 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS- 482
L+ ++ + + K L + +G+ + +LP+
Sbjct: 251 CGT--------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302
Query: 483 --LEVLNLSKNKIHQ 495
++ L + H
Sbjct: 303 FADRLIALGHHHHHH 317
Score = 177 bits (452), Expect = 2e-49
Identities = 62/384 (16%), Positives = 132/384 (34%), Gaps = 77/384 (20%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
QN + K+++ L + + N+K L ++ L + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------QISAADLAPFT 58
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
+L++LN+SS+ + D SL+ ++TL+L+ N ++++
Sbjct: 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS---------------- 100
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
+ L ++N + + ++ + +N++L NN+I+ + S ++ L+
Sbjct: 101 ------IETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
+ N + ++ + L L+L N + +
Sbjct: 151 LKLNEIDTVNFAEL-----------------------AASSDTLEHLNLQYNFIYD--VK 185
Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
+L L+LS+N+L + F+ + + LRNN + IE A NL
Sbjct: 186 GQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
L N H T L N + + + K + E + + +
Sbjct: 242 FDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
Query: 427 S----ALSELPFLKTLDLGENQIS 446
+ L + + LG +
Sbjct: 293 AYCCEDLPAPFADRLIALGHHHHH 316
Score = 150 bits (382), Expect = 3e-40
Identities = 53/323 (16%), Positives = 127/323 (39%), Gaps = 42/323 (13%)
Query: 381 LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLD 439
+ ++++ L + ++ +KELDLS N + +I + L+ L+ L+
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 440 LGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIG 499
L N + + ++L L L L +N + L PS+E L+ + N I ++
Sbjct: 65 LSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS 117
Query: 500 TFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIH 558
+ K + L +N +T + + +++ +L+L N + ++A + + L
Sbjct: 118 RGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171
Query: 559 GNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFF 618
++L+ +N I ++ + ++ L +++N + + F
Sbjct: 172 -------------------EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQ 211
Query: 619 DKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNT 678
+ + + + N + ++ K + ++ L F L GN F C D+
Sbjct: 212 SAAGVTWISLRNNKLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Query: 679 SPSMERQYPKIMDLDNVVCKMTY 701
+ + ++ K+ + C +
Sbjct: 266 TVA-KQTVKKLTGQNEEECTVPT 287
Score = 96.6 bits (241), Expect = 1e-21
Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 46/258 (17%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLK----RLTINTRNLQWDKSKKLDLVPG 120
+ S+E L +N + + G +N+ ++T L
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT--------------MLRDL 138
Query: 121 SLDGLRELQVLNISSSNIKSIS-DDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
+Q L++ + I +++ ++ S ++ LNL N I D+ +
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK------ 192
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
L+ LDLS NKL +G + + L NN++ I A
Sbjct: 193 -------------LKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLI-EKALRFS 236
Query: 240 SSLRILNISSNHLVSLP-EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
+L ++ N FS + + + Q + + L
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL----GHYG 292
Query: 299 HLSSNHIDETTFIGLIRL 316
+ LI L
Sbjct: 293 AYCCEDLPAPFADRLIAL 310
Score = 87.7 bits (218), Expect = 9e-19
Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 37/242 (15%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S ++ Q + + ++N K+ L ++ L +L+ ++ ++
Sbjct: 112 SRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYL-----DLKLNEIDTVNF-A 162
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
L+ LN+ + I + V A ++TL+LS N + +
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP------------ 208
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
E + + L +NKL + + + L++ L N F
Sbjct: 209 ------EFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFF-S 259
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
+ R+ ++ + L C + + +L +L + L +H
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL-----IALGHHH 314
Query: 300 LS 301
Sbjct: 315 HH 316
Score = 77.3 bits (191), Expect = 3e-15
Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
+ ++ K + N+ L ++ + + I + L++L+L +N++
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
+ ++L L L L N ++ + G S++ L N + +
Sbjct: 73 T--LDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR---VSCSRGQGK 122
Query: 900 RKVYLGNN 907
+ +YL NN
Sbjct: 123 KNIYLANN 130
Score = 72.7 bits (179), Expect = 1e-13
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
+++ + ++ + ++ + + + EL L N + I+ L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQEL 919
+L L N L + + LR + L NN +++ L
Sbjct: 62 LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQELLVGPSIETL 104
Score = 71.6 bits (176), Expect = 3e-13
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
V +S ++ L +++ L L N ++ + KL L L N +
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC-SCATLQELQT 921
+ +L +L+ L L+ N ++ L + ++ NN S SC+ Q +
Sbjct: 75 D--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKKN 124
Score = 70.0 bits (172), Expect = 8e-13
Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 12/143 (8%)
Query: 767 QISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
+ + + L+ N + + ++ +L+ N+ I + + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRV---SCSRGQ 120
Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF-NALISLQVLQLDGNR 884
+ ++L NN IT + ++ L L+ N I+ + + +L+ L L N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 885 LKSFRAFDLNTNSMLRKVYLGNN 907
+ + + L+ + L +N
Sbjct: 181 IYDVKGQVVFAK--LKTLDLSSN 201
Score = 53.5 bits (129), Expect = 2e-07
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 5/128 (3%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
H+ L N + V + +L ++++++ + F + + + L NN +
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
+ L L+ N F + + +V + +K + ++
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 900 RKVYLGNN 907
+ G
Sbjct: 287 TLGHYGAY 294
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 180 bits (458), Expect = 1e-50
Identities = 74/259 (28%), Positives = 111/259 (42%), Gaps = 33/259 (12%)
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
C + L+ + GI Q + L N IS + +F A +L IL
Sbjct: 8 CYNEPKVTT-SCPQQGLQAVP--VGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN-HLSSNHI 305
+ SN L + F+ L L LDLS N L S +
Sbjct: 63 LHSNVLARIDAAAFTG------------------------LALLEQLDLSDNAQLRS--V 96
Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
D TF GL RL L+L L + F+ L LQ L L++N++ + D+ F L NL
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
++L NRI + F GL+ L +L L N + ++ AF++ L L L +N + +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 426 PS-ALSELPFLKTLDLGEN 443
P+ AL+ L L+ L L +N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235
Score = 156 bits (397), Expect = 1e-42
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 15/208 (7%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA- 421
I+L NRI H+ A F L+ L L +N+L ID+ AF + L++LDLS NA
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 422 IVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
+ + L L TL L + ++ G F+ L L L L DN + L +L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENH 539
+L L L N+I + F L + L N + + F L +L+ L L N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 540 LVWFDYAMVPG-------NLKWLDIHGN 560
L + +P L++L ++ N
Sbjct: 213 L-----SALPTEALAPLRALQYLRLNDN 235
Score = 150 bits (381), Expect = 2e-40
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 34/268 (12%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
+ +P + + + L N+IS + SF+ + LT L L N
Sbjct: 10 NEPKVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 469 IGNLSSGMLYELPSLEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
+ + + L LE L+LS N ++ ++ TF RL + LD L ++ G+F
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 527 LAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
LA L +L L +N L NL L +HGN ISS+ + + L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-------AFRGL---- 176
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
+S++ L ++ N + V PH F D L + ++AN+++ L AL
Sbjct: 177 ------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-- 222
Query: 645 PVPQNKTLPEFYLGGNPFDCDCSMDWLP 672
+ L L NP+ CDC L
Sbjct: 223 ---PLRALQYLRLNDNPWVCDCRARPLW 247
Score = 136 bits (344), Expect = 1e-35
Identities = 53/265 (20%), Positives = 101/265 (38%), Gaps = 43/265 (16%)
Query: 18 NRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYS 72
+++ +C L VP I + + L S + SF+ +
Sbjct: 12 PKVTTSCP--------QQGLQAVPV------GIPAASQRIFLHGNRISHVPAASFRACRN 57
Query: 73 LEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLN 132
L L + + L + F+GL L++L ++ N Q + P + GL L L+
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLS-DNAQLR-----SVDPATFHGLGRLHTLH 111
Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD 192
+ ++ + +F LA +Q L L N+++ + F +
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-----------------RDLGN 154
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
L L L N++ ++ + + L L L N ++ + P+AF L L L + +N+L
Sbjct: 155 LTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLV 277
+LP + R + + N V
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238
Score = 128 bits (325), Expect = 5e-33
Identities = 63/283 (22%), Positives = 97/283 (34%), Gaps = 84/283 (29%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVY-------------------- 783
CP C C+++ C +Q + VP IP + ++
Sbjct: 2 CPGACVCYNE---PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58
Query: 784 ----LDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
L N I F G + L + +N+Q+ + TF+GL L LHL+ +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS-----FR---- 889
F L L LYLQ+N ++ + + TF L +L L L GNR+ S FR
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 890 -----------------AF---------DLNTNSM-------------LRKVYLGNNPFS 910
AF L N++ L+ + L +NP+
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Query: 911 CSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL 953
C C + L W+ ++ C S P DL
Sbjct: 239 CDCR-ARPLWAWLQKFRGSSS---EVPC----SLPQRLAGRDL 273
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 181 bits (462), Expect = 2e-49
Identities = 91/541 (16%), Positives = 173/541 (31%), Gaps = 103/541 (19%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
L+E + L E+PV+ + +++ P RE+ V
Sbjct: 12 FLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEW-------ERNAPPGNGEQREMAVS 63
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSGEKIECSGG 190
+ C L L+ + + +
Sbjct: 64 RLRD-----------CLDRQAHELELNNLGLSSLPELPP--------------------- 91
Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
L L S N L L + + L + +S + L L +S+N
Sbjct: 92 -HLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNN 141
Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
L LPE + + I NSL +L L + +N L + E
Sbjct: 142 QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE--LPE--L 191
Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
L L + NN L ++ + L+ + NN + + + +L L TIY
Sbjct: 192 QNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYAD 245
Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430
N + + + L L + +N L ++ +L LD+S N +
Sbjct: 246 NNLLKTLPDLPPS----LEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSELPP 297
Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
L L+ N+I + L +L + +N + L + P LE L S
Sbjct: 298 N---LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASF 346
Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
N + ++ E + L + ++ N L + + + L + P
Sbjct: 347 NHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL------PQ 396
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS--IPNSVEVLFINNNL 608
NLK L + N + + + S+++L + R+++ E + + +E ++
Sbjct: 397 NLKQLHVETNPLREFPD--IPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
Query: 609 I 609
Sbjct: 452 H 452
Score = 179 bits (456), Expect = 1e-48
Identities = 90/471 (19%), Positives = 163/471 (34%), Gaps = 81/471 (17%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS------------ 240
L+ + L + + + +E + AP
Sbjct: 13 LQEPLRHSSNLTEM--PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 241 -SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
L +++ L SLPE + + A NSL EL L+ LLV + +
Sbjct: 71 RQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELPELPQ-SLKSLLVDNNNLKA 125
Query: 300 LSS------------NHIDE-TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
LS N +++ L I+++ NN L ++ L+ +
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAG 181
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
NN + + + +L L IY N + + + L + NN+L +
Sbjct: 182 NNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNILEELPE--L 233
Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
+N L + +N + +P P L+ L++ +N ++ + Q LT L + +
Sbjct: 234 QNLPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSE 286
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
N LS P+L LN S N+I + + L + + +N L ++
Sbjct: 287 NIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL---PAL 335
Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSL-------------NNYYEIKD 573
+L L S NHL P NLK L + N + ++ E+ +
Sbjct: 336 PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 574 GL-SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNL 623
++K L N + E ++ P SVE L +N+ + L
Sbjct: 394 LPQNLKQLHVETNPLREFPDI--PESVEDLRMNSERVVDPYEFAHETTDKL 442
Score = 152 bits (387), Expect = 1e-39
Identities = 74/437 (16%), Positives = 151/437 (34%), Gaps = 79/437 (18%)
Query: 68 QNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQW--DKSKKLDL-------V 118
+ LE L S L ELP ++ L++L N + L + L + +
Sbjct: 88 ELPPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146
Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
P L L+++++ ++++K + D +++ + N + ++ L
Sbjct: 147 P-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPELQNLPF----- 196
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
L + +N L+ L L+++ NN + ++
Sbjct: 197 --------------LTAIYADNNSLKKL-----PDLPLSLESIVAGNNILEEL--PELQN 235
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
L L + +N L +LP+ S + + + N L +L L L L V + +
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLPE-LPQSLTFLDVSENIFS 290
Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358
LS L LN S+NE+ + L+ L++ NN + +
Sbjct: 291 GLSEL---------PPNLYYLNASSNEIRSLCDLPPS----LEELNVSNNKLIELPA--- 334
Query: 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
L + S N + + N L +L + N L ++++L ++
Sbjct: 335 -LPPRLERLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPD----IPESVEDLRMN 385
Query: 419 SNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
+ + E+P L K L + N + + + + + DLR+ + +
Sbjct: 386 -SHLAEVPELPQNL---KQLHVETNPLREFPD----IPESVEDLRMNSERVVDPYEFAHE 437
Query: 479 ELPSLEVLNLSKNKIHQ 495
LE + H
Sbjct: 438 TTDKLEDDVFEHHHHHH 454
Score = 147 bits (373), Expect = 1e-37
Identities = 81/400 (20%), Positives = 155/400 (38%), Gaps = 55/400 (13%)
Query: 237 VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296
V+ + L+ S++L +P + + +E Y + + + ++ V L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 297 SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
L L+N L+ + L+ L NS+ + +
Sbjct: 67 DCLDRQ-------------AHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL 109
Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
SL +L + + + L L +SNN L + +N S LK +D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEKLPE--LQNSSFLKIID 159
Query: 417 LSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
+ +N++ ++P P L+ + G NQ+ ++ +NL LT + +N++ L
Sbjct: 160 VDNNSLKKLP---DLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD-- 212
Query: 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLS 536
SLE + N + ++ + L I D+N L + L LN+
Sbjct: 213 --LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVR 265
Query: 537 ENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
+N+L +P +L +LD+ N S L+ ++ L+AS N I + +L P
Sbjct: 266 DNYLTDLP--ELPQSLTFLDVSENIFSGLSELPP-----NLYYLNASSNEIRSLCDL--P 316
Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
S+E L ++NN + + P L R+ N + ++
Sbjct: 317 PSLEELNVSNNKLIEL-PALP---PRLERLIASFNHLAEV 352
Score = 116 bits (293), Expect = 2e-27
Identities = 53/357 (14%), Positives = 120/357 (33%), Gaps = 44/357 (12%)
Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
+ L ++ LT + +++ + + L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430
+ +L L+N L ++ L+ L S N++ E+P
Sbjct: 67 DCLDRQ-----------AHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQ 111
Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
L L + +S + L L + +N + L L L+++++
Sbjct: 112 SLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDN 162
Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
N + ++ + L I +N L ++ L L + N L P
Sbjct: 163 NSLKKL----PDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PL 215
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
+L+ + N + L E+++ + + A +N + + +L P S+E L + +N +
Sbjct: 216 SLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLT 270
Query: 611 SVKPH----TFFDKSN--LARVDIYANDITKLDLTALRLKPVPQN-KTLPEFYLGGN 660
+ TF D S + + ++ L+ ++ ++ + +L E + N
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327
Score = 61.6 bits (150), Expect = 9e-10
Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 18/163 (11%)
Query: 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
V + + + +S +PP + ++ + N + +P + + V+N+ ++ +
Sbjct: 117 LVDNNNLKALSDLPPLL----EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL-- 168
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
+ SL+ + NN + E NL L+ +Y N ++ + + +SL+ +
Sbjct: 169 --PDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL----PDLPLSLESI 220
Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
N L+ L +Y NN L+
Sbjct: 221 VAGNNILEELPELQNLPF--LTTIYADNNLLKTLPDLPPSLEA 261
Score = 57.7 bits (140), Expect = 2e-08
Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 34/184 (18%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPN--------HVFIGRKNMLS--- 805
+ ++ + +S++P P + N+ +P V LS
Sbjct: 72 QAHELELNNLGLSSLPELPP-HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 806 -----LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
L V+N+Q+E + S L+++ ++NN + D L + N+
Sbjct: 131 PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQ 184
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS-----CSCAT 915
+E + L L + D N LK DL + L + GNN +
Sbjct: 185 LEELPE--LQNLPFLTAIYADNNSLKKL--PDLPLS--LESIVAGNNILEELPELQNLPF 238
Query: 916 LQEL 919
L +
Sbjct: 239 LTTI 242
Score = 53.8 bits (130), Expect = 2e-07
Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
+ S ++ +P P + N +P +N+ L+V + +
Sbjct: 323 NVSNNKLIELPALPP-RLERLIASFNHLAEVPELP----QNLKQLHVEYNPLREF----P 373
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
+ S++ L + ++L + + L +L+++ N + + S++ L+++
Sbjct: 374 DIPESVEDLRMNSHLAE-----VPELPQNLKQLHVETNPLREF----PDIPESVEDLRMN 424
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
R+ F T L ++
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 48.1 bits (115), Expect = 2e-05
Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 22/161 (13%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
+ +P + N + +P + ++Y +N+ ++ +
Sbjct: 201 YADNNSLKKLPDLPLSL-ESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL----P 253
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
+ SL+ L++ +N +T +L L + + + +L L
Sbjct: 254 DLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSEL-------PPNLYYLNAS 305
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFS---CSCATLQEL 919
N ++S DL + L ++ + NN L+ L
Sbjct: 306 SNEIRSL--CDLPPS--LEELNVSNNKLIELPALPPRLERL 342
Score = 46.5 bits (111), Expect = 4e-05
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
+ + ++ +P T + + N F + N+ L ++++I + +
Sbjct: 263 NVRDNYLTDLPELPQS-LTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSLCDL-- 315
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
SL+ L++ NN + +L L N + + +L+ L ++
Sbjct: 316 --PPSLEELNVSNNKLIEL----PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVE 365
Query: 882 GNRLKSF 888
N L+ F
Sbjct: 366 YNPLREF 372
Score = 39.2 bits (92), Expect = 0.009
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 14/121 (11%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
+ L +NN + + L+ L N +T +L+ L
Sbjct: 71 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKA 125
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
+ + L+ L + N+L+ ++ L+ + + NN L+
Sbjct: 126 LSDLPP-------LLEYLGVSNNQLEKLPELQNSSF--LKIIDVDNNSLKKLPDLPPSLE 176
Query: 921 T 921
Sbjct: 177 F 177
Score = 38.1 bits (89), Expect = 0.022
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
+ LQ ++ +T E +N++ +E Y + E A + V +L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 882 GNRLKSFRAFDLNTNSM---------LRKVYLGNNPFSCSCATLQELQ 920
+ +LN + L + N + Q L+
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLK 114
Score = 37.3 bits (87), Expect = 0.033
Identities = 19/137 (13%), Positives = 30/137 (21%), Gaps = 17/137 (12%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
+ +P K+ Y S+ E + V L + L
Sbjct: 17 LRHSSNLTEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ--- 72
Query: 843 YEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV 902
EL L + + L+ L N L + L
Sbjct: 73 --------AHELELNNLGLSSL----PELPPHLESLVASCNSLTELPE-LPQSLKSLLVD 119
Query: 903 YLGNNPFSCSCATLQEL 919
S L+ L
Sbjct: 120 NNNLKALSDLPPLLEYL 136
Score = 34.6 bits (80), Expect = 0.25
Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHL 832
P +P + ++++ N + P+ ++ L +N+ ++ L+
Sbjct: 392 PELPQNLKQLHVETNPLREFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Query: 833 ENNLITH 839
E++ H
Sbjct: 448 EHHHHHH 454
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 179 bits (455), Expect = 1e-47
Identities = 92/535 (17%), Positives = 176/535 (32%), Gaps = 72/535 (13%)
Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
+ L LS N + L D S +++ L+ L L +N I + + F+ L L++S
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSE---LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSR-GLFHKLEQLLVLDLSSNHLSSNHIDET 308
N L ++ +S + + N L F L +L L LS+ +
Sbjct: 110 NRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIY 368
+ L ++ L+L + + + ++ + L L + +S+ L +
Sbjct: 167 AHLHLSCIL-LDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224
Query: 369 LSENRIHHITAHLFNGLYV-------LSKLTLSN---NLLVNIDSKAFKNCSALKELDLS 418
LS +++ L +TL + ++ F ++ L++
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284
Query: 419 SNAIVEIPS------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
+ I E + + L L + + + ++ L ++ +
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344
Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLW 532
S LN ++N KRL + L N L + V +
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404
Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
L + L + W + SI L+ S N +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAE-------------------SILVLNLSSNMLTGSVF 445
Query: 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN--- 649
+P V+VL ++NN I S+ P L +++ +N +LK VP
Sbjct: 446 RCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN----------QLKSVPDGVFD 494
Query: 650 --KTLPEFYLGGNPFDCDCSM-----DWLPIINNNTSPSMERQYPKIMDLDNVVC 697
+L +L NP+DC C +W+ N + R + D+ C
Sbjct: 495 RLTSLQYIWLHDNPWDCTCPGIRYLSEWI-----NKHSGVVRNSAGSVAPDSAKC 544
Score = 162 bits (411), Expect = 6e-42
Identities = 102/540 (18%), Positives = 183/540 (33%), Gaps = 51/540 (9%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
+D S+ + +P L P K L L +N IS++ L +L LRL N
Sbjct: 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI--NGVFTY 526
I +L + LE L++S N++ I L + L N + F
Sbjct: 88 IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 527 LAQLLWLNLSENHLVWFD---YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDAS 583
L +L +L LS D A + + LD+ +I ++ +L
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643
N + + N++ L ++N + + ++T +
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264
Query: 644 KPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSR 703
V + + + ++ T + I + N V +
Sbjct: 265 CSVKLFQFFWPRPVEYLNIY-NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 704 GSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDC 763
+ + L D M CP + S + ++
Sbjct: 324 LYSVFAEMNI---KMLSISDTPFI-------------HMVCPPSPS-------SFTFLNF 360
Query: 764 SEQQISTVPPRIP---MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI----EVI 816
++ + + + L N K + KNM SL + +
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHA 419
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNL-EKLSELYLQENRIEYIANGTFNALISL 875
++T S+ VL+L +N++T F L K+ L L NRI I L +L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKD-VTHLQAL 475
Query: 876 QVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
Q L + N+LKS FD T+ L+ ++L +NP+ C+C ++ L WI +S V++
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 533
Score = 160 bits (405), Expect = 3e-41
Identities = 90/482 (18%), Positives = 167/482 (34%), Gaps = 67/482 (13%)
Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSR 159
L T+ L ++ +L + L EL+VL +S + I+S+ VF +++ L++S
Sbjct: 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 160 NSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQ 219
N ++ I C LR LDLS N L +L
Sbjct: 110 NRLQ--------------------NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149
Query: 220 NLHLENNEISQIAPNAFVALS-------------------SLRILNISSNHLVSLPEGLF 260
L L + Q+ L SL+I N + HLV P LF
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209
Query: 261 SSCRDIS----------EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET-- 308
S ++S I + L L +L+++ H+ +
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269
Query: 309 -TFIGLIRLIILNLSNNELTRIDAKTFKD-----LVFLQRLDLRNNSIGYIEDNAFLSLY 362
F + LN+ N +T + L L ++N + ++ +
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
++ LS + I + L + N+ + + L+ L L N +
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNL----QQLTDLRLVDNNIGNLSSGMLY 478
+ +L+ + ++ + + ++ + + L L N L+ +
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFR 446
Query: 479 ELP-SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLS 536
LP ++VL+L N+I I + L + + SN L + +GVF L L ++ L
Sbjct: 447 CLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505
Query: 537 EN 538
+N
Sbjct: 506 DN 507
Score = 93.8 bits (233), Expect = 9e-20
Identities = 34/271 (12%), Positives = 82/271 (30%), Gaps = 18/271 (6%)
Query: 737 ACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHV 796
C + N ++VD S + ++ VP +P + L N+ +
Sbjct: 15 VCALALIVGSMTPF---SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPD 71
Query: 797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
+ L +++++I + F L+ L + +N + + + L L L
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDL 128
Query: 857 QENRIEYI-ANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCAT 915
N + + F L L L L + + + L + L +
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGE 187
Query: 916 LQELQ------TWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIA 969
+ LQ ++ + N + V + ++ + ++
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQ----VNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 970 SIMVSDYLPFMIITFLMFLVFLILIIFMFVF 1000
+ L + + + + +F F +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 157 bits (400), Expect = 5e-43
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 8/206 (3%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
+ LDL N + ++ +F S L + LS I I + L LS L L+ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIE-NGSFKNLQ 457
++ AF S+L++L + + + + L LK L++ N I + F NL
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEV----LNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
L L L N I ++ L L + + L+LS N ++ I+ G F K RL + LD
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALD 208
Query: 514 SNFLTDI-NGVFTYLAQLLWLNLSEN 538
+N L + +G+F L L + L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 156 bits (396), Expect = 2e-42
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
LDLS N L + +F L +L+LS E+ I+ ++ L L L L N I
Sbjct: 32 NLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCS 410
+ AF L +L + E + + L L +L +++NL+ + + F N +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 411 ALKELDLSSNAIVEIP----SALSELPFLK-TLDLGENQISKIENGSFKNLQQLTDLRLV 465
L+ LDLSSN I I L ++P L +LDL N ++ I+ G+FK + +L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALD 208
Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKN 491
N + ++ G+ L SL+ + L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 151 bits (384), Expect = 5e-41
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 21/234 (8%)
Query: 179 SNSGEKIECSGG----------MDLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENN 226
+C + LDLS N LR L + + LQ L L
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE---LQVLDLSRC 62
Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
EI I A+ +LS L L ++ N + SL G FS + ++ A + +L L
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ----R 342
L+ L L+++ N + S + E F L L L+LS+N++ I + L +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
LDL N + +I+ AF + L + L N++ + +F+ L L K+ L N
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 131 bits (331), Expect = 8e-34
Identities = 55/273 (20%), Positives = 91/273 (33%), Gaps = 37/273 (13%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+IP L K LDL N + + + SF + +L L L
Sbjct: 6 VVPN-ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
I + G L L L L+ N I + +G F L + L + N +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 527 LAQLLWLNLSENHLVWFDYAMV---PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDAS 583
L L LN++ N + F NL+ LD+ N I S+ L +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLH--QMPLL 178
Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643
+ L ++ N + ++P F + L + + N + +
Sbjct: 179 NLS---------------LDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD- 221
Query: 644 KPVPQNKTLPEFYLGGNPFDCDCSM-----DWL 671
+ +L + +L NP+DC C WL
Sbjct: 222 ----RLTSLQKIWLHTNPWDCSCPRIDYLSRWL 250
Score = 125 bits (316), Expect = 7e-32
Identities = 64/286 (22%), Positives = 102/286 (35%), Gaps = 79/286 (27%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
+T+NL + L S ELQVL++S I++I D + SL+
Sbjct: 17 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
++ TL L+ N I+ + G +S
Sbjct: 77 HLSTLILTGNPIQSLAL---------------------------------------GAFS 97
Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
G++ LQ L ++ + L +L+ LN++ N + S
Sbjct: 98 GLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------------- 140
Query: 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII----LNLSNNEL 326
F L L LDLSSN + S I T L ++ + L+LS N +
Sbjct: 141 ---------LPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
I FK++ L+ L L N + + D F L +L I+L N
Sbjct: 190 NFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 117 bits (296), Expect = 3e-29
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 11/166 (6%)
Query: 745 PKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNML 804
P C E +P +P ++ L N + + ++ F +
Sbjct: 2 PCVEVV------PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55
Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
L ++ +I+ I + + LS L L L N I F L L +L E + +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 865 ANGTFNALISLQVLQLDGNRLKSF---RAFDLNTNSMLRKVYLGNN 907
N L +L+ L + N ++SF F TN L + L +N
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDLSSN 159
Score = 113 bits (284), Expect = 1e-27
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 46/267 (17%)
Query: 16 SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNI 70
+ I+ C N +P N+ L L + + SF +
Sbjct: 6 VVPNITYQCM--------ELNFYKIPD------NLPFSTKNLDLSFNPLRHLGSYSFFSF 51
Query: 71 YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
L+ L +S C++ + + L +L L + +Q L G+ GL LQ
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLSSLQK 104
Query: 131 LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
L +N+ S+ + L ++ LN++ N I+ + S
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----------------FSNL 148
Query: 191 MDLRILDLSHNKLRTL--GDYSGITKFRRLQ-NLHLENNEISQIAPNAFVALSSLRILNI 247
+L LDLS NK++++ D + + L +L L N ++ I P AF + L+ L +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 207
Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKN 274
+N L S+P+G+F + +I+ N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 113 bits (284), Expect = 1e-27
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 767 QISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI-EVILNQTFN 822
I ++ + + ++ N K + L V ++ I L + F+
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKL----SELYLQENRIEYIANGTFNALISLQVL 878
L++L+ L L +N I Y + L ++ L L N + +I G F + L+ L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKEL 205
Query: 879 QLDGNRLKS--FRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI 936
LD N+LKS FD T+ L+K++L NP+ CSC + L W+ NS K +
Sbjct: 206 ALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 263
Query: 937 SCVIDESSPPIR 948
S S P+R
Sbjct: 264 SG----SGKPVR 271
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 167 bits (425), Expect = 1e-42
Identities = 143/558 (25%), Positives = 215/558 (38%), Gaps = 82/558 (14%)
Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNS----IRDID 166
+ V SL L L+ L +S+S+I S+S F A++ +L+LSRNS + +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLT 120
Query: 167 TLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
+LG CSG L+ L++S N L G SG K L+ L L N
Sbjct: 121 SLG----------------SCSG---LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 227 EISQIAPNAFVA---LSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSR 281
IS +V L+ L IS N + + S C ++ + N+ +
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP- 217
Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELT-RIDAKTFKDLVF 339
L LD+S N LS + + I L +LN+S+N+ I K
Sbjct: 218 -FLGDCSALQHLDISGNKLSGD-F--SRAISTCTELKLLNISSNQFVGPIPPLPLKS--- 270
Query: 340 LQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNL 397
LQ L L N G I D + L + LS N + + + +L L LS+N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNN 329
Query: 398 LV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPF-LKTLDLGENQIS-KIENGSF 453
+ LK LDLS N E+P +L+ L L TLDL N S I
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 454 KN-LQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLA 508
+N L +L L +N G + L L L+LS N + I +G+ +L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSL---SKLR 445
Query: 509 AIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYAMVP------GNLKWLDIHGNY 561
++L N L +I Y+ L L L N L +P NL W+ + N
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNR 501
Query: 562 IS-SLNNYYEIKDGLSIKNLDASHNRI-----LEISELSIPNSVEVLFINNNLIKSVKPH 615
++ + I ++ L S+N E+ + S+ L +N NL P
Sbjct: 502 LTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCR---SLIWLDLNTNLFNGTIPA 556
Query: 616 TFFDKSNLARVDIYANDI 633
F +S + A
Sbjct: 557 AMFKQSGKIAANFIAGKR 574
Score = 165 bits (421), Expect = 3e-42
Identities = 121/543 (22%), Positives = 211/543 (38%), Gaps = 79/543 (14%)
Query: 128 LQVLNISSSNIKSISDDV---FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
+ +++SS + V SL +++L LS + I +G
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI------------------NGSV 93
Query: 185 IECSGGMDLRILDLSHNKLR-TLGDYSGITKFRRLQNLHLENNEIS-QIAPNAFVALSSL 242
L LDLS N L + + + L+ L++ +N + + + L+SL
Sbjct: 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153
Query: 243 RILNISSNHLV-SLPEGL--FSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSN 298
+L++S+N + + G C ++ + N + ++ LE LD+SSN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE---FLDVSSN 210
Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNA 357
+ S+ I L L++S N+L+ ++ L+ L++ +N G I
Sbjct: 211 NFSTG-IPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-- 265
Query: 358 FLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
L L +L + L+EN+ I L L+ L LS N F +CS L+ L
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 417 LSSNAIV-EIP-SALSELPFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLVDNNI-GNL 472
LSSN E+P L ++ LK LDL N+ S ++ L L L NN G +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 473 SSGML-YELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLAAIRLDSNFLT-DINGVFTYL 527
+ +L+ L L N +I + L ++ L N+L+ I L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 528 AQLLWLNLSENHLVWFDYAMVP------GNLKWLDIHGNYIS-----SLNNYYEIKDGLS 576
++L L L N L +P L+ L + N ++ L+N +
Sbjct: 442 SKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC------TN 491
Query: 577 IKNLDASHNRI-----LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN 631
+ + S+NR+ I L ++ +L ++NN P D +L +D+ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLE---NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 632 DIT 634
Sbjct: 549 LFN 551
Score = 165 bits (420), Expect = 5e-42
Identities = 109/521 (20%), Positives = 183/521 (35%), Gaps = 69/521 (13%)
Query: 145 VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-LRILDLSHNKL 203
V C + +++LS + + L L LS++ +
Sbjct: 45 VTCRDDKVTSIDLSSKPLN---------------VGFSAVSSSLLSLTGLESLFLSNSHI 89
Query: 204 RTLGDYSGITKFRRLQNLHLENNEIS-QI-APNAFVALSSLRILNISSNHLV-SLPEGLF 260
G SG L +L L N +S + + + S L+ LN+SSN L
Sbjct: 90 N--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 261 SSCRDISEIYAQKNSL---VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
+ + NS+ + L +L L +S N +S + + L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG----DVDVSRCVNLE 203
Query: 318 ILNLSNNELT-RIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH 375
L++S+N + I D LQ LD+ N + G + L + +S N+
Sbjct: 204 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260
Query: 376 -HITAHLFNGLYVLSKLTLSNNLLV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSEL 432
I L LS L+ N I C L LDLS N +P
Sbjct: 261 GPIPPLPLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 433 PFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSK 490
L++L L N S ++ + ++ L L L N G L + SL L+LS
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 491 NKIH-QI--EIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYA 546
N I + KN L + L +N T I + ++L+ L+LS N+L
Sbjct: 378 NNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS----G 432
Query: 547 MVP------GNLKWLDIHGNYIS-SLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV 599
+P L+ L + N + + E+ +++ L N + IP+ +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDL----TGEIPSGL 486
Query: 600 ------EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT 634
+ ++NN + P NLA + + N +
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Score = 158 bits (402), Expect = 8e-40
Identities = 113/496 (22%), Positives = 178/496 (35%), Gaps = 70/496 (14%)
Query: 69 NIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRE 127
+ SL+ L ++ K E+P + L L ++ + VP
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-------GAVPPFFGSCSL 319
Query: 128 LQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDI--DTLGFAVRRASAESNSGEK 184
L+ L +SS+N + D + ++ L+LS N ++L
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--------------- 364
Query: 185 IECSGGMDLRILDLSHNKLR-TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLR 243
S L LDLS N + LQ L+L+NN + P S L
Sbjct: 365 -NLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 244 ILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLS 301
L++S N+L ++P L S + ++ N L E+ + L ++ L L L N L+
Sbjct: 422 SLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLT 479
Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLS 360
I L ++LSNN LT K L L L L NNS G I
Sbjct: 480 GE-IPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGD 536
Query: 361 LYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
+L + L+ N + I A +F S ++ N + KN KE +
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFK----QSGK-IAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 420 NAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN-------- 468
N + L+ L ++ + +F N + L + N
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLAAIRLDSNFLT-DINGVF 524
IG++ L +LNL N I I E+G + L + L SN L I
Sbjct: 652 IGSMP--------YLFILNLGHNDISGSIPDEVGDL---RGLNILDLSSNKLDGRIPQAM 700
Query: 525 TYLAQLLWLNLSENHL 540
+ L L ++LS N+L
Sbjct: 701 SALTMLTEIDLSNNNL 716
Score = 157 bits (400), Expect = 2e-39
Identities = 113/540 (20%), Positives = 162/540 (30%), Gaps = 131/540 (24%)
Query: 66 SFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
+LE L +S+ +P L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP---------------------------------FLGD 221
Query: 125 LRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGE 183
LQ L+IS + + S + + ++ LN+S N G
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQF------------------VGP 262
Query: 184 KIECSGGMDLRILDLSHNKLRTLGDYSG------ITKFRRLQNLHLENNEISQIAPNAFV 237
I L+ L L+ NK +G L L L N P F
Sbjct: 263 -IPPLPLKSLQYLSLAENKF------TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 238 ALSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDL 295
+ S L L +SSN+ LP R + + N EL L + LL LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELT-RIDAKTFKDLVFLQRLDLRNNSI-GYI 353
SSN+ S + L L L NN T +I T + L L L N + G I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTI 434
Query: 354 EDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
+ SL L + L N + I L + L L L N L NC+ L
Sbjct: 435 PSS-LGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 413 KELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDN 467
+ LS+N + EIP + L L L L N S G + + L L L N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLDLNTN 548
Query: 468 N--------IGNLSSGM--------------------------------------LYELP 481
+ S + L L
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHL 540
+ N++ TF+ N + + + N L+ I + L LNL N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Score = 142 bits (360), Expect = 1e-34
Identities = 108/454 (23%), Positives = 174/454 (38%), Gaps = 76/454 (16%)
Query: 65 KSFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
F + LE L +S+ ELP+D +R LK L ++ +P SL
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-------GELPESLT 364
Query: 124 GLR-ELQVLNISSSNIK-SISDDVF-CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
L L L++SS+N I ++ +Q L L N
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF------------------ 406
Query: 181 SGEKIECSGGM-DLRILDLSHNKLRTLGDYSG-----ITKFRRLQNLHLENNEISQIAPN 234
+G+ +L L LS N L SG + +L++L L N + P
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYL------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 235 AFVALSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLV 292
+ + +L L + N L +P GL S+C +++ I N L E+ + + +LE L +
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAI 518
Query: 293 LDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELT-RIDAKTFKDLVFLQRLDLRNNSI 350
L LS+N S +I +G LI L+L+ N I A FK Q + N I
Sbjct: 519 LKLSNNSFSG-NIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFI 570
Query: 351 GYIEDNAFLSLYNLHTIYLSENRIH---HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK 407
+ + + N + + L L + +++ + S F
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFD 629
Query: 408 NCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENG----SFKNLQQLTDL 462
N ++ LD+S N + IP + +P+L L+LG N IS G +L+ L L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----GSIPDEVGDLRGLNIL 685
Query: 463 RLVDNNIGNLSSGM----LYELPSLEVLNLSKNK 492
L N + G + L L ++LS N
Sbjct: 686 DLSSNKL----DGRIPQAMSALTMLTEIDLSNNN 715
Score = 51.4 bits (124), Expect = 2e-06
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 12/153 (7%)
Query: 780 THVYLDGNTFK-TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
++ L N F IP+ + + L ++ + + F S L+ L L +N +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 839 -HFYGYEFDNLEKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKS--FRAFDLN 894
+ L L L N + N SL L L N N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 895 TNSMLRKVYLGNNPFS-------CSCATLQELQ 920
+ L+++YL NN F+ +C+ L L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Score = 48.8 bits (117), Expect = 1e-05
Identities = 42/176 (23%), Positives = 60/176 (34%), Gaps = 39/176 (22%)
Query: 780 THVYLDGNTFK-TIPNHVFIGRKNMLS-LYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
+ L N F I ++ KN L LY+ N+ + T + S L LHL N
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-- 428
Query: 838 THFYG---YEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL--------- 885
+ G +L KL +L L N +E + +L+ L LD N L
Sbjct: 429 -YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 886 --KSFRAFDLNTN-------------SMLRKVYLGNNPFS-------CSCATLQEL 919
+ L+ N L + L NN FS C +L L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Score = 46.1 bits (110), Expect = 7e-05
Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 40/176 (22%)
Query: 780 THVYLDGNTFK-TIPNHVFIGR-KNMLSLYVNNSQIE-VILNQTFNGLSSLQVLHLENNL 836
T + L N+ + +G + L V+++ ++ L+SL+VL L N
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 837 IT---HFYGYEFDNLEKLSELYLQENRIEYIANGT--FNALISLQVLQLDGN-------- 883
I+ D +L L + N+I +G + ++L+ L + N
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRCVNLEFLDVSSNNFSTGIPF 218
Query: 884 --RLKSFRAFDLNTN-------------SMLRKVYLGNNPFS-----CSCATLQEL 919
+ + D++ N + L+ + + +N F +LQ L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274
Score = 43.0 bits (102), Expect = 8e-04
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 780 THVYLDGNTFK-TIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
++L N TIP+ +G + L + + +E + Q + +L+ L L+ N +
Sbjct: 421 VSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 838 THFYG---YEFDNLEKLSELYLQENRIEYIANGTF----NALISLQVLQLDGNRLKSFRA 890
T G N L+ + L NR+ G L +L +L+L N
Sbjct: 479 T---GEIPSGLSNCTNLNWISLSNNRL----TGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 891 FDLNTNSMLRKVYLGNNPFS 910
+L L + L N F+
Sbjct: 532 AELGDCRSLIWLDLNTNLFN 551
Score = 41.8 bits (99), Expect = 0.002
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 821 FNGLSSLQVLHLENNLITHFYG-----YEFDNLEKLSELYLQENRIEY-IANGTFNALIS 874
F +SL L L N G + L L + N +++ L S
Sbjct: 96 FKCSASLTSLDLSRN---SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 875 LQVLQLDGNRL--KSFRAFDLNTN-SMLRKVYLGNNPFS-----CSCATLQEL 919
L+VL L N + + + L+ L+ + + N S C L+ L
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Score = 38.0 bits (89), Expect = 0.023
Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 28/145 (19%)
Query: 780 THVYLDGNTFK-TIPNHVFIGRK-NMLSLYVNNSQIEVILNQTFNG------LSSLQVLH 831
H+ + GN + + +L++ N F G L SLQ L
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQ----------FVGPIPPLPLKSLQYLS 275
Query: 832 LENNLIT-HFYGYEFDNLEKLSELYLQENRIEYIANGT----FNALISLQVLQLDGNRLK 886
L N T + + L+ L L N G F + L+ L L N
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHF----YGAVPPFFGSCSLLESLALSSNNFS 331
Query: 887 -SFRAFDLNTNSMLRKVYLGNNPFS 910
L L+ + L N FS
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFS 356
Score = 36.0 bits (84), Expect = 0.11
Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 776 PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENN 835
++ G + I N N + + I ++ N LS+ ++ +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMK---KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 836 LITHFYGYEFDNLEKLSELYLQENRIEYIANG----TFNALISLQVLQLDGNRL 885
+ FDN + L + N + G ++ L +L L N +
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLS----GYIPKEIGSMPYLFILNLGHNDI 668
Score = 30.6 bits (70), Expect = 4.4
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY--IANGTFNALISLQVLQLDGN 883
Q + N I N E + N +E+ I + N L + +
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 884 RLKSFRAFDLNTNSMLRKVYLGNNPFS 910
+ + N + + + N S
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLS 645
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 148 bits (375), Expect = 2e-40
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
CP C+C + N+VDC + ++ +P +P T + L+ NT K IP F K
Sbjct: 4 HCPAACTC------SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKK 57
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ + ++N+QI + F GL SL L L N IT F+ L L L L N+I
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 863 YIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
+ F L +L +L L N+L++ F ++ ++L NPF C C L+ L
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA--IQTMHLAQNPFICDC-HLKWLA 174
Query: 921 TWIIDNSNKV 930
++ N +
Sbjct: 175 DYLHTNPIET 184
Score = 112 bits (281), Expect = 7e-28
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
+ LE N I I P AF LR +++S+N + L F R ++ + N + E
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
L + LF L L +L L++N ++ + F L L +L+L +N+L I TF L
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 339 FLQRLDLRNN 348
+Q + L N
Sbjct: 153 AIQTMHLAQN 162
Score = 107 bits (268), Expect = 4e-26
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
+ L N+I I AF L I LS N+I + F GL L+ L L N +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
+ F+ +L+ L L++N I + A +L L L L +N++ I G+F L+ +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 460 TDLRLVDN 467
+ L N
Sbjct: 155 QTMHLAQN 162
Score = 103 bits (260), Expect = 4e-25
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
E+ L N I IP A S L+ +DL NQIS++ +F+ L+ L L L N I
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
L + L SL++L L+ NKI+ + + F+ L + L N L I G F+ L +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 531 LWLNLSEN------HLVWF 543
++L++N HL W
Sbjct: 155 QTMHLAQNPFICDCHLKWL 173
Score = 100 bits (250), Expect = 9e-24
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
+ L N + I F +L ++LSNN+++ + F+ L L L L N I
Sbjct: 36 EIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
+ + F L++L + L+ N+I+ + F L+ L+ L+L +N L I F A
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 412 LKELDLSSN 420
++ + L+ N
Sbjct: 154 IQTMHLAQN 162
Score = 76.6 bits (189), Expect = 1e-15
Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 49/184 (26%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
K LT ++ +++ + PG+ ++L+ +++S++ I ++ D F L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
++ +L L N I ++ +
Sbjct: 81 SLNSLVLYGNKITELPK---------------------------------------SLFE 101
Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
G+ LQ L L N+I+ + +AF L +L +L++ N L ++ +G FS R I ++
Sbjct: 102 GLFS---LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 271 AQKN 274
+N
Sbjct: 159 LAQN 162
Score = 74.3 bits (183), Expect = 7e-15
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 37 LSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEELKISNCKLVELPVDVF 91
L+ +PT N+ T + L+ I +F L + +SN ++ EL D F
Sbjct: 23 LTEIPT------NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 92 SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN 151
GLR+L L + + +L +GL LQ+L ++++ I + D F L N
Sbjct: 77 QGLRSLNSLVLYGNKIT-------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 152 IQTLNLSRNSIRDIDTLGF 170
+ L+L N ++ I F
Sbjct: 130 LNLLSLYDNKLQTIAKGTF 148
Score = 72.0 bits (177), Expect = 4e-14
Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 50/186 (26%)
Query: 504 NKRLAAI-----------RLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG- 550
K L I RL+ N + I G F+ +L ++LS N + + P
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS----ELAPDA 75
Query: 551 -----NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
+L L ++GN I+ L + +GL S+++L +N
Sbjct: 76 FQGLRSLNSLVLYGNKITELPK--SLFEGLF---------------------SLQLLLLN 112
Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
N I ++ F D NL + +Y N + + P+ +T+ +L NPF CD
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQTM---HLAQNPFICD 167
Query: 666 CSMDWL 671
C + WL
Sbjct: 168 CHLKWL 173
Score = 71.2 bits (175), Expect = 8e-14
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
++ E+++ + +P FS + L+R+ ++ + +L P + GLR L L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-------ELAPDAFQGLRSLNSL 85
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
+ + I + +F L ++Q L L+ N I + F
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-----------------QDLH 128
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
+L +L L NKL+T+ + R +Q +HL N
Sbjct: 129 NLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQN 162
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 147 bits (374), Expect = 3e-40
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 19/218 (8%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIP-NHVFIGRK 801
CP+ C C VDCS Q+++ +P IP + L+ N F + +F
Sbjct: 4 ACPEKCRC------EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLP 57
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
+ + +N++I I F G S + + L +N + + F LE L L L+ NRI
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQEL 919
+ N +F L S+++L L N++ + AFD + L + L NPF+C+C L L
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--LSTLNLLANPFNCNC-YLAWL 174
Query: 920 QTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTT 957
W+ + C P KEI +
Sbjct: 175 GEWLRKKRIVTG---NPRC----QKPYFLKEIPIQDVA 205
Score = 107 bits (270), Expect = 2e-26
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 341 QRLDLRNNSIGYIEDNA-FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L L NN +E F L L I S N+I I F G ++++ L++N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
N+ K FK +LK L L SN I + + + L ++ L L +NQI+ + G+F L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 459 LTDLRLVDN 467
L+ L L+ N
Sbjct: 155 LSTLNLLAN 163
Score = 105 bits (263), Expect = 2e-25
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 413 KELDLSSNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
EL L++N + + +LP L+ ++ N+I+ IE G+F+ + ++ L N +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQ 529
N+ M L SL+ L L N+I + +F + + L N +T + G F L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 530 LLWLNLSEN------HLVWF 543
L LNL N +L W
Sbjct: 155 LSTLNLLANPFNCNCYLAWL 174
Score = 100 bits (251), Expect = 7e-24
Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 36/180 (20%)
Query: 179 SNSGEKIECSGGM----------DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228
G ++CS L L++N+ L K +L+ ++ NN+I
Sbjct: 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI 69
Query: 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE 288
+ I AF S + + ++SN L ++ +F LE
Sbjct: 70 TDIEEGAFEGASGVNEILLTSNRLENVQH------------------------KMFKGLE 105
Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
L L L SN ++ + +FIGL + +L+L +N++T + F L L L+L N
Sbjct: 106 SLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 98.2 bits (245), Expect = 4e-23
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
L L++N + F L +L +N SNN++T I+ F+ + + L +N +
Sbjct: 36 ELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
++ F L +L T+ L NRI + F GL + L+L +N + + AF +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 412 LKELDLSSN 420
L L+L +N
Sbjct: 155 LSTLNLLAN 163
Score = 80.1 bits (198), Expect = 8e-17
Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 101/265 (38%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE-NGSFKNLQQLTDLRLVD 466
C +D S+ + +IP + + L L N+ + +E G FK L QL + +
Sbjct: 10 RCEG-TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN 66
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
N I ++ G + + L+ N++ ++ + +F
Sbjct: 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQ-----------------------HKMFKG 103
Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR 586
L L L L N + + + N + GLS
Sbjct: 104 LESLKTLMLRSNRI----------------------TCVGN--DSFIGLS---------- 129
Query: 587 ILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646
SV +L + +N I +V FD L +L
Sbjct: 130 -----------SVRLLSLYDNQITTV-APGAFDT-----------------LHSL----- 155
Query: 647 PQNKTLPEFYLGGNPFDCDCSMDWL 671
TL L NPF+C+C + WL
Sbjct: 156 ---STL---NLLANPFNCNCYLAWL 174
Score = 69.7 bits (171), Expect = 3e-13
Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 50/180 (27%)
Query: 72 SLEELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
EL+++N + L +F L L+++ + + D+ G+ +G +
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------DIEEGAFEGASGVNE 85
Query: 131 LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
+ ++S+ ++++ +F L +++TL L N I + F
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF-------------------- 125
Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
++ L L +N+I+ +AP AF L SL LN+ +N
Sbjct: 126 ----------------------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 68.5 bits (168), Expect = 7e-13
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 64 TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
T F+ + L ++ SN K+ ++ F G + + + + L+ ++
Sbjct: 50 TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-------NVQHKMFK 102
Query: 124 GLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
GL L+ L + S+ I + +D F L++++ L+L N I +
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Score = 46.2 bits (110), Expect = 2e-05
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
++ K F+ + SL+ L + + ++ + D F GL +++ L++ + + P
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-------TVAP 146
Query: 120 GSLDGLRELQVLNISS 135
G+ D L L LN+ +
Sbjct: 147 GAFDTLHSLSTLNLLA 162
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 151 bits (384), Expect = 3e-40
Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 13/249 (5%)
Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-G 351
+ ++ I I L +L I F L+++++ N +
Sbjct: 14 FLCQESKVTE--IPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 352 YIEDNAFLSLYNLHTIYLSE-NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
IE + F +L LH I + + N + +I F L L L +SN + ++ +
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128
Query: 411 ALKELDLSSNA-IVEIPS-ALSELPF-LKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
LD+ N I I + L F L L +N I +I N +F Q +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
N+ L + + + +L++S+ +IH + E K+L + L + L
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL--RARSTYNLKKL-PTLEKL 245
Query: 528 AQLLWLNLS 536
L+ +L+
Sbjct: 246 VALMEASLT 254
Score = 149 bits (379), Expect = 1e-39
Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 11/233 (4%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ-IAPNAFVALSSLRILNIS-S 249
+ L KLR + + + F L+ + + N++ + I + F L L + I +
Sbjct: 31 NAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN-HLSSNHIDET 308
N+L+ + F + ++ + + L Q ++LD+ N ++ + I+
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--IERN 147
Query: 309 TFIGL-IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTI 367
+F+GL +IL L+ N + I F + NN++ + ++ F +
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207
Query: 368 YLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
+S RIH + ++ L L + N + + AL E L+
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYP 256
Score = 125 bits (316), Expect = 3e-31
Identities = 55/281 (19%), Positives = 103/281 (36%), Gaps = 57/281 (20%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP-GSLDGLRELQV 130
+ EL+ KL + FSG +L+++ I+ ++ L+++ L +L
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-------QNDVLEVIEADVFSNLPKLHE 83
Query: 131 LNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
+ I +N + I+ + F +L N+Q L +S I+ + +
Sbjct: 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-----------------IH 126
Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS-LRILNIS 248
+ +LD+ N I I N+FV LS IL ++
Sbjct: 127 SLQKVLLDIQD------------------------NINIHTIERNSFVGLSFESVILWLN 162
Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET 308
N + + F+ + + N+L EL +FH ++LD+S + S +
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPSY 220
Query: 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349
L +L + N L ++ + LV L L S
Sbjct: 221 GLENLKKLRARSTYN--LKKLPT--LEKLVALMEASLTYPS 257
Score = 124 bits (314), Expect = 5e-31
Identities = 60/348 (17%), Positives = 109/348 (31%), Gaps = 54/348 (15%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
CS + + + EIPS L L ++ I+ G+F L + + N+
Sbjct: 9 CS-NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65
Query: 469 I-GNLSSGMLYELPSLEVLNLSK-NKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFT 525
+ + + + LP L + + K N + I F+ L + + + + + +
Sbjct: 66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125
Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
+ Q + L++ +N + I N L+ L + N
Sbjct: 126 HSLQKVLLDIQDN-------------INIHTIERNSFVGLSF--------ESVILWLNKN 164
Query: 586 RILEISE--LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL------D 637
I EI + E+ +NN ++ + F S +DI I L +
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 638 LTALRLKPVPQNKTLPEF---------YLGGNPFDCDCSMDWL-------PIINNNTSPS 681
L LR + K LP L P C +W PI N +
Sbjct: 225 LKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHCCAFANWRRQISELHPICNKSILRQ 283
Query: 682 MERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC--PYDIHCF 727
+ + + + S S + LC D+ C
Sbjct: 284 EVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCS 331
Score = 119 bits (300), Expect = 3e-29
Identities = 59/309 (19%), Positives = 97/309 (31%), Gaps = 70/309 (22%)
Query: 21 SVTCNLNYLGKGGGSNLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELK 77
C S ++ +P+DL +L T L I +F LE+++
Sbjct: 13 VFLCQ--------ESKVTEIPSDLPRNAIELRFV--LTKL--RVIQKGAFSGFGDLEKIE 60
Query: 78 ISNCKLVE-LPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
IS ++E + DVFS L L + I NL + P + L LQ L IS+
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-------YINPEAFQNLPNLQYLLISN 113
Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRI 195
+ IK + D L++ N + I
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDN--------------------------------INI 141
Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
+ N L L L N I +I +AF + +N+L L
Sbjct: 142 HTIERNSFVGLS--------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193
Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
P +F + + + L L++L +L T L+
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP----TLEKLVA 247
Query: 316 LIILNLSNN 324
L+ +L+
Sbjct: 248 LMEASLTYP 256
Score = 102 bits (255), Expect = 3e-23
Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 35/200 (17%)
Query: 744 CP-KNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
C + C C + V C E +++ +P +P +A + + I F G +
Sbjct: 2 CHHRICHC------SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGD 55
Query: 803 MLSLYVNNS--------------------------QIEVILNQTFNGLSSLQVLHLENNL 836
+ + ++ + + I + F L +LQ L + N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 837 ITHFYGYEFDNLEKLSELYLQEN-RIEYIANGTFNAL-ISLQVLQLDGNRLKSFRAFDLN 894
I H + + L +Q+N I I +F L +L L+ N ++ N
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175
Query: 895 TNSMLRKVYLGNNPFSCSCA 914
+ NN
Sbjct: 176 GTQLDELNLSDNNNLEELPN 195
Score = 79.9 bits (197), Expect = 7e-16
Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 10/152 (6%)
Query: 767 QISTVPPRIPMDAT---HVYLDGNTF-KTIPNHVFIG-RKNMLSLYVNNSQIEVILNQTF 821
I +P + + + + N TI + F+G + L++N + I+ I N F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
NG ++ +NN + F L + RI + + L L+
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST- 233
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
LK + L + L P C
Sbjct: 234 -YNLKKLPTLEKLVA--LMEASL-TYPSHCCA 261
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 147 bits (374), Expect = 4e-40
Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 31/229 (13%)
Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
Q L L + I +AF L ++ + +S + +L
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-----------------------VTLQ 69
Query: 278 ELSRGLFHKLEQLLVLDLSSN-HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF-K 335
+L F+ L ++ +++ + +L+ ID L L L + N L T
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127
Query: 336 DLVFLQRLDL-RNNSIGYIEDNAFLSLYN-LHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
L++ N + I NAF L N T+ L N + + FNG + +
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187
Query: 394 SNNLLVNIDSKAFKN-CSALKELDLSSNAIVEIPS-ALSELPFLKTLDL 440
N L ID AF S LD+S ++ +PS L L L +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 137 bits (346), Expect = 2e-36
Identities = 39/203 (19%), Positives = 82/203 (40%), Gaps = 9/203 (4%)
Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNN-SI 350
L L HL + I F L + + +S + L ++++ +F +L + +++RN ++
Sbjct: 36 LKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 351 GYIEDNAFLSLYNLHTIYLSENRIHHI-TAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKN 408
YI+ +A L L + + + + L ++ N + +I AF+
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153
Query: 409 -CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ-ISKIENGSFKNLQQ-LTDLRLV 465
C+ L L +N + L + L +N+ ++ I+ +F + + L +
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213
Query: 466 DNNIGNLSSGMLYELPSLEVLNL 488
++ L S L L L N
Sbjct: 214 QTSVTALPSKGLEHLKELIARNT 236
Score = 135 bits (341), Expect = 1e-35
Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 12/209 (5%)
Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDL-RNNSIGYIEDNAFLSLYNLHTIYLSENR- 373
L L L I + F +L + R+ + + ++ +E ++F +L + I + R
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNI-DSKAFKNCSALKELDLSSN-AIVEIPS-ALS 430
+ +I L +L L + N L D + L+++ N + IP A
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152
Query: 431 ELP-FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN-IGNLSSGMLYELPS-LEVLN 487
L TL L N + ++ +F + L + L N + + + S +L+
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211
Query: 488 LSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
+S+ + + E K L + +
Sbjct: 212 VSQTSVTALPSKGLEHLKEL---IARNTW 237
Score = 118 bits (297), Expect = 1e-29
Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 78/290 (26%)
Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN-SIRDIDTLGF 170
K + +P Q L + +++++I F +L NI + +S + +++ +++ F
Sbjct: 20 CKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76
Query: 171 AVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230
+ +++ + ++
Sbjct: 77 -----------------YNLSKVTHIEIRN------------------------TRNLTY 95
Query: 231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL 290
I P+A L L+ L I + L P+ + +
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTK-----------------------VYSTDIF 132
Query: 291 LVLDLSSN-HLSSNHIDETTFIGLIR-LIILNLSNNELTRIDAKTFKDLVFLQRLDL-RN 347
+L+++ N +++S I F GL + L L NN T + F L + L +N
Sbjct: 133 FILEITDNPYMTS--IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKN 189
Query: 348 NSIGYIEDNAFLSLYN-LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
+ I+ +AF +Y+ + +S+ + + + L +L N
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH---LKELIARNT 236
Score = 107 bits (268), Expect = 6e-26
Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 53/256 (20%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
S + LK+ L +P FS L N+ R+ ++ ++ + L S L ++ +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQ-----LESHSFYNLSKVTHI 85
Query: 132 NISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
I ++ + I D L
Sbjct: 86 EIRNTRNLTYIDPDALKELPL--------------------------------------- 106
Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSS-LRILNIS 248
L+ L + + L+ D + + L + +N ++ I NAF L + L +
Sbjct: 107 --LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164
Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL-VLDLSSNHLSSNHIDE 307
+N S+ F+ + + + L + + F + +LD+S +++ +
Sbjct: 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPS 222
Query: 308 TTFIGLIRLIILNLSN 323
L LI N
Sbjct: 223 KGLEHLKELIARNTWT 238
Score = 105 bits (263), Expect = 3e-25
Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 25/225 (11%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
C ++ ++ I IPS P +TL L E + I + +F NL ++ + + +
Sbjct: 10 CHQEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 469 -IGNLSSGMLYELPSLEVLNLSKNK-IHQIEIGTFEKNKRLAAIRLDSNFLTDINGV--F 524
+ L S Y L + + + + + I+ ++ L + + + L +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGN--------LKWLDIHGNYISSLNNYYEIKDGLS 576
L +++N + +P N L ++ N +S+ Y +G
Sbjct: 127 YSTDIFFILEITDNPYM----TSIPVNAFQGLCNETLTLKLYNNGFTSVQGY--AFNGTK 180
Query: 577 IKNLDASHNRILE-ISELS---IPNSVEVLFINNNLIKSVKPHTF 617
+ + + N+ L I + + + + +L ++ + ++
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Score = 104 bits (262), Expect = 4e-25
Identities = 42/284 (14%), Positives = 99/284 (34%), Gaps = 64/284 (22%)
Query: 71 YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
+ E+ +++ + +P S + + L + +L+ + + L +
Sbjct: 11 HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLR-------TIPSHAFSNLPNISR 59
Query: 131 LNISSSN-IKSISDDVFCSLANIQTLNLSRN-SIRDIDTLGFAVRRASAESNSGEKIECS 188
+ +S ++ + F +L+ + + + ++ ID
Sbjct: 60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL------------- 106
Query: 189 GGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSS-LRILN 246
L+ L + + L+ D + + L + +N ++ I NAF L + L
Sbjct: 107 ----LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN-HLSSNHI 305
+ +N S+ F+ +L + L+ N +L+ I
Sbjct: 163 LYNNGFTSVQGYAFNGT-------------------------KLDAVYLNKNKYLTV--I 195
Query: 306 DETTFIGLIRLI-ILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
D+ F G+ +L++S +T + +K + L+ L RN
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH---LKELIARNT 236
Score = 102 bits (257), Expect = 2e-24
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 60 SSITTKSFQNIYSLEELKIS-NCKLVELPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDL 117
+I + +F N+ ++ + +S + L +L F L + + I NTRNL +
Sbjct: 44 RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-------YI 96
Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFC-SLANIQTLNLSRNS-IRDIDTLGFAVRRA 175
P +L L L+ L I ++ +K D S L ++ N + I F
Sbjct: 97 DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ---- 152
Query: 176 SAESNSGEKIECSGGM--DLRILDLSHNKLRTLGDYSGITKFR--RLQNLHL-ENNEISQ 230
G+ + L L +N ++ Y+ F +L ++L +N ++
Sbjct: 153 --------------GLCNETLTLKLYNNGFTSVQGYA----FNGTKLDAVYLNKNKYLTV 194
Query: 231 IAPNAFVAL-SSLRILNISSNHLVSLPEGLFSS 262
I +AF + S +L++S + +LP
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
Score = 95.5 bits (238), Expect = 6e-22
Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 36/194 (18%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
C C +++ + + I +P +P + L +TIP+H F N+
Sbjct: 4 SSPPCECHQEED-----FRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNI 57
Query: 804 LSLYV--------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLI 837
+YV N + I L L+ L + N +
Sbjct: 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117
Query: 838 THF-YGYEFDNLEKLSELYLQEN-RIEYIANGTFNALIS-LQVLQLDGNRLKSFRAFDLN 894
F + + + L + +N + I F L + L+L N S + + N
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177
Query: 895 TNSMLRKVYLGNNP 908
+ L VYL N
Sbjct: 178 -GTKLDAVYLNKNK 190
Score = 86.6 bits (215), Expect = 7e-19
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 31/191 (16%)
Query: 726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
C C + + + + I + P +P + L
Sbjct: 4 SSPPCECHQEE-----------------------DFRVTCKDIQRI-PSLPPSTQTLKLI 39
Query: 786 GNTFKTIPNHVFIGRKNMLSLYVN-NSQIEVILNQTFNGLSSLQVLHLENN-LITHFYGY 843
+TIP+H F N+ +YV+ + ++ + + +F LS + + + N +T+
Sbjct: 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99
Query: 844 EFDNLEKLSELYLQENRIEYIANGTF-NALISLQVLQL-DGNRLKSF--RAFDLNTNSML 899
L L L + ++ + T + +L++ D + S AF +
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GLCNET 158
Query: 900 RKVYLGNNPFS 910
+ L NN F+
Sbjct: 159 LTLKLYNNGFT 169
Score = 66.2 bits (162), Expect = 5e-12
Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 32/171 (18%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVF-SGLRNLKRLTINTRNLQWDKSKKLDLV 118
+ I + + + L+ L I N L P L I + +
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-------YMTSI 146
Query: 119 P-GSLDGLR-ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN-SIRDIDTLGFAVRRA 175
P + GL E L + ++ S+ F + + + L++N + ID F
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAF----G 201
Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
S +LD+S + L L+ L N
Sbjct: 202 GVYSG------------PSLLDVSQTSVTALPSKG----LEHLKELIARNT 236
Score = 65.4 bits (160), Expect = 1e-11
Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 9/130 (6%)
Query: 766 QQISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIGRKNMLSL--YVNNSQIEVILNQT 820
+ ++ + P + + + K P+ + ++ + +N + I
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 821 FNGLSS-LQVLHLENNLITHFYGYEFDNLEKLSELYLQENR-IEYIANGTFNALIS-LQV 877
F GL + L L NN T GY F+ KL +YL +N+ + I F + S +
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209
Query: 878 LQLDGNRLKS 887
L + + +
Sbjct: 210 LDVSQTSVTA 219
Score = 55.8 bits (135), Expect = 2e-08
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 784 LDGNTFKTIPNHVFIGRKNML-SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
D +IP + F G N +L + N+ + FNG V +N +T
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
Query: 843 YEFDNL-EKLSELYLQENRIEYIANGTFNALISLQVL 878
F + S L + + + + + L L
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 35.8 bits (83), Expect = 0.064
Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 21/124 (16%)
Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGLS-IKNLDASHNRILEISELSIPNSV------- 599
+P + + L + ++ ++ + L I + S + L+ + +
Sbjct: 29 LPPSTQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQ----QLESHSFYNLSKV 82
Query: 600 EVLFI-NNNLIKSVKPHTFFDKSNLARVDIYANDITKL-DLTALRLKPVPQNKTLPEFYL 657
+ I N + + P + L + I+ + DLT + +
Sbjct: 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD-----IFFILEI 137
Query: 658 GGNP 661
NP
Sbjct: 138 TDNP 141
Score = 33.8 bits (78), Expect = 0.28
Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAND-ITKL 636
++ + I I S+P S + L + ++++ H F + N++R+ + + + +L
Sbjct: 14 EDFRVTCKDIQRIP--SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 637 D 637
+
Sbjct: 72 E 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 142 bits (360), Expect = 7e-38
Identities = 61/234 (26%), Positives = 96/234 (41%), Gaps = 32/234 (13%)
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
C+ +D S KL + S I + L L++N++S + AF L+ LR+L
Sbjct: 14 CNNN--KNSVDCSSKKLTAIP--SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67
Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
++ N L +LP G+F +L+ L L ++ N L + +
Sbjct: 68 LNDNKLQTLPA------------------------GIFKELKNLETLWVTDNKLQA--LP 101
Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
F L+ L L L N+L + + F L L L L N + + F L +L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
+ L N++ + F+ L L L L NN L + AF + LK L L N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 140 bits (355), Expect = 4e-37
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 225 NNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF 284
N + + ++ ++ SS L ++P + + D ++ Q N L L F
Sbjct: 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAF 57
Query: 285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLD 344
H+L +L +L L+ N L + + F L L L +++N+L + F LV L L
Sbjct: 58 HRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
L N + + F SL L + L N + + +F+ L L +L L NN L +
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
AF L LKTL L NQ+ ++ G+F +L++L L+L
Sbjct: 176 AFDK-----------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 465 VDN 467
+N
Sbjct: 213 QEN 215
Score = 129 bits (326), Expect = 3e-33
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CSC N N N VDCS ++++ +P IP D + L N ++P+ F +
Sbjct: 8 DGGVCSC----NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKL 63
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
LY+N+++++ + F L +L+ L + +N + FD L L+EL L N+++
Sbjct: 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 864 IANGTFNALISLQVLQLDGNRLKS-----FR---------------------AFD----- 892
+ F++L L L L N L+S F AFD
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 893 ----LNTNSM-------------LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
L+ N + L+ + L NP+ C+C + + W+ +++ G+D
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVD 243
Score = 128 bits (323), Expect = 7e-33
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382
N L + D +D + + I N L L N++ + + F
Sbjct: 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAF 57
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLG 441
+ L L L L++N L + + FK L+ L ++ N + +P +L L L L
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 442 ENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
NQ+ + F +L +LT L L N + +L G+ +L SL+ L L N++ ++ G F
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 502 EKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
+K L ++LD+N L + G F L +L L L EN
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 110 bits (278), Expect = 6e-27
Identities = 72/306 (23%), Positives = 116/306 (37%), Gaps = 83/306 (27%)
Query: 409 CS-ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
C+ +D SS + IPS + K LDL N++S + + +F L +L L L DN
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
+ L +G+ EL +LE L ++ NK+ + IG F++ LA +RLD N L + VF
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 527 LAQLLWLNLSENHLVWFDYAMVP-------GNLKWLDIHGNYISSLNNYYEIKDGLSIKN 579
L +L +L+L N L +P +LK L ++ N + + D L+
Sbjct: 132 LTKLTYLSLGYNEL-----QSLPKGVFDKLTSLKELRLYNNQLKRVPE--GAFDKLT--- 181
Query: 580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLT 639
++ L ++NN +K V P FD
Sbjct: 182 ------------------ELKTLKLDNNQLKRV-PEGAFDS------------------- 203
Query: 640 ALRLKPVPQNKTLPEFYLGGNPFDCDCSM-----DWLPIINNNTSPSMERQYPKIMDLDN 694
+ L L NP+DC C+ W + + +D
Sbjct: 204 ---------LEKLKMLQLQENPWDCTCNGIIYMAKW---LKKKADEGLG-------GVDT 244
Query: 695 VVCKMT 700
C+
Sbjct: 245 AGCEKG 250
Score = 105 bits (263), Expect = 7e-25
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 75/258 (29%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
K+LT +T+ L +K L + L +L++L ++ + ++++ +F L
Sbjct: 26 KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
N++TL ++ N ++ + G +
Sbjct: 86 NLETLWVTDNKLQALPI---------------------------------------GVFD 106
Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
+ L L L+ N++ + P F +L+ L L++ N L SLP+
Sbjct: 107 QLVN---LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK------------- 150
Query: 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID 330
G+F KL L L L +N L + E F L L L L NN+L R+
Sbjct: 151 -----------GVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 331 AKTFKDLVFLQRLDLRNN 348
F L L+ L L+ N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215
Score = 95.8 bits (239), Expect = 9e-22
Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 49/215 (22%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
SS+ +K+F + L L +++ KL LP +F L+NL+ L + LQ L
Sbjct: 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-------ALPI 102
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
G D L L L + + +KS+ VF SL + L+L N ++ + F
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--------- 153
Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
K L+ L L NN++ ++ AF L
Sbjct: 154 ---------------------------------DKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN 274
+ L+ L + +N L +PEG F S + + Q+N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 64.6 bits (158), Expect = 3e-11
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
S+ + F ++ L L + +L LP VF L +LK L + L+ +
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-------VPE 174
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL-GFAVRR 174
G+ D L EL+ L + ++ +K + + F SL ++ L L N + I + + ++
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234
Query: 175 ASAESNSGEKIECSGG 190
A + C G
Sbjct: 235 ADEGLGGVDTAGCEKG 250
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 144 bits (364), Expect = 2e-37
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 40/250 (16%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI-PNHVFIGRK 801
+CP NC C +N++ CS+QQ+ VP +P + L N +
Sbjct: 11 SCPANCLC------ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLT 64
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
N+ SL ++++ + I ++ F + +L+ L L +N + + F +L+ L L L N I
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSF--RAF------------DLNTNSM--------- 898
+ F + LQ L L N++ F DL++N +
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 899 ------LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD-ISCVIDESSPPIRKEI 951
+YL NNP C C Q W + V D + + C+ S +
Sbjct: 185 KLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM---HSKKLHNIF 241
Query: 952 DLNSTTCTEY 961
L+ C+EY
Sbjct: 242 SLDFFNCSEY 251
Score = 129 bits (326), Expect = 2e-32
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 11/217 (5%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
+LDLS N+LS E T L L L LS+N L I ++ F + L+ LDL +N +
Sbjct: 43 LLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS- 410
+++ F L L + L N I + + F + L KL LS N + + K+ +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 411 --ALKELDLSSNAIVEIP-SALSELPFLK--TLDLGENQI----SKIENGSFKNLQQLTD 461
L LDLSSN + ++P + L +LP L L N + + S +QL+
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSS 221
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498
+ ++ + S L+ + SL+ N S+ K E
Sbjct: 222 VMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEA 258
Score = 126 bits (319), Expect = 1e-31
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
+LDLSHN L L T+ L +L L +N ++ I+ AFV + +LR L++SSNH
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L +L E LF L+ L VL L +NH+ +D F
Sbjct: 100 LHTLDE------------------------FLFSDLQALEVLLLYNNHIVV--VDRNAFE 133
Query: 312 GLIRLIILNLSNNELTRIDAKTFKD---LVFLQRLDLRNNSIGYIEDNAFLSLYNL--HT 366
+ +L L LS N+++R + KD L L LDL +N + + L +
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN-----IDSKAFKNCSALKELDLSSNA 421
+YL N + L+ LS+ + + SK N +L + S
Sbjct: 194 LYLHNNPL-ECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252
Query: 422 IVEIPSAL 429
+ L
Sbjct: 253 ESAWEAHL 260
Score = 126 bits (317), Expect = 2e-31
Identities = 50/188 (26%), Positives = 71/188 (37%), Gaps = 32/188 (17%)
Query: 215 FRRLQNLHLENNEISQIAPN-AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
L L +N +S++ L++L L +S NHL + F
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV------------ 85
Query: 274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT 333
+ L LDLSSNHL + +DE F L L +L L NN + +D
Sbjct: 86 ------------PVPNLRYLDLSSNHLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRNA 131
Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFL---SLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390
F+D+ LQ+L L N I L L + LS N++ + L K
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Query: 391 --LTLSNN 396
L L NN
Sbjct: 192 NGLYLHNN 199
Score = 114 bits (288), Expect = 2e-27
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 10/159 (6%)
Query: 412 LKELDLSSNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
LDLS N + + + + L L +L L N ++ I + +F + L L L N++
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVF---T 525
L + +L +LEVL L N I ++ FE +L + L N ++ +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 526 YLAQLLWLNLSENHLVWFDYAMVPG----NLKWLDIHGN 560
L +L+ L+LS N L + L +H N
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 112 bits (282), Expect = 9e-27
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE-NGSFKNLQQLTDLRLVDN 467
C++ L S + +P +L + LDL N +S++ + L L L L N
Sbjct: 18 CAS-NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
++ +SS +P+L L+LS N +H ++ F + L + L +N + + F
Sbjct: 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Query: 527 LAQLLWLNLSENHLVW-----FDYAMVPGNLKWLDIHGNYISSL 565
+AQL L LS+N + L LD+ N + L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 89.1 bits (221), Expect = 7e-19
Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 36/199 (18%)
Query: 36 NLSFVPTDLITKLNIDCDATVL-LDS-SITT----KSFQNIYSLEELKISNCKLVELPVD 89
L VP ++ +L L +++ + + +L L +S+ L + +
Sbjct: 29 QLPNVPQ------SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 90 VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSL 149
F + NL+ L +++ +L L L+ L+VL + +++I + + F +
Sbjct: 83 AFVPVPNLRYLDLSSNHLH-------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL--G 207
A +Q L LS+N I + L +LDLS NKL+ L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPK--------------LMLLDLSSNKLKKLPLT 181
Query: 208 DYSGITKFRRLQNLHLENN 226
D + + + L+L NN
Sbjct: 182 DLQKLPAWVK-NGLYLHNN 199
Score = 88.4 bits (219), Expect = 1e-18
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 481 PSLEVLNLSKNKIHQIEIGT-FEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSEN 538
+L+LS N + ++ + L ++ L N L I+ F + L +L+LS N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 539 HLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
HL D + L+ L ++ N+I ++ + ++
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMA-------------------- 136
Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLAR---VDIYANDITKLDLTALRLKPVPQNKTLP 653
++ L+++ N I D + L + +D+ +N + KL LT L+ P L
Sbjct: 137 -QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL- 194
Query: 654 EFYLGGNPFDCDCSMDWL 671
YL NP +CDC + L
Sbjct: 195 --YLHNNPLECDCKLYQL 210
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 148 bits (374), Expect = 6e-37
Identities = 70/367 (19%), Positives = 124/367 (33%), Gaps = 63/367 (17%)
Query: 147 CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL 206
C LN+ + + + + L + N L +L
Sbjct: 37 CLNNGNAVLNVGESGLTTLPD--------------------CLPAHITTLVIPDNNLTSL 76
Query: 207 GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDI 266
L+ L + N+++ + P L L I + HL +LP GL
Sbjct: 77 PAL-----PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGL------- 123
Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL 326
+++ N L L L L +S N L+S + L L NN+L
Sbjct: 124 CKLWIFGNQLTSLPVL----PPGLQELSVSDNQLAS--LPA----LPSELCKLWAYNNQL 173
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
T + LQ L + +N + + L+ ++ NR+ + A
Sbjct: 174 TSLPM----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPALPSG--- 222
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
L +L +S N L ++ S LKEL +S N + +P L +L + NQ++
Sbjct: 223 -LKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLT 274
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
++ S +L T + L N + + L E+ S + + + +
Sbjct: 275 RLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333
Query: 507 LAAIRLD 513
L D
Sbjct: 334 LHLAAAD 340
Score = 144 bits (364), Expect = 1e-35
Identities = 71/391 (18%), Positives = 127/391 (32%), Gaps = 65/391 (16%)
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
VLN+ S + ++ D + A+I TL + N++ + L
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPP-------------- 81
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
+LR L++S N+L +L L + + S L
Sbjct: 82 -------ELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPAL-------PSGLCK 125
Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
L I N L SLP + E+ N L L +L L +N L+S
Sbjct: 126 LWIFGNQLTSLPVLPPG----LQELSVSDNQLASLPALP----SELCKLWAYNNQLTS-- 175
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
+ L L++S+N+L + L +L NN + + L
Sbjct: 176 LPML----PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGL 223
Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
+ +S NR+ + L +L +S N L ++ S L L + N +
Sbjct: 224 KELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR 275
Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
+P +L L T++L N +S+ + + + + E +L
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335
Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ + + G R + N
Sbjct: 336 --LAAADWLVPAREGEPAPADRWHMFGQEDN 364
Score = 134 bits (338), Expect = 2e-32
Identities = 69/408 (16%), Positives = 135/408 (33%), Gaps = 92/408 (22%)
Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL-SSLRILNISSNHLVSLPEGLFSS 262
+Y + R E+ + + L + +LN+ + L +LP+ L +
Sbjct: 3 VDPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH 62
Query: 263 CRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLS 322
I+ + N+L L +L L++S N L+S + GL+ L I +
Sbjct: 63 ---ITTLVIPDNNLTSLPALP----PELRTLEVSGNQLTS--LPVL-PPGLLELSIFSNP 112
Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382
L + L +L + N + + L + +S+N++ + A
Sbjct: 113 LTHLPAL-------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPS 161
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGE 442
L KL NN L ++ S L+EL +S N + +P+ SEL L
Sbjct: 162 E----LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTLPSEL---YKLWAYN 210
Query: 443 NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFE 502
N+++ + L +L + N + +L L+ L +S N++
Sbjct: 211 NRLTSLPA----LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRL--------- 253
Query: 503 KNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYI 562
T L L L L ++ N +
Sbjct: 254 ----------------------TSLPMLP------------------SGLLSLSVYRNQL 273
Query: 563 SSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
+ L + S ++ N + E + ++ + +I+
Sbjct: 274 TRLPE--SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319
Score = 87.3 bits (216), Expect = 1e-17
Identities = 53/320 (16%), Positives = 113/320 (35%), Gaps = 39/320 (12%)
Query: 36 NLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLR 95
+L +P+ L KL I + L L+EL +S+ +L LP +
Sbjct: 115 HLPALPSGL-CKLWIFGNQLTSLPVLPP--------GLQELSVSDNQLASLP----ALPS 161
Query: 96 NLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTL 155
L +L N Q L +P GL+E L++S + + S+ + + L
Sbjct: 162 ELCKLWAY--NNQ------LTSLPMLPSGLQE---LSVSDNQLASLPT----LPSELYKL 206
Query: 156 NLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF 215
N + + L ++ N + +L+ L +S N+L +L
Sbjct: 207 WAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS-ELKELMVSGNRLTSLPMLPS---- 261
Query: 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
L +L + N+++++ P + + LSS +N+ N L + R+I+
Sbjct: 262 -GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERT---LQALREITSAPGYSGP 316
Query: 276 LVELSRGLFHKLEQLLVLDLSS-NHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF 334
++ + L L++ + L E + + + + +
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376
Query: 335 KDLVFLQRLDLRNNSIGYIE 354
+ F++ + ++
Sbjct: 377 ETENFIKDAGFKAQISSWLA 396
Score = 63.4 bits (154), Expect = 4e-10
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 23/166 (13%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
V++ E ++T+P +P T + + N ++P + +L V+ +Q+
Sbjct: 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQLT-S 95
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
L GL L + + L +L++ N++ + LQ
Sbjct: 96 LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTSLPVL----PPGLQ 144
Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC---SCATLQEL 919
L + N+L S S L K++ NN + + LQEL
Sbjct: 145 ELSVSDNQLASL----PALPSELCKLWAYNNQLTSLPMLPSGLQEL 186
Score = 55.7 bits (134), Expect = 8e-08
Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 14/167 (8%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
S+ Q++++P + ++ N ++P + L V+ +++ +
Sbjct: 187 SVSDNQLASLPTLPS-ELYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTSL----P 237
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
S L+ L + N +T L L + N++ + + L S + L+
Sbjct: 238 VLPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPESLIH-LSSETTVNLE 292
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSN 928
GN L L + F + A+ + +
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339
Score = 54.5 bits (131), Expect = 2e-07
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 24/161 (14%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
Q++++P P + + N ++P + L+ N+Q+ +
Sbjct: 127 WIFGNQLTSLPVLPP-GLQELSVSDNQLASLPALP----SELCKLWAYNNQLTSLPML-- 179
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
S LQ L + +N + +L +L+ NR+ + L+ L +
Sbjct: 180 --PSGLQELSVSDNQLASL----PTLPSELYKLWAYNNRLTSLPAL----PSGLKELIVS 229
Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFS---CSCATLQEL 919
GNRL S S L+++ + N + + L L
Sbjct: 230 GNRLTSLPVL----PSELKELMVSGNRLTSLPMLPSGLLSL 266
Score = 39.9 bits (93), Expect = 0.006
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
S +++++P + + + GN ++P +LSL V +Q+ L ++
Sbjct: 227 IVSGNRLTSLPVLPS-ELKELMVSGNRLTSLPML--PS--GLLSLSVYRNQLTR-LPESL 280
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
LSS ++LE N ++ + R + +L + D
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 132 bits (333), Expect = 5e-35
Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 10/198 (5%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + V+C Q ++VP IP T++ L+ N+ K++PN VF ++
Sbjct: 1 CPSRCSC------SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSL 54
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
LY+ ++++ + N FN L+SL L+L N + FD L +L EL L N+++
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
+ +G F+ L L+ L+L N+LKS FD T+ L+ ++L +NP+ C+C ++ L
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSE 172
Query: 922 WIIDNSNKVKDGLDISCV 939
WI +S V++
Sbjct: 173 WINKHSGVVRNSAGSVAP 190
Score = 86.7 bits (215), Expect = 3e-19
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
L LE N + + F L+SL L + N L SLP G+F+ ++ + N L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
L G+F KL QL L L++N L S + + F L +L L L N+L + F L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 339 FLQRLDLRNN 348
LQ + L +N
Sbjct: 149 SLQYIWLHDN 158
Score = 77.0 bits (190), Expect = 7e-16
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
LDL NS+ + + F L +L +YL N++ + +FN L L+ L LS N L +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
+ + F + LKEL L++N + +P +L LK L L +NQ+ + +G F L L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 460 TDLRLVDN 467
+ L DN
Sbjct: 151 QYIWLHDN 158
Score = 72.8 bits (179), Expect = 2e-14
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
CS ++ S +P+ + LDL N + + NG F L LT L L N
Sbjct: 7 CSG-TTVECYSQGRTSVPTGIPAQ--TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK 63
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYL 527
+ +L +G+ +L SL LNLS N++ + G F+K +L + L++N L + +GVF L
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123
Query: 528 AQLLWLNLSENHL 540
QL L L +N L
Sbjct: 124 TQLKDLRLYQNQL 136
Score = 72.4 bits (178), Expect = 2e-14
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
LDL +N L S + F L L L L N+L + F L L L+L N +
Sbjct: 32 YLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
+ + F L L + L+ N++ + +F+ L L L L N L ++ F ++
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 412 LKELDLSSN 420
L+ + L N
Sbjct: 150 LQYIWLHDN 158
Score = 70.9 bits (174), Expect = 7e-14
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
LDL +N++ +P+ EL L L LG N++ + NG F L LT L L N + +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
L +G+ +L L+ L L+ N++ + G F+K +L +RL N L + +GVF L L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 531 LWLNLSEN 538
++ L +N
Sbjct: 151 QYIWLHDN 158
Score = 70.9 bits (174), Expect = 7e-14
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
LDL N L++L + + L L+L N++ + F L+SL LN+S+N
Sbjct: 29 QTTYLDLETNSLKSLPN-GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L SLP G+F + E+ N L L G+F KL QL L L N L S + + F
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFD 145
Query: 312 GLIRLIILNLSNN 324
L L + L +N
Sbjct: 146 RLTSLQYIWLHDN 158
Score = 54.7 bits (132), Expect = 3e-08
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 42/172 (24%)
Query: 103 NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
T L + + L G D L L L + + ++S+ + VF L ++ LNLS N +
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLH 222
+ + + D K +L+ L
Sbjct: 89 QSLPN--------------------------GVFD----------------KLTQLKELA 106
Query: 223 LENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN 274
L N++ + F L+ L+ L + N L S+P+G+F + I+ N
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 54.7 bits (132), Expect = 3e-08
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 16 SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEE 75
S + +V C +G S + +P T L+++ ++ S+ F + SL +
Sbjct: 6 SCSGTTVECY----SQGRTSVPTGIPAQT-TYLDLETNSL----KSLPNGVFDELTSLTQ 56
Query: 76 LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
L + KL LP VF+ L +L L ++T LQ L G D L +L+ L +++
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-------SLPNGVFDKLTQLKELALNT 109
Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
+ ++S+ D VF L ++ L L +N ++ +
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 54.3 bits (131), Expect = 4e-08
Identities = 52/235 (22%), Positives = 76/235 (32%), Gaps = 85/235 (36%)
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVW 542
L+L N + + G F++ L + L N L + NGVF L L +LNLS N L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 543 FDYAMVPG------NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
++ G LK L ++ N + SL
Sbjct: 90 ---SLPNGVFDKLTQLKELALNTNQLQSL------------------------------- 115
Query: 597 NSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQN-----K 650
P FDK + L L L +LK VP
Sbjct: 116 -----------------PDGVFDKLTQL----------KDLRLYQNQLKSVPDGVFDRLT 148
Query: 651 TLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKIMDLDNVVCKMT 700
+L +L NP+DC C +W IN + + R + D+ C +
Sbjct: 149 SLQYIWLHDNPWDCTCPGIRYLSEW---INKH--SGVVRNSAGSVAPDSAKCSGS 198
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 134 bits (338), Expect = 1e-34
Identities = 57/255 (22%), Positives = 106/255 (41%), Gaps = 19/255 (7%)
Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL 326
SE + ++ + + +L ++ D T L + + +N+++
Sbjct: 5 SETITVPTPIKQIF--SDDAFAETIKDNLKKKSVT----DAVTQNELNSIDQIIANNSDI 58
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
+ + L + +L L N + I+ +L NL ++L EN++ +++ L
Sbjct: 59 KSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLK 112
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
L L+L +N + +I+ + L+ L L +N I +I + LS L L TL L +NQIS
Sbjct: 113 KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 169
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
I L +L +L L N+I +L + L L +L+VL L + I
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVV 225
Query: 507 LAAIRLDSNFLTDIN 521
++ L
Sbjct: 226 PNTVKNTDGSLVTPE 240
Score = 131 bits (332), Expect = 6e-34
Identities = 61/297 (20%), Positives = 108/297 (36%), Gaps = 21/297 (7%)
Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
I QI + A + N+ + + I +I A + + +
Sbjct: 6 ETITVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV 61
Query: 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF 339
L + L L+ N L+ D L L L L N++ + + KDL
Sbjct: 62 QG--IQYLPNVTKLFLNGNKLT----DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKK 113
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L+ L L +N I I + L L ++YL N+I IT + L L L+L +N +
Sbjct: 114 LKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
+I + L+ L LS N I ++ AL+ L L L+L + NL
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
++ D ++ + + E N+ + +F + + + + F
Sbjct: 227 NTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281
Score = 128 bits (323), Expect = 9e-33
Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 19/271 (7%)
Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
I I + + L + + N L + ++ +N+ + ++
Sbjct: 9 TVPTPIKQIFSDDAFA--ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-- 62
Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
+ + +L L+ N + +I L+ L L L L EN++ + + K+L++L L L
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119
Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
N I +++ L LP LE L L NKI I + +L + L+ N ++DI
Sbjct: 120 EHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-L 174
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYE--IKDGLSIKNLDA 582
L +L L LS+NH+ NL L++ + ++ + ++KN D
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234
Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSVK 613
S ++ +S E + +L +
Sbjct: 235 S---LVTPEIISDDGDYEKPNVKWHLPEFTN 262
Score = 117 bits (294), Expect = 7e-29
Identities = 51/305 (16%), Positives = 102/305 (33%), Gaps = 36/305 (11%)
Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
D E N+ ++ L +I + + + I+ + + +
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN-------- 69
Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
+ L L+ NKL D + + L L L+ N++ ++ L
Sbjct: 70 -----------VTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKK 113
Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
L+ L++ N + + + +Y N + +++ +L +L L L N +S
Sbjct: 114 LKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169
Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSL 361
D GL +L L LS N ++ + A L L L+L + N +L
Sbjct: 170 ----DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223
Query: 362 YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA 421
+T+ ++ + +G Y + N S F + + +
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283
Query: 422 IVEIP 426
V P
Sbjct: 284 RVTQP 288
Score = 114 bits (288), Expect = 5e-28
Identities = 45/263 (17%), Positives = 100/263 (38%), Gaps = 37/263 (14%)
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
+ S+ + I S + + +L ++ + +EL + + + I
Sbjct: 3 LGSETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIK 59
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
++ + L +T L L N + ++ L L +L L L +NK+ + + + K+
Sbjct: 60 SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKK 113
Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
L ++ L+ N ++DING L L L+ L + N I+ +
Sbjct: 114 LKSLSLEHNGISDING----LVHL-------------------PQLESLYLGNNKITDIT 150
Query: 567 NYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
+ + L N+I +I L+ ++ L+++ N I ++ NL +
Sbjct: 151 V---LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205
Query: 627 DIYANDITKLDLTALRLKPVPQN 649
++++ + + VP
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNT 228
Score = 65.1 bits (159), Expect = 3e-11
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 13/179 (7%)
Query: 760 VVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
+ + +++ + P + ++LD N K + + K + SL + ++ I I
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-- 127
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
L L+ L+L NN IT L KL L L++N+I I L LQ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183
Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIS 937
L N + RA N L + L + C + ++ N+ K DG ++
Sbjct: 184 YLSKNHISDLRALAGLKN--LDVLELFSQE--CLNKPINHQSNLVVPNTVKNTDGSLVT 238
Score = 64.3 bits (157), Expect = 6e-11
Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 14/174 (8%)
Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
+ ++ ++ + +++ + + + K++ N+ L++N +++ I
Sbjct: 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-- 85
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L +L L L+ N + +L+KL L L+ N I I L L+ L L
Sbjct: 86 LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 141
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQELQTWIIDNSNKVKD 932
N++ T L + L +N S A L +LQ + N + D
Sbjct: 142 GNNKITDITVLSRLTK--LDTLSLEDNQISDIVPLAGLTKLQNLYLSK-NHISD 192
Score = 55.4 bits (134), Expect = 4e-08
Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 34/192 (17%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
S +++ L+ L + + + ++ + L L+ L + + D+ L
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-------DITV--LSR 154
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
L +L L++ + I I L +Q L LS+N I D+ L
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRAL---------------- 196
Query: 185 IECSGGMDLRILDLSHNKLRTLGDY--SGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
+G +L +L+L + S + ++N I+ + ++
Sbjct: 197 ---AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253
Query: 243 RILNISSNHLVS 254
+ + VS
Sbjct: 254 KWHLPEFTNEVS 265
Score = 50.8 bits (122), Expect = 1e-06
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
+ I+ I + + + +L+ +T + L + ++ + I+ +
Sbjct: 7 TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 62
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS-----CSCATLQEL 919
L ++ L L+GN+L + N L ++L N L+ L
Sbjct: 63 G--IQYLPNVTKLFLNGNKLTDIKPLANLKN--LGWLFLDENKVKDLSSLKDLKKLKSL 117
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 134 bits (339), Expect = 1e-34
Identities = 65/326 (19%), Positives = 116/326 (35%), Gaps = 63/326 (19%)
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
L I + + +T T DL + L + IE L NL + L +
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKD 72
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
N+I + KN + + EL+LS N + + SA++
Sbjct: 73 NQITDLAP--------------------------LKNLTKITELELSGNPLKNV-SAIAG 105
Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
L +KTLDL QI+ + L L L L N I N+S L L +L+ L++
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161
Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN 551
++ + +L ++ D N ++DI+ LA L N
Sbjct: 162 QVSDLT--PLANLSKLTTLKADDNKISDISP----LASLP-------------------N 196
Query: 552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS 611
L + + N IS ++ + + ++ + ++ I N V +
Sbjct: 197 LIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
Query: 612 VKPHTFFDKSNLARVDIYANDITKLD 637
+ P T D A ++ N + ++
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFIN 279
Score = 130 bits (329), Expect = 2e-33
Identities = 50/309 (16%), Positives = 108/309 (34%), Gaps = 21/309 (6%)
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS 267
+ + ++ L + L+ + ++ ++
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLI 66
Query: 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
+ + N + +L+ L ++ L+LS N L + + GL + L+L++ ++T
Sbjct: 67 GLELKDNQITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQIT 120
Query: 328 RIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
+ L LQ L L N I I L NL + + ++ +T L
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
L+ L +N + +I + L E+ L +N I ++ S L+ L + L I+
Sbjct: 175 LTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITN 231
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
NL ++ + ++ + + + NL+ N I ++ N+ +
Sbjct: 232 QPVFYNNNLVVPNVVK--GPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSV 289
Query: 508 AAIRLDSNF 516
F
Sbjct: 290 TFKNTTVPF 298
Score = 119 bits (299), Expect = 2e-29
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 37/262 (14%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
K+ + + + + + + L + I + L L L+L +NQI+
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD 77
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
+ KNL ++T+L L N + N+S+ + L S++ L+L+ +I + L
Sbjct: 78 LAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNL 131
Query: 508 AAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
+ LD N +T+I+ LA L NL++L I +S L
Sbjct: 132 QVLYLDLNQITNISP----LAGLT-------------------NLQYLSIGNAQVSDLTP 168
Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVD 627
+ + + L A N+I +IS L+ ++ + + NN I V P + SNL V
Sbjct: 169 ---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223
Query: 628 IYANDITKLDLTALRLKPVPQN 649
+ IT + VP
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNV 245
Score = 115 bits (291), Expect = 3e-28
Identities = 61/335 (18%), Positives = 116/335 (34%), Gaps = 45/335 (13%)
Query: 92 SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN 151
L N ++ N+ D V L + L+ + + +I L N
Sbjct: 16 PALANAIKIAAGKSNVT-------DTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNN 64
Query: 152 IQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSG 211
+ L L N I D+ L + + L+LS N L+ + S
Sbjct: 65 LIGLELKDNQITDLAPLKNLTK-------------------ITELELSGNPLKNV---SA 102
Query: 212 ITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA 271
I + ++ L L + +I+ + P LS+L++L + N + ++ + ++ +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA 331
+ +L+ L +L L N +S D + L LI ++L NN+++ +
Sbjct: 159 GNAQVSDLT--PLANLSKLTTLKADDNKIS----DISPLASLPNLIEVHLKNNQISDVSP 212
Query: 332 KTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL 391
+ L + L N +I +L + + NG Y L
Sbjct: 213 --LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
T + +N S F K + + V P
Sbjct: 271 TWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQP 305
Score = 105 bits (263), Expect = 1e-24
Identities = 39/245 (15%), Positives = 90/245 (36%), Gaps = 20/245 (8%)
Query: 417 LSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
AI I L + G++ ++ + +L +T L + +
Sbjct: 4 TQPTAINVI-FPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG-- 58
Query: 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLS 536
+ L +L L L N+I + + ++ + L N L +++ L + L+L+
Sbjct: 59 VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLT 115
Query: 537 ENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
+ NL+ L + N I++++ + +++ L + ++ +++ L+
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANL 172
Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656
+ + L ++N I + P NL V + N I+ + P+ L
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-------PLANTSNLFIVT 223
Query: 657 LGGNP 661
L
Sbjct: 224 LTNQT 228
Score = 66.3 bits (162), Expect = 1e-11
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 761 VDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQ 819
++ + QI+ + P + T + L GN K + G +++ +L + ++QI +
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--T 123
Query: 820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQ 879
GLS+LQVL+L+ N IT+ L L L + ++ + L L L+
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179
Query: 880 LDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
D N++ N L +V+L NN S
Sbjct: 180 ADDNKISDISPLASLPN--LIEVHLKNNQIS 208
Score = 59.3 bits (144), Expect = 3e-09
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 11/134 (8%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
N + + S + T L + L +T G L L L L++N+
Sbjct: 19 ANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQE 918
I +A L + L+L GN LK+ A + ++ + L + + A L
Sbjct: 75 ITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQS--IKTLDLTSTQITDVTPLAGLSN 130
Query: 919 LQTWIIDNSNKVKD 932
LQ +D N++ +
Sbjct: 131 LQVLYLDL-NQITN 143
Score = 44.3 bits (105), Expect = 2e-04
Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 57/197 (28%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
+ +L+ L I N ++ +L L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLT---------------------------------PLAN 171
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
L +L L + I IS SL N+ ++L N I D+ L
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL---------------- 213
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
+ +L I+ L++ + + + ++ + IAP +
Sbjct: 214 ---ANTSNLFIVTLTNQTITNQPVFYNNNL---VVPNVVKGPSGAPIAPATISDNGTYAS 267
Query: 245 LNISSNHLVSLPEGLFS 261
N++ N + ++
Sbjct: 268 PNLTWNLTSFINNVSYT 284
Score = 35.4 bits (82), Expect = 0.12
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
Q+S + P + T + D N I N++ +++ N+QI +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SP 212
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
S+L ++ L N IT+ + +NL + ++ IA T + + L
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNL--VVPNVVKGPSGAPIAPATISDNGTYASPNL 270
Query: 881 DGNRLKS 887
N
Sbjct: 271 TWNLTSF 277
Score = 35.0 bits (81), Expect = 0.15
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905
L ++ ++ + T L + L G + + N L + L
Sbjct: 16 PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNN--LIGLELK 71
Query: 906 NN 907
+N
Sbjct: 72 DN 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 133 bits (336), Expect = 2e-34
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 7/207 (3%)
Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
+ ++ ++ + + L +LSEN ++ + L++L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLN 61
Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452
L L + L LDLS N + +P LP L LD+ N+++ + G+
Sbjct: 62 LDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
+ L +L +L L N + L G+L P LE L+L+ N + ++ G + L + L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 513 DSNFLTDI-NGVFTYLAQLLWLNLSEN 538
N L I G F L + L N
Sbjct: 180 QENSLYTIPKGFFG-SHLLPFAFLHGN 205
Score = 132 bits (333), Expect = 5e-34
Identities = 53/235 (22%), Positives = 77/235 (32%), Gaps = 34/235 (14%)
Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
E S ++ L L + + LHL N + + + + L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALP--PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
N+ L L + L L LDLS N L S +
Sbjct: 61 NLDRAELTKLQ--------------------------VDGTLPVLGTLDLSHNQLQS--L 92
Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
L L +L++S N LT + + L LQ L L+ N + + L
Sbjct: 93 P-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
+ L+ N + + A L NGL L L L N L I F + L L N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGN 205
Score = 126 bits (319), Expect = 3e-32
Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 57/250 (22%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
C + + V+C ++ ++ +PP +P D T ++L N T + +
Sbjct: 4 CEVSKVA------SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRL 57
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
L ++ +++ + Q L L L L +N + L L+ L + NR+
Sbjct: 58 TQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTS 114
Query: 864 IANGTFNALISLQVLQLDGNRLKS-----FR---------------------AFD----- 892
+ G L LQ L L GN LK+ +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 893 ----LNTNSM------------LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI 936
L NS+ L +L NP+ C+C + + W+ DN+ V
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC-EILYFRRWLQDNAENVYVWKQG 233
Query: 937 SCVIDESSPP 946
V +S
Sbjct: 234 VDVKAMTSNV 243
Score = 122 bits (307), Expect = 1e-30
Identities = 50/238 (21%), Positives = 81/238 (34%), Gaps = 52/238 (21%)
Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
+ L +P L ++ +L++S + + + S + LNL R + + G
Sbjct: 19 KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL-GDYSGITKFRRLQNLHLENNEISQ 230
L LDLSHN+L++L + L L + N ++
Sbjct: 77 PV-------------------LGTLDLSHNQLQSLPLLGQTLPA---LTVLDVSFNRLTS 114
Query: 231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL 290
+ A L L+ L + N L +LP GL + +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLT------------------------PTPKL 150
Query: 291 LVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
L L++N+L+ + GL L L L N L I F L L N
Sbjct: 151 EKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 111 bits (280), Expect = 4e-27
Identities = 50/274 (18%), Positives = 89/274 (32%), Gaps = 71/274 (25%)
Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
++ E++ + +P L L L EN + + +LT L L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVF 524
+ L LP L L+LS N++ + + L + + N LT + G
Sbjct: 64 RAELTKLQVDG--TLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVP-------GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
L +L L L N L +P L+ L + N ++ L + +GL
Sbjct: 121 RGLGELQELYLKGNEL-----KTLPPGLLTPTPKLEKLSLANNNLTELPA--GLLNGLE- 172
Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
+++ L + N + ++ P FF
Sbjct: 173 --------------------NLDTLLLQENSLYTI-PKGFFG------------------ 193
Query: 638 LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
+ LP +L GNP+ C+C + +
Sbjct: 194 -----------SHLLPFAFLHGNPWLCNCEILYF 216
Score = 71.3 bits (175), Expect = 2e-13
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
Q + +L L +S +L LP+ GL L+ L + L+ L PG L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------TLPPGLLTPTP 148
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
+L+ L+++++N+ + + L N+ TL L NS+ I
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 58.2 bits (141), Expect = 5e-09
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+S+ + + + L+EL + +L LP + + L++L++ NL +L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-------ELPA 165
Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
G L+GL L L + +++ +I F + L N
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 131 bits (331), Expect = 3e-34
Identities = 69/227 (30%), Positives = 98/227 (43%), Gaps = 34/227 (14%)
Query: 743 TCPK--NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA--------------------- 779
TC C+C N VDC + + +VP IP D
Sbjct: 3 TCETVTGCTC----NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGL 58
Query: 780 ---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836
T + LD N +T+ VF + +L + N+Q+ + F+ L+ L L+L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLN 894
+ FD L KL EL L N+++ I G F+ L +LQ L L N+L+S AFD
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 895 TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID 941
L+ + L N F CS + L WI +NSNKVKDG +
Sbjct: 179 GK--LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHES 223
Score = 100 bits (252), Expect = 1e-23
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 179 SNSGEKIECSGGM----------DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENN 226
+ ++++C G D LDL L TL + G+TK L L+L+ N
Sbjct: 13 NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK---LTWLNLDYN 69
Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
++ ++ F L+ L L +++N L SLP G+F + ++Y N L L G+F +
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
L +L L L++N L S I F L L L+LS N+L + F L LQ + L
Sbjct: 130 LTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 347 NN 348
N
Sbjct: 188 GN 189
Score = 99.8 bits (249), Expect = 3e-23
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
++LDL++ + + D F L L + L N++ ++A +F+ L L L L+NN L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
+ F + + L +L L N + +PS L LK L L NQ+ I G+F L L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
L L N + ++ G L L+ + L N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 98.2 bits (245), Expect = 9e-23
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 27/176 (15%)
Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
LDL S L++ + + TF GL +L LNL N+L + A F DL L L L NN +
Sbjct: 40 LDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
+ F L L +YL N++ + + +F+ L + L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL------------------------TKL 133
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
KEL L++N + IP+ A +L L+TL L NQ+ + +G+F L +L + L N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 94.0 bits (234), Expect = 2e-21
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKI 448
KL L + L + F+ + L L+L N + + + +L L TL L NQ++ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 449 ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLA 508
G F +L QL L L N + +L SG+ L L+ L L+ N++ I G F+K L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 509 AIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
+ L +N L + +G F L +L + L N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 84.7 bits (210), Expect = 3e-18
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
+ LDL ++ + + +F+ L +LT L L N + LS+G+ +L L L L+ N++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVP----- 549
+ +G F+ +L + L N L + +GVF L +L L L+ N L +P
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-----QSIPAGAFD 152
Query: 550 --GNLKWLDIHGNYISS 564
NL+ L + N + S
Sbjct: 153 KLTNLQTLSLSTNQLQS 169
Score = 78.2 bits (193), Expect = 6e-16
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 29/186 (15%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
K L +T L + L + GL +L LN+ + ++++S VF L
Sbjct: 24 KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL--GD 208
+ TL L+ N + + F L L L N+L++L G
Sbjct: 84 ELGTLGLANNQLASLPLGVF-----------------DHLTQLDKLYLGGNQLKSLPSGV 126
Query: 209 YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISE 268
+ +TK L+ L L N++ I AF L++L+ L++S+N L S+P G F +
Sbjct: 127 FDRLTK---LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Query: 269 IYAQKN 274
I N
Sbjct: 184 ITLFGN 189
Score = 74.3 bits (183), Expect = 1e-14
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 44/199 (22%)
Query: 74 EELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNI 133
E+L + + L L F GL L L ++ LQ L G D L EL L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-------TLSAGVFDDLTELGTLGL 90
Query: 134 SSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECS 188
+++ + S+ VF L + L L N ++ + D L
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------------------- 131
Query: 189 GGMDLRILDLSHNKLRTLGDYSGI-TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
L+ L L+ N+L+++ G K LQ L L N++ + AF L L+ + +
Sbjct: 132 ---KLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 248 SSNHLVSLPEGLFSSCRDI 266
N S +I
Sbjct: 187 FGNQ-------FDCSRCEI 198
Score = 29.7 bits (67), Expect = 5.2
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL---------DLTALRL 643
IP E L + + + ++ TF + L +++ N + L +L L L
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 139 bits (351), Expect = 3e-34
Identities = 62/299 (20%), Positives = 112/299 (37%), Gaps = 21/299 (7%)
Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
+ + I QI P+ A + N+ + + I +I A + +
Sbjct: 1 MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDL 337
+ L + L L+ N L+ D L L L L N++ + + KDL
Sbjct: 57 SVQG--IQYLPNVTKLFLNGNKLT----DIKPLTNLKNLGWLFLDENKIKDLSS--LKDL 108
Query: 338 VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397
L+ L L +N I I + L L ++YL N+I IT + L L L+L +N
Sbjct: 109 KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164
Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
+ +I + L+ L LS N I ++ AL+ L L L+L + NL
Sbjct: 165 ISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221
Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
++ D ++ ++ + E N+ + +F + + + + F
Sbjct: 222 VPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278
Score = 125 bits (314), Expect = 1e-29
Identities = 51/337 (15%), Positives = 119/337 (35%), Gaps = 41/337 (12%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
+ + + + I + + +L ++ + + +EL + + + I
Sbjct: 1 MGETITVSTPIKQI--FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS 57
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
++ + L +T L L N + ++ L L +L L L +NKI + + + K+L
Sbjct: 58 VQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111
Query: 508 AAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
++ L+ N ++DING L L L+ L + N I+ +
Sbjct: 112 KSLSLEHNGISDING----LVHL-------------------PQLESLYLGNNKITDITV 148
Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVD 627
+ + L N+I +I L+ ++ L+++ N I ++ NL ++
Sbjct: 149 ---LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 203
Query: 628 IYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYP 687
+++ + + VP G+ + D N +
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKN----TDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259
Query: 688 KIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDI 724
++ + + ++ H ++ Y YD+
Sbjct: 260 EVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296
Score = 118 bits (297), Expect = 2e-27
Identities = 54/305 (17%), Positives = 105/305 (34%), Gaps = 36/305 (11%)
Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
D E N+ ++ L +I + + + I+ + + +
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN-------- 66
Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
+ L L+ NKL + +T + L L L+ N+I ++ L
Sbjct: 67 -----------VTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS--LKDLKK 110
Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
L+ L++ N + + GL + +Y N + +++ +L +L L L N +S
Sbjct: 111 LKSLSLEHNGISDI-NGL-VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166
Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSL 361
D GL +L L LS N ++ + A L L L+L + N +L
Sbjct: 167 ----DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220
Query: 362 YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA 421
+T+ ++ + +G Y + N S F + + +
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280
Query: 422 IVEIP 426
V P
Sbjct: 281 RVTQP 285
Score = 67.4 bits (164), Expect = 2e-11
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 14/219 (6%)
Query: 760 VVDCSEQQISTVPPRIPM-DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
+ + +++ + P + + ++LD N K + + K + SL + ++ I I
Sbjct: 69 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDI-- 124
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
L L+ L+L NN IT L KL L L++N+I I L LQ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180
Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT---WIIDNSNKVKDGLD 935
L N + RA N L + L + Q + + +
Sbjct: 181 YLSKNHISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238
Query: 936 ISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVS 974
IS D P ++ + + + + I
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277
Score = 55.9 bits (134), Expect = 7e-08
Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
++ I+ I + + +L+ +T + L + ++ + I+ +
Sbjct: 4 TITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 59
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQELQTWI 923
L ++ L L+GN+L + N L ++L N S L++L++
Sbjct: 60 G--IQYLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIKDLSSLKDLKKLKSLS 115
Query: 924 IDNSNKVKD 932
+++ N + D
Sbjct: 116 LEH-NGISD 123
Score = 53.2 bits (127), Expect = 4e-07
Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 34/192 (17%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
S +++ L+ L + + + ++ + L L+ L L +K + L L
Sbjct: 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL-----YLGNNKITDIT----VLSRL 152
Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
+L L++ + I I L +Q L LS+N I D+ L
Sbjct: 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRAL----------------- 193
Query: 186 ECSGGMDLRILDLSHNKLRTLGDY--SGITKFRRLQNLHLENNEISQIAPNAFVALSSLR 243
+G +L +L+L + S + ++N I+ + +++
Sbjct: 194 --AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251
Query: 244 ILNISSNHLVSL 255
+ VS
Sbjct: 252 WHLPEFTNEVSF 263
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 124 bits (313), Expect = 2e-32
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 36/190 (18%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
CP C+C VV CS + + +P IP D T +YLDGN F +P
Sbjct: 3 RCPTECTC------LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK-------- 48
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
+ L ++ L NN I+ F N+ +L L L NR+
Sbjct: 49 -----------------ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 863 YIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
I TF+ L SL++L L GN + AF+ + L + +G NP C C +Q L
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA--LSHLAIGANPLYCDC-NMQWLS 148
Query: 921 TWIIDNSNKV 930
W+ +
Sbjct: 149 DWVKSEYKEP 158
Score = 81.6 bits (202), Expect = 1e-17
Identities = 33/103 (32%), Positives = 47/103 (45%)
Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
EL L N +P LS L +DL N+IS + N SF N+ QL L L N + +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L SL +L+L N I + G F L+ + + +N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 74.3 bits (183), Expect = 4e-15
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
L+L+ N+ + + P L ++++S+N + +L FS+ + + N L
Sbjct: 34 TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNN 324
+ F L+ L +L L N +S + E F L L L + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGAN 136
Score = 70.0 bits (172), Expect = 1e-13
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
L L N+ T + K + L +DL NN I + + +F ++ L T+ LS NR+ I
Sbjct: 35 ELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
F+GL L L+L N + + AF + SAL L + +N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 64.6 bits (158), Expect = 8e-12
Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
L L N + + +L I LS NRI ++ F+ + L L LS N L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
I + F L L+ L L N IS + G+F +L L+
Sbjct: 93 IPPRTF-----------------------DGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 461 DLRLVDN 467
L + N
Sbjct: 130 HLAIGAN 136
Score = 64.2 bits (157), Expect = 1e-11
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 192 DLRILDLSHNKLRTL-GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
D+ L L N+ + + S L + L NN IS ++ +F ++ L L +S N
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKH---LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
L +P F + + + N + + G F+ L L L + +N
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 61.9 bits (151), Expect = 6e-11
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
L L N + L +++LSNN ++ + ++F ++ L L L N +
Sbjct: 35 ELYLDGNQFTLVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
I F L +L + L N I + FN L LS L + N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 61.2 bits (149), Expect = 1e-10
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 37 LSFVPTDLITKLNIDCDATVL-LDS-SITT--KSFQNIYSLEELKISNCKLVELPVDVFS 92
L +P I D T L LD T K N L + +SN ++ L FS
Sbjct: 22 LKVLPK------GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 93 GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANI 152
+ L L ++ L+ + P + DGL+ L++L++ ++I + + F L+ +
Sbjct: 76 NMTQLLTLILSYNRLR-------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
Query: 153 QTLNLSRN 160
L + N
Sbjct: 129 SHLAIGAN 136
Score = 59.6 bits (145), Expect = 5e-10
Identities = 41/239 (17%), Positives = 63/239 (26%), Gaps = 93/239 (38%)
Query: 504 NKRLAAI-----------RLDSNFLTDINGVFTYLAQLLWLNLSENHLVW-----FDYAM 547
NK L + LD N T + + L ++LS N + F M
Sbjct: 19 NKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NM 77
Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
L L + N + + DGL S+ +L ++ N
Sbjct: 78 T--QLLTLILSYNRLRCIPP--RTFDGL---------------------KSLRLLSLHGN 112
Query: 608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCS 667
I V P F+ +L L +G NP CDC+
Sbjct: 113 DISVV-PEGAFN--DL--------------------------SALSHLAIGANPLYCDCN 143
Query: 668 MDWLP--IINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPAS---EAAPSQYLCP 721
M WL + + P C G + ++ C
Sbjct: 144 MQWLSDWVKSEYKEP------------GIARCA-----GPGEMADKLLLTTPSKKFTCA 185
Score = 53.5 bits (129), Expect = 5e-08
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 42/144 (29%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
K L + L D + LVP L + L ++++S++ I ++S+ F ++
Sbjct: 20 KGLKVLPKGIPRDVTELYLD-GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 151 NIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
+ TL LS N +R I D L LR+L L N +
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLK----------------------SLRLLSLHGNDISV 116
Query: 206 LGDYSGITKFRRLQNL---HLENN 226
+ + G F L L + N
Sbjct: 117 VPE--GA--FNDLSALSHLAIGAN 136
Score = 51.9 bits (125), Expect = 2e-07
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
T+L L N L L L +++LS N+I + +F +L + L N L
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 520 I-NGVFTYLAQLLWLNLSENHL 540
I F L L L+L N +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDI 114
Score = 47.3 bits (113), Expect = 8e-06
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 74 EELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNI 133
EL + + +P S ++L + ++ + L S + +L L +
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRIS-------TLSNQSFSNMTQLLTLIL 85
Query: 134 SSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
S + ++ I F L +++ L+L N I +
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 124 bits (313), Expect = 5e-32
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 728 ALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGN 787
A+ H + CP CSC + VDC ++ ++VP IP +A +YL N
Sbjct: 1 AMVHHHHHHSA----ACPSQCSC------SGTTVDCRSKRHASVPAGIPTNAQILYLHDN 50
Query: 788 TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDN 847
+ VF N+ LY+ ++Q+ + F+ L+ L VL L N +T FD
Sbjct: 51 QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110
Query: 848 LEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLG 905
L L EL++ N++ + G L L L LD N+LKS AFD ++ L YL
Sbjct: 111 LVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS--LTHAYLF 167
Query: 906 NNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
NP+ C C + L+ W+ D+++ + +S
Sbjct: 168 GNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDS 205
Score = 85.5 bits (212), Expect = 1e-18
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L+L +N+I+++ P F +L +L+ L + SN L +LP G+F S ++ + N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 279 LSRGLFHKLEQLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD 336
L +F +L L L + N L+ I+ L L L L N+L I F
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIER-----LTHLTHLALDQNQLKSIPHGAFDR 157
Query: 337 LVFLQRLDLRNN 348
L L L N
Sbjct: 158 LSSLTHAYLFGN 169
Score = 82.1 bits (203), Expect = 2e-17
Identities = 44/127 (34%), Positives = 62/127 (48%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
Q L L +N I +E F SL NL +YL N++ + +F+ L L+ L L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
+ S F LKEL + N + E+P + L L L L +NQ+ I +G+F L LT
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 461 DLRLVDN 467
L N
Sbjct: 163 HAYLFGN 169
Score = 70.9 bits (174), Expect = 1e-13
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
+L L N ++ ++ F LI L L L +N+L + F L L LDL N +
Sbjct: 44 ILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
+ F L +L +++ N++ + L L+ L L N L +I AF S+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 412 LKELDLSSN 420
L L N
Sbjct: 161 LTHAYLFGN 169
Score = 69.3 bits (170), Expect = 4e-13
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
+ L L +NQI+K+E G F +L L +L L N +G L G+ L L VL+L N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
+ F++ L + + N LT++ L L L L +N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 67.4 bits (165), Expect = 2e-12
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
+ L L N I ++ L LK L LG NQ+ + G F +L QLT L L N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
L S + L L+ L + NK+ ++ G E+ L + LD N L I +G F L+ L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 531 LWLNLSEN 538
L N
Sbjct: 162 THAYLFGN 169
Score = 66.6 bits (163), Expect = 4e-12
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
+ +IL L N++ L G + + L+ L+L +N++ + F +L+ L +L++ +
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLIN---LKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETT 309
N L LP +F + E++ N L EL RG +L L L L N L S I
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKS--IPHGA 154
Query: 310 FIGLIRLIILNLSNN 324
F L L L N
Sbjct: 155 FDRLSSLTHAYLFGN 169
Score = 60.1 bits (146), Expect = 6e-10
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 77/251 (30%)
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVW 542
++L L N+I ++E G F+ L + L SN L + GVF L QL L+L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 543 FDYAMVPG------NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
+ +LK L + N ++ L + L+
Sbjct: 102 ---VLPSAVFDRLVHLKELFMCCNKLTELPRGI---ERLT-------------------- 135
Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656
+ L ++ N +KS+ PH FD L +L Y
Sbjct: 136 -HLTHLALDQNQLKSI-PHGAFD--RL--------------------------SSLTHAY 165
Query: 657 LGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPA- 710
L GNP+DC+C +W + ++TS +M + D D+ C + +T + A
Sbjct: 166 LFGNPWDCECRDIMYLRNW---VADHTSIAMRWDGKAVNDPDSAKC----AGTNTPVRAV 218
Query: 711 SEAAPSQYLCP 721
+EA+ S CP
Sbjct: 219 TEASTSPSKCP 229
Score = 59.7 bits (145), Expect = 7e-10
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 36/165 (21%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
KR N + L ++ L PG D L L+ L + S+ + ++ VF SL
Sbjct: 29 KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 151 NIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
+ L+L N + + D L L+ L + NKL
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLV----------------------HLKELFMCCNKLTE 126
Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
L GI + L +L L+ N++ I AF LSSL + N
Sbjct: 127 LPR--GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 52.4 bits (126), Expect = 2e-07
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 28/159 (17%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQ------WDKSK 113
+ + F ++ +L+EL + + +L LPV VF L L L + T L +D+
Sbjct: 53 TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112
Query: 114 KLDL----------VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN--- 160
L +P ++ L L L + + +KSI F L+++ L N
Sbjct: 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172
Query: 161 -SIRDIDTL-------GFAVRRASAESNSG-EKIECSGG 190
RDI L R ++ + + +C+G
Sbjct: 173 CECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT 211
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 124 bits (313), Expect = 5e-30
Identities = 86/474 (18%), Positives = 161/474 (33%), Gaps = 93/474 (19%)
Query: 126 RELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVRRASA-ESN 180
++Q L+I + SD + L Q + L + + + SA N
Sbjct: 3 LDIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS----SALRVN 55
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF--------RRLQNLHLENNEIS--- 229
L L+L N+L GD G+ ++Q L L+N ++
Sbjct: 56 P----------ALAELNLRSNEL---GD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101
Query: 230 -QIAPNAFVALSSLRILNISSNHL-----VSLPEGLFSSCRDISEIYAQKNSL-----VE 278
+ + L +L+ L++S N L L EGL + ++ + SL
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161
Query: 279 LSRGLFHKLEQLLVLDLSSNHLSS---NHIDETTFIGLIRLIILNLSNNELTRIDAKTF- 334
L+ L L +S+N ++ + + +L L L + +T + +
Sbjct: 162 LASVL-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220
Query: 335 ---KDLVFLQRLDLRNNSIG-----YIEDNAFLSLYNLHTIYLSENRIHHITA-HLFNGL 385
L+ L L +N +G + L T+++ E I L L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
Query: 386 YVLSKLT---LSNNLLVNIDSKAF-----KNCSALKELDLSSNAI-----VEIPSALSEL 432
L L+ N L + ++ + L+ L + S + S L++
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 433 PFLKTLDLGENQIS-----KIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPS 482
FL L + N++ ++ G + L L L D ++ + L++ L S
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHS 399
Query: 483 LEVLNLSKNKIHQIEIGTF-----EKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
L L+LS N + I + L + L + ++ + L L
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE--MEDRLQALE 451
Score = 117 bits (295), Expect = 1e-27
Identities = 80/430 (18%), Positives = 143/430 (33%), Gaps = 80/430 (18%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ-----IAPNAFVALSSLRILN 246
D++ LD+ +L + ++ Q + L++ +++ I+ +A +L LN
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELN 62
Query: 247 ISSNHL-----VSLPEGLFSSCRDISEIYAQKNSL-----VELSRGLFHKLEQLLVLDLS 296
+ SN L + +GL + I ++ Q L LS L L L L LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLS 121
Query: 297 SNHLSS---NHIDETTFIGLIRLIILNLSNNELTRIDAKTF----KDLVFLQRLDLRNNS 349
N L + E RL L L L+ + + + L + NN
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 350 IGYIEDNAFLSL--------YNLHTIYLSENRIHHITA-HLFNGLYV---LSKLTLSNNL 397
I + L L + L + L + L +L L +N
Sbjct: 182 IN---EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 398 L----VNIDSKAFKNCS-ALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQIS- 446
L + + S L+ L + I ++ L LK L L N++
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 447 ----KIENGSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLEVLNLSKNKIH---- 494
+ + QL L + + S +L + L L +S N++
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358
Query: 495 -QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK 553
++ G + L + L ++D + + LA L NH +L+
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSD-SSC-SSLAATL----LANH-----------SLR 401
Query: 554 WLDIHGNYIS 563
LD+ N +
Sbjct: 402 ELDLSNNCLG 411
Score = 87.7 bits (218), Expect = 5e-18
Identities = 62/327 (18%), Positives = 120/327 (36%), Gaps = 59/327 (18%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLY----NLHTIYLSENRIHHITA-HLFNGLYVLSKLT-- 392
+Q LD++ + D + L + L + + + + L V L
Sbjct: 5 IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 393 -LSNNLL----VNIDSKAFKNCSA-LKELDLSSNAI-----VEIPSALSELPFLKTLDLG 441
L +N L V+ + + S +++L L + + + S L LP L+ L L
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 442 ENQIS-----KIENGSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLEVLNLSKNK 492
+N + + G +L L+L ++ S + +L P + L +S N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 493 I-----HQIEIGTFEKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHL-- 540
I + G + +L A++L+S +T + G+ A L L L N L
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 541 ---VWFDYAMVPGN--LKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHNRI---- 587
++ + L+ L I I++ ++ L S+K L + N +
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNELGDEG 300
Query: 588 -LEISE-LSIPN-SVEVLFINNNLIKS 611
+ E L P +E L++ + +
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTA 327
Score = 83.1 bits (206), Expect = 1e-16
Identities = 77/460 (16%), Positives = 144/460 (31%), Gaps = 146/460 (31%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNL--KRLTINTRNLQWDKSKKLDLVPGSLDG 124
+ + +L+EL +S+ L + +GL+ L L R
Sbjct: 109 LRTLPTLQELHLSDNLLGD------AGLQLLCEGLLDPQCR------------------- 143
Query: 125 LRELQVLNISSSNIKSISDDVFCSL----ANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
L+ L + ++ + S + S+ + + L +S N I +
Sbjct: 144 ---LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE---------------- 184
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ-----IAPNA 235
+G ++ C G L + +L+ L LE+ ++ +
Sbjct: 185 AGVRVLCQG--------LKDSPC-------------QLEALKLESCGVTSDNCRDLC-GI 222
Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
+ +SLR L + SN L G + EL GL H +L L +
Sbjct: 223 VASKASLRELALGSNKL--GDVG-----------------MAELCPGLLHPSSRLRTLWI 263
Query: 296 SSNHLSSNHIDE--TTFIGLIRLIILNLSNNELTRIDAKTFKDLVF-----LQRLDLRNN 348
+++ + L L+L+ NEL A+ + + L+ L +++
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323
Query: 349 SIGYIEDNAFLSL-------YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401
S L + +S NR+ G+ L +
Sbjct: 324 SFT---AACCSHFSSVLAQNRFLLELQISNNRLED------AGVRELCQGLGQPG----- 369
Query: 402 DSKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQIS-----KIENG 451
S L+ L L+ + + + + L L+ LDL N + ++
Sbjct: 370 --------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421
Query: 452 SFKNLQQLTDLRLVDNNIGNLSSGMLYEL----PSLEVLN 487
+ L L L D L L PSL V++
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
Score = 41.1 bits (97), Expect = 0.003
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 826 SLQVLHLENNLITH----FYGYEFDNLEKLSELYLQENRI-----EYIANGTFNALISLQ 876
L+ L LE+ +T + L EL L N++ + G + L+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 877 VLQLDGNRL--KSFR--AFDLNTNSMLRKVYLGNNPFSCSCATL 916
L + + K L L+++ L N A L
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Score = 39.6 bits (93), Expect = 0.008
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 16/120 (13%)
Query: 804 LSLYVNN---SQIEVILNQTFNGLSSLQVLHLENNLITH----FYGYEFDNLEKLSELYL 856
L+L N + + + S L+ L + IT E L EL L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 857 QENRIE-----YIANGTFNALISLQVLQLDGNRLKSFRAFD----LNTNSMLRKVYLGNN 907
N + + L+ L + + L N L ++ + NN
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Score = 38.8 bits (91), Expect = 0.011
Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 805 SLYVNNSQI-----EVILNQTFNGLSSLQVLHLENNLITHFY----GYEFDNLEKLSELY 855
L+++++ + +++ + L+ L LE ++ EL
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 856 LQENRI-----EYIANGTFNALISLQVLQLDGNRLK----SFRAFDLNTNSMLRKVYLGN 906
+ N I + G ++ L+ L+L+ + + + + LR++ LG+
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 907 NPFSCSCATL 916
N
Sbjct: 237 NKLGDVGMAE 246
Score = 36.9 bits (86), Expect = 0.043
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 825 SSLQVLHLENNLITHFYGYEF-----DNLEKLSELYLQENRIE-----YIANGTFNALIS 874
L+ L +++ T L EL + NR+E + G
Sbjct: 313 CQLESLWVKSCSFTAA-CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371
Query: 875 LQVLQLDGNRLKSFRAFD----LNTNSMLRKVYLGNNPFS 910
L+VL L + L N LR++ L NN
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
Score = 34.9 bits (81), Expect = 0.19
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 13/107 (12%)
Query: 823 GLSSLQVLHLENNLITHFY----GYEFDNLEKLSELYLQENRI-----EYIANGTFNALI 873
L QV+ L++ +T L+EL L+ N + + G
Sbjct: 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85
Query: 874 SLQVLQLDGNRLKSFRAFD----LNTNSMLRKVYLGNNPFSCSCATL 916
+Q L L L L T L++++L +N + L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132
Score = 29.2 bits (66), Expect = 9.7
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 27/121 (22%)
Query: 825 SSLQVLHLENNLIT-----HFYGYEFDNLEKLSELYLQENRI-----EYIANGTFNALIS 874
+LQ LHL +NL+ D +L +L L+ + E +A+ A
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPD 171
Query: 875 LQVLQLDGNRL-----KSFRAFDLNTNSMLRKVYLGNNPFS-----------CSCATLQE 918
+ L + N + + ++ L + L + + S A+L+E
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 919 L 919
L
Sbjct: 232 L 232
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 115 bits (291), Expect = 1e-29
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C C VDC+ + + +P IP+ T + L+ N I +
Sbjct: 2 CPAMCHC------EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS--------- 46
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
+ F L L L L+ N +T F+ + EL L EN+I+
Sbjct: 47 --------------DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
I+N F L L+ L L N++ +F+ + NS L + L +NPF+C+C L
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNS-LTSLNLASNPFNCNC-HLAWFAE 149
Query: 922 WIIDNSNKV 930
W+ S
Sbjct: 150 WLRKKSLNG 158
Score = 77.3 bits (191), Expect = 3e-16
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 413 KELDLSSNAIVEIPSA--LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
EL L+ N + I S LP L L+L NQ++ IE +F+ + +L+L +N I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+S+ M L L+ LNL N+I + G+FE L ++ L SN
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 74.7 bits (184), Expect = 3e-15
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 318 ILNLSNNELTRIDAK-TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHH 376
L L++NEL RI + F L L +L+L+ N + IE NAF ++ + L EN+I
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
I+ +F GL+ L L L +N + + +F++ ++L L+L+SN
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 68.1 bits (167), Expect = 6e-13
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 436 KTLDLGENQISKIE-NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
L L +N++ +I +G F L L L L N + + ++ L L +NKI
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
+I F +L + L N ++ + G F +L L LNL+ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 67.7 bits (166), Expect = 8e-13
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 341 QRLDLRNNSIGYIEDNA-FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
L L +N +G I + F L +L + L N++ I + F G + +L L N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
I +K F LK L+L NQIS + GSF++L L
Sbjct: 92 EISNKMFLGLHQLKTLNLYD-----------------------NQISCVMPGSFEHLNSL 128
Query: 460 TDLRLVDN 467
T L L N
Sbjct: 129 TSLNLASN 136
Score = 65.0 bits (159), Expect = 7e-12
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
L L+ N L + F L L+ L L N+LT I+ F+ +Q L L N I
Sbjct: 33 ELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
I + FL L+ L T+ L +N+I + F L L+ L L++N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 64.3 bits (157), Expect = 1e-11
Identities = 26/107 (24%), Positives = 46/107 (42%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
L L+ N+L + + L L L+ N+++ I PNAF S ++ L + N
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
+ + +F + + N + + G F L L L+L+SN
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 59.2 bits (144), Expect = 6e-10
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
F + L +L++ +L + + F G +++ L + ++ ++ GL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-------EISNKMFLGLH 102
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
+L+ LN+ + I + F L ++ +LNL+ N
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 56.2 bits (136), Expect = 7e-09
Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 73/186 (39%)
Query: 504 NKRLAAI-----------RLDSNFLTDI--NGVFTYLAQLLWLNLSENHLVW-----FDY 545
+ L I L+ N L I +G+F L L+ L L N L F+
Sbjct: 17 GRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 546 AMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
A +++ L + N I ++N ++ GL ++ L +
Sbjct: 77 AS---HIQELQLGENKIKEISN--KMFLGLH---------------------QLKTLNLY 110
Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
+N I V F+ +L +L L NPF+C+
Sbjct: 111 DNQISCV-MPGSFE--HL--------------------------NSLTSLNLASNPFNCN 141
Query: 666 CSMDWL 671
C + W
Sbjct: 142 CHLAWF 147
Score = 51.5 bits (124), Expect = 3e-07
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 74 EELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLN 132
EL +++ +L + D +F L +L +L + L + P + +G +Q L
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-------GIEPNAFEGASHIQELQ 84
Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
+ + IK IS+ +F L ++TLNL N I +
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 115 bits (290), Expect = 1e-29
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 34/192 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + + C+ + +++VP IP AT + L+ N +++P+ V
Sbjct: 1 CPSRCSC------SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV------- 47
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
F+ L+ L L L N I FD L KL+ LYL EN+++
Sbjct: 48 -----------------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
+ NG F+ L L+ L LD N+LKS FD T+ L+K++L NP+ CSC + L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSR 148
Query: 922 WIIDNSNKVKDG 933
W+ NS K +
Sbjct: 149 WLNKNSQKEQGS 160
Score = 71.1 bits (175), Expect = 3e-14
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
L LE+N++ + F L+ L L++S N + SLP+G+F ++ +Y +N L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNN 324
L G+F KL QL L L +N L S + + F L L + L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTN 134
Score = 67.3 bits (165), Expect = 8e-13
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
L+L N++ + +G F L QLT L L N I +L G+ +L L +L L +NK+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
+ G F+K +L + LD+N L + +G+F L L + L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 65.0 bits (159), Expect = 5e-12
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
SS L + SN L SLP G+F ++++ +N + L G+F KL +L +L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
L S + F L +L L L N+L + F L LQ++ L N
Sbjct: 88 LQS--LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 64.2 bits (157), Expect = 9e-12
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
L+L SN + +P +L L L L +NQI + +G F L +LT L L +N + +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
L +G+ +L L+ L L N++ + G F++ L I L +N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 60.7 bits (148), Expect = 1e-10
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 23/127 (18%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
RL+L +N + + F L L + LS+N+I + +F+ L L+ L L N L +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
+ + F L LK L L NQ+ + +G F L L
Sbjct: 91 LPNGVFDK-----------------------LTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 461 DLRLVDN 467
+ L N
Sbjct: 128 KIWLHTN 134
Score = 60.4 bits (147), Expect = 2e-10
Identities = 30/103 (29%), Positives = 50/103 (48%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
L L +N+L + F L L +L L N I + D F L L +YL EN++ +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
+F+ L L +L L N L ++ F ++L+++ L +N
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 60.0 bits (146), Expect = 2e-10
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
L+L SN L S + F L +L L+LS N++ + F L L L L N +
Sbjct: 32 RLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
+ + F L L + L N++ + +F+ L L K+ L N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 59.6 bits (145), Expect = 3e-10
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 179 SNSGEKIECSGGM----------DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENN 226
S SG +I C+ L+L NKL++L G + +T+ L L L N
Sbjct: 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQ---LTKLSLSQN 62
Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
+I + F L+ L IL + N L SLP G+F + E+ N L + G+F +
Sbjct: 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122
Query: 287 LEQLLVLDLSSN 298
L L + L +N
Sbjct: 123 LTSLQKIWLHTN 134
Score = 53.0 bits (128), Expect = 6e-08
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
Query: 37 LSFVPTDLITKLNIDCDATVL-LDS----SITTKSFQNIYSLEELKISNCKLVELPVDVF 91
L+ VPT I AT L L+S S+ F + L +L +S ++ LP VF
Sbjct: 19 LTSVPT------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72
Query: 92 SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN 151
L L L ++ LQ L G D L +L+ L + ++ +KS+ D +F L +
Sbjct: 73 DKLTKLTILYLHENKLQ-------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Query: 152 IQTLNLSRN----SIRDIDTL-GFAVRRASAESNSGEKIECSGG 190
+Q + L N S ID L + + + E S +CSG
Sbjct: 126 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS---AKCSGS 166
Score = 41.9 bits (99), Expect = 3e-04
Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 86/188 (45%)
Query: 504 NKRLAAI-----------RLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG- 550
+K L ++ L+SN L + +GVF L QL L+LS+N + ++ G
Sbjct: 16 SKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----SLPDGV 71
Query: 551 -----NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
L L +H N + SL
Sbjct: 72 FDKLTKLTILYLHENKLQSL---------------------------------------- 91
Query: 606 NNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQN-----KTLPEFYLGG 659
P+ FDK + L +L L +LK VP +L + +L
Sbjct: 92 --------PNGVFDKLTQL----------KELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Query: 660 NPFDCDCS 667
NP+DC C
Sbjct: 134 NPWDCSCP 141
Score = 41.9 bits (99), Expect = 3e-04
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 39/143 (27%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
K LT + L+ + +K L G D L +L L++S + I+S+ D VF L
Sbjct: 17 KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 151 NIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
+ L L N ++ + D L L+ L L N+L++
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLT----------------------QLKELALDTNQLKS 114
Query: 206 L--GDYSGITKFRRLQNLHLENN 226
+ G + +T LQ + L N
Sbjct: 115 VPDGIFDRLTS---LQKIWLHTN 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 122 bits (308), Expect = 6e-29
Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 32/278 (11%)
Query: 195 ILDLSHNKLRTLGD--YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
+ +N + +S K+ + NE + ++ L ++ +L
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
SLP+ L + +N+L+ L L LD N LS+ + E
Sbjct: 72 SSLPDNLPPQIT---VLEITQNALISLPELP----ASLEYLDACDNRLST--LPEL---- 118
Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
L L++ NN+LT + L+ ++ NN + + + +L + + N
Sbjct: 119 PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNN 170
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS---ALKELDLSSNAIVEIPSAL 429
++ + + L L +S NLL ++ + +N N I IP +
Sbjct: 171 QLTFLPELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226
Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L T+ L +N +S S D
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264
Score = 109 bits (273), Expect = 1e-24
Identities = 42/254 (16%), Positives = 90/254 (35%), Gaps = 28/254 (11%)
Query: 291 LVLDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349
L + N +S + D + + + + NE + + + L L +
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLN 70
Query: 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNC 409
+ + DN + + +++N + + + L L +N L +
Sbjct: 71 LSSLPDNLPP---QITVLEITQNALISLPELPAS----LEYLDACDNRLSTLPE----LP 119
Query: 410 SALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
++LK LD+ +N + +P + L + ++ NQ++ + L L + +N +
Sbjct: 120 ASLKHLDVDNNQLTMLPELPALL---EYINADNNQLTMLPE----LPTSLEVLSVRNNQL 172
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQI--EIGTFEKNKRL-AAIRLDSNFLTDINGVFTY 526
L SLE L++S N + + ++ R N +T I
Sbjct: 173 TFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228
Query: 527 LAQLLWLNLSENHL 540
L + L +N L
Sbjct: 229 LDPTCTIILEDNPL 242
Score = 105 bits (263), Expect = 2e-23
Identities = 67/426 (15%), Positives = 122/426 (28%), Gaps = 57/426 (13%)
Query: 96 NLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTL 155
N L+ N+ S + D + + + + S+ + C + L
Sbjct: 9 NNFSLSQNSFYNT--ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSEL 64
Query: 156 NLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF 215
L+R ++ + + + +L+++ N L +L +
Sbjct: 65 QLNRLNLSSLPD--------------------NLPPQITVLEITQNALISLPE-----LP 99
Query: 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
L+ L +N +S + P +SL+ L++ +N L LPE + I A N
Sbjct: 100 ASLEYLDACDNRLSTL-PE---LPASLKHLDVDNNQLTMLPELPAL----LEYINADNNQ 151
Query: 276 LVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA---K 332
L L L VL + +N L + E L L++S N L + A +
Sbjct: 152 LTMLP----ELPTSLEVLSVRNNQL--TFLPEL----PESLEALDVSTNLLESLPAVPVR 201
Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
R N I +I +N LSL TI L +N + +
Sbjct: 202 NHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260
Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452
L+ P + + +
Sbjct: 261 GPRIYF-----SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF 315
Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
L R +++ L +L + L + + E L L
Sbjct: 316 LDRLSDTVSARNTSGFREQVAA-WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNL 374
Query: 513 DSNFLT 518
L
Sbjct: 375 RKTLLV 380
Score = 94.3 bits (234), Expect = 8e-20
Identities = 60/401 (14%), Positives = 122/401 (30%), Gaps = 83/401 (20%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
EL+++ L LP ++ + L +T N L +P L L
Sbjct: 60 QFSELQLNRLNLSSLPDNLPPQITVL-EITQN----------ALISLPELPASLEY---L 105
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
+ + + ++ + A+++ L++ N + + L
Sbjct: 106 DACDNRLSTLPE----LPASLKHLDVDNNQLTMLPEL---------------------PA 140
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
L ++ +N+L L + L+ L + NN+++ + SL L++S+N
Sbjct: 141 LLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNL 191
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L SLP H E + N ++ HI E +
Sbjct: 192 LESLPAVPVR---------------------NHHSEETEIFFRCRENRIT--HIPE-NIL 227
Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY---IEDNAFLSLYNLHTIY 368
L + L +N L+ ++ ++ L + T +
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287
Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
EN+ ++ + T S L D+ + +N S + +
Sbjct: 288 FPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFR------EQVAAWLEK 341
Query: 429 LSELPFL--KTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
LS L ++ + + E+ L LV
Sbjct: 342 LSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQ 382
Score = 88.9 bits (220), Expect = 3e-18
Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 57/286 (19%)
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE--LPFLKTLDL 440
N + LS+ N + + F ++ L E S L E + L L
Sbjct: 8 NNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66
Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
+S + + + L + N + +L SLE L+ N++ +
Sbjct: 67 NRLNLSSLPDNLPPQITVL---EITQNALISLPE----LPASLEYLDACDNRLSTLP--- 116
Query: 501 FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560
A L L++ N L P L++++ N
Sbjct: 117 ------------------------ELPASLKHLDVDNNQLTMLPEL--PALLEYINADNN 150
Query: 561 YISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK 620
++ L S++ L +N++ + EL P S+E L ++ NL++S+ P
Sbjct: 151 QLTMLPE--LPT---SLEVLSVRNNQLTFLPEL--PESLEALDVSTNLLESL-PAVPVRN 202
Query: 621 SNLARVDIYANDITKLDLTALRLKPVPQN----KTLPEFYLGGNPF 662
+ +I+ R+ +P+N L NP
Sbjct: 203 HHSEETEIF------FRCRENRITHIPENILSLDPTCTIILEDNPL 242
Score = 70.0 bits (171), Expect = 3e-12
Identities = 53/373 (14%), Positives = 115/373 (30%), Gaps = 60/373 (16%)
Query: 36 NLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS 92
NLS +P +L IT L I +A + L SLE L + +L LP
Sbjct: 70 NLSSLPDNLPPQITVLEITQNALISLPELPA--------SLEYLDACDNRLSTLP----E 117
Query: 93 GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANI 152
+LK L ++ L +P L +N ++ + + + ++
Sbjct: 118 LPASLKHLDVDNNQLTM--------LPELPALLEY---INADNNQLTMLPE----LPTSL 162
Query: 153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI-ECSGGM-----DLRILDLSHNKLRTL 206
+ L++ N + + L ++ +N E + N++ +
Sbjct: 163 EVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222
Query: 207 GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDI 266
+ I + LE+N +S + ++ + + + R +
Sbjct: 223 PE--NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280
Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL---------SSNHIDETTFIGLIRLI 317
++ A E + ++ + +N + + + + F +
Sbjct: 281 AD--AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAW 338
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
+ LS + R Q + ++ ED L+ NL L +
Sbjct: 339 LEKLSASAELR-----------QQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL 387
Query: 378 TAHLFNGLYVLSK 390
+ L L +
Sbjct: 388 FDNDTGALLSLGR 400
Score = 58.4 bits (141), Expect = 1e-08
Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 54/215 (25%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
+ + + +S++P +P T + + N ++P ++ L ++++ +
Sbjct: 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELP----ASLEYLDACDNRLSTL 115
Query: 817 ---------LNQTFNGLS-------SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
L+ N L+ L+ ++ +NN +T + L L ++ N+
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTML----PELPTSLEVLSVRNNQ 171
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSF--------------RAFDLNTNSM-------- 898
+ ++ SL+ L + N L+S F N +
Sbjct: 172 LTFLPEL----PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL 227
Query: 899 ----LRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
+ L +NP S QT D
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262
Score = 56.5 bits (136), Expect = 5e-08
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 15/172 (8%)
Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
D Q++ +P + ++ D N +P ++ L V N+Q+ +
Sbjct: 126 DVDNNQLTMLPELPAL-LEYINADNNQLTMLPELP----TSLEVLSVRNNQLTFLPEL-- 178
Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSE----LYLQENRIEYIANGTFNALISLQV 877
SL+ L + NL+ E +ENRI +I + L
Sbjct: 179 --PESLEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCT 234
Query: 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
+ L+ N L S L+ + + FS S L + D
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286
Score = 36.9 bits (85), Expect = 0.046
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 25/140 (17%)
Query: 802 NMLSLYVNNS--QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD-NLEKLSELYLQE 858
N SL N+ I F+ + L + + + SEL L
Sbjct: 9 NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68
Query: 859 NRIEYIANGTFNALISLQVLQLDGNRLKSF-------RAFDLNTN---------SMLRKV 902
+ + + + VL++ N L S D N + L+ +
Sbjct: 69 LNLSSLPDNLPP---QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL 125
Query: 903 YLGNNPFSC---SCATLQEL 919
+ NN + A L+ +
Sbjct: 126 DVDNNQLTMLPELPALLEYI 145
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 117 bits (296), Expect = 9e-29
Identities = 67/426 (15%), Positives = 114/426 (26%), Gaps = 113/426 (26%)
Query: 66 SFQNIYSLEELKISNC-KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
+ E L L L +R RN
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYH----DVLSQWQRHYNADRNRW--------HSAWRQAN 54
Query: 125 LRELQVLNISSSNIKSISDDV-FCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSG 182
Q+ + +K+ +D + + L L + D
Sbjct: 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH--------- 105
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
L+ + + L L D + +F L+ L L N + + P + +L+ L
Sbjct: 106 ----------LQHMTIDAAGLMELPD--TMQQFAGLETLTLARNPLRAL-PASIASLNRL 152
Query: 243 RILNISS-NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
R L+I + L LPE L S+ + G L L L L +
Sbjct: 153 RELSIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR 196
Query: 302 S--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
S I L L L + N+ L+ + +I
Sbjct: 197 SLPASIAN-----LQNLKSLKIRNSPLSAL-----------------GPAIH-------- 226
Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
L L + L L N F + LK L L
Sbjct: 227 HLPKLEELDLR-----------------------GCTALRNY-PPIFGGRAPLKRLILKD 262
Query: 420 -NAIVEIPSALSELPFLKTLDLGEN-QISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
+ ++ +P + L L+ LDL +S++ + L + + + L
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQAQLDQHRP 321
Query: 478 YELPSL 483
P+
Sbjct: 322 VARPAE 327
Score = 96.2 bits (240), Expect = 2e-21
Identities = 49/363 (13%), Positives = 108/363 (29%), Gaps = 74/363 (20%)
Query: 280 SRGLFHKLEQLLVLDLS-SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
S H L S L H L + ++ + +
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHD------VLSQWQRHYNADRNRWHSAWR-QANSN 56
Query: 339 FLQRLDLRNNSIGYIEDN-AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397
Q ++ D + + L +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-------------------- 96
Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
S L+ + + + ++E+P + + L+TL L N + + S +L
Sbjct: 97 -----PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLN 150
Query: 458 QLTDLRLVDNN--------IGNLSS-GMLYELPSLEVLNLSKNKIHQI--EIGTFEKNKR 506
+L +L + + + + G L +L+ L L I + I +
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL---QN 207
Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSE-NHLVWFDYAMVP------GNLKWLDIHG 559
L ++++ ++ L+ + +L +L L+L L P LK L +
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-----NYPPIFGGRAPLKRLILKD 262
Query: 560 -NYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV------EVLFINNNLIKSV 612
+ + +L +I ++ LD L +P+ + ++ + +L +
Sbjct: 263 CSNLLTLPL--DIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPHLQAQL 316
Query: 613 KPH 615
H
Sbjct: 317 DQH 319
Score = 83.1 bits (206), Expect = 4e-17
Identities = 45/249 (18%), Positives = 91/249 (36%), Gaps = 44/249 (17%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
+ L+ + I L+ELP D L+ LT+ RN L +P S+
Sbjct: 98 DQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLA-RN-------PLRALPASIAS 148
Query: 125 LRELQVLNISSSN-IKSISDDV--------FCSLANIQTLNLSRNSIRDI-DTLGFAVRR 174
L L+ L+I + + + + + L N+Q+L L IR + ++
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN- 207
Query: 175 ASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234
L+ L + ++ L LG I +L+ L L + P
Sbjct: 208 ------------------LKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRNYPP 247
Query: 235 AFVALSSLRILNISS-NHLVSLPEGLFSSCRDISEIYAQKNS-LVELSRGLFHKLEQLLV 292
F + L+ L + ++L++LP + + ++ + L L + +L +
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCI 305
Query: 293 LDLSSNHLS 301
+ + + +
Sbjct: 306 ILVPPHLQA 314
Score = 75.4 bits (186), Expect = 1e-14
Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 31/225 (13%)
Query: 57 LLDSSITT--KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKK 114
+ + + + Q LE L ++ L LP + L L+ L+I + +
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACP----ELTE 165
Query: 115 L------DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DT 167
L G GL LQ L + + I+S+ +L N+++L + + + +
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPA 224
Query: 168 LG-------FAVRRASAESNSGEKI-ECSGGMD-LRILDLSH-NKLRTLGDYSGITKFRR 217
+ +R + GG L+ L L + L TL I + +
Sbjct: 225 IHHLPKLEELDLR----GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQ 278
Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSS 262
L+ L L P+ L + I+ + + L + +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323
Score = 49.2 bits (118), Expect = 5e-06
Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 18/146 (12%)
Query: 757 NTNVVDCSEQQISTVPPRIPMDA----THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNS 811
N + + + + + + L P+ R ++ + ++ +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ--AFRLSHLQHMTIDAA 114
Query: 812 QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQE-NRIEYI------ 864
+ + + + L+ L L N + +L +L EL ++ + +
Sbjct: 115 GLMELPDTMQQ-FAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 865 --ANGTFNALISLQVLQLDGNRLKSF 888
A+G L++LQ L+L+ ++S
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSL 198
Score = 34.5 bits (80), Expect = 0.23
Identities = 12/111 (10%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 780 THVYLDGNTFKTIPNHVFIGR-KNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLEN-NL 836
+ + + + I + L + + + F G + L+ L L++ +
Sbjct: 209 KSLKIRNSPLSALGPA--IHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSN 265
Query: 837 ITHFYGYEFDNLEKLSELYLQEN-RIEYIANGTFNALISLQVLQLDGNRLK 886
+ + L +L +L L+ + + + L + ++ + +
Sbjct: 266 LLTLPL-DIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQA 314
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 114 bits (288), Expect = 2e-28
Identities = 53/270 (19%), Positives = 98/270 (36%), Gaps = 39/270 (14%)
Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
R I + + L N L + + + + L + N+ + ++
Sbjct: 4 QRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG- 58
Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
+ + LKEL LS N I ++ S L +L L+ L + N++ + L +L L
Sbjct: 59 -MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---L 113
Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
+N + + S L L +LE+L++ NK+ I + +L + L N +T+ G
Sbjct: 114 DNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG-- 167
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY--EIKDGLSIKNLDA 582
L +L + W+D+ G + Y E+ ++K+ D
Sbjct: 168 --LTRL-------------------KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206
Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSV 612
IS VL+ V
Sbjct: 207 RWISPYYISNGGSYVDGCVLWELPVYTDEV 236
Score = 102 bits (255), Expect = 5e-24
Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 14/248 (5%)
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
+ + + + + +L ++ ++ + EL ++ + + I +
Sbjct: 1 ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA 57
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
+ L +L L N I +LS L +L LE L++++N++ + + L+
Sbjct: 58 G--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN---GIPSACLSR 110
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
+ LD+N L D + +L L L++ N L L+ LD+HGN I++
Sbjct: 111 LFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIY 629
+K + +D + + + P + + + + P+ + + +
Sbjct: 170 RLK---KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226
Query: 630 ANDITKLD 637
D
Sbjct: 227 WELPVYTD 234
Score = 98.9 bits (247), Expect = 6e-23
Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 40/278 (14%)
Query: 132 NISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
+I I + D LAN NL + S+ D+ +
Sbjct: 2 SIQRPTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQKELSG----------------- 42
Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
++ + ++ +++L +G+ F L+ LHL +N+IS ++P L+ L L+++ N
Sbjct: 43 --VQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95
Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
L +L G+ +S ++ N L + L+ L +L + +N L
Sbjct: 96 RLKNL-NGI--PSACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLK----SIVML 146
Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
L +L +L+L NE+T L + +DL LY +T+
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204
Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
+ R I+ + + + L V D ++K
Sbjct: 205 DGRW--ISPYYISNGGSYVDGCVLWELPVYTDEVSYKF 240
Score = 92.8 bits (231), Expect = 9e-21
Identities = 44/253 (17%), Positives = 82/253 (32%), Gaps = 18/253 (7%)
Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS 267
+L ++ + LS ++ N ++++ SL ++
Sbjct: 11 QVFPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLK 66
Query: 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
E++ N + +LS L +L L ++ N + I L L L NNEL
Sbjct: 67 ELHLSHNQISDLSP--LKDLTKLEELSVNRNR-----LKNLNGIPSACLSRLFLDNNELR 119
Query: 328 RIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
D+ L L+ L +RNN + I L L + L N I + L
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKK 173
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
++ + L+ VN K + + P +S +
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYYISNGGSYVDGCVLWELPVY 232
Query: 448 IENGSFKNLQQLT 460
+ S+K + +
Sbjct: 233 TDEVSYKFSEYIN 245
Score = 59.7 bits (145), Expect = 1e-09
Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 15/174 (8%)
Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
+ +Q ++ + + + + D + +++ N+ L+++++QI +
Sbjct: 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-- 80
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L+ L+ L + N + + G L L+L N + + L +L++L +
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRDTDS--LIHLKNLEILSI 135
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQELQTWIIDNSNKVKD 932
N+LKS + L + L N + L+++ + K +
Sbjct: 136 RNNKLKSIVMLGFLSK--LEVLDLHGNEITNTGGLTRLKKVNWIDLTG-QKCVN 186
Score = 57.7 bits (140), Expect = 6e-09
Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 39/186 (20%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
Q +L+EL +S+ ++ +L L L+ L ++ ++ K L+ +
Sbjct: 57 AGMQFFTNLKELHLSHNQISDL--SPLKDLTKLEEL-----SVNRNRLKNLN----GIPS 105
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
L L + ++ ++ L N++ L++ N ++ I L
Sbjct: 106 AC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVML---------------- 146
Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
L +LDL N++ + G+T+ +++ + L + L I
Sbjct: 147 ---GFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVK---YQPELYI 197
Query: 245 LNISSN 250
N +
Sbjct: 198 TNTVKD 203
Score = 49.6 bits (119), Expect = 3e-06
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 809 NNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGT 868
+ I + GL++ +L +T L + + I+ +A
Sbjct: 5 RPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG-- 58
Query: 869 FNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
+L+ L L N++ T L ++ + N
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDLTK--LEELSVNRN 95
Score = 29.6 bits (67), Expect = 5.5
Identities = 10/101 (9%), Positives = 27/101 (26%), Gaps = 5/101 (4%)
Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
++ I + + + N K+I + L ++ ++I
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG-- 167
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
L + + L + L + + + R
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human,
TIR domain, TOLL like receptor adaptor domain, innate
immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Length = 160
Score = 110 bits (276), Expect = 6e-28
Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 44/166 (26%)
Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
P D +FV + ++ +LE N +LC+ RD+ + +
Sbjct: 25 PSDIQFVQE-MIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASEL---------------- 67
Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
+ RR+++V++ ++LQ++ + A+ + +L+
Sbjct: 68 ------------------IEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLI 109
Query: 1155 LVEENIVPEAESDIELKPYLKSCMKIRWG----EKRFWERLRYAMP 1196
++ + + E L+ + + FW RL A+
Sbjct: 110 PIKYKAMKK-----EFPSILRFITVCDYTNPCTKSWFWTRLAKALS 150
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 109 bits (275), Expect = 3e-27
Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 6/178 (3%)
Query: 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
+ L + T + L + L+N +T + + ++ L + N
Sbjct: 25 YLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN 82
Query: 355 DNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE 414
L NL + + + +GL L+ L +S++ + +
Sbjct: 83 --PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140
Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
+DLS N + L LP LK+L++ + + ++ +L L IG
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 96.6 bits (241), Expect = 8e-23
Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL 345
++ L + L++ +++ D T + L ++N T + L L+RL +
Sbjct: 42 QMNSLTYITLANINVT----DLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRI 95
Query: 346 RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKA 405
+ + L +L + +S + N L ++ + LS N + D
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMP 154
Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
K LK L++ + + + + + P L L I +
Sbjct: 155 LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGKK 197
Score = 96.2 bits (240), Expect = 1e-22
Identities = 33/195 (16%), Positives = 75/195 (38%), Gaps = 13/195 (6%)
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
+ I D+ F + N L ++ +IT + L+ +TL+N + ++
Sbjct: 11 SQDNVNIPDSTFKAYLNG---LLGQSSTANIT---EAQMNSLTYITLANINVTDL--TGI 62
Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
+ +K+L +++ + +S L L+ L + ++ + + L LT L +
Sbjct: 63 EYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIE-IGTFEKNKRLAAIRLDSNFLTDINGVFT 525
+ + + LP + ++LS N I I + L ++ + + + D G
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDYRG-IE 178
Query: 526 YLAQLLWLNLSENHL 540
+L L +
Sbjct: 179 DFPKLNQLYAFSQTI 193
Score = 87.3 bits (217), Expect = 1e-19
Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 54/232 (23%)
Query: 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
+ + S+ +I+ + ++ + L+ ++ D+ + +A
Sbjct: 20 STFKAYLNGLLGQSSTANIT---EAQMNSLTYITLANINVTDLTGIEYAHN--------- 67
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
++ L +++ +Y+ I+ L+ L + +++ L+SL
Sbjct: 68 ----------IKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114
Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
+L+IS + +++I + L ++ +DLS N +
Sbjct: 115 TLLDISHSAH---------DDSILTKI---------------NTLPKVNSIDLSYNGAIT 150
Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
D L L LN+ + + +D L +L + +IG +
Sbjct: 151 ---DIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197
Score = 85.4 bits (212), Expect = 6e-19
Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 34/220 (15%)
Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK 454
+ VNI FK L ++ I +++ L + L ++ + +
Sbjct: 11 SQDNVNIPDSTFKA---YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDLTG--IE 63
Query: 455 NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDS 514
+ DL + + + N + + L +LE L + + +I L + +
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 515 NFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKD 573
+ D L ++ ++LS N I+ + +K
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN---------------------GAITDIMP---LKT 157
Query: 574 GLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVK 613
+K+L+ + + + + + L+ + I K
Sbjct: 158 LPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197
Score = 68.4 bits (168), Expect = 4e-13
Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 32/199 (16%)
Query: 57 LLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLD 116
L SS + + SL + ++N + +L N+K LTIN + +
Sbjct: 30 LGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT-------N 80
Query: 117 LVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176
P + GL L+ L I ++ S L ++ L++S ++ D
Sbjct: 81 YNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI------ 132
Query: 177 AESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF 236
+ + +DLS+N + D + L++L+++ + +
Sbjct: 133 -----------NTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYRG--I 177
Query: 237 VALSSLRILNISSNHLVSL 255
L L S +
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196
Score = 58.0 bits (141), Expect = 1e-09
Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 11/136 (8%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
K L+ + S I T ++SL + L N +T G + + +L +
Sbjct: 23 KAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC----ATL 916
+ L +L+ L++ G + S + +L+ + L + + ++ S TL
Sbjct: 78 ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 917 QELQTWIIDNSNKVKD 932
++ + + + + D
Sbjct: 136 PKVNSIDLSYNGAITD 151
Score = 56.1 bits (136), Expect = 8e-09
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 7/129 (5%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
T++ L + N+ L +NN +GLS+L+ L + +T
Sbjct: 47 TYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTS 102
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN-RLKSFRAFDLNTNSM 898
L L+ L + + + N L + + L N +
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-- 160
Query: 899 LRKVYLGNN 907
L+ + + +
Sbjct: 161 LKSLNIQFD 169
Score = 47.6 bits (114), Expect = 6e-06
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
+L ++ + ++ L I+ +IK+L ++ + +S +++E L I +
Sbjct: 45 SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101
Query: 611 SVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
S K ++L +DI + LT + + L N
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-----TLPKVNSIDLSYNG 147
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A
{Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Length = 149
Score = 107 bits (269), Expect = 4e-27
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
+D +V +V ELE+ NP ++L LH RD H +
Sbjct: 14 ERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWII---------------------- 51
Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
D +I++ E S + + VL++NF+++EW + + + +
Sbjct: 52 -------------DNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAI 98
Query: 1155 LVE-ENIVPEA--ESDIELKPYLKSCMKIRW-----GEKRFWERLRYAMPT 1197
L+ E I +A + +L+ + + + W + FW LR A+ +
Sbjct: 99 LILLEPIEKKAIPQRFXKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS 149
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 106 bits (266), Expect = 4e-25
Identities = 60/291 (20%), Positives = 97/291 (33%), Gaps = 42/291 (14%)
Query: 173 RRASAESNSGEKIECSGGMDLRILDLSHNKL--RTLGDYSGITKFRRLQNLHLENNEISQ 230
+R E++ G+ + + L+ L + ++ R L + LQ L LEN E++
Sbjct: 50 KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109
Query: 231 IAPNAFVALS--SLRILNISSNHLVSLPEGLFS----SCRDISEIYAQKNSLVELSRGLF 284
AP + + L ILN+ + + L + + + + S
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169
Query: 285 HKLEQLLVLDLSSNHLSSNH--IDETTFIGLIRLIILNLSNNELTRID---AKTFKDLVF 339
L LDLS N I + L +L L N + + V
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229
Query: 340 LQRLDLRNNSIGYIEDN-AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
LQ LDL +NS+ + L+++ LS + + L
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---------------- 273
Query: 399 VNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
+ L LDLS N + PS ELP + L L N E
Sbjct: 274 -----------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDSE 312
Score = 104 bits (260), Expect = 3e-24
Identities = 52/301 (17%), Positives = 101/301 (33%), Gaps = 34/301 (11%)
Query: 86 LPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDV 145
V+++ G R+L+ L + + + D + D+ ++ L + ++ + S +
Sbjct: 34 ADVELYGGGRSLEYL-LKRVDTEADLGQFTDI-------IKSLSLKRLTVRAARIPSRIL 85
Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
F +L + L ++ +++ G A + DL IL+L + T
Sbjct: 86 FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP----------DLNILNLRNVSWAT 135
Query: 206 LGDYSG---ITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-------SL 255
+ L+ L + + +L L++S N + +L
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
F + + ++ A + + L QL LDLS N L + +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQ 254
Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
L LNLS L ++ L LDL N + L + + L N
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSPDELP--QVGNLSLKGNPFL 309
Query: 376 H 376
Sbjct: 310 D 310
Score = 96.5 bits (240), Expect = 1e-21
Identities = 56/280 (20%), Positives = 88/280 (31%), Gaps = 21/280 (7%)
Query: 277 VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD 336
VEL G L +D ++ D + L RL + A
Sbjct: 36 VELYGGGRSLEYLLKRVDTEAD--LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93
Query: 337 LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG------LYVLSK 390
+ LQ L L N + L L+ + T + L
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-----ALSELPFLKTLDLGENQ- 444
L+++ +N + + AL LDLS N + + P L+ L L
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 445 --ISKIENGSFKNLQQLTDLRLVDNNIGNL-SSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
S + + QL L L N++ + + L LNLS + Q+ G
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273
Query: 502 EKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541
K L+ + L N L L Q+ L+L N +
Sbjct: 274 AK---LSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFL 309
Score = 92.3 bits (229), Expect = 3e-20
Identities = 52/260 (20%), Positives = 84/260 (32%), Gaps = 50/260 (19%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
L+EL + N ++ +N RN+ W L+VL
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG-LKVL 154
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
+I+ ++ + S + + TL+LS N L A+ C
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--------------CPLKF 200
Query: 192 D-LRILDLSHNKLRTLGDYSG--ITKFRRLQNLHLENNEISQI-APNAFVALSSLRILNI 247
L++L L + + T +LQ L L +N + + S L LN+
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260
Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
S L +P+GL + L VLDLS N L N
Sbjct: 261 SFTGLKQVPKGLPAK---------------------------LSVLDLSYNRLDRN---- 289
Query: 308 TTFIGLIRLIILNLSNNELT 327
+ L ++ L+L N
Sbjct: 290 PSPDELPQVGNLSLKGNPFL 309
Score = 84.6 bits (209), Expect = 1e-17
Identities = 41/229 (17%), Positives = 72/229 (31%), Gaps = 23/229 (10%)
Query: 25 NLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV 84
NL G L DL LN+ + D+ + L+ L I+ +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNI-LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 85 ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD 144
+ L L ++ ++ L P L+ L + N +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 145 VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR 204
+ + +Q L+LS NS+RD C L L+LS L+
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAA----------------GAPSCDWPSQLNSLNLSFTGLK 266
Query: 205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
+ G+ +L L L N + + L + L++ N +
Sbjct: 267 QV--PKGL--PAKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFL 309
Score = 68.4 bits (167), Expect = 3e-12
Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 24/279 (8%)
Query: 377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKA-FKNCSALKELDLSSNAIVEI----PSALSE 431
L+ G L L + ++ +LK L + + I +
Sbjct: 34 ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93
Query: 432 LPFLKTLDLGENQISKI--ENGSFKNLQQLTDLRLVDNNIGN----LSSGMLYELPSLEV 485
+ L+ L L +++ L L L + + L+ + P L+V
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY-----LAQLLWLNLSENHL 540
L++++ L+ + L N G+ + L L L +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 541 -----VWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSI 595
V A L+ LD+ N + + +L+ S + ++ + +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GL 272
Query: 596 PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT 634
P + VL ++ N + + + + N
Sbjct: 273 PAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFL 309
Score = 47.6 bits (113), Expect = 1e-05
Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 12/131 (9%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT-------HFYGYEFDNLEKLSE 853
+ L + + + +L L L +N +F L+ L+
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 854 LYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNN----P 908
+ + A + LQ L L N L+ S L + L
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 909 FSCSCATLQEL 919
A L L
Sbjct: 269 PKGLPAKLSVL 279
Score = 47.2 bits (112), Expect = 2e-05
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 809 NNSQIEVILNQTFNGLSSLQVLHL-ENNLITHFYGYEFDNLEKLSELYLQENRIEYIANG 867
+ + LQ L L N+L D +L+ L L ++ + G
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271
Query: 868 TFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
L VL L NRL + D + + L NPF
Sbjct: 272 LPA---KLSVLDLSYNRLDRNPSPDELPQ--VGNLSLKGNPF 308
Score = 45.7 bits (108), Expect = 6e-05
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 9/107 (8%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYV----NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
L +T + L +NS + + + S L L+L +
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
L L L NR++ + + L + L L GN
Sbjct: 267 QVPKGLPAKLS---VLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308
Score = 42.6 bits (100), Expect = 7e-04
Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 14/141 (9%)
Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN----GLSSLQVLHLENNL 836
++ + G + ++ L + N L+VL +
Sbjct: 104 NLEVTGTAPPPLLEATG---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 837 ITHFYGYEFDNLEKLSELYLQENRI-------EYIANGTFNALISLQVLQLDGNRLKSFR 889
+F + LS L L +N + F L L +
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220
Query: 890 AFDLNTNSMLRKVYLGNNPFS 910
+ L+ + L +N
Sbjct: 221 SALAAARVQLQGLDLSHNSLR 241
Score = 39.5 bits (92), Expect = 0.005
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 780 THVYLDGNTFKTIPNHV-FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
+ L N+ + + SL ++ + ++ + + L VL L N +
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD 287
Query: 839 HFYGYEFDNLEKLSELYLQENRI 861
D L ++ L L+ N
Sbjct: 288 RN--PSPDELPQVGNLSLKGNPF 308
Score = 32.9 bits (75), Expect = 0.57
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 8/134 (5%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
D F I + + R + + + + + L G+S LQ L LEN +T
Sbjct: 55 EADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR--VLGISGLQELTLENLEVTGTAP 112
Query: 843 YEFDNLEKLSELYLQENRIEYIANGTFNALI------SLQVLQLDGNRLKSFRAFDLNTN 896
L + + + A + L+VL + +F +
Sbjct: 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172
Query: 897 SMLRKVYLGNNPFS 910
L + L +NP
Sbjct: 173 PALSTLDLSDNPEL 186
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 105 bits (264), Expect = 5e-25
Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 55/244 (22%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPM------------------------- 777
P + T + ++ ++ + +
Sbjct: 12 IFPDDAFA------ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65
Query: 778 --------------------DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL 817
+ T++ L GN +++PN VF N+ L + +Q++ +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 818 NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
+ F+ L++L L+L +N + FD L L+EL L N+++ + G F+ L L+
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 878 LQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
L+L N+LKS FD T+ L+ ++L +NP+ C+C ++ L WI +S V++
Sbjct: 186 LRLYQNQLKSVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAG 243
Query: 936 ISCV 939
Sbjct: 244 SVAP 247
Score = 98.9 bits (247), Expect = 8e-23
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 13/221 (5%)
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
+S+ + DD F NL + S+ D T + + I+ G+
Sbjct: 4 TVSTPIKQIFPDDAFAET---IKANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGI 59
Query: 192 D----LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
+R L L NKL + +T L L L N++ + F L++L+ L +
Sbjct: 60 QYLPNVRYLALGGNKLHDISALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
N L SLP+G+F +++ + N L L +G+F KL L LDLS N L S + E
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPE 174
Query: 308 TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
F L +L L L N+L + F L LQ + L +N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 95.5 bits (238), Expect = 1e-21
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 7/198 (3%)
Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
NL +T +L + ++ N+ I ++ L N+ + L N++H I+
Sbjct: 24 ANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS 79
Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKT 437
A L L+ L L+ N L ++ + F + LKEL L N + +P + +L L
Sbjct: 80 A--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
L+L NQ+ + G F L LT+L L N + +L G+ +L L+ L L +N++ +
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 498 IGTFEKNKRLAAIRLDSN 515
G F++ L I L N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 93.9 bits (234), Expect = 4e-21
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
L + + N L + ++ +N+ + ++ + + ++ L L N + +I
Sbjct: 23 KANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI 78
Query: 426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
AL EL L L L NQ+ + NG F L L +L LV+N + +L G+ +L +L
Sbjct: 79 S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
LNL+ N++ + G F+K L + L N L + GVF L QL L L +N L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 92.0 bits (229), Expect = 2e-20
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
+ +L+ S+ L ++ I + + I + L + L L N L +
Sbjct: 22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
I A K + L L L+ N + +P+ +L LK L L ENQ+ + +G F L L
Sbjct: 78 I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
T L L N + +L G+ +L +L L+LS N++ + G F+K +L +RL N L
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 520 I-NGVFTYLAQLLWLNLSEN 538
+ +GVF L L ++ L +N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
Score = 90.1 bits (224), Expect = 8e-20
Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 33/228 (14%)
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
N+ + + I +I A + + + L + L L N L
Sbjct: 20 ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKL 75
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
L L L L+ N+L + F L L+ L L N + + D F
Sbjct: 76 HDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
L NL + L+ N++ + +F+ KLT L ELDLS N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFD------KLT------------------NLTELDLSYN 167
Query: 421 AIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+ +P +L LK L L +NQ+ + +G F L L + L DN
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 86.6 bits (215), Expect = 1e-18
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
+ S P + L + ++ + NNS I+ + Q
Sbjct: 3 ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QG 58
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L +++ L L N + L L+ L L N+++ + NG F+ L +L+ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 881 DGNRLKSFRA--FDLNTNSMLRKVYLGNN 907
N+L+S FD TN L + L +N
Sbjct: 117 VENQLQSLPDGVFDKLTN--LTYLNLAHN 143
Score = 80.4 bits (199), Expect = 1e-16
Identities = 65/325 (20%), Positives = 112/325 (34%), Gaps = 95/325 (29%)
Query: 399 VNIDSKAFK----NCSA-LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
+ + + + + A + +L ++ + +EL + + + I ++
Sbjct: 3 ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GI 59
Query: 454 KNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
+ L + L L N + ++ L EL +L L L+ N++ + G F+K L + L
Sbjct: 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 514 SNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSLN 566
N L + +GVF L L +LNL+ N L ++ G NL LD+ N + SL
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQ----SLPKGVFDKLTNLTELDLSYNQLQSL- 172
Query: 567 NYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK-SNLAR 625
P FDK + L
Sbjct: 173 -----------------------------------------------PEGVFDKLTQL-- 183
Query: 626 VDIYANDITKLDLTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIIN 675
L L +LK VP +L +L NP+DC C +W IN
Sbjct: 184 --------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW---IN 232
Query: 676 NNTSPSMERQYPKIMDLDNVVCKMT 700
+ + R + D+ C +
Sbjct: 233 KH--SGVVRNSAGSVAPDSAKCSGS 255
Score = 63.1 bits (154), Expect = 9e-11
Identities = 49/269 (18%), Positives = 90/269 (33%), Gaps = 58/269 (21%)
Query: 7 NCSWKMENESMNRISV-TCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTK 65
S ++ + T N K ++ + I ++ + + +
Sbjct: 4 TVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV------Q 57
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
Q + ++ L + KL ++ L NL L + LQ L G D L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQ-------SLPNGVFDKL 108
Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
L+ L + + ++S+ D VF L N+ LNL+ N ++ +
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------------ 150
Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
+ D K L L L N++ + F L+ L+ L
Sbjct: 151 --------GVFD----------------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKN 274
+ N L S+P+G+F + I+ N
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 46.5 bits (111), Expect = 3e-05
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
F + +L L +++ +L LP VF L NL L ++ LQ L G D L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------SLPEGVFDKLT 181
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL-GFAVRRASAESNS 181
+L+ L + + +KS+ D VF L ++Q + L N + I L + + + NS
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 241
Query: 182 G-----EKIECSGG 190
+ +CSG
Sbjct: 242 AGSVAPDSAKCSGS 255
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity,
immune response, leucine-rich repeat, glycoprotein,
transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Length = 178
Score = 102 bits (255), Expect = 6e-25
Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 55/208 (26%)
Query: 1004 FRVWLYTKYGIRLFNFKATSSKHFGEDREKL--------PKDEEFVLQSIVAELEHGNPS 1055
V L T F++ + R D +V ++ LE + S
Sbjct: 9 SGVDLGT----ENLYFQSMKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGS 64
Query: 1056 YQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115
+CL+ + ++ E
Sbjct: 65 ILICLYESYFDPGKSISEN-----------------------------------IVSFIE 89
Query: 1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE---AESDIELKP 1172
S + I VL+ NF+Q EW +F A H + ++L+ +P +LK
Sbjct: 90 KSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKA 149
Query: 1173 YLKSCMKIRWGEKR-----FWERLRYAM 1195
L+ + W + R FW LR A+
Sbjct: 150 LLEKKAYLEWPKDRRKCGLFWANLRAAI 177
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo sapiens}
PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 99.8 bits (249), Expect = 2e-24
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 43/163 (26%)
Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
+D +V+ LE S + L RD + +
Sbjct: 19 EEDLVAAQD-LVSYLEGSTASLRCFLQLRDATPGGAIVSE-------------------- 57
Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
L +A +S +L++T FLQ W + A+ EA + +
Sbjct: 58 ---------------LCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIP 102
Query: 1155 LVEENIVPEAESDIELKPYLKSCMKIRW-GEKRFWERLRYAMP 1196
L+ S P L+ + G + +++ A+
Sbjct: 103 LLSG------LSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVM 139
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 102 bits (256), Expect = 3e-23
Identities = 59/330 (17%), Positives = 102/330 (30%), Gaps = 76/330 (23%)
Query: 293 LDLSSNHLSSNHIDETTFIGLIR-------LIILNLSNNELTRIDAKTF----KDLVFLQ 341
+ L + I + + + LS N + A+ L+
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 342 RLDLRNNSIGYIED----------NAFLSLYNLHTIYLSENRIHHITA-HLFNGLYV--- 387
+ + G ++D A L LHT+ LS+N L + L
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 388 LSKLTLSNN-------------LLVNIDSKAFKNCSALKELDLSSNAI-----VEIPSAL 429
L L L NN L +K KN L+ + N + E
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 430 SELPFLKTLDLGENQI-----SKIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYE 479
L T+ + +N I + Q+L L L DN + L+ L
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKS 242
Query: 480 LPSLEVLNLSKNKIHQ---IEIG---TFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWL 533
P+L L L+ + + + +N L +RL N + + V L ++
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAV-RTLKTVIDE 300
Query: 534 NLSENHLVWFDYAMVPGNLKWLDIHGNYIS 563
+ +L +L+++GN S
Sbjct: 301 KMP--------------DLLFLELNGNRFS 316
Score = 98.6 bits (246), Expect = 7e-22
Identities = 61/375 (16%), Positives = 110/375 (29%), Gaps = 89/375 (23%)
Query: 193 LRILDLSHNKLRTLGD---YSGITKFRRLQNLHLENNEIS-----QIAPNAFVALSSLRI 244
+ L + + T + ++ + + ++ + L N I ++ + L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLEI 64
Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
S + + + + R + + + L + LS N
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV-------------------RLSDNA 105
Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG------------- 351
T LI + + L+ L L NN +G
Sbjct: 106 FGPTAQEPLIDFLSKHTP-----------------LEHLYLHNNGLGPQAGAKIARALQE 148
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITA-HLFNGLYV---LSKLTLSNNLL-----VNID 402
+ + L +I NR+ + + L + + N + ++
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 403 SKAFKNCSALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQISKI------ENG 451
+ C LK LDL N + AL P L+ L L + +S +
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268
Query: 452 SFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNKI-----HQIEIG-T 500
S L LRL N I L + + ++P L L L+ N+ EI
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328
Query: 501 FEKNKRLAAIRLDSN 515
F R LD
Sbjct: 329 FSTRGRGELDELDDM 343
Score = 82.8 bits (205), Expect = 1e-16
Identities = 60/383 (15%), Positives = 109/383 (28%), Gaps = 113/383 (29%)
Query: 319 LNLSNNELTRIDAKTF----KDLVFLQRLDLRNNSIG-----YIEDNAFLSLYNLHTIYL 369
+L + +T D K+ + ++ + L N+IG ++ + S +L
Sbjct: 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE-NIASKKDLEIAEF 67
Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI-----VE 424
S+ + + L +L + A C L + LS NA
Sbjct: 68 SDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPTAQEP 113
Query: 425 IPSALSELPFLKTLDLGENQIS-------------KIENGSFKNLQQLTDLRLVDNNIGN 471
+ LS+ L+ L L N + N KN L + N + N
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173
Query: 472 LS----SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
S + L + + +N I G+ L
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRP-------------------------EGIEHLL 208
Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI 587
+ L LK LD+ N + G S
Sbjct: 209 LEGLAYC---------------QELKVLDLQDNTFTH--------LGSS----------- 234
Query: 588 LEISE-LSIPNSVEVLFINNNLIKS------VKPHTFFDKSNLARVDIYANDITKLDLTA 640
++ L ++ L +N+ L+ + V + + L + + N+I +
Sbjct: 235 -ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293
Query: 641 LRLKPVPQNKTLPEFYLGGNPFD 663
L+ + L L GN F
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFS 316
Score = 77.1 bits (190), Expect = 8e-15
Identities = 47/325 (14%), Positives = 93/325 (28%), Gaps = 86/325 (26%)
Query: 388 LSKLTLSNNLLVNIDSKAF----KNCSALKELDLSSNAI-----VEIPSALSELPFLKTL 438
+ +L + + D K+ ++KE+ LS N I + ++ L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 439 DLGENQISKIEN----------GSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLE 484
+ + ++++ + +L +RL DN G + L + LE
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 485 VLNLSKNKI-------------HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
L L N + + L +I N L + + A+
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSM-KEWAKTF 183
Query: 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHNRI 587
+ L + + N I + + +GL +K LD N
Sbjct: 184 QSH---------------RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Query: 588 -----LEISE-LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
++ L ++ L +N+ L+ A + A
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLS----------------ARGAAAVVD----AF 268
Query: 642 RLKPVPQNKTLPEFYLGGNPFDCDC 666
+N L L N + D
Sbjct: 269 S---KLENIGLQTLRLQYNEIELDA 290
Score = 73.2 bits (180), Expect = 1e-13
Identities = 63/416 (15%), Positives = 118/416 (28%), Gaps = 99/416 (23%)
Query: 70 IYSLEELKISNCKL----VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
+S+E + + + V ++K + ++ + + ++ L S L
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 126 RELQVLNISSSNIKSISDDVFCSLA-------NIQTLNLSRNSIRDIDTLGFAVRRASAE 178
+ +I + +K + L + T+ LS N+
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI---DFLS 119
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
++ L L L +N LG +G R LQ L + +
Sbjct: 120 KHT----------PLEHLYLHNNG---LGPQAGAKIARALQELAVNKKAKN--------- 157
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
LR + N L + S ++ ++ + L + + N
Sbjct: 158 APPLRSIICGRNRLEN------GSMKEWAKTFQSHRLLHT--------------VKMVQN 197
Query: 299 HLSSNHIDETTFIGLIR---LIILNLSNNELTRIDAKTF----KDLVFLQRLDLRNNSIG 351
+ I+ GL L +L+L +N T + + K L+ L L + +
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
Query: 352 -----YIEDNAFLSLYN--LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
+ D AF L N L T+ L N I
Sbjct: 258 ARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTL--------------------KT 296
Query: 405 AFK-NCSALKELDLSSNAI-------VEIPSALSELPFLKTLDLGENQISKIENGS 452
L L+L+ N EI S + +L + + E
Sbjct: 297 VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEE 352
Score = 41.6 bits (98), Expect = 0.001
Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 15/145 (10%)
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITH----FYGYEFDNLEKLSELYLQENRI-----EY 863
IE +L + L+VL L++N TH + L EL L + +
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263
Query: 864 IANG-TFNALISLQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYLGNNPFSCSCATLQ 917
+ + + I LQ L+L N ++ L L + L N FS +
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323
Query: 918 ELQTWIIDNSNKVKDGLDISCVIDE 942
E++ D LD + +
Sbjct: 324 EIREVFSTRGRGELDELDDMEELTD 348
Score = 39.3 bits (92), Expect = 0.007
Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 31/187 (16%)
Query: 58 LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS-GLRNLKRLTINTRNLQW----DKS 112
L K +N L + +L + ++ ++ + L T + +
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH--TVKMVQNGIRPEG 203
Query: 113 KKLDLVPGSLDGLRELQVLNISSSNI-----KSISDDVFCSLANIQTLNLSRNSIRDIDT 167
+ L+ G L +EL+VL++ + +++ S N++ L L+ +
Sbjct: 204 IEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGA 261
Query: 168 LGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGI-----TKFRRLQNLH 222
+ + L+ L L +N++ + K L L
Sbjct: 262 AAVV-----------DAFSKLENIGLQTLRLQYNEIELDA-VRTLKTVIDEKMPDLLFLE 309
Query: 223 LENNEIS 229
L N S
Sbjct: 310 LNGNRFS 316
Score = 37.8 bits (88), Expect = 0.022
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 24/113 (21%)
Query: 825 SSLQVLHLENN-------------LITHFYGYEFDNLEKLSELYLQENRIE-----YIAN 866
+ L+ L+L NN L + N L + NR+E A
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 867 GTFNALISLQVLQLDGNRL-----KSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
F + L +++ N + + L L+ + L +N F+ +
Sbjct: 182 T-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233
Score = 32.4 bits (74), Expect = 0.94
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 17/116 (14%)
Query: 814 EVILNQTFNGLSSLQVLHLENNLIT----HFYGYEFDNLEKLSELYLQENRI------EY 863
E+ +N+ L+ + N + + F + L + + +N I
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 864 IANGTFNALISLQVLQLDGNRL-----KSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
+ G L+VL L N + A L + LR++ L + S A
Sbjct: 208 LLEG-LAYCQELKVLDLQDNTFTHLGSSAL-AIALKSWPNLRELGLNDCLLSARGA 261
Score = 30.8 bits (70), Expect = 3.6
Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 29/119 (24%)
Query: 825 SSLQVLHLENNLITHFYGYEFDNLE----------KLSELYLQENRI-----EYIANGTF 869
L++ + + L KL + L +N E + +
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-L 118
Query: 870 NALISLQVLQLDGNRL-------------KSFRAFDLNTNSMLRKVYLGNNPFSCSCAT 915
+ L+ L L N L + LR + G N
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177
Score = 30.5 bits (69), Expect = 4.8
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 31/124 (25%)
Query: 826 SLQVLHLENNLIT----HFYGYEFDNLEKLSELYLQENRI-----EYIANGTFNALISLQ 876
S++ L+ + IT + + E+ L N I +++ + L+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLE 63
Query: 877 VLQLDGNRLKSFRAFD----------LNTNSMLRKVYLGNNPFS-----------CSCAT 915
+ + + L L V L +N F
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 916 LQEL 919
L+ L
Sbjct: 124 LEHL 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 95.4 bits (238), Expect = 1e-22
Identities = 50/192 (26%), Positives = 72/192 (37%), Gaps = 58/192 (30%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + VDCS + +++VP IP +YL N + V
Sbjct: 3 CPSQCSC------SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGV------- 49
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
FD L +L+ L L N++
Sbjct: 50 -----------------------------------------FDRLTQLTRLDLDNNQLTV 68
Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
+ G F+ L L L L+ N+LKS AFD N S L ++L NNP+ C+C+ + L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD-NLKS-LTHIWLLNNPWDCACSDILYLSR 126
Query: 922 WIIDNSNKVKDG 933
WI + V
Sbjct: 127 WISQHPGLVFGY 138
Score = 57.2 bits (139), Expect = 2e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
CS +D S ++ +P+ + + L L +NQI+K+E G F L QLT L L +N
Sbjct: 9 CSG-TTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ L +G+ +L L L+L+ N++ I G F+ K L I L +N
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 54.2 bits (131), Expect = 2e-08
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
VL L N ++ ++ F L +L L+L NN+LT + A F L L +L L +N +
Sbjct: 34 VLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
Query: 352 YIEDNAFLSLYNLHTIYLSEN 372
I AF +L +L I+L N
Sbjct: 92 SIPRGAFDNLKSLTHIWLLNN 112
Score = 52.2 bits (126), Expect = 1e-07
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L+L +N+I+++ P F L+ L L++ +N L LP G+F ++++ N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 279 LSRGLFHKLEQLLVLDLSSN 298
+ RG F L+ L + L +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 49.2 bits (118), Expect = 1e-06
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
++ ++L + N + L G+F ++ + N L L G+F KL QL L L+ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 300 LSSNHIDETTFIGLIRLIILNLSNN 324
L S I F L L + L NN
Sbjct: 90 LKS--IPRGAFDNLKSLTHIWLLNN 112
Score = 48.8 bits (117), Expect = 2e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
Q L L +N I +E F L L + L N++ + A +F+ L L++L+L++N L +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 401 IDSKAFKNCSALKELDLSSN 420
I AF N +L + L +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 48.0 bits (115), Expect = 3e-06
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+ + L + + ++ +L VF L L RL ++ L L G D L +L L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-------VLPAGVFDKLTQLTQL 83
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL-GFAVRRASAESNSG---- 182
+++ + +KSI F +L ++ + L N + DI L + +
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDP 143
Query: 183 EKIECSGG 190
+ CSG
Sbjct: 144 DSARCSGT 151
Score = 47.2 bits (113), Expect = 5e-06
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
++L L N++ L G + +T+ L L L+NN+++ + F L+ L L+++
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQ---LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKN 274
N L S+P G F + + ++ I+ N
Sbjct: 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 45.3 bits (108), Expect = 2e-05
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
+ +VL L N+I ++E G F++ +L + LD+N LT + GVF L QL L+L++N L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 43.0 bits (102), Expect = 1e-04
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKL---------DLTALR-- 642
IP + +VL++ +N I + FD+ + L R+D+ N +T L LT L
Sbjct: 28 IPTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 643 ---LKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKI 689
LK +P+ K+L +L NP+DC CS W I+ +
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW---ISQHPGLVFGYLN--- 140
Query: 690 MDLDNVVCKMTYSRGSTHLPA-SEAAPSQYLCP 721
+D D+ C S +T + A +EA+ S CP
Sbjct: 141 LDPDSARC----SGTNTPVRAVTEASTSPSKCP 169
Score = 39.5 bits (93), Expect = 0.002
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
K L T+ L ++ L PG D L +L L++ ++ + + VF L
Sbjct: 19 KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 151 NIQTLNLSRNSIRDI 165
+ L+L+ N ++ I
Sbjct: 79 QLTQLSLNDNQLKSI 93
Score = 39.5 bits (93), Expect = 0.002
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
+YL +N+I + +F+ L L++L L NN L + + F
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-------------- 76
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L L L L +NQ+ I G+F NL+ LT + L++N
Sbjct: 77 ---------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR,
IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo
sapiens}
Length = 159
Score = 95.2 bits (236), Expect = 1e-22
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIE 1083
+K + + +EE I+ ++ + Y+L + RDL Y++ V
Sbjct: 10 TKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED------VAR 63
Query: 1084 AAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIH 1143
+ S+R+I+V+T N++ ++ WS + + +
Sbjct: 64 CVDQSKRLIIVMTPNYV----------------------------VRRGWSIFELETRLR 95
Query: 1144 EALTTKTHKLVLVEENIVPEAESDI---ELKPYLKSCMKIRWG-------EKRFWERLRY 1193
L T K++L+E + + + LK +K I+W +FW+RL+Y
Sbjct: 96 NMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQY 155
Query: 1194 AMP 1196
MP
Sbjct: 156 EMP 158
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 95.2 bits (238), Expect = 1e-22
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 11/160 (6%)
Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
+ L + +L L + + L E++++ A L L
Sbjct: 5 EKSKLQEIYQELTRLKA--AVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQE 61
Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
L L + S++ L L + +L + L L+ + +
Sbjct: 62 LTRLKAA-VGELPEKSKLQEIYQELTRLKAAVG-ELPEKSKLQEIYQELTE--LKAA--V 115
Query: 312 G-LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350
G L L ELT++ +L + +
Sbjct: 116 GELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQEL 154
Score = 93.7 bits (234), Expect = 4e-22
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 9/164 (5%)
Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELTRIDAKTFKDLVFLQRLD 344
+L + L L+ + +G L L ELTR+ +L +L
Sbjct: 2 ELPEKSKLQEIYQELTR--LKAA--VGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQ 56
Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
+ ++ A L + + + A + L SKL L +
Sbjct: 57 EIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTEL-KA 113
Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI 448
A +L + ++ +A+ ELP +++ +
Sbjct: 114 AVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 90.6 bits (226), Expect = 4e-21
Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 18/166 (10%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+L + + +A+ ELP L ++++++ + L + + L+ +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQI--EIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
+ L + + ELP L ++ ++ +G + + ++ LT++
Sbjct: 61 ELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGELPE---KSKLQEIYQELTELKAAVG 116
Query: 526 YLAQLLWLNLSENHLVWFDYAMVP------GNLKWLDIHGNYISSL 565
L + L L + + ++ L
Sbjct: 117 ELPEKSKLQEIYQELT-----QLKAAVGELPDQSKQQQIYQELTDL 157
Score = 90.2 bits (225), Expect = 5e-21
Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 9/162 (5%)
Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
L + + + A + L SKL L + A +L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQ 60
Query: 421 AIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
+ + +A+ ELP L ++++++ + L + + L+ + + L + + EL
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKAA-VGEL 118
Query: 481 PSLEVLNLSKNKIHQI--EIGTFEKNKRLAAIRLDSNFLTDI 520
P L ++ Q+ +G + + LTD+
Sbjct: 119 PEKSKLQEIYQELTQLKAAVGELPD---QSKQQQIYQELTDL 157
Score = 87.9 bits (219), Expect = 5e-20
Identities = 28/196 (14%), Positives = 49/196 (25%), Gaps = 36/196 (18%)
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
L L L L + +L + L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAV-------------------------GELPEKSKLQEIYQ 37
Query: 299 HLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
L+ + E L L ELTR+ A +L +L + ++
Sbjct: 38 ELTRLKAAVGE-----LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA- 90
Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
A L + + + A + L SKL L + A +
Sbjct: 91 AVGELPEKSKLQEIYQELTELKAAVGE-LPEKSKLQEIYQELTQL-KAAVGELPDQSKQQ 148
Query: 417 LSSNAIVEIPSALSEL 432
+ ++ +A L
Sbjct: 149 QIYQELTDLKTAFERL 164
Score = 85.6 bits (213), Expect = 3e-19
Identities = 23/189 (12%), Positives = 44/189 (23%), Gaps = 33/189 (17%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+L+ +L L L +L + L + ++ L E L
Sbjct: 5 EKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTR--------LKAAVGELPEKSKL 55
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSGEKIECSGG 190
+ + L L + + +G E
Sbjct: 56 QEIYQELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVG----------------ELP-- 96
Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
+ L + +L L + + L E++Q+ A L
Sbjct: 97 -EKSKLQEIYQELTELKA--AVGELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQ 152
Query: 251 HLVSLPEGL 259
L L
Sbjct: 153 ELTDLKTAF 161
Score = 85.2 bits (212), Expect = 3e-19
Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 10/165 (6%)
Query: 214 KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
+ L E++++ A L L L L + + S++
Sbjct: 2 ELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIY 59
Query: 274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELTRIDAK 332
L L + +L + L L+ + +G L L ELT + A
Sbjct: 60 QELTRLKAAVG-ELPEKSKLQEIYQELTR--LKAA--VGELPEKSKLQEIYQELTELKA- 113
Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
+L +L + ++ A L + + +
Sbjct: 114 AVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Score = 79.8 bits (198), Expect = 3e-17
Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 33/187 (17%)
Query: 94 LRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQ 153
L +L ++L + ++ L E L + + V L
Sbjct: 3 LPEKSKLQEI--------YQELTRLKAAVGELPEKSKLQEIYQELTRLKAAV-GELPEKS 53
Query: 154 TLNLSRNSIRDI-DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
L + + +G E L + +L L +
Sbjct: 54 KLQEIYQELTRLKAAVG----------------ELPE---KSKLQEIYQELTRLKA--AV 92
Query: 213 TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272
+ L E++++ A L L L L + D S+
Sbjct: 93 GELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQI 150
Query: 273 KNSLVEL 279
L +L
Sbjct: 151 YQELTDL 157
Score = 55.5 bits (135), Expect = 7e-09
Identities = 17/143 (11%), Positives = 34/143 (23%), Gaps = 30/143 (20%)
Query: 65 KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
+ + +L+ +L L L +L +L + ++
Sbjct: 44 AAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEI-YQ-------ELTRLKAAVGE 94
Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSGE 183
L E L + + V L L + + +G
Sbjct: 95 LPEKSKLQEIYQELTELKAAV-GELPEKSKLQEIYQELTQLKAAVG-------------- 139
Query: 184 KIECSGGMDLRILDLSHNKLRTL 206
E D + +L L
Sbjct: 140 --ELP---DQSKQQQIYQELTDL 157
Score = 55.5 bits (135), Expect = 8e-09
Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 8/129 (6%)
Query: 762 DCSEQQISTVPPRIPM--DATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILN 818
Q+++ + + + + + + +G L ++ L
Sbjct: 33 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELTR-LK 89
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
L L +T L + S+L + + L
Sbjct: 90 AAVGELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQ 147
Query: 879 QLDGNRLKS 887
Q L
Sbjct: 148 QQIYQELTD 156
Score = 54.4 bits (132), Expect = 2e-08
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 8/129 (6%)
Query: 762 DCSEQQISTVPPRIPM--DATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILN 818
Q+++ + + + + + + +G L ++ L
Sbjct: 10 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELT-RLK 66
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
L L +T L + S+L + + L L
Sbjct: 67 AAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELKAAVGE-LPEKSKL 124
Query: 879 QLDGNRLKS 887
Q L
Sbjct: 125 QEIYQELTQ 133
Score = 42.8 bits (102), Expect = 2e-04
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 13/105 (12%)
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
L L +T L + S+L + + L LQ
Sbjct: 3 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 884 RLKSFRA--FDLNTNSMLRKVYLGNNPFS------CSCATLQELQ 920
L +A +L K+ + +LQ
Sbjct: 61 ELTRLKAAVGEL---PEKSKLQEIYQELTRLKAAVGELPEKSKLQ 102
Score = 42.4 bits (101), Expect = 2e-04
Identities = 9/106 (8%), Positives = 25/106 (23%), Gaps = 7/106 (6%)
Query: 762 DCSEQQISTVPPRIP--MDATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILN 818
Q+++ + + + + + + +G L ++ L
Sbjct: 56 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA--AVGELPEKSKLQEIYQELTE-LK 112
Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
L L +T L S+ + +
Sbjct: 113 AAVGELPEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDL 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 95.0 bits (237), Expect = 1e-22
Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 58/202 (28%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP CSC + +V+C ++++VP IP D ++L+ N + V
Sbjct: 6 CPSQCSC------DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGV------- 52
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
FD+L L +LY N++
Sbjct: 53 -----------------------------------------FDHLVNLQQLYFNSNKLTA 71
Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
I G F+ L L L L+ N LKS AFD N S L +YL NNP+ C C + L+
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD-NLKS-LTHIYLYNNPWDCECRDIMYLRN 129
Query: 922 WIIDNSNKVKDGLDISCVIDES 943
W+ D+++ V + +S
Sbjct: 130 WVADHTSIVMRWDGKAVNDPDS 151
Score = 56.5 bits (137), Expect = 3e-09
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
C ++ + + +P+ + + L L NQI+K+E G F +L L L N
Sbjct: 12 CDQ-TLVNCQNIRLASVPAGIPTD--KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
+ + +G+ +L L L+L+ N + I G F+ K L I L +N
Sbjct: 69 LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 53.4 bits (129), Expect = 5e-08
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
L L++N ++ ++ F L+ L L ++N+LT I F L L +LDL +N +
Sbjct: 37 RLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 352 YIEDNAFLSLYNLHTIYLSEN 372
I AF +L +L IYL N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 50.7 bits (122), Expect = 3e-07
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
Q L L NN+I+++ P F L +L+ L +SN L ++P G+F ++++ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 279 LSRGLFHKLEQLLVLDLSSN 298
+ RG F L+ L + L +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 49.2 bits (118), Expect = 1e-06
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 29/128 (22%)
Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKL---------DLTALR-- 642
IP + L++NNN I + FD NL ++ +N +T + LT L
Sbjct: 31 IPTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 643 ---LKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKI 689
LK +P+ K+L YL NP+DC+C +W + ++TS M +
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW---VADHTSIVMRWDGKAV 146
Query: 690 MDLDNVVC 697
D D+ C
Sbjct: 147 NDPDSAKC 154
Score = 49.2 bits (118), Expect = 1e-06
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
+ + L +++N + L G+F ++ ++Y N L + G+F KL QL LDL+ NH
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 300 LSSNHIDETTFIGLIRLIILNLSNN 324
L S I F L L + L NN
Sbjct: 93 LKS--IPRGAFDNLKSLTHIYLYNN 115
Score = 48.4 bits (116), Expect = 2e-06
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
QRL L NN I +E F L NL +Y + N++ I +F+ L L++L L++N L +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 401 IDSKAFKNCSALKELDLSSN 420
I AF N +L + L +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 47.2 bits (113), Expect = 6e-06
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
+ L ++N ++ +L VF L NL++L N+ L + G D L +L L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-------AIPTGVFDKLTQLTQL 86
Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL--------GFAVRRASAES 179
+++ +++KSI F +L ++ + L N RDI L +R
Sbjct: 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAV 146
Query: 180 NSGEKIECSGG 190
N + +C+G
Sbjct: 147 NDPDSAKCAGT 157
Score = 46.9 bits (112), Expect = 7e-06
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
D + L L++N++ L G + + LQ L+ +N+++ I F L+ L L+++
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVN---LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKN 274
NHL S+P G F + + ++ IY N
Sbjct: 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 44.9 bits (107), Expect = 3e-05
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
+ L L+ N+I ++E G F+ L + +SN LT I GVF L QL L+L++NHL
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 38.8 bits (91), Expect = 0.004
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 98 KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
RL + + L + ++ L PG D L LQ L +S+ + +I VF L
Sbjct: 22 IRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 151 NIQTLNLSRNSIRDI 165
+ L+L+ N ++ I
Sbjct: 82 QLTQLDLNDNHLKSI 96
Score = 38.4 bits (90), Expect = 0.006
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 23/105 (21%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
+ ++L+ N+I + +F+ L L +L ++N L I + F
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK-------------- 79
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L L LDL +N + I G+F NL+ LT + L +N
Sbjct: 80 ---------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 95.7 bits (239), Expect = 2e-21
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 36/277 (12%)
Query: 210 SGITKFRRLQNLHLENNEIS--QIAPNAFVALSSLRILNISS-NHLV-SLPEGLFSSCRD 265
T+ R+ NL L + P++ L L L I N+LV +P + +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQ 102
Query: 266 ISEIYAQKNSLV-----ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIIL 319
+ +Y ++ LS +++ L+ LD S N LS + I L L+ +
Sbjct: 103 LHYLYITHTNVSGAIPDFLS-----QIKTLVTLDFSYNALSGT-L--PPSISSLPNLVGI 154
Query: 320 NLSNNELT-RIDAKTFKDLVFLQR-LDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH- 375
N ++ I ++ L + + N + G I + NL + LS N +
Sbjct: 155 TFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLNLAFVDLSRNMLEG 211
Query: 376 HITAHLFNGLYVLSKLTLSNNLLV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELP 433
+ + K+ L+ N L ++ L LDL +N I +P L++L
Sbjct: 212 DASVLFGS-DKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 434 FLKTLDLGENQIS-KI-ENGSFKNLQQLTDLRLVDNN 468
FL +L++ N + +I + G+ + +N
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQR---FDVSAYANNK 302
Score = 85.3 bits (212), Expect = 7e-18
Identities = 62/312 (19%), Positives = 106/312 (33%), Gaps = 56/312 (17%)
Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHL---VSLPEGLFSSCRDISEIYAQKNSL 276
N + + + L++S +L +P L
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA---------------- 73
Query: 277 VELSRGLFHKLEQLLVLDLSS-NHLSSNHIDETTFIG-LIRLIILNLSNNELT-RIDAKT 333
L L L + N+L I I L +L L +++ ++ I
Sbjct: 74 ---------NLPYLNFLYIGGINNLVG-PIPPA--IAKLTQLHYLYITHTNVSGAIPD-F 120
Query: 334 FKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKL 391
+ L LD N++ G + + SL NL I NRI I + + + +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS-KIE 449
T+S N L F N + L +DLS N + + + + L +N ++ +
Sbjct: 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL- 237
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSG----MLYELPSLEVLNLSKNKIH-QI-EIGTFEK 503
G + L L L +N I G L +L L LN+S N + +I + G
Sbjct: 238 -GKVGLSKNLNGLDLRNNRI----YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-- 290
Query: 504 NKRLAAIRLDSN 515
+R +N
Sbjct: 291 -QRFDVSAYANN 301
Score = 82.2 bits (204), Expect = 6e-17
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 38/234 (16%)
Query: 340 LQRLDLRNNSI-GYIEDNAFLS-LYNLHTIYLS-ENRIH-HITAHLFNGLYVLSKLTLSN 395
+ LDL ++ + L+ L L+ +Y+ N + I + L L L +++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITH 110
Query: 396 NLLV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS-KI--EN 450
+ I L LD S NA+ +P ++S LP L + N+IS I
Sbjct: 111 TNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 451 GSFKNLQQLTDLRLVDNN--------IGNLS-----------SGM----LYELPSLEVLN 487
GSF L T + + N NL+ G + + ++
Sbjct: 170 GSFSKL--FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 488 LSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHL 540
L+KN + ++G +K L + L +N + + T L L LN+S N+L
Sbjct: 228 LAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 76.0 bits (188), Expect = 7e-15
Identities = 51/295 (17%), Positives = 99/295 (33%), Gaps = 75/295 (25%)
Query: 408 NCSALKELDLSSNAI---VEIPSALSELPFLKTLDL-GENQISKIENG----SFKNLQQL 459
+ LDLS + IPS+L+ LP+L L + G N + G + L QL
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQL 103
Query: 460 TDLRLVDNN--------IGNLSSGMLYELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLA 508
L + N + + + L L+ S N + + I + L
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKT--------LVTLDFSYNALSGTLPPSISSL---PNLV 152
Query: 509 AIRLDSNFLT-DINGVFTYLAQLL-WLNLSENHLVWFDYAMVPG---------NLKWLDI 557
I D N ++ I + ++L + +S N L G NL ++D+
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------GKIPPTFANLNLAFVDL 204
Query: 558 HGNYISSLNNYYEIKDGL----SIKNLDASHNRIL-EISELSIPNSVEVLFINNNLIKSV 612
N + + + + + + N + ++ ++ + ++ L + NN I
Sbjct: 205 SRNMLEG-----DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 613 KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN---KTLPEFYLGGNPFDC 664
P L +++ N++ +PQ + N C
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLC---------GEIPQGGNLQRFDVSAYANNKCLC 305
Score = 74.1 bits (183), Expect = 4e-14
Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 55/298 (18%)
Query: 92 SGLRNLKRLT-INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDV---FC 147
R+ ++ L K + P SL L L L I N ++ +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGIN--NLVGPIPPAIA 98
Query: 148 SLANIQTLNLSRNSIR-DI-DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
L + L ++ ++ I D L + L LD S+N L
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLS----------------QIK---TLVTLDFSYNAL-- 137
Query: 206 LGDYSG-----ITKFRRLQNLHLENNEIS-QIAPNAFVALSSL-RILNISSNHLV-SLPE 257
SG I+ L + + N IS I P+++ + S L + IS N L +P
Sbjct: 138 ----SGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 258 GLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRL 316
+ +++ + +N L + S + + L+ N L+ + + + L
Sbjct: 193 TFANL--NLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFD-LGK--VGLSKNL 246
Query: 317 IILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENR 373
L+L NN + + L FL L++ N++ G I L + N+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ--RFDVSAYANNK 302
Score = 60.6 bits (148), Expect = 8e-10
Identities = 48/273 (17%), Positives = 85/273 (31%), Gaps = 73/273 (26%)
Query: 66 SFQNIYSLEELKISNCKLV--ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
S N+ L L I + +P + L L L I N+ +P L
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVS-------GAIPDFLS 122
Query: 124 GLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
++ L L+ S + + ++ SL N+ + N I SG
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI------------------SG 163
Query: 183 EKIECSGGMD--LRILDLSHNKL-----RTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
+ G + +S N+L T + + L + L N + A
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-------LAFVDLSRNMLEGDASVL 216
Query: 236 FVALSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLD 294
F + + + ++++ N L L + + L LD
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK--------------------------VGLSKNLNGLD 250
Query: 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
L +N + + + L L LN+S N L
Sbjct: 251 LRNNRIYG-TLPQ-GLTQLKFLHSLNVSFNNLC 281
Score = 40.6 bits (96), Expect = 0.003
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 824 LSSLQVLHLENNLITHFYGY---EFDNLEKLSELYLQENRIE-----YIANGTFNALISL 875
L+ L L++ + ++ G ++ L L N + I++ L +L
Sbjct: 100 LTQLHYLYITHTNVS---GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-----LPNL 151
Query: 876 QVLQLDGNRL-----KSFRAFDLNTNSMLRKVYLGNNPFS 910
+ DGNR+ S+ + + + + + N +
Sbjct: 152 VGITFDGNRISGAIPDSY----GSFSKLFTSMTISRNRLT 187
Score = 34.0 bits (79), Expect = 0.27
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 780 THVYLDGNTFK-TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
+ DGN IP+ K S+ ++ +++ + TF L+ L + L N++
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 839 HFYGY---EFDNLEKLSELYLQENRIEYIANGT---FNALISLQVLQLDGNRL 885
G F + + +++L +N + +L L L NR+
Sbjct: 211 ---GDASVLFGSDKNTQKIHLAKNSL----AFDLGKVGLSKNLNGLDLRNNRI 256
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 98.3 bits (244), Expect = 4e-21
Identities = 51/265 (19%), Positives = 93/265 (35%), Gaps = 12/265 (4%)
Query: 234 NAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVL 293
+ V L L +++ +++ E K+ R EQL
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLFRC 354
Query: 294 DLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI 353
+LS + + + L L N LT I + L L ++ Y
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCL-LTII-----LLMRALDPLLYEKETLQYF 408
Query: 354 EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
+ + ++ + L + L L++ L + + +
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVT 466
Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
LDLS N + +P AL+ L L+ L +N + ++ NL +L +L L +N + +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSA 524
Query: 474 S-GMLYELPSLEVLNLSKNKIHQIE 497
+ L P L +LNL N + Q E
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEE 549
Score = 89.4 bits (221), Expect = 3e-18
Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 13/230 (5%)
Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
L +S L SC+++ E+ + + L L+ LL +
Sbjct: 348 DEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358
+ S + +R L+ ++ ++ + ++ L L + + +
Sbjct: 407 YFS-----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461
Query: 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
L + + LS NR+ + L L L L S+N L N+D N L+EL L
Sbjct: 462 LL--LVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG--VANLPRLQELLLC 516
Query: 419 SNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
+N + + + L P L L+L N + + E + + L + +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
Score = 72.1 bits (176), Expect = 7e-13
Identities = 36/296 (12%), Positives = 97/296 (32%), Gaps = 6/296 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
+ L + + + + L L +L++ L +
Sbjct: 259 VCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTF 318
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL 462
+ + KE L + + L +L + + +++ ++ ++L +L
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSE-LESCKELQEL 377
Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING 522
+ ++ L L + ++ + L +R S FL + +
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR--SKFLLENSV 435
Query: 523 VFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDA 582
+ A + L+L+ L + + LD+ N + +L + ++ L A
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQA 493
Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSVK-PHTFFDKSNLARVDIYANDITKLD 637
S N + + ++ ++ L + NN ++ L +++ N + + +
Sbjct: 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
Score = 71.7 bits (175), Expect = 9e-13
Identities = 37/267 (13%), Positives = 75/267 (28%), Gaps = 24/267 (8%)
Query: 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK 407
+ + + L +L L++ H ++ G + L + +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSA 346
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
L +LS + S L L+ L+ + L L +
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 468 NIGNL---------------------SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
L +S + E + VL+L+ + + E+
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLL 464
Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
+ + L N L + L L L S+N L D L+ L + N +
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524
Query: 567 NYYEIKDGLSIKNLDASHNRILEISEL 593
+ + L+ N + + +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGI 551
Score = 64.8 bits (157), Expect = 1e-10
Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 39/250 (15%)
Query: 1 MFEVPENCSWKMENESMNRISVTC-NLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLD 59
+ S K +R C + + LS + ++ C L+
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE 378
Query: 60 SSITTKSFQNIYSLEELKISNC------------KLVELPVDVFSGLRNLKRLTINTRNL 107
I + L + + LR+ L + +
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438
Query: 108 QWDKSKKLDL------VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS 161
++ + L L V L+ L + L++S + ++++ +L ++ L S N+
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA 497
Query: 162 IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNL 221
+ ++D + R L+ L L +N+L+ + RL L
Sbjct: 498 LENVDGVANLPR-------------------LQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
Query: 222 HLENNEISQI 231
+L+ N + Q
Sbjct: 539 NLQGNSLCQE 548
Score = 62.1 bits (150), Expect = 7e-10
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
++ L++ + + V+ + L + L L +N + L L L +N
Sbjct: 441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 497
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFSC 911
+E + L LQ L L NRL+ A L + L + L N
Sbjct: 498 LENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
Score = 55.5 bits (133), Expect = 9e-08
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 776 PMDATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLEN 834
D ++L + + + + + L ++++++ + L L+VL +
Sbjct: 440 YADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASD 495
Query: 835 NLITHFYGYEFDNLEKLSELYLQENRIEYIAN-GTFNALISLQVLQLDGNRL 885
N + + G NL +L EL L NR++ A + L +L L GN L
Sbjct: 496 NALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 33.6 bits (76), Expect = 0.47
Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 705 STHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCS 764
+ S++L + ++T + +D S
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL----LVTHLDLS 471
Query: 765 EQQISTVPPRIPM--DATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILN-QT 820
++ +PP + + N + + + + L + N++++ Q
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRLQQSAAIQP 528
Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL 854
L +L+L+ N + G + E L +
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 87.5 bits (217), Expect = 2e-18
Identities = 60/354 (16%), Positives = 111/354 (31%), Gaps = 73/354 (20%)
Query: 218 LQNLHLENNEIS-----QIAPNAFVALSSLRILNISSNHL-----VSLPEGLFSSCRDIS 267
+ +L L N + ++ +S+ LN+S N L L + L + +++
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 268 EIYAQKNSL-----VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLS 322
+ N L EL + L + VLDL N SS S
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS---------SEFKQAFS 134
Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF---LSLYN--LHTIYLSENRIH-- 375
N + + L+LR N +G + L+ ++++ L N +
Sbjct: 135 NLPAS------------ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182
Query: 376 ---HITAHLFNGLYVLSKLTLSNNLLVNIDSKAF-----KNCSALKELDLSSNAI----- 422
+ L + ++ L LS NLL + + L+L N +
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENG-------SFKNLQQLTDLRLVDNNIGNLSSG 475
+ L L+T+ L + + + +F N+Q++ + I S
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302
Query: 476 MLYEL-----PSLEVLNLSKNKI-----HQIEIGTFEKNKRLAAIRLDSNFLTD 519
+ L +V +L + HQ I L L +
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356
Score = 84.0 bits (208), Expect = 3e-17
Identities = 52/336 (15%), Positives = 104/336 (30%), Gaps = 62/336 (18%)
Query: 193 LRILDLSHNKLRTLGDYSGITKF--------RRLQNLHLENNEISQIAPNAFVAL----- 239
+ LDLS N L + + +L+L N + + V +
Sbjct: 24 VTSLDLSLNNL---YS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 240 SSLRILNISSNHL-----VSLPEGLFSSCRDISEIYAQKNSL-----VELSRGLFHKLEQ 289
+++ LN+S N L L + L + I+ + N E + +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 290 LLVLDLSSNHLSS---NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV-----FLQ 341
+ L+L N L + + + + LNL N L + + +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 342 RLDLRNNSIGYIEDNAFLSL-----YNLHTIYLSENRIHHITAH----LFNGLYVLSKLT 392
LDL N +G + ++ ++ L N +H + L + L L +
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259
Query: 393 LSNNLLVNID-------SKAFKNCSALKELDLSSNAI-----VEIPSALSELPF-LKTLD 439
L +++ N+ AF N + +D + I + I + + EL
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319
Query: 440 LGENQISKIENGSF-----KNLQQLTDLRLVDNNIG 470
L + + +L + +
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
Score = 72.4 bits (178), Expect = 2e-13
Identities = 59/317 (18%), Positives = 103/317 (32%), Gaps = 66/317 (20%)
Query: 393 LSNNLLVNID----SKAFKNCSALKELDLSSNAI-----VEIPSALSELP-FLKTLDLGE 442
++ L ++ + + LDLS N + VE+ A + P + +L+L
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 443 NQISK-----IENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNK 492
N + + +T L L N + L + ++ VL+L N
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 493 IHQIEIGTF-----EKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAM 547
F + ++ L N L L Q+L A
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-KSS-DELIQIL--------------AA 164
Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGL-----SIKNLDASHNRI-----LEISEL--SI 595
+P N+ L++ GN ++S N E+ L S+ +LD S N + E++ + SI
Sbjct: 165 IPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223
Query: 596 PNSVEVLFINNN---------LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646
PN V L + N L L + +++K AL
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--KNMSKEQCKAL-GAAF 280
Query: 647 PQNKTLPEFYLGGNPFD 663
P + + G
Sbjct: 281 PNIQKIILVDKNGKEIH 297
Score = 68.2 bits (167), Expect = 4e-12
Identities = 49/376 (13%), Positives = 99/376 (26%), Gaps = 92/376 (24%)
Query: 69 NIYSLEELKISNCKLVELPVDVFSGLRNL-KRLTINTRNLQWDKSKKLDLVPGSLDGLRE 127
S+ L +S L L + L N+ L+
Sbjct: 49 TPASVTSLNLSGNSLGF------KNSDELVQILAAIPANV-----TSLN----------- 86
Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIEC 187
L +S + + + I L+L N + F +A + +
Sbjct: 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK--QAFSNLPAS----- 139
Query: 188 SGGMDLRILDLSHNKLRTLGDY---SGITKF-RRLQNLHLENNEISQIAPNAFVAL---- 239
+ L+L N L + + +L+L N ++
Sbjct: 140 -----ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194
Query: 240 -SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
+S+ L++S+N L S EL+ ++ L+L N
Sbjct: 195 PASVTSLDLSANLL-------------------GLKSYAELAYIFSSIPNHVVSLNLCLN 235
Query: 299 HLSSNHIDE--TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
L ++ L L + L + + + + K L N
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA----FPNIQ------- 284
Query: 357 AFLSLYNLHTIYLSENRIHHITA-HLFNGL----YVLSKLTLSNNLL-----VNIDSKAF 406
+ + + IH + + N + +L N L + +
Sbjct: 285 ------KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDL 338
Query: 407 KNCSALKELDLSSNAI 422
L+E + +
Sbjct: 339 NIPDELRESIQTCKPL 354
Score = 33.9 bits (78), Expect = 0.36
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 15/105 (14%)
Query: 825 SSLQVLHLENNLITHFYGYEF-----DNLEKLSELYLQENRI-----EYIANGTFNALIS 874
+++ L+L N +++ E ++ L L N N S
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 875 LQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYLGNNPFSCSCA 914
+ L L GN L + +L + + + L N +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184
Score = 32.0 bits (73), Expect = 1.3
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 825 SSLQVLHLENNLITHFYGYEF-----DNLEKLSELYLQENRI-----EYIANGTFNALIS 874
+S+ L+L N + E ++ L L N + + + +
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 875 LQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYLGNNPFSCSCAT 915
+ VL L N S + + N + + + L N +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156
Score = 30.4 bits (69), Expect = 4.4
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 20/108 (18%)
Query: 825 SSLQVLHLENNLITHFYGYEF------DNLEKLSELYLQENRI-----EYIANGTFNALI 873
+S+ L L NL+ Y + L L N + E + ++L
Sbjct: 196 ASVTSLDLSANLLGL-KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL-KDSLK 253
Query: 874 SLQVLQLDGNRLKSFRAFD-------LNTNSMLRKVYLGNNPFSCSCA 914
LQ + LD + +K+ + V S +
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 83.6 bits (207), Expect = 3e-18
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDL--SSNAIVEIPSALSELPFLKTLDLGENQI 445
++K T + + + + + ++++L I ++ + LS L K L L N I
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60
Query: 446 SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNK 505
KI + ++ L L L N I + + +LE L +S N+I + EK
Sbjct: 61 EKISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLV 115
Query: 506 RLAAIRLDSNFLTDINGV--FTYLAQLLWLNLSEN 538
L + + +N +T+ + L +L L L+ N
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 82.8 bits (205), Expect = 5e-18
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR 373
+ L+ + ++D T L + L L N+I I + NL + L N
Sbjct: 25 AEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNL 81
Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS--ALSE 431
I I +L L +L +S N + ++ + L+ L +S+N I L+
Sbjct: 82 IKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138
Query: 432 LPFLKTLDLGENQISKIEN 450
L L+ L L N +
Sbjct: 139 LDKLEDLLLAGNPLYNDYK 157
Score = 65.1 bits (159), Expect = 6e-12
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
L ++ + IE I + +G+ +L++L L NLI + + L EL++ N+I ++
Sbjct: 53 LALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS 109
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
L++L+VL + N++ ++ D L L + L NP +
Sbjct: 110 G--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
Score = 62.4 bits (152), Expect = 5e-11
Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 52/174 (29%)
Query: 442 ENQISKIENGSFKNLQQLTDLRL--VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIG 499
++ I E + + L + I + + L L + + L LS N I +I
Sbjct: 8 KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-- 64
Query: 500 TFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHG 559
+LS + NL+ L +
Sbjct: 65 ----------------------------------SLS--GME---------NLRILSLGR 79
Query: 560 NYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVK 613
N I + N + D L + L S+N+I +S + ++ VL+++NN I +
Sbjct: 80 NLIKKIENLDAVADTL--EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131
Score = 61.6 bits (150), Expect = 9e-11
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
L + + + ++ + ++L L N I +I+ + +LRIL++ N + +
Sbjct: 30 LHGMIPPIEKMD--ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKI 85
Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI-GLI 314
E L + + E++ N + LS G+ KL L VL +S+N +++ E + L
Sbjct: 86 -ENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITN--WGEIDKLAALD 140
Query: 315 RLIILNLSNNELTRI 329
+L L L+ N L
Sbjct: 141 KLEDLLLAGNPLYND 155
Score = 60.9 bits (148), Expect = 2e-10
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 113 KKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI---DTLG 169
++ + +L L+ + L +S++NI+ IS + N++ L+L RN I+ I D +
Sbjct: 35 PPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVA 92
Query: 170 FAVRRASAESNSGEKIE-CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228
+ N + ++LR+L +S+NK+ G+ + +L++L L N +
Sbjct: 93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
Query: 229 SQIAP 233
Sbjct: 153 YNDYK 157
Score = 56.6 bits (137), Expect = 5e-09
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNEL 326
E++ + ++ L L+ L LS+N++ + + G+ L IL+L N +
Sbjct: 29 ELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISSLS-----GMENLRILSLGRNLI 82
Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--AHLFNG 384
+I+ L+ L + N I + L NL +Y+S N+I + L
Sbjct: 83 KKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKL-AA 138
Query: 385 LYVLSKLTLSNNLLVNIDS----------KAFKNCSALKELD 416
L L L L+ N L N + K LK+LD
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 47.4 bits (113), Expect = 7e-06
Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 812 QIEVILNQTFNGLSSLQV--LHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF 869
I + + + + LH I L+ L L N IE I++
Sbjct: 10 AIRIFEERKSVVATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--L 66
Query: 870 NALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC-----SCATLQELQTWII 924
+ + +L++L L N +K D ++ L ++++ N + L+ L ++
Sbjct: 67 SGMENLRILSLGRNLIKKIENLDAVADT-LEELWISYNQIASLSGIEKLVNLRVL--YM- 122
Query: 925 DNSNKVKDGLDISC 938
++NK+ + +I
Sbjct: 123 -SNNKITNWGEIDK 135
Score = 41.6 bits (98), Expect = 6e-04
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 783 YLDGNTFKTIPNHVFIGRKNML-SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFY 841
L N K I N + L L+++ +QI + L +L+VL++ NN IT++
Sbjct: 76 SLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWG 131
Query: 842 GYEF-DNLEKLSELYLQENRI 861
+ L+KL +L L N +
Sbjct: 132 EIDKLAALDKLEDLLLAGNPL 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 86.7 bits (214), Expect = 4e-18
Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 54/188 (28%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
CP C ++ + C+ +P
Sbjct: 1 CPDACCPH-----GSSGLRCTRDGALDSLHHLP--------------------------- 28
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSELYLQENRIE 862
G +L L++E + H + L +L L + ++ +
Sbjct: 29 -------------------GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
++A F+ L L L N L+S + S L+++ L NP CSCA L+ LQ W
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA-LRWLQRW 127
Query: 923 IIDNSNKV 930
+ V
Sbjct: 128 EEEGLGGV 135
Score = 81.3 bits (200), Expect = 2e-16
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDL-GENQISKIENGSFKNLQQLTDLRLVDN 467
L + + ++ L L L + + + +E + L +L +L +V +
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
+ ++ + P L LNLS N + + T + L + L N L
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH 116
Score = 79.8 bits (196), Expect = 8e-16
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 308 TTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
G L L + L ++ + + L L+ L + + + ++ +AF L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
+ LS N + ++ GL L +L LS N
Sbjct: 85 LNLSFNALESLSWKTVQGLS-LQELVLSGN 113
Score = 77.1 bits (189), Expect = 5e-15
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 262 SCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNL 321
S + ++ ++ E L L + + H++ GL L L +
Sbjct: 6 CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTI 63
Query: 322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
+ L + F L RL+L N++ + L +L + LS N +H
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
Score = 75.9 bits (186), Expect = 1e-14
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 332 KTFKDLVFLQRLDLR-NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390
L L + + ++E L L + + ++ + + F+ LS+
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
L LS N L ++ K + S L+EL LS N +
Sbjct: 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 72.1 bits (176), Expect = 3e-13
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 357 AFLSLYNLHTIYLSENR-IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415
NL +Y+ + + H+ GL L LT+ + L + AF L L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 416 DLSSNAIVEIPSALSELPFLKTLDLGEN 443
+LS NA+ + + L+ L L N
Sbjct: 86 NLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 69.4 bits (169), Expect = 2e-12
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 192 DLRILDLSHNK-LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
+L L + + + L+ L + L+NL + + + +AP+AF L LN+S N
Sbjct: 32 NLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90
Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLV 277
L SL + E+ N L
Sbjct: 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 65.5 bits (159), Expect = 3e-11
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 576 SIKNLDASHNRILEISELSIPNSV-------EVLFINNNLIKSVKPHTFFDKSNLARVDI 628
++ L + + L+ + L I + ++ V P F L+R+++
Sbjct: 32 NLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87
Query: 629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPK 688
N + L + Q +L E L GNP C C++ WL + Q +
Sbjct: 88 SFNALESLSWKTV------QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141
Query: 689 IMDLDNVVCKM 699
+
Sbjct: 142 CHGQGPLAHMP 152
Score = 62.8 bits (152), Expect = 2e-10
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 187 CSGGMDLRILDLSH-NKLRTLGDYSGITKFRRLQNLHLE-NNEISQIAPNAFVALSSLRI 244
G LR + L + L L++E + + L LR
Sbjct: 7 PHGSSGLRCTRDGALDSLH------HLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
L I + L + F +S + N+L LS L L L LS N L
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 61.7 bits (149), Expect = 6e-10
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 233 PNAFVALSSLRILNISSN-HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL 291
+ +L L I + HL L ++ + K+ L ++ FH +L
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
L+LS N L S + T GL L L LS N L
Sbjct: 84 RLNLSFNALES--LSWKTVQGL-SLQELVLSGNPLH 116
Score = 54.0 bits (129), Expect = 2e-07
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 71 YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
+ L+ + ++ G NL L I + L L GL EL+
Sbjct: 8 HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH------LELRDLRGLGELRN 60
Query: 131 LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
L I S ++ ++ D F + LNLS N++ +
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95
Score = 53.2 bits (127), Expect = 3e-07
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 477 LYELPSLEVLNLSKNK-IHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLN 534
L +L L + + + +E+ L + + + L + F + +L LN
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 535 LSENHLVWF-DYAMVPGNLKWLDIHGN 560
LS N L + +L+ L + GN
Sbjct: 87 LSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 46.7 bits (110), Expect = 3e-05
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
+ + + + L L I L + D F L RL ++ L+ L
Sbjct: 45 QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-------LSW 97
Query: 120 GSLDGLRELQVLNISS 135
++ GL LQ L +S
Sbjct: 98 KTVQGLS-LQELVLSG 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 79.7 bits (197), Expect = 4e-17
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
L+ I + +L L + I++ +D S N I ++
Sbjct: 4 LTAELIEQAAQY--TNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL-DG 59
Query: 429 LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLN 487
L LKTL + N+I +I G + L LT+L L +N++ L L L SL L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 488 LSKNKIHQIE 497
+ +N + +
Sbjct: 120 ILRNPVTNKK 129
Score = 72.4 bits (178), Expect = 1e-14
Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 48/178 (26%)
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
+ L+ L+ + N +ELDL I I + + L +D +N+I K++
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59
Query: 451 GSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAI 510
L L+ L ++ N+I +I G + L +
Sbjct: 60 --------------------------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93
Query: 511 RLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
L +N L ++ + LA L +L +L I N +++ +Y
Sbjct: 94 ILTNNSLVELGDL-DPLASLK-------------------SLTYLCILRNPVTNKKHY 131
Score = 67.4 bits (165), Expect = 7e-13
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 130 VLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
++ +++ I+ + + + + L+L I I+ LG + +
Sbjct: 1 MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQ--------------- 43
Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
+D S N++R L G RRL+ L + NN I +I AL L L +++
Sbjct: 44 ---FDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97
Query: 250 NHLVSLPE-GLFSSCRDISEIYAQKNSLVELS---RGLFHKLEQLLVLD 294
N LV L + +S + ++ + +N + + +K+ Q+ VLD
Sbjct: 98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 67.0 bits (164), Expect = 1e-12
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 284 FHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQR 342
+ + LDL + ++ T L + ++ S+NE+ ++D F L L+
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGAT----LDQFDAIDFSDNEIRKLD--GFPLLRRLKT 68
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--AHLFNGLYVLSKLTLSNNLLVN 400
L + NN I I + +L +L + L+ N + + L + L L+ L + N + N
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS-LKSLTYLCILRNPVTN 127
Query: 401 ID---SKAFKNCSALKELDLSSNAIVEIPSA 428
++ LD + E A
Sbjct: 128 KKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
Score = 66.2 bits (162), Expect = 2e-12
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 244 ILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSN 303
++ +++ + + +++ E+ + + + L L+Q +D S N +
Sbjct: 1 MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK- 56
Query: 304 HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LY 362
+D F L RL L ++NN + RI + L L L L NNS+ + D L+ L
Sbjct: 57 -LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 363 NLHTIYLSENRI 374
+L + + N +
Sbjct: 114 SLTYLCILRNPV 125
Score = 63.9 bits (156), Expect = 1e-11
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
L + +I VI N L + +N I G F L +L L + NRI I
Sbjct: 24 LDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIG 80
Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFS 910
G AL L L L N L D L + L + + NP +
Sbjct: 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Score = 55.0 bits (133), Expect = 1e-08
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 8/131 (6%)
Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
+ L+ + + LD+ G I + N D +D S N I ++
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQF--DAIDFSDNEIRKLDG 59
Query: 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL-DLTALRLKPVPQNKT 651
+ ++ L +NNN I + +L + + N + +L DL L K+
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA-----SLKS 114
Query: 652 LPEFYLGGNPF 662
L + NP
Sbjct: 115 LTYLCILRNPV 125
Score = 51.2 bits (123), Expect = 3e-07
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
+ N EL + K+ + ++ + L + + ++ +KLD L
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAI-----DFSDNEIRKLD----GFPLL 63
Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
R L+ L ++++ I I + + +L ++ L L+ NS+ ++ L
Sbjct: 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 80.4 bits (198), Expect = 2e-15
Identities = 57/463 (12%), Positives = 137/463 (29%), Gaps = 67/463 (14%)
Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFA----- 171
L G + N+ N ++ +++++ R + D+D A
Sbjct: 79 KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD 138
Query: 172 ------VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF----RRLQNL 221
+ + S + G + ++ L + + + + L+ L
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG-KWLHELAQHNTSLEVL 197
Query: 222 HLENNEISQIAPNAFVAL----SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
+ E ++I+P + SL + + ++ L G F + ++ E +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNED 256
Query: 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL-TRIDAKTFKD 336
+ L L + F ++ L+L L T +
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316
Query: 337 LVFLQRLDLRNNSIGYIEDNAFLSL----YNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
L+ L+ RN I D L L + + +
Sbjct: 317 CPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQ--------GMEDEEGL 364
Query: 393 LSNNLLVNIDSKAFKNCSALKELDLS-----SNAIVEIPSALSELPFLKTLDLGENQISK 447
+S L+ + + C L+ + + + ++ I + L L + + L ++ +
Sbjct: 365 VSQRGLIAL----AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL--DREER 418
Query: 448 IENGSF--------KNLQQLTDLRLVDN--NIGNLSSGMLYEL-PSLEVLNLSKNKIHQI 496
I + ++L + +L + + P++ + L
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478
Query: 497 EIGTFEKN-KRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLS 536
+ F + L + + ++ I T L L +L +
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521
Score = 71.9 bits (176), Expect = 7e-13
Identities = 55/412 (13%), Positives = 125/412 (30%), Gaps = 48/412 (11%)
Query: 50 IDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV--ELPVDVFSGLRNLKRLTINTRNL 107
+ ++ D + + LE LK+ C + + + + R +K L + +
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176
Query: 108 QWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIR 163
K L + L+VLN + IS ++A ++ ++ + I
Sbjct: 177 SEKDGKWLHELA---QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI- 232
Query: 164 DIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF-------- 215
++ +GF A+ E G + GM + ++L + S +
Sbjct: 233 -LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291
Query: 216 -RRLQNLHLENNE-ISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
+++ L L ++ +L +L + E L C+ + + ++
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351
Query: 274 NSLVELSRGLFHKLEQLLVLDLSSN-------HLSSNHIDETTFIGL---------IRLI 317
+ + + Q ++ L+ + + I + + RL+
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411
Query: 318 ILNLSNNELTRIDAKTFKDLV----FLQRLDLRNNSIGYIEDNAFLSLY----NLHTIYL 369
+L+ + L+ L+R G + D + N+ + L
Sbjct: 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG-LTDLGLSYIGQYSPNVRWMLL 470
Query: 370 SENRIHHIT-AHLFNGLYVLSKLTLSNNLLVNIDSKAF-KNCSALKELDLSS 419
G L KL + A +L+ L +
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522
Score = 57.6 bits (139), Expect = 2e-08
Identities = 37/269 (13%), Positives = 78/269 (28%), Gaps = 33/269 (12%)
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
+ + + L F + R + + ++ L + V ++S+N
Sbjct: 54 HVTMALCYTATPDRLSRR-FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-- 110
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF--LQRLDLRNNSIGYIEDNAF 358
L +L ++ ++ +D L+ L L S +
Sbjct: 111 ------------LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS--GFTTDGL 156
Query: 359 LSL----YNLHTIYLSENRIHHIT----AHLFNGLYVLSKLTLSNNLLVNIDSKA----F 406
LS+ + T+ + E+ L L L I K
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216
Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
+NC +L + + I+E+ L+ G + NL L +
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276
Query: 467 -NNIGNLSSGMLYEL-PSLEVLNLSKNKI 493
+ +G +L+ + L+L +
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALL 305
Score = 40.3 bits (94), Expect = 0.005
Identities = 28/215 (13%), Positives = 72/215 (33%), Gaps = 38/215 (17%)
Query: 72 SLEELKISNCKLVELPV-DVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS------LDG 124
LE + + + + + + L+NL R + D+ +++ +P L G
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDF----RLVLLDREERITDLPLDNGVRSLLIG 434
Query: 125 LRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
++L+ ++D + N++ + L D + F+
Sbjct: 435 CKKLRRFAFYLRQGG-LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS--------- 484
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
G +L+ L++ + +TK L+ L ++ S + + ++
Sbjct: 485 -------RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS-MTGQDLMQMA 536
Query: 241 ----SLRILNISSNHLVSLPEGLFSSCRDISEIYA 271
++ ++ V+ +G + I A
Sbjct: 537 RPYWNIELIPSRRVPEVN-QQGEIREMEHPAHILA 570
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 74.0 bits (182), Expect = 3e-15
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382
+ EL ++LV LD ++ G IE NL + L + ++
Sbjct: 15 HLELRNRTPAAVRELV----LDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISVSN--L 67
Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS--ALSELPFLKTLDL 440
L L KL LS N + + L L+LS N + +I + L +L LK+LDL
Sbjct: 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127
Query: 441 GENQISKIEN---GSFKNLQQLTDL 462
+++ + + FK L QLT L
Sbjct: 128 FNCEVTNLNDYRESVFKLLPQLTYL 152
Score = 70.5 bits (173), Expect = 4e-14
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 388 LSKLTLSNNLLVNID-SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
+ +L L N + L+ L L + ++ + S L +LP LK L+L EN+I
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF 84
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIE 497
+ + L LT L L N + ++S+ L +L L+ L+L ++ +
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 62.1 bits (151), Expect = 4e-11
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 48/164 (29%)
Query: 407 KNCSALKE--LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
+ +A++E LD + +I +E L+ L L + + N
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------- 66
Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
L +LP L+ L LS+N+I EK L + L N L DI+ +
Sbjct: 67 ------------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL- 113
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
L +L LK LD+ +++LN+Y
Sbjct: 114 EPLKKL-------------------ECLKSLDLFNCEVTNLNDY 138
Score = 60.1 bits (146), Expect = 2e-10
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
L L S I T +L+ L L N + L KL +L L ENRI
Sbjct: 27 RELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRI 83
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFS 910
+ L +L L L GN+LK + L L+ + L N +
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Score = 56.7 bits (137), Expect = 3e-09
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 180 NSGEKIECSGGM--DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
++ KIE +L L L + L ++ S + K +L+ L L N I
Sbjct: 36 SNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAE 92
Query: 238 ALSSLRILNISSNHLVSLPE-GLFSSCRDISEIYAQKNSLVELS---RGLFHKLEQLLVL 293
L +L LN+S N L + + + + L+ +F L QL L
Sbjct: 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
Query: 294 D 294
D
Sbjct: 153 D 153
Score = 56.3 bits (136), Expect = 4e-09
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
GL + L L L + L S + L +L L LS N + + L L
Sbjct: 43 GLTAEFVNLEFLSLINVGLIS--VS--NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98
Query: 342 RLDLRNNSIGYIEDNAFLS-LYNLHTIYLSENRI 374
L+L N + I L L L ++ L +
Sbjct: 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
Score = 53.6 bits (129), Expect = 3e-08
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 9/134 (6%)
Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
L + +I +L L++ + L+S+ L + ++ +N +
Sbjct: 30 VLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGG 86
Query: 280 SRGLFHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNELTRID---AKTFK 335
L KL L L+LS N L + ++ L L L+L N E+T ++ FK
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNCEVTNLNDYRESVFK 144
Query: 336 DLVFLQRLDLRNNS 349
L L LD +
Sbjct: 145 LLPQLTYLDGYDRE 158
Score = 49.0 bits (117), Expect = 1e-06
Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
+D+ ++ N + +++L L +N G + G+ E +LE L+L + +
Sbjct: 8 MDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISVS 65
Query: 498 IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
K +L + L N + L+E NL L++
Sbjct: 66 N--LPKLPKLKKLELSENRIFGGLD-----------MLAEKLP----------NLTHLNL 102
Query: 558 HGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
GN + ++ +K +K+LD + + +++
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 47.0 bits (112), Expect = 6e-06
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 68 QNIYSLEELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
+ ++ EL + NCK + ++ + + NL+ L++ L + +L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVS----NLPKLP 71
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
+L+ L +S + I D + L N+ LNLS N ++DI TL
Sbjct: 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113
Score = 44.7 bits (106), Expect = 3e-05
Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 549 PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNL 608
P ++ L + + + ++++ L + ++ +S L ++ L ++ N
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82
Query: 609 IKSVKPHTFFDKSNLARVDIYANDITKL-DLTALRLKPVPQNKTLPEFYLGGNP 661
I NL +++ N + + L L+ + + L L
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK-----KLECLKSLDLFNCE 131
Score = 42.0 bits (99), Expect = 3e-04
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
L ++ N + L ++ ++I L+ L +L L+L N +
Sbjct: 55 SLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112
Query: 843 YE-FDNLEKLSELYLQENRIEYIAN---GTFNALISLQVL 878
E LE L L L + + + F L L L
Sbjct: 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 70.5 bits (173), Expect = 3e-14
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 388 LSKLTLSNNLLVNIDSKA-FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
+ +L L N+ + L+ L + + I + L +L LK L+L +N++S
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVS 77
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIE 497
+ LT L L N I +LS+ L +L +L+ L+L ++ +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 69.7 bits (171), Expect = 6e-14
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR 373
++ ++L+ S + +++ T + L+ L N + I + L L + LS+NR
Sbjct: 19 VKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75
Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVEIP----SA 428
+ L L+ L LS N + ++ + + K LK LDL + + + +
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135
Query: 429 LSELPFLKTLD 439
LP L LD
Sbjct: 136 FKLLPQLTYLD 146
Score = 65.9 bits (161), Expect = 1e-12
Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 48/164 (29%)
Query: 407 KNCSALKE--LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
+ S +KE LD S + ++ E L+ L ++ I N L +L L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLEL 71
Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
DN + + + P+L LNLS NKI +
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST-------------------------I 106
Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
L +L NLK LD+ +++LN+Y
Sbjct: 107 EPLKKL-------------------ENLKSLDLFNCEVTNLNDY 131
Score = 60.8 bits (148), Expect = 7e-11
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
L L + S + T + L+ L N +T L KL +L L +NR+
Sbjct: 22 LVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSG 78
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFS 910
+L L L GN++K + L L+ + L N +
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Score = 57.8 bits (140), Expect = 7e-10
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 8/121 (6%)
Query: 179 SNSGEKIECSGGMD-LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
SN G+ + + L L + L ++ + + K +L+ L L +N +S
Sbjct: 29 SNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAE 85
Query: 238 ALSSLRILNISSNHLVSLPE-GLFSSCRDISEIYAQKNSLVELS---RGLFHKLEQLLVL 293
+L LN+S N + L ++ + + L+ +F L QL L
Sbjct: 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
Query: 294 D 294
D
Sbjct: 146 D 146
Score = 55.8 bits (135), Expect = 4e-09
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 281 RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFL 340
GL + E+L L + L+S I L +L L LS+N ++ + L
Sbjct: 35 EGLTDEFEELEFLSTINVGLTS--IAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90
Query: 341 QRLDLRNNSIGYIEDNAFLS-LYNLHTIYLSEN 372
L+L N I + L L NL ++ L
Sbjct: 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 54.7 bits (132), Expect = 8e-09
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 218 LQNLHLENNEISQIA-PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL 276
++ L L+N+ ++ L L+ + L S+ L + ++ N +
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRV 76
Query: 277 VELSRGLFHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNELTRID---AK 332
L K L L+LS N + + I+ L L L+L N E+T ++
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVTNLNDYREN 134
Query: 333 TFKDLVFLQRLD 344
FK L L LD
Sbjct: 135 VFKLLPQLTYLD 146
Score = 45.8 bits (109), Expect = 9e-06
Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 549 PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNL 608
P ++K L + + + + ++ L + + I+ L N ++ L +++N
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75
Query: 609 IKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
+ NL +++ N I L ++P+ + + L L
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLS----TIEPLKKLENLKSLDLFNCE 124
Score = 44.7 bits (106), Expect = 2e-05
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 68 QNIYSLEELKISNCKLVELPV-DVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
+ ++EL + N + E + + L+ L + + +L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFL-----STINVGLTSIA----NLPKLN 64
Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
+L+ L +S + + + + N+ LNLS N I+D+ T+
Sbjct: 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106
Score = 40.4 bits (95), Expect = 9e-04
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
+I N + L ++++++ L +L L+L N I
Sbjct: 48 STINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
Query: 843 YE-FDNLEKLSELYLQENRIEYIAN---GTFNALISLQVLQLDG 882
E LE L L L + + + F L L LDG
Sbjct: 106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY--LDG 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 9e-14
Identities = 123/689 (17%), Positives = 202/689 (29%), Gaps = 236/689 (34%)
Query: 241 SLRILNISSNHL---VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSS 297
S R L +S L + +P F + E + + L E + G D
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK--ILPEPTEGF--------AAD--- 51
Query: 298 NHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNA 357
DE T + EL K F L ++ L + + +G +
Sbjct: 52 --------DEPT------------TPAELV---GK-F--LGYVSSL-VEPSKVGQFDQVL 84
Query: 358 FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDL 417
L L YL N IH + A L + L + L+ K + + +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQE--NDTTLVKTKELI-----KNYITARIMAKRPF 137
Query: 418 SSNAIVEIPSALSELPFLKTLDLGENQISKIENGS------FKNLQQL--TDLRLVDNNI 469
+ SAL + + G Q+ I G F+ L+ L T LV + I
Sbjct: 138 DKKS----NSAL-----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQ--IEIGTFEKNKRLAAIRLDSNFLTD--INGVFT 525
S+ L EL + K+ + I + +N + D ++L I+
Sbjct: 189 -KFSAETLSELIRTTL---DAEKVFTQGLNILEWLEN---PSNTPDKDYLLSIPISCPLI 241
Query: 526 YLAQLLWLNLSENHLVWFDYAMV-------PGNL----KWLDIHGNYI---------SSL 565
+ QL H Y + PG L K H + S
Sbjct: 242 GVIQLA-------H-----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 566 NNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLI----KSVKPHTFFDKS 621
+++ + ++ VLF I P+T S
Sbjct: 290 ESFFVS-----------------------VRKAITVLF----FIGVRCYEAYPNTSLPPS 322
Query: 622 NLARVDIYANDITK----LDLTALRLKPVPQ-----NKTLPE--------------FYLG 658
L D N+ L ++ L + V N LP +
Sbjct: 323 ILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 659 GNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS----RGSTH-LPASEA 713
G P L +N R+ LD ++ +S + S LP +
Sbjct: 381 GPPQS-------LYGLNLTL-----RKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVA-- 424
Query: 714 AP--SQYLCPY--DIHCFALCHCCEFDACDCEMTCPKNCSCFH-----D-QNWNTNVVDC 763
+P S L P I+ + + F+A D + P + D + + ++ +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKD--IQIP----VYDTFDGSDLRVLSGSISER 478
Query: 764 SEQQISTVP---PRI-PMDATHVYLD-GNTFKTIPNHVFIGRKNMLS-LYVNNSQ---IE 814
I +P ATH+ LD G P G + L L N +
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHI-LDFG------P-----GGASGLGVLTHRNKDGTGVR 526
Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGY 843
VI+ T + YG+
Sbjct: 527 VIVAGTLDINPDDD------------YGF 543
Score = 70.1 bits (171), Expect = 5e-12
Identities = 115/722 (15%), Positives = 212/722 (29%), Gaps = 260/722 (36%)
Query: 573 DGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAND 632
D S + L SH + E L +P + F + ++ F+K + +A D
Sbjct: 2 DAYSTRPLTLSHGSL-EHV-LLVPTA---SFFIASQLQE-----QFNKILPEPTEGFAAD 51
Query: 633 ---ITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKI 689
T +L + +LG + +++ PS Q+ ++
Sbjct: 52 DEPTTPAELVG-K-------------FLG---Y-----------VSSLVEPSKVGQFDQV 83
Query: 690 MDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCS 749
++L L E + YL DIH A +
Sbjct: 84 LNL--------------CLTEFE---NCYLEGNDIHALAA-------------KLLQE-- 111
Query: 750 CFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY-- 807
N + +++ I Y+ P +K+ +L+
Sbjct: 112 -------NDTTLVKTKELIKN------------YITARIMAKRP----FDKKSNSALFRA 148
Query: 808 VNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG----YEFDNLEKLSELY--LQENRI 861
V +++ F G Q G Y F+ L L + Y L + I
Sbjct: 149 VGEGNAQLVA--IFGG----Q-------------GNTDDY-FEELRDLYQTYHVLVGDLI 188
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYLGNNPFSCSCATL 916
++ A L L LD ++ + + ++ N ++ K YL + P SC +
Sbjct: 189 KFSAE----TLSELIRTTLDAEKVFT-QGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 917 QELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDY 976
+L +++ + + +P + +T ++ T+ IA +D
Sbjct: 244 IQLAHYVV------------TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE---TD- 287
Query: 977 LPFMIITFLMFLVFLILII-FMFVFKDPFRVWLYTKYGIR------LFNFKATSSKHFGE 1029
++ F V + I +F ++ G+R + + + E
Sbjct: 288 ------SWESFFVSVRKAITVLF--------FI----GVRCYEAYPNTSLPPSILEDSLE 329
Query: 1030 DREKLP---------KDEEFVLQSIVAEL-------EH---------------GNPS--Y 1056
+ E +P E+ +Q V + + G P Y
Sbjct: 330 NNEGVPSPMLSISNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 1057 QLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSR---SDFLIEA 1113
L L R L Q S R L + FL + S L+ A
Sbjct: 388 GLNLTLRKA-KAPSGLDQS--------RIPFSERK-LKFSNRFLPV--ASPFHSHLLVPA 435
Query: 1114 AEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKT-HKLVLVEENIVPEAESDIELKP 1172
++ + L KN + ++ D + +++ T L ++ +I I P
Sbjct: 436 SD---LINKDLVKNNV--SFNAKDIQIPVYD---TFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 1173 YLKSCMKIRWGEKRFWERLRYAMPTC-------DNSKKSCNYRRNINNYTIDSGTGRRSI 1225
WE T S RN + GTG R I
Sbjct: 488 V-------------KWETTTQFKATHILDFGPGGASGLGVLTHRNKD------GTGVRVI 528
Query: 1226 EA 1227
A
Sbjct: 529 VA 530
Score = 51.6 bits (123), Expect = 2e-06
Identities = 91/643 (14%), Positives = 173/643 (26%), Gaps = 236/643 (36%)
Query: 766 QQISTVPPRIPMDATHVYLDGN---TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
ST R P+ +H G+ +P + + SQ L + F
Sbjct: 2 DAYST---R-PLTLSH----GSLEHVL-LVPT----------ASFFIASQ----LQEQF- 37
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLS--EL---YLQ--ENRIEYIANGTFNALISL 875
L G+ D+ E + EL +L + +E G F+
Sbjct: 38 -NKILP---------EPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFD----- 81
Query: 876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
QVL L F+ YL N D
Sbjct: 82 QVLNL------CLTEFE--------NCYLEGN---------------------------D 100
Query: 936 ISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFL------- 988
I + + + Y + PF +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-------PFDKKSNSALFRAVGEGN 153
Query: 989 --VFLILIIFMFVF------KDPFR--VWLYTKYGIRLFNFKATSSKHFGEDREKLPKDE 1038
+ I F D F LY Y + + + S++
Sbjct: 154 AQLVAI-------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET------------ 194
Query: 1039 EFVLQSIVAELEHGNPSYQLCLHYRDL------PHHSP---YLQQHTTSPV---VIEAAE 1086
L ++ + ++ P ++P YL + P+ +I +
Sbjct: 195 ---LSELIRTTLDAEKVFT---QGLNILEWLENPSNTPDKDYL---LSIPISCPLIGVIQ 245
Query: 1087 ASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEAL 1146
+ +V K ++ + A+ ++T + S F ++ +A+
Sbjct: 246 LAH--YVVTAK---LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 1147 T---------TKTHKLVLVEENIVPEAESDIELKPYLKSCM-KIRWGEKRFWERLRYAMP 1196
T + + + +I+ ++ + E P S M I + E+++ +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP---SPMLSIS-NLTQ--EQVQDYVN 354
Query: 1197 TCDNSKKSCNYRRNI---N---NYTIDSGTGR---------RSIEAHHTH-----PYSSQ 1236
NS + I N N + SG + R +A P+S +
Sbjct: 355 KT-NSHLPAGKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 1237 H---------IS----SHPLFKASTVISKNHNQEDLAYSSATTATPSPKPHRLHCYTNAS 1283
++ SH L AS +I +DL ++ S +
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLI-----NKDLVKNNV-----SFNAKDIQI----- 457
Query: 1284 DKPVSDHIYSSIDTPEYQEYASRTDRNSTRRMNGKVPVHQQTW 1326
PV Y + D + + + ++PV W
Sbjct: 458 --PV----YDTFDGSDLRVLSGSISERIV-DCIIRLPVK---W 490
Score = 48.9 bits (116), Expect = 1e-05
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 52/155 (33%)
Query: 38 SFVP------TDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPV-DV 90
F+P + L+ A+ L++ + + ++ ++++I PV D
Sbjct: 419 RFLPVASPFHSHLLV------PASDLINKDLVKNNVS--FNAKDIQI--------PVYDT 462
Query: 91 FSG--LRNLK-----RLT--INTRNLQWDKSKK------LDLVPGSLDGLRELQVLNISS 135
F G LR L R+ I ++W+ + + LD PG GL L N
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF 170
+ ++ I +A TL+++ + D GF
Sbjct: 523 TGVRVI-------VAG--TLDINPD-----DDYGF 543
Score = 29.6 bits (66), Expect = 9.7
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 73 LEELKISNCKLVELPV 88
L +K+ ++EL
Sbjct: 1869 LNFIKLQKIDIIELQK 1884
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 72.4 bits (178), Expect = 2e-13
Identities = 38/291 (13%), Positives = 83/291 (28%), Gaps = 55/291 (18%)
Query: 316 LIILNLSNNELTRIDAKTFKDLVF--------LQRLDLRNNSIGYIEDNAFLS-LYNLHT 366
L LNL+ +T + + L ++L + + L
Sbjct: 74 LRQLNLAGVRMTPVKCTV---VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 367 IYLSENRI-----HHITAHLFNGLYVLSKLTLSNNLLVNID----SKAFKNCSALKELDL 417
+ L N + + L + ++ L LSNN L + +++ L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 418 SSNAI-----VEIPSALSELPFLKTLDLGENQISKIENG------SFKNLQQLTDLRLVD 466
+ + + L L+ L++ N + + + L L L
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG--DTAALALARAAREHPSLELLHLYF 248
Query: 467 NNIGNLSSGMLYE-------LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
N + + +L + + V + + + L+ ++ + N
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV------SEYWSVILSEVQRNLNSWDR 302
Query: 520 INGVFTYLAQLLWLNLSENHLVWF------DYAMVPGNLKWLDIHGNYISS 564
+LL +L ++ V G ++ L S
Sbjct: 303 ARVQRH--LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351
Score = 63.2 bits (154), Expect = 2e-10
Identities = 61/395 (15%), Positives = 115/395 (29%), Gaps = 99/395 (25%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
L KL LG + L +L +Q + LSSLR LN++ +
Sbjct: 28 LENAQAIKKKLGKLGR-QVLPPSELLDHLFFHYEFQNQRF--SAEVLSSLRQLNLAGVRM 84
Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
P C ++ + L L ++L+S L G
Sbjct: 85 --TPVK----CTVVAAV-------------LGSGRHALDEVNLASCQLDP--------AG 117
Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY--------NL 364
L L+ + L ++L L+ NS+G A L +
Sbjct: 118 LRTLLPVFLR-----------------ARKLGLQLNSLG---PEACKDLRDLLLHDQCQI 157
Query: 365 HTIYLSENRIHHITA-HLFNGLYV---LSKLTLSNNLL----VNIDSKAFKNCSALKELD 416
T+ LS N + L GL ++ L+L + L + + + L+EL+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217
Query: 417 LSSNAI-----VEIPSALSELPFLKTLDLGENQIS-------KIENGSFKNLQQLTDLRL 464
++ N + + A E P L+ L L N++S + G+ + ++
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277
Query: 465 VDNNIGN---------------LSSGMLYELPSLEVLNLSKNKIHQ---IEIGTF-EKNK 505
+ + L + +L ++
Sbjct: 278 EGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG 337
Query: 506 RLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
+ A+ +G + +H
Sbjct: 338 EVRALLEQLGSSGSPSGS--WSHPQFEKGAGHHHH 370
Score = 56.3 bits (136), Expect = 3e-08
Identities = 42/252 (16%), Positives = 82/252 (32%), Gaps = 45/252 (17%)
Query: 122 LDGLRELQVLNISSSNI-----KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176
L + L + +++ K + D + I TL LS N +
Sbjct: 122 LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM---EG 178
Query: 177 AESNSGEKIECSGGMDLRILDLSHNKLRTLGDY------SGITKFRRLQNLHLENNEIS- 229
N+ + L L H LGD + + + R+LQ L++ N
Sbjct: 179 LAGNTS----------VTHLSLLHTG---LGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225
Query: 230 ----QIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH 285
+A A SL +L++ N L EG + + ++ + L
Sbjct: 226 TAALALA-RAAREHPSLELLHLYFNEL--SSEG----RQVLRDLGGAAEGGARVVVSLTE 278
Query: 286 --KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT----RIDAKTFKDLVF 339
+ + + LS + N D + L++ +L ++ A+ +
Sbjct: 279 GTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338
Query: 340 LQRLDLRNNSIG 351
++ L + S G
Sbjct: 339 VRALLEQLGSSG 350
Score = 55.9 bits (135), Expect = 4e-08
Identities = 50/362 (13%), Positives = 104/362 (28%), Gaps = 73/362 (20%)
Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
GL + + L + + E + I L + D
Sbjct: 5 GLLSAHNRAV-LAQLGCPIKNLDALEN-----AQAIKKKLGKLGRQVLPPSELLDH-LFF 57
Query: 342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL--- 398
+ +N E + L NL + ++ + + A L +G + L ++ L++ L
Sbjct: 58 HYEFQNQRF-SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA 116
Query: 399 -VNIDSKAFKNC--------------------------SALKELDLSSNAI-----VEIP 426
+ F + L LS+N + +
Sbjct: 117 GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176
Query: 427 SALSELPFLKTLDLGENQISKIENG------SFKNLQQLTDLRLVDNNIGNLS----SGM 476
L+ + L L + + G +QL +L + N G+ + +
Sbjct: 177 EGLAGNTSVTHLSLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234
Query: 477 LYELPSLEVLNLSKNKIHQI-------EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQ 529
E PSLE+L+L N++ G E R+ + +++ +
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW------SV 288
Query: 530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHN 585
+L + L D+ + ++LN + L ++ L
Sbjct: 289 ILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNP-WRKAQLLRVEGEVRALLEQLG 347
Query: 586 RI 587
Sbjct: 348 SS 349
Score = 45.5 bits (108), Expect = 9e-05
Identities = 44/348 (12%), Positives = 87/348 (25%), Gaps = 58/348 (16%)
Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS--NAIVEIP 426
L + A L + L L + + + + + LD
Sbjct: 6 LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQR 65
Query: 427 SALSELPFLKTLDLGENQIS-----KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE-L 480
+ L L+ L+L +++ + L ++ L + L
Sbjct: 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF 125
Query: 481 PSLEVLNLSKNKI-----HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL---- 531
L L N + + ++ +RL +N LT GV L + L
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA-GV-AVLMEGLAGNT 183
Query: 532 ---WLNLSENHL----VWFDYAMVPGN--LKWLDIHGNYISSLNNYYEIKDGL----SIK 578
L+L L + A + N L+ L++ N + S++
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD-TAALALARAAREHPSLE 242
Query: 579 NLDASHNRI-----LEISELSIPNS----VEVLFINNNLI---------------KSVKP 614
L N + + +L V V + S
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDR 302
Query: 615 HTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPF 662
L D+ + L+ + + +
Sbjct: 303 ARVQRHLELLLRDLEDSRGATLNPWRK-AQLLRVEGEVRALLEQLGSS 349
Score = 29.7 bits (67), Expect = 8.0
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 19/107 (17%)
Query: 824 LSSLQVLHLENNLITHFYGYEF------DNLEKLSELYLQENRI-----EYIANG-TFNA 871
+ L L+ N + + + +++ L L N + + G N
Sbjct: 125 FLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183
Query: 872 LISLQVLQLDGNRLKSFRAFD----LNTNSMLRKVYLGNNPFSCSCA 914
S+ L L L L+ N L+++ + N + A
Sbjct: 184 --SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 69.9 bits (171), Expect = 3e-12
Identities = 61/511 (11%), Positives = 151/511 (29%), Gaps = 61/511 (11%)
Query: 67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL---- 122
+ + +++ V G I + + +++ L +
Sbjct: 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121
Query: 123 -----DGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVR 173
+ +VL +S + + S D ++A N++ L+L + + D+ +
Sbjct: 122 LELIAKSFKNFKVLVLS--SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179
Query: 174 RASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
+ S I C ++S + L L L++L L +
Sbjct: 180 PDTYTSLVSLNISCLAS------EVSFSALERLVTRC-----PNLKSLKLNRAVPLEKLA 228
Query: 234 NAFVALSSLRILNISS------NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKL 287
L L + S S C+++ + +++ ++
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288
Query: 288 EQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF-KDLVFLQRLDLR 346
+L L+LS + S + +L L + + + + L+ L +
Sbjct: 289 SRLTTLNLSYATVQSYDL-VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHI-----------TAHLFNGLYVLSKLTLSN 395
+ +E N L+ L ++ + ++ + + +++ L
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406
Query: 396 NLLVNIDSKAF-----------KNCSALKELDLSSNAIVEIPSALSE-LPFLKTLDLGEN 443
D ++C L+ L LS ++ + ++ L +
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 444 QISKIENGSF-KNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIEIGTF 501
S + L L + D G+ + +L ++ L +S +
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526
Query: 502 -EKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
+K +L +D D + ++
Sbjct: 527 GQKMPKLNVEVIDERGAPDSRPESCPVERVF 557
Score = 60.3 bits (146), Expect = 3e-09
Identities = 71/480 (14%), Positives = 133/480 (27%), Gaps = 101/480 (21%)
Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVRRAS 176
L G N+ +++ ++ + L R + D A
Sbjct: 72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS--- 128
Query: 177 AESNSGEKIECSGGMDLRILDLSH-NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
++L LS T G + R L+ L L +++ ++ +
Sbjct: 129 ----------FKN---FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175
Query: 236 FVALS----SLRILNISSNHLVSLPEGL---FSSCRDISEIYAQKNSLVELSRGLFHKLE 288
SL LNIS L + C ++ + + +E L +
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235
Query: 289 QLLVLDLSS---------------------NHLSSNHIDETTFIGLI-------RLIILN 320
QL L + + L RL LN
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295
Query: 321 LSNNELTRIDAKTF-KDLVFLQRLDLRNNSIGYIEDNAFLSL----YNLHTIYLS----- 370
LS + D LQRL + + IED L +L + +
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY----IEDAGLEVLASTCKDLRELRVFPSEPF 351
Query: 371 -ENRIHHIT----AHLFNGLYVLSKLTLSNNLLVNIDSKAF----KNCSALKELDLSSNA 421
+T + G L + + + A +N + L
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCR---QMTNAALITIARNRPNMTRFRLCI-- 406
Query: 422 IVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLR--LVDNNIGNLSSGMLYE 479
I + L+ LD+G I + K+L++L L L D + +
Sbjct: 407 ---IEPKAPDYLTLEPLDIGFGAIVE----HCKDLRRL-SLSGLLTDKVFEYIGTY---- 454
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKN-KRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLS 536
+E+L+++ + + L + + D + + L + L +S
Sbjct: 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 68.3 bits (167), Expect = 4e-12
Identities = 38/266 (14%), Positives = 93/266 (34%), Gaps = 37/266 (13%)
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN----NEISQIAPNAFVALSSLRILNIS 248
L++LD+S+ +++ +G + +++ N S + +L + +S
Sbjct: 51 LKVLDISNAEIKMYSGKAGTYPNGKF-YIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS 109
Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN--HLSSNHID 306
+ ++ + F C ++ +K + L + + L S+ + N +
Sbjct: 110 EK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168
Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY---- 362
FI L + +++ + K + + ++ G +++ F +
Sbjct: 169 HFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINF-LTIEGKLDNADFKLIRDYMP 226
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-----------------------LV 399
NL ++ +S+ I F L K+ L +NL +
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVT 286
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI 425
I+ AF C L+ + + + I +
Sbjct: 287 AIEFGAFMGCDNLRYVLATGDKITTL 312
Score = 68.3 bits (167), Expect = 4e-12
Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 15/217 (6%)
Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY----IEDNAFLSLYNLHTIYLSE 371
L +L++SN E+ K + + N Y + + L + LSE
Sbjct: 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE 110
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
I +I F G L + N+ +A + + L S+ +
Sbjct: 111 K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169
Query: 432 LPF-----LKTLDLGENQISKIENGSFKNLQQLTDLRL--VDNNIGNLS-SGMLYELPSL 483
F L+T + K+E+ K Q D+ ++ + N + +P+L
Sbjct: 170 FAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
L++SK I TF + K L I+L N L I
Sbjct: 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTI 264
Score = 44.8 bits (106), Expect = 1e-04
Identities = 41/290 (14%), Positives = 87/290 (30%), Gaps = 54/290 (18%)
Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD 192
+ + ++ + V ++ + LS I++I+ F C
Sbjct: 84 VPAYAFSNVVNGVTKGKQTLEKVILS-EKIKNIEDAAFK--------------GCDN--- 125
Query: 193 LRILDLSHNKLRTLGDYSGITKFRRL---QNLHLENNEISQIAPNAFVALSSLRILNISS 249
L+I + L + + ++ AF+ L
Sbjct: 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVG 185
Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELS----RGLFHKLEQLLVLDLSSNHLSSNHI 305
+ L + + + +I +L + + + L+ LD+S + ++ I
Sbjct: 186 A-MGKLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT--I 241
Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
+ TF L+ + L +N L I + F + L S+ IE AF+ NL
Sbjct: 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLR 300
Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415
+ L + + + + F N K +
Sbjct: 301 YV-----------------------LATGDK-ITTLGDELFGNGVPSKLI 326
Score = 41.7 bits (98), Expect = 0.001
Identities = 52/320 (16%), Positives = 108/320 (33%), Gaps = 33/320 (10%)
Query: 58 LDSSITTKSFQNIY----SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSK 113
L + + F+++ SL+ L ISN ++ + + + + S
Sbjct: 32 LTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSN 91
Query: 114 KLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVR 173
+V G G + L+ + +S IK+I D F N++ + + + ++
Sbjct: 92 ---VVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLL------- 140
Query: 174 RASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
A ++S I G ++ ++ + L+ + ++
Sbjct: 141 -PEALADSVTAIFIPLG-----SSDAYRFKNRWEHFA-FIEGEPLETTIQVGA-MGKLED 192
Query: 234 NAFVALSSLRILNISSNHLVSLPEGLFSS----CRDISEIYAQKNSLVELSRGLFHKLEQ 289
A R +N + L F ++ + K + + F + +
Sbjct: 193 EIMKAGLQPRDINFLTI-EGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251
Query: 290 LLVLDLSSNHLSSNHIDETTFIGLIRLI-ILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
LL + L N L + I + F RL L L + +T I+ F L+ + +
Sbjct: 252 LLKIKLPHN-LKT--IGQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGD 307
Query: 349 SIGYIEDNAFLSLYNLHTIY 368
I + D F + IY
Sbjct: 308 KITTLGDELFGNGVPSKLIY 327
Score = 39.4 bits (92), Expect = 0.006
Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 56/231 (24%)
Query: 45 ITKLNIDCDATVLLDS--SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI 102
+T + I ++ +F LE + +L ++ + +
Sbjct: 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVG-AMGKLEDEIMKAGLQPRDINF 206
Query: 103 NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
T + D + + D + L L+IS +N +I D F + + L
Sbjct: 207 LTIEGKLDNADFKLIR----DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP---- 258
Query: 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLH 222
+ L+T+G F L
Sbjct: 259 --------------------------------------HNLKTIGQRV----FSNCGRLA 276
Query: 223 LE---NNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
++ I AF+ +LR + + + + +L + LF + IY
Sbjct: 277 GTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327
Score = 30.1 bits (68), Expect = 4.8
Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 17/213 (7%)
Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG----NLSSGMLYELPSLEVL 486
E P LK LD+ +I + + + + N+ +G+ +LE +
Sbjct: 47 EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKV 106
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
LS+ I IE F+ L ++ + + + + +
Sbjct: 107 ILSEK-IKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK 164
Query: 547 MVPG--------NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSI--- 595
L+ G + + N ++ I
Sbjct: 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDY 224
Query: 596 PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
++ L I+ ++ TF K L ++ +
Sbjct: 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257
Score = 30.1 bits (68), Expect = 5.3
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 15/143 (10%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRI---PMDATHVYL----DGNTFKTIPNHVFIG 799
+ D+ + V+D S +I + P ++Y+ F + N V G
Sbjct: 40 DFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKG 99
Query: 800 RKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL-------EKLS 852
++ + + ++ I+ I + F G +L++ + + + S
Sbjct: 100 KQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSS 158
Query: 853 ELYLQENRIEYIANGTFNALISL 875
+ Y +NR E+ A L +
Sbjct: 159 DAYRFKNRWEHFAFIEGEPLETT 181
Score = 29.4 bits (66), Expect = 9.4
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 790 KTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG---LSSLQVLHLENNLITHFYGYEFD 846
+ FI + + + + + + ++ + L +E L + D
Sbjct: 165 NRWEHFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRD 223
Query: 847 NLEKLSELYLQENRIEYIANGTFNALISLQ 876
+ L L + + I + TF L
Sbjct: 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLL 253
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 1e-10
Identities = 108/674 (16%), Positives = 202/674 (29%), Gaps = 178/674 (26%)
Query: 584 HNRILEISELSIPNS--VEVL---FINNNLIKSVK--PHTFFDKSNLARVDIYANDITKL 636
H+ E E + V F++N K V+ P + K + + + + ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 637 D--LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL--PIINNNTSPSMERQ-YPKIMD 691
L K Q + + +F + +L PI PSM + Y + D
Sbjct: 65 LRLFWTLLSK---QEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 692 -LDN---VVCKMTYSRGSTHLPASEAA----PSQYLCPYDIH--------CFALCHCCEF 735
L N V K SR +L +A P++ + I AL C
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWVAL-DVCLS 173
Query: 736 DACDCEMTCP------KNCSCFHD-----QNWNTNVVDCSEQQISTVPPRIPMDATHVYL 784
C+M KNC+ Q + D + S I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRI----- 227
Query: 785 DGNTFKTIPNHVFIGRKNMLSLY----VNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
++ + + + L V N+ + FN S ++L L T F
Sbjct: 228 --HSIQAELRRLLKSKPYENCLLVLLNVQNA--KAW--NAFNL--SCKIL-----LTTRF 274
Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SML 899
+ LS +++ + L +V L + L+ L
Sbjct: 275 KQ----VTDFLSAATTTHISLDHHSMT----LTPDEVKSL-------LLKY-LDCRPQDL 318
Query: 900 RKVYLGNNPFSCSC--ATLQE----LQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL 953
+ L NP S ++++ W N +K+ ++ S ++ P ++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRK--- 373
Query: 954 NSTTCTEYYATSSVIASIMVSD-YLPFMIITFL-----MFLVFLILIIFM---FVFKDPF 1004
+ S+ ++P ++++ + V +++ V K P
Sbjct: 374 -------MF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1005 RVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVL-QSIVAELEHGNPSYQLCLHYR 1063
+ I L K+ + E+ L +SIV +H N
Sbjct: 423 E-STISIPSIYL--------------ELKVKLENEYALHRSIV---DHYNIPKTFDSDDL 464
Query: 1064 DLPHHSPYLQQ----HTTSPVVIEAAEASRRVILVLTKNFLQ-------TEWSRS----- 1107
P+ Y H + E R V L FL+ T W+ S
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILN 522
Query: 1108 ---------DFLIEAAEASRRVILVLTKNFLQ---TEWSRSDFRSAIHEALTTKTHKLVL 1155
++ + R++ + +FL S + + AL +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAE------ 575
Query: 1156 VEENIVPEAESDIE 1169
+E I EA ++
Sbjct: 576 -DEAIFEEAHKQVQ 588
Score = 59.1 bits (142), Expect = 1e-08
Identities = 84/529 (15%), Positives = 164/529 (31%), Gaps = 152/529 (28%)
Query: 54 ATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSK 113
V L + K I+ L + NC P V L+ L + D S
Sbjct: 168 LDVCLSYKVQCKMDFKIFWL---NLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 114 KLDLVPGSL-DGLRELQ----------VL-NISSSNIKSISDDVF---CSLANIQTLNLS 158
+ L S+ LR L VL N+ ++ + F C + L +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSC-----KILLTT 272
Query: 159 RN-SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRR 217
R + D + + + + + L+ LD L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------------- 319
Query: 218 LQNLHLENNEISQIAPNAFVAL--SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
E+ P +++ S+R + ++ +C ++ I ++S
Sbjct: 320 --------REVLTTNPRR-LSIIAESIRDGLATWDNW------KHVNCDKLTTI--IESS 362
Query: 276 LVELSRGLFHKL-EQLLVLDLSSNHLSSNHIDETTFIGLIRLIIL--NLSNNELTRIDAK 332
L L + K+ ++L V S++ I I L ++ ++ +++ + K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH------------IPTILLSLIWFDVIKSDVMVVVNK 410
Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL------SENRIHH--ITAHLFNG 384
L S+ +E S ++ +IYL H I H
Sbjct: 411 ------------LHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---- 452
Query: 385 LYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF-LKTLDLGEN 443
Y + K S++L+ + F S + LK ++ E
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYF----------------------YSHIGHHLKNIEHPE- 488
Query: 444 QISKIENGSFKNLQQLTDLRLVDNNI---GNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
F+ + D R ++ I + L +L+ L K I +
Sbjct: 489 -----RMTLFRMV--FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PK 540
Query: 501 FEKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLVWFD 544
+E + + AI +FL I +T L ++ + E+ ++ +
Sbjct: 541 YE--RLVNAIL---DFLPKIEENLICSKYTDLLRIALMA--EDEAIFEE 582
Score = 52.9 bits (126), Expect = 7e-07
Identities = 98/637 (15%), Positives = 191/637 (29%), Gaps = 163/637 (25%)
Query: 375 HHITAHL-FNGLYVLSKLTLSNNLLVNIDSKAFK---NCSALKELD---LSS---NAIVE 424
HH H+ F + ++++ AF +C ++++ LS + I+
Sbjct: 1 HHHHHHMDFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 425 IPSALSELPFL--KTLDLGENQISK-IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
A+S L L E + K +E N + L + +Y
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYI-- 113
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541
E + N + + +R LL L ++N L+
Sbjct: 114 --EQRDRLYNDNQVFAKYNVSRLQPYLKLR----------------QALLELRPAKNVLI 155
Query: 542 WFDYAMVPGNLK-WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNS 598
+ G+ K W+ + +Y +++ + +I L + + P +
Sbjct: 156 ---DGV-LGSGKTWV-----ALDVCLSY-KVQCKMD--------FKIFWLNLKNCNSPET 197
Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYL- 657
V L + L D + +R D +N ++ L+ + ++K L
Sbjct: 198 V--LEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 658 --------GGNPFDCDCSMDWLPIINNNTS-----PSMERQYPKIMDLDNVVCKMTYSRG 704
N F+ C + L + + + + S
Sbjct: 250 LLNVQNAKAWNAFNLSCKI--L-LTTRFKQVTDFLSAATTTHISLDHH---------SMT 297
Query: 705 STHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCF----HD-----QN 755
T ++ +YL D L + P+ S D N
Sbjct: 298 LTP-DEVKSLLLKYL---DCRPQDLPR----EVLTTN---PRRLSIIAESIRDGLATWDN 346
Query: 756 WN-------TNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV 808
W T +++ S + P + ++ + F P I + ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVF---PPSAHIPTILLSLIWF 397
Query: 809 NNSQIEV--ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI--EYI 864
+ + +V ++N+ SL + + I + KL Y I Y
Sbjct: 398 DVIKSDVMVVVNKLHK--YSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 865 ANGTFNALISLQVLQLDG----------------NRLKSFRAFDLNTNSMLRKVYLGNNP 908
TF+ L LD R+ FR L+ + +K+ +
Sbjct: 455 IPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 909 FSCSCA---TLQELQTW---IIDNSNK----VKDGLD 935
++ S + TLQ+L+ + I DN K V LD
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 34.4 bits (78), Expect = 0.31
Identities = 46/347 (13%), Positives = 103/347 (29%), Gaps = 96/347 (27%)
Query: 1015 RLF----NFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRD------ 1064
RLF + + + F E+ L + +F++ I E + ++ + RD
Sbjct: 66 RLFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1065 ---LPHHSPYLQQHTTSPVVIEAAEASRRVIL---------VLTKNFLQTEWSRSDFLIE 1112
++ LQ + + ++ V++ +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----------------- 166
Query: 1113 AAEASRRVILVLTKNFLQTEW---SRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIE 1169
A + + +F + W + + E L +++ + N ++
Sbjct: 167 ALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQI---DPNWTSRSDHSSN 222
Query: 1170 LKPYLKSCMKIRWGEKRFWERLRYAMPTC----DN--SKK-------SCNYR-----RNI 1211
+K + S I+ +R + Y C N + K SC + R
Sbjct: 223 IKLRIHS---IQAELRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFK 275
Query: 1212 NNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTVISK--NHNQEDLAYSSATTATP 1269
D + A TH H + + +++ K + +DL T P
Sbjct: 276 QV--TDFLSA-----ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP 327
Query: 1270 ----------SPKPHRLHCYTNASDKPVSDHIYSSI---DTPEYQEY 1303
+ + + ++ I SS+ + EY++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 63.6 bits (155), Expect = 2e-10
Identities = 48/413 (11%), Positives = 117/413 (28%), Gaps = 70/413 (16%)
Query: 59 DSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
S SLE+ I + +L L +
Sbjct: 9 SPSAANPVEPIGASLEDFSIEQLP--AKTIYALGENIDLTGLNVTG-------------- 52
Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
+ + S F S + ++ + +
Sbjct: 53 --------KYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVH----ISP 100
Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR--RLQNLHLENNEISQIAPNAF 236
+ + L N ++++ + FR ++ + L + I AF
Sbjct: 101 VRVENGVLTEILKGYNEIILP-NSVKSIPKDA----FRNSQIAKVVLNEG-LKSIGDMAF 154
Query: 237 VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296
S+++ + S L L E +F C ++ + K + +L F +
Sbjct: 155 -FNSTVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA------GIE 206
Query: 297 SNHLSSN--HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
L I F+ +L + + N ++ I + F++ + + L N + I
Sbjct: 207 EVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESG-ITTVKL-PNGVTNIA 263
Query: 355 DNAFLSLYNLHTIYLSENRIHH-----ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNC 409
AF L + + + I + G L++ + ++ +
Sbjct: 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI-RILGQGLLGGN 322
Query: 410 SALKELDLSSNAIVEIPSALSELPF-------LKTLDLGENQISKIENGSFKN 455
+ + + IP+ ++++ F +K + + ++ +
Sbjct: 323 RKVTQ--------LTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYG 367
Score = 58.2 bits (141), Expect = 8e-09
Identities = 45/298 (15%), Positives = 98/298 (32%), Gaps = 15/298 (5%)
Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
+ A +SL + S L + D++ + + + K
Sbjct: 8 DSPSAANPVEPIGASLE--DFSIEQLPAKTIYALGENIDLTGLNVTGK--YDDGKQRPVK 63
Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
+ + SS+ E T + ++ + + + + L + L
Sbjct: 64 VTSEQISGFSSS--VPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIIL- 120
Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
NS+ I +AF + + + L+E + I F + ++ + L + F
Sbjct: 121 PNSVKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNST-VQEIVFPSTL-EQLKEDIF 176
Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
C LK+ DLS I ++P++ ++ + L + +I + +F QL + +
Sbjct: 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI-P 234
Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
N+ + E + + L + I F LA + + D
Sbjct: 235 ENVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290
Score = 30.1 bits (68), Expect = 5.3
Identities = 38/352 (10%), Positives = 89/352 (25%), Gaps = 115/352 (32%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDL---------RNNSIGYIEDNAFLSLYNLHTIY 368
+ + S +L + + L L++ R + + + F S +
Sbjct: 23 LEDFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQE 82
Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
++ ++ + + + + E + +P++
Sbjct: 83 VT-----------ITIEGKQKSFSVHISPVRVENGVLTEILKGYNE--------IILPNS 123
Query: 429 LSELPF-------LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
+ +P + + L E + I + +F N
Sbjct: 124 VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-------------------------S 157
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541
+++ + + Q++ F L L +T + A + + L
Sbjct: 158 TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL------ 210
Query: 542 WFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDG--LSIKNLDASHNRILEISELSIPNSV 599
P LK EI L L + IP +V
Sbjct: 211 -------PVTLK----------------EIGSQAFLKTSQL----------KTIEIPENV 237
Query: 600 EVL----FINNNL--------IKSVKPHTFFDKSNLARVDIYANDITKLDLT 639
+ F + + + ++ F+ LA V Y +
Sbjct: 238 STIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 52.9 bits (127), Expect = 3e-08
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 874 SLQVLQLDGNRLKSFR--AFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVK 931
L L GN L + D LR +LG NP+ C C L L+ W+ +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPA--LRTAHLGANPWRCDCR-LVPLRAWLAGRPERAP 88
Query: 932 DGLDISCVIDESSPPIRKEIDLNSTT 957
D+ C +PP + L
Sbjct: 89 YR-DLRC----VAPPALRGRLLPYLA 109
Score = 50.6 bits (121), Expect = 2e-07
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 32/94 (34%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQ--QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
CP CSC +VDC + +++P P+D T + L GN +P +
Sbjct: 2 CPAPCSC------AGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGL----- 50
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENN 835
+ L +L+ HL N
Sbjct: 51 -------------------LDALPALRTAHLGAN 65
Score = 46.7 bits (111), Expect = 4e-06
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 31/91 (34%)
Query: 584 HNRILEISEL--SIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
R L + L + P L + N + ++ P D L AL
Sbjct: 16 GRRGLTWASLPTAFPVDTTELVLTGNNLTAL-PPGLLDA-----------------LPAL 57
Query: 642 RLKPVPQNKTLPEFYLGGNPFDCDCSMDWLP 672
R +LG NP+ CDC + L
Sbjct: 58 R-----------TAHLGANPWRCDCRLVPLR 77
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
+C + L +S +P+A L L N ++ + G L L L N
Sbjct: 14 DCGR-RGLTWAS-----LPTAFPVD--TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
C+G ++D L + L L N ++ + P AL +LR +
Sbjct: 8 CAGT----LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAH 61
Query: 247 ISSN------HLVSLPEGLFS 261
+ +N LV L L
Sbjct: 62 LGANPWRCDCRLVPLRAWLAG 82
Score = 37.5 bits (87), Expect = 0.007
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
L L+ N LT + L L+ L N
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.6 bits (82), Expect = 0.024
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
L L+ N + + G + L L +N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 35.6 bits (82), Expect = 0.029
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
L L N++ + +L L T +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.8 bits (80), Expect = 0.052
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
SLP E+ N+L L GL L L L +N
Sbjct: 19 GLTWASLPTAFPVDTT---ELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 33.2 bits (76), Expect = 0.17
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN------SLVELSRGLFHKLEQLLVL 293
L ++ N+L +LP GL + + + N LV L L + E+
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR 90
Query: 294 DL 295
DL
Sbjct: 91 DL 92
Score = 32.1 bits (73), Expect = 0.41
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
T+L L NN+ L G+L LP+L +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.1 bits (73), Expect = 0.44
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
L ++ +N+ ++ + +L ++T +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.2 bits (68), Expect = 2.0
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWD 110
EL ++ L LP + L L+ + N W
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGA-N-PWR 68
Score = 30.2 bits (68), Expect = 2.0
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
+ + L+ N + + L + L L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.0 bits (65), Expect = 4.6
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
++L L+ N L + AL+ L +N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 51.8 bits (124), Expect = 8e-07
Identities = 55/302 (18%), Positives = 97/302 (32%), Gaps = 56/302 (18%)
Query: 141 ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH 200
SD+ ++ NL + + + G R E ++ +DLS+
Sbjct: 43 ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102
Query: 201 NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLF 260
+ + + +++ +LQNL LE +S N S+L LN+
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL------------- 149
Query: 261 SSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSS-NHLSSNHIDETTFIGLIRLIIL 319
S C SE +L L +L L+LS + H+ + L
Sbjct: 150 SGCSGFSE-----FALQTLLSS----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200
Query: 320 NLSNNELTRIDAKTFKDLVF----LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
NLS + LV L LDL ++ ++++ F + L+
Sbjct: 201 NLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSV--MLKNDCFQEFFQLNY--------- 248
Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDL----SSNAIVEIPSALS 430
L L+LS + ++ LK L + + + AL
Sbjct: 249 ------------LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP 296
Query: 431 EL 432
L
Sbjct: 297 HL 298
Score = 44.9 bits (106), Expect = 1e-04
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 13/219 (5%)
Query: 284 FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRL 343
+++L L + + N + T L + +I +Q +
Sbjct: 39 WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM 98
Query: 344 DLRNNSIGYIEDNAFLS-LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
DL N+ I + LS L + L R+ + L +L LS +
Sbjct: 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158
Query: 403 S--KAFKNCSALKELDLSSNAIV---EIPSALSEL-PFLKTLDLGENQISKIENGSF--- 453
+ +CS L EL+LS + A++ + + L+L ++
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQKSDLSTL 217
Query: 454 -KNLQQLTDLRLVD-NNIGNLSSGMLYELPSLEVLNLSK 490
+ L L L D + N ++L L+ L+LS+
Sbjct: 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256
Score = 29.8 bits (67), Expect = 5.6
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 452 SFKNLQQLTDLRLVDNNIGNLS-SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAI 510
+ ++ + L ++ I + G+L + L+ L+L ++ + T KN L +
Sbjct: 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147
Query: 511 RLDS-NFLTD--INGVFTYLAQLLWLNLSENHLV 541
L + ++ + + + ++L LNLS
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181
Score = 29.5 bits (66), Expect = 8.6
Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 47/252 (18%)
Query: 57 LLDSSITTKSFQNIYSLEELKISNC-KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL 115
L ++ + S + ++ P+ ++ + ++ ++ +
Sbjct: 54 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE------V 107
Query: 116 DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSR------NSIRDI---- 165
+ G L +LQ L++ + + +N+ LNLS +++ +
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167
Query: 166 ----------------DTLGFAVRRASAE-------------SNSGEKIECSGGMDLRIL 196
+ AV S S +L L
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227
Query: 197 DLSHNKLRTLGDYSGITKFRRLQNLHLEN-NEISQIAPNAFVALSSLRILNISSNHLVSL 255
DLS + + + + LQ+L L +I + +L+ L +
Sbjct: 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 287
Query: 256 PEGLFSSCRDIS 267
+ L + +
Sbjct: 288 LQLLKEALPHLQ 299
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 51.1 bits (121), Expect = 1e-06
Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 28/201 (13%)
Query: 359 LSLYNLHTIYLSENRIHHIT----AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE 414
I E I I + + + + +L+ L + ++I K N LK
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKS 197
Query: 415 LDLSSNAI-VEIPSAL--SELPFLKTLDLGENQISKIENGSFKNLQ---------QLTDL 462
L++ S + + + S+LP L+ L L +G + L L
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257
Query: 463 RLVDNNIGNLSSGMLYE---LPSLEVLNLSKNKIH----QIEIGTFEKNKRLAAIRLDSN 515
+VD N+ M E LP LE +++S + ++ + +K K L I + N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Query: 516 FLTDINGVFTYLAQLLWLNLS 536
+L+D + L + L + +
Sbjct: 318 YLSD--EMKKELQKSLPMKID 336
Score = 47.6 bits (112), Expect = 2e-05
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 25/163 (15%)
Query: 294 DLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF--KDLVFLQRLDLRNNSIG 351
L++ + + L L + + L + DL L++L L
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232
Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF---KN 408
Y D L S++R + L L + + N+ + F
Sbjct: 233 YGFDGDMNVFRPL----FSKDRFPN-----------LKWLGIVDAEEQNVVVEMFLESDI 277
Query: 409 CSALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQIS 446
L+ +D+S+ + + + ++ LK +++ N +S
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 41.5 bits (96), Expect = 0.001
Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 28/175 (16%)
Query: 64 TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
+ + L LKI + + L++L + + D++ L
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVE----DILGSDLP 219
Query: 124 GLRELQVLNISSSNIKSISDDVFCSLA------NIQTLNLSRNSIRDIDTLGFAVRRASA 177
L +L + +VF L N++ L + ++ +
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----VVVEMFLES 275
Query: 178 ESNSGEKIECSGGMDLRILDLSHNKLRTLGDY---SGITKFRRLQNLHLENNEIS 229
+ L +D+S L G + K + L+ ++++ N +S
Sbjct: 276 DILP----------QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 36.5 bits (83), Expect = 0.057
Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 33/162 (20%)
Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
++ G +L I L++L + + L ++ + I + L L
Sbjct: 175 NNLKIKGTNNLSIGKKPRPNLKSL----------EIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH---------------KL 287
+ ++ G ++++ G+ L
Sbjct: 225 VLYVGVEDY------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 288 EQLLVLDLSSNHLSSNHIDE--TTFIGLIRLIILNLSNNELT 327
QL +D+S+ L+ + L +N+ N L+
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 48.5 bits (115), Expect = 5e-06
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
L+L D+V L R ++ IE+N + L ++ LS NR++ +
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVV-LNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRL 185
Query: 378 T--AHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVE--------IP 426
+ + L L LS N L + K L+EL L N++ + I
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYIS 244
Query: 427 SALSELPFLKTLD 439
+ P L LD
Sbjct: 245 AIRERFPKLLRLD 257
Score = 46.1 bits (109), Expect = 3e-05
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
+ LDL A + L + IE +N+ +L L L +N + L
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE----ENIPELLSLNLSNNRLYRL 185
Query: 473 S--SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--------ING 522
S ++ + P+L++LNLS N++ K +L + LD N L D I+
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245
Query: 523 VFTYLAQLLWLN 534
+ +LL L+
Sbjct: 246 IRERFPKLLRLD 257
Score = 42.7 bits (100), Expect = 4e-04
Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 33/206 (16%)
Query: 53 DATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKS 112
A+ L + +N + + S+ + ++ +L ++ R ++
Sbjct: 73 TASALKAVNYKILDREN-RRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQA 131
Query: 113 KKL-----DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDT 167
L D + + L + ++ ++ I ++ + + +LNLS N + +D
Sbjct: 132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDD 187
Query: 168 LGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNE 227
+ V++A +L+IL+LS N+L++ + I K +L+ L L+ N
Sbjct: 188 MSSIVQKAP---------------NLKILNLSGNELKSERELDKI-KGLKLEELWLDGNS 231
Query: 228 ISQIAPN-------AFVALSSLRILN 246
+ + L L+
Sbjct: 232 LCDTFRDQSTYISAIRERFPKLLRLD 257
Score = 40.8 bits (95), Expect = 0.002
Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 18/177 (10%)
Query: 754 QNWNTNVVDCSEQQIS-----TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV 808
+ N ++D ++IS + PP ++ + + G + L L
Sbjct: 78 KAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKR-YDGSQQALDLKG 136
Query: 809 NNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN-- 866
S +++ L+ + +I +N+ +L L L NR+ + +
Sbjct: 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIE-------ENIPELLSLNLSNNRLYRLDDMS 189
Query: 867 GTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
+L++L L GN LKS R D L +++L N C T ++ T+I
Sbjct: 190 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL---CDTFRDQSTYI 243
Score = 40.0 bits (93), Expect = 0.003
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
S + L++ ++I + +++ + R + + +LL L+LS+N L
Sbjct: 128 SQQALDLKGLRSDPDL-----VAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRL 182
Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDA-KTFKDLVFLQRLDLRNNSI 350
+ L ILNLS NEL K L L+ L L NS+
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL 232
Score = 39.2 bits (91), Expect = 0.006
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGE--KIECSGGMDLRILDLSHNKLRTLG 207
+ Q L+L + S +I +L L+LS+N+L L
Sbjct: 127 GSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD 186
Query: 208 DYSGITKFR-RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVS 254
D S I + L+ L+L NE+ + L L + N L
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
Score = 31.1 bits (70), Expect = 2.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 551 NLKWLDIHGNYISSLNNYYEI-KDGLSIKNLDASHNRILEISELSI--PNSVEVLFINNN 607
L L++ N + L++ I + ++K L+ S N + EL +E L+++ N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 42.3 bits (100), Expect = 3e-04
Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 28/140 (20%)
Query: 404 KAFKNCSALKELDLSS-NAI-----VEIPSALSELPFLKTLDLGENQISKIENGSF---- 453
+ N L+E++L++ I AL ++K + + + +
Sbjct: 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89
Query: 454 KNLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNKIHQIEIGT-------- 500
K L L + N I L L SL L + +G
Sbjct: 90 KVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQS---QPLGNNVEMEIAN 145
Query: 501 -FEKNKRLAAIRLDSNFLTD 519
EKN L
Sbjct: 146 MLEKNTTLLKFGYHFTQQGP 165
Score = 35.4 bits (82), Expect = 0.063
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 40/148 (27%)
Query: 364 LHTIYLSE-NRIHHITA-HLFNGLYV---LSKLTLSNNLLVNIDSKAF----KNCSALKE 414
L + L+ I T L + K ++ + + A K + LK
Sbjct: 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97
Query: 415 LDLSSNAI-----VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
L++ SN I + + AL L L + +
Sbjct: 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQS----------------------QPL 135
Query: 470 GNLS----SGMLYELPSLEVLNLSKNKI 493
GN + ML + +L +
Sbjct: 136 GNNVEMEIANMLEKNTTLLKFGYHFTQQ 163
Score = 33.8 bits (78), Expect = 0.23
Identities = 15/151 (9%), Positives = 38/151 (25%), Gaps = 43/151 (28%)
Query: 290 LLVLDLSSNHLSSNHIDETTFIGLIR-------LIILNLSNNELTRIDAKTF----KDLV 338
L ++L++ +I T + ++ A K
Sbjct: 38 LEEVNLNNI----MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93
Query: 339 FLQRLDLRNNSIGYIEDNAFLSL-----YN--LHTIYLSENRIHHITAHLFNGLYVLSKL 391
L+ L++ +N I + L+L N L + + + + +
Sbjct: 94 TLKSLNVESNFIS---GSGILALVEALQSNTSLIELRIDNQS-QPLGNN---VEMEI--- 143
Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
+ + + L +
Sbjct: 144 -----------ANMLEKNTTLLKFGYHFTQQ 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 39.1 bits (91), Expect = 0.004
Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 308 TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTI 367
T + ++ ++ +++ + I + L +++++ L YIED
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH--YIEDGC---------- 102
Query: 368 YLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLS 418
+ + + L N + ++ + + V A + LK L LS
Sbjct: 103 ------LERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147
Score = 36.7 bits (85), Expect = 0.022
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 15/132 (11%)
Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS-IRDIDTLGFAVRRASA 177
P ++Q ++ + S I SI D L ++ + L + I D + R S
Sbjct: 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-----GCLERLSQ 108
Query: 178 ESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN-NEISQIAPNAF 236
N + + +++ T + FR L+ L L + + +
Sbjct: 109 LENLQKS--------MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ 160
Query: 237 VALSSLRILNIS 248
+SL L +
Sbjct: 161 AFKTSLPSLELK 172
Score = 36.4 bits (84), Expect = 0.024
Identities = 14/134 (10%), Positives = 42/134 (31%), Gaps = 18/134 (13%)
Query: 368 YLSENRIHHITAHL---FNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS----- 419
Y + R HL Y + + +++ +++I + ++++ L
Sbjct: 40 YHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99
Query: 420 -NAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD-------NNIGN 471
+ + + + +++ + + L +L+ +
Sbjct: 100 DGCLERLSQLENLQKSMLEMEIISC--GNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEK 157
Query: 472 LSSGMLYELPSLEV 485
+ LPSLE+
Sbjct: 158 IVQAFKTSLPSLEL 171
Score = 34.8 bits (80), Expect = 0.083
Identities = 14/97 (14%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDLVPGSLDG 124
+ Y ++ + ++ ++ + D GL+ ++++ + ++ D L+ + +
Sbjct: 56 GPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGC--LERLSQLENL 112
Query: 125 LRELQVLNISSSNIKSISDDVFCSLA---NIQTLNLS 158
+ + + I S +++D +L N++ L LS
Sbjct: 113 QKSMLEMEIISC--GNVTDKGIIALHHFRNLKYLFLS 147
Score = 31.3 bits (71), Expect = 1.4
Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR------IEYIANGTFN 870
L +Q + ++ I + L+ + ++ L + +E ++ N
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-N 111
Query: 871 ALISLQVLQLDGNR 884
S+ +++
Sbjct: 112 LQKSMLEMEIISCG 125
Score = 30.2 bits (68), Expect = 2.6
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
++Q + ++ I I + L + + + H + L +S++ + S
Sbjct: 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCL----ERLSQLENLQKS 115
Query: 276 LVELS---------RGLFH--KLEQLLVLDLS 296
++E+ +G+ L L LS
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147
Score = 30.2 bits (68), Expect = 3.4
Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 33 GGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS 92
++L P D ID + ++ I + + +E++++ C +E D
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDSCIMS--IGFDHMEGLQYVEKIRLCKCHYIE---D--G 101
Query: 93 GLRNLKRLTINTRNLQWDKSKKLDLVPG---------SLDGLRELQVLNISS-SNIKSIS 142
L L +L +++ +++++ +L R L+ L +S +K
Sbjct: 102 CLERLSQLENLQKSML-----EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156
Query: 143 DDVFCSLANIQTLNLS 158
V ++ +L L
Sbjct: 157 KIVQAFKTSLPSLELK 172
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.8 bits (82), Expect = 0.081
Identities = 13/76 (17%), Positives = 15/76 (19%), Gaps = 6/76 (7%)
Query: 693 DNVVCKMTYSRGST-----HLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKN 747
DNV + S DI L H DA
Sbjct: 115 DNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYS-ARYIG 173
Query: 748 CSCFHDQNWNTNVVDC 763
+ F V C
Sbjct: 174 GNLFTSAFTRLIVRRC 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.14
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFIN 605
++K L AS L +L +S L I
Sbjct: 21 ALKKLQAS----L---KLYADDSAPALAIK 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.34
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 720 CPYDIHCFALCHCCEFDACDCEMTCPKNCSCF----HDQNWNTNVVDCSE 765
C +I DA +C +C D + + + E
Sbjct: 635 CRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEE 684
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 33.3 bits (76), Expect = 0.34
Identities = 24/172 (13%), Positives = 59/172 (34%), Gaps = 29/172 (16%)
Query: 450 NGSFKNLQQLTDLRLVDN--NIGNLSSGMLYELPSLEVLNLSKNKIHQIE-----IGTFE 502
NG ++ DN ++ + + + + L+ +N++ K E I
Sbjct: 8 NGIMQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC 67
Query: 503 KNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYI 562
+K + L + ++D L +L+ + S L+ L++ N++
Sbjct: 68 NSKHIEKFSLANTAISDS--EARGLIELIETSPS---------------LRVLNVESNFL 110
Query: 563 SSLNNYYEIKDGL----SIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
+ + SI A + R + + + + N +L++
Sbjct: 111 TP-ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 161
Score = 32.5 bits (74), Expect = 0.55
Identities = 21/153 (13%), Positives = 59/153 (38%), Gaps = 26/153 (16%)
Query: 388 LSKLTLSNNLLVNIDS-----KAFKNCSALKELDLSSNAI-----VEIPSALSELPFLKT 437
L ++ ++N V+ + +A N +++ L++ AI + + P L+
Sbjct: 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRV 102
Query: 438 LDLGENQIS-----KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL-------PSLEV 485
L++ N ++ ++ + Q + + + + L + + ++ SL
Sbjct: 103 LNVESNFLTPELLARLLRSTLVT-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 161
Query: 486 LNLSKNKI---HQIEIGTFEKNKRLAAIRLDSN 515
+ +S + H++ +R+ RL +
Sbjct: 162 VGISFASMEARHRVSEALERNYERVRLRRLGKD 194
Score = 32.1 bits (73), Expect = 0.70
Identities = 12/118 (10%), Positives = 36/118 (30%), Gaps = 31/118 (26%)
Query: 316 LIILNLSNNELTRIDAKTFKDLV----FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
+ +L+N ++ +A+ +L+ L+ L++ +N + L
Sbjct: 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT---PELLARLLR----STLV 124
Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNID-------SKAFKNCSALKELDLSSNAI 422
+ + + N + A + +L + +S ++
Sbjct: 125 TQ-------------SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169
Score = 29.4 bits (66), Expect = 5.9
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 32/141 (22%)
Query: 128 LQVLNISSSNIKSISDDVFCSLAN-------IQTLNLSRNSIRDIDTLGFAVRRASAESN 180
L+ +NI+ N+K +S + SL I+ +L+ +I D + G S
Sbjct: 43 LKEVNIN--NMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI--ELIETSP 98
Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYS---GITKFRRLQNLHLENNEISQIAPNAFV 237
S LR+L++ N L + + +N S + +
Sbjct: 99 S-----------LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147
Query: 238 AL-------SSLRILNISSNH 251
+ SL + IS
Sbjct: 148 DMMMAIEENESLLRVGISFAS 168
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 33.0 bits (74), Expect = 0.73
Identities = 34/237 (14%), Positives = 56/237 (23%), Gaps = 31/237 (13%)
Query: 720 CP----YDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDC-------SEQQI 768
CP Y+ + + E K + + + V C E +
Sbjct: 240 CPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGV 299
Query: 769 STVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQ 828
G + + S IL F G S
Sbjct: 300 RKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTH 359
Query: 829 VLHLENNLITHF--------YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L+ + + E ++L+ EN + SL V+
Sbjct: 360 TPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVS- 418
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQ--------ELQTWIIDNSNK 929
+ S L S V + N C T+ +T II N +
Sbjct: 419 --LNITSLGLRSLKEISD-GDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGE 472
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 32.9 bits (74), Expect = 0.95
Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 1/117 (0%)
Query: 720 CPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA 779
Y C + + +D SE R +
Sbjct: 352 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 411
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836
+ + + I + + S + ++++ L V + +N+
Sbjct: 412 DTEVASNRIYWSDLSQRMICSTQLDRAH-GVSSYDTVISRDIQAPDGLAVDWIHSNI 467
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 32.7 bits (73), Expect = 1.0
Identities = 34/236 (14%), Positives = 55/236 (23%), Gaps = 31/236 (13%)
Query: 720 CP----YDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDC-------SEQQI 768
CP Y+ + + E K + + + V C E +
Sbjct: 240 CPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGV 299
Query: 769 STVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQ 828
G + + S IL F G S
Sbjct: 300 RKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTH 359
Query: 829 VLHLENNLITHF--------YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
L+ + + E ++L+ EN + SL V+
Sbjct: 360 TPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVS- 418
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQ--------ELQTWIIDNSN 928
+ S L S V + N C T+ +T II N
Sbjct: 419 --LNITSLGLRSLKEISD-GDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRG 471
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 32.7 bits (73), Expect = 1.0
Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 27/227 (11%)
Query: 548 VPGNLK--WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
V GNL+ + + S L E+ + + N L +
Sbjct: 40 VMGNLEIVLTGHNADL-SFLQWVREVTGYVLVAM-----------------NEFSTLPLP 81
Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
N ++ V+ +D V + N + L LRL Y+ N C
Sbjct: 82 N--LRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRL-TQLTEILSGGVYIEKNDKLCH 138
Query: 666 -CSMDWLPIINNNTSPSMERQYPKIMDLDNVVCK-MTYSRGSTHLPASEAAPSQYLCPYD 723
++DW I+ + + + + + + VCK + GS C
Sbjct: 139 MDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGH 198
Query: 724 IHCFALCHCCEFDACDCE-MTCPKNC-SCFHDQNWNTNVVDCSEQQI 768
CC + +C +C H + V C + +
Sbjct: 199 CFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLV 245
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis,
light-harvesting, membrane protein, chloroplast,
chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD;
2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Length = 232
Score = 31.9 bits (71), Expect = 1.0
Identities = 17/84 (20%), Positives = 25/84 (29%)
Query: 969 ASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFG 1028
S + S+ + + IL I+ V Y G L
Sbjct: 101 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGS 160
Query: 1029 EDREKLPKDEEFVLQSIVAELEHG 1052
D L D E + V EL++G
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNG 184
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 31.4 bits (70), Expect = 2.6
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Query: 656 YLGGNPFDC-DCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAA 714
+ N C ++DW I+++ + + +C T +
Sbjct: 118 RIEKNNELCYLATIDWSRILDSVEDNHIV-LNKDDNEECGDICPGTAKGKTNCPATVING 176
Query: 715 PSQYLCPYDIHCFALC------HCCEFDACDCEMTCPKNCS 749
C HC +C H C + C C NCS
Sbjct: 177 QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCS 217
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 30.7 bits (68), Expect = 2.8
Identities = 13/91 (14%), Positives = 20/91 (21%), Gaps = 9/91 (9%)
Query: 661 PFDCDCSMDWLPI--INNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQY 718
DC L + + T Y +L C+ + +
Sbjct: 87 APDCSGLPARLQVCGSDGAT-------YRDECELRAARCRGHPDLSVMYRGRCRKSCEHV 139
Query: 719 LCPYDIHCFALCHCCEFDACDCEMTCPKNCS 749
+CP C CP S
Sbjct: 140 VCPRPQSCVVDQTGSAHCVVCRAAPCPVPSS 170
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 3.0
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 12/59 (20%)
Query: 1280 TNAS---DKPVSDHIYSSIDTPEYQEYASRTD---RNSTRR----MNGKVPVHQQTWSP 1328
P D++Y +I Y EY ++ +++ + M + +P
Sbjct: 1450 KGGQAIVVHP--DYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAP 1506
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 30.1 bits (68), Expect = 4.0
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 558 HGNYISSLNNYYEIKDGLSI-KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
HG Y+ SL +Y+ S+ L S E+ ++ + + IN + VKP
Sbjct: 203 HGAYMRSLFDYFLTDLKCSLPATLSRS-----ELMSVTPNTGMSLFIINFEEGREVKP 255
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 30.6 bits (68), Expect = 4.3
Identities = 17/152 (11%), Positives = 36/152 (23%), Gaps = 9/152 (5%)
Query: 616 TFFDKSNLARVDIYANDITKLDLTALRLKPVP-QNKTLPEFYLGGNPFDCDCS-MDWLPI 673
F + D+ + + ++ T +K + F + +
Sbjct: 184 DAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASL 243
Query: 674 INNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCC 733
+ R + + ++ ++ + DI C C
Sbjct: 244 YGQLDTTKKLRDFFT---VTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN 300
Query: 734 EFDACDCEMTCPKNCSCFHDQNWNTNVVDCSE 765
C C H NT DC +
Sbjct: 301 LHATVCVYDNSKLTCECEH----NTTGPDCGK 328
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 30.6 bits (68), Expect = 4.4
Identities = 5/43 (11%), Positives = 8/43 (18%)
Query: 725 HCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ 767
C +C +C T + C
Sbjct: 154 ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC 196
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 29.1 bits (64), Expect = 5.6
Identities = 10/102 (9%), Positives = 20/102 (19%), Gaps = 16/102 (15%)
Query: 661 PFDCDCSMDWLPII--NNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQY 718
DC P+ + T + C + +R +
Sbjct: 30 APDCSNITWKGPVCGLDGKTYRNE--------------CALLKARCKEQPELEVQYQGKC 75
Query: 719 LCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNV 760
C D + N C + ++
Sbjct: 76 KKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSSEQSL 117
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG,
protein structure initiative, midwest center for STRU
genomics; 2.10A {Methanosarcina mazei}
Length = 173
Score = 29.3 bits (66), Expect = 6.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1068 HSPYLQQHTTSPV 1080
SPYL QH +PV
Sbjct: 10 KSPYLLQHAYNPV 22
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 29.7 bits (66), Expect = 7.0
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 936 ISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLIL 993
++ + S P + T VI S +VS YLPF + + ++++L
Sbjct: 169 LAFAV--SCPLLFGFNTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVL 224
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 29.9 bits (68), Expect = 7.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 709 PASEAAPSQYLCPY 722
ASE AP YL PY
Sbjct: 227 SASEPAPLLYLAPY 240
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 30.0 bits (68), Expect = 7.1
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 709 PASEAAPSQYLCPY 722
A A QYL PY
Sbjct: 228 TADSPATLQYLAPY 241
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase; methylmercury derivative,
N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus
cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A*
2am3_A* 2am4_A* 2am5_A*
Length = 343
Score = 29.7 bits (66), Expect = 7.7
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 800 RKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN 859
+ Y L Q F+ + + +E++L +E+ + L +
Sbjct: 74 HRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEY--FQATYPLLKADP 131
Query: 860 RIEYI 864
+ +
Sbjct: 132 SLWCV 136
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 29.6 bits (67), Expect = 7.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 709 PASEAAPSQYLCPY 722
AS+ A QY+ PY
Sbjct: 240 SASDPASLQYIAPY 253
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 29.6 bits (67), Expect = 8.6
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 502 EKNKRLAAIRLDSNFLTDINGVFTYLAQ 529
K+L A+RLD+ + G F + +
Sbjct: 230 ALGKKLFAVRLDTP--SSRRGNFRKIIE 255
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 29.6 bits (67), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 709 PASEAAPSQYLCPY 722
AS+AAP QYL PY
Sbjct: 235 TASDAAPLQYLAPY 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,003,501
Number of extensions: 1204751
Number of successful extensions: 14462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3500
Number of HSP's successfully gapped: 921
Length of query: 1344
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1239
Effective length of database: 3,770,088
Effective search space: 4671139032
Effective search space used: 4671139032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)