BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16378
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 116/188 (61%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
Query: 135 ISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGY 194
++ + +VT++GNILV+V+FK++K L+T++NYFL SLA AD IG ISM LFT Y I+
Sbjct: 18 LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR 77
Query: 195 WPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAW 254
W LG + CD WL++DY+ASNASV+NLL+ISFDRYFS+TRPLTYRAKRTTKRA MI AW
Sbjct: 78 WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 255 GVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYL 314
+S +LW P I W Y G+R VP EC+IQF+ + ITF TAIAAFY+PV++M LY
Sbjct: 138 VISFVLWAPAILFWQYFVGKRTVPPGECFIQFL-SEPTITFGTAIAAFYMPVTIMTILYW 196
Query: 315 RIYKETEK 322
RIYKETEK
Sbjct: 197 RIYKETEK 204
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 525 ILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRIL 577
I+VL+ T C CIP W+ Y+LCYINST+NPVCYALCN FR T+ +L
Sbjct: 392 IMVLVN--TFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLL 442
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/191 (60%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
+VT++GNILVMVS K+++ LQT++NYFLFSLA AD IG SM L+T+YT++GYWPLGP+
Sbjct: 35 LVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
VCD WLALDY+ SNASV+NLLIISFDRYF VT+PLTY KRTTK A MI AW +S IL
Sbjct: 95 VCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFIL 154
Query: 261 WPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKET 320
W P I W +I G R V ECYIQF +N +TF TAIAAFY+PV +M LY I + +
Sbjct: 155 WAPAILFWQFIVGVRTVEDGECYIQFF-SNAAVTFGTAIAAFYLPVIIMTVLYWHISRAS 213
Query: 321 EKRKKEFSNLQ 331
+ R F L+
Sbjct: 214 KSRINIFEMLR 224
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 525 ILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRIL 577
++VL+ T C+ CIPN +W Y+LCYINSTINP CYALCN F+ T+ +L
Sbjct: 406 VMVLIN--TFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 3/192 (1%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
+VTV N+LV+ + + ++ L T+ N ++ SL+VAD +GA+ MP+ +Y ++ W LG
Sbjct: 20 LVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRP 79
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
+C WL++DY+AS AS+ ++ I+ DRY SV +PL Y RT RA+ I+ AW +S L
Sbjct: 80 LCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLS-FL 138
Query: 261 WPPWIFAWPYIEGERRVPYYE-CYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKE 319
W I W + + V + C F + + +TAI FY+P +M++ Y +IYK
Sbjct: 139 WVIPILGWNHFMQQTSVRREDKCETDFYDVT-WFKVMTAIINFYLPTLLMLWFYAKIYKA 197
Query: 320 TEKRKKEFSNLQ 331
+ F L+
Sbjct: 198 VRQHCNIFEMLR 209
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 532 ITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRIL 577
I C C L F +L YINST+NP+ Y LCN+ F+ T+ RIL
Sbjct: 396 IAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 123 MVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAIS 182
++S + + + + +++ V GN+LV+ + + LQT++N F+ SLA AD +G +
Sbjct: 5 LLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLV 64
Query: 183 MPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRT 242
+P + G W G +C+ W +LD L AS+ L +I+ DRY ++T P Y++ T
Sbjct: 65 VPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMT 124
Query: 243 TKRAACMIVTAWGVS-MILWPPWIFAWPYIEGERRVPYYE---CYIQFIETNHYITFLTA 298
RA +I T W +S ++ + P + W E + + Y+ C F+ TN ++
Sbjct: 125 RARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGC-CDFV-TNRAYAIASS 182
Query: 299 IAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRI 346
I +FYIP+ +MIF+ LR+Y+E +++ ++ +SKR TSR+
Sbjct: 183 IISFYIPLLIMIFVALRVYREAKEQIRKIDR--------ASKRKTSRV 222
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 537 ECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
+ +P+ L+ F +L Y NS +NP+ Y D FR + R+L
Sbjct: 260 DLVPDWLFVAFNWLGYANSAMNPIIYCRSPD-FRKAFKRLLA 300
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 123 MVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAIS 182
++S + + + + +++ V GN+LV+ + + LQT++N F+ SLA AD +G +
Sbjct: 5 LLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLV 64
Query: 183 MPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRT 242
+P + G W G +C+ W +LD L AS+ L +I+ DRY ++T P Y++ T
Sbjct: 65 VPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMT 124
Query: 243 TKRAACMIVTAWGVS-MILWPPWIFAWPYIEGERRVPYYE---CYIQFIETNHYITFLTA 298
RA +I T W +S ++ + P + W E + + Y+ C F+ TN ++
Sbjct: 125 RARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGC-CDFV-TNRAYAIASS 182
Query: 299 IAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPF 353
I +FYIP+ +MIF+ LR+Y+E +++ ++ +SKR + R+ +
Sbjct: 183 IISFYIPLLIMIFVALRVYREAKEQIRKIDR--------ASKRKRVMLMREHKAL 229
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 44 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 103
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 104 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 163
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 164 TSFLPIQMHWYRATHQEAINCYANETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 222
Query: 317 YKETEKRKKE------------FSNLQAAGKKDSSKRSTSRINRKPR 351
++E +++ ++ S ++ G+ R +S+ K
Sbjct: 223 FQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEH 269
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 52 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 111
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 112 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 171
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 172 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 230
Query: 317 YKETEKRKKEFSNLQ 331
++E +++ F L+
Sbjct: 231 FQEAKRQLNIFEMLR 245
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 51 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 110
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 111 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 170
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 171 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 229
Query: 317 YKETEKRKKEFSNLQ 331
++E +++ F L+
Sbjct: 230 FQEAKRQLNIFEMLR 244
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 52 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 111
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 112 FWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 171
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 172 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 230
Query: 317 YKETEKRKKEFSNLQ 331
++E +++ F L+
Sbjct: 231 FQEAKRQLNIFEMLR 245
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 45 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 104
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 105 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 164
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 165 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 223
Query: 317 YKETEKRKKE------------FSNLQAAGKKDSSKRSTSRINRKPR 351
++E +++ ++ S ++ G+ R +S+ K
Sbjct: 224 FQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEH 270
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 21 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 80
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 81 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 140
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 141 TSFLPIQMHWYRATHQEAINCYANETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 199
Query: 317 YKETEKRKKE------------FSNLQAAGKKDSSKRSTSRINRKPRP 352
++E +++ ++ S ++ G+ R +S+ K
Sbjct: 200 FQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 247
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 4/195 (2%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P ++ W G
Sbjct: 20 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGN 79
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 80 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 139
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 140 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 198
Query: 317 YKETEKRKKEFSNLQ 331
++E +++ F L+
Sbjct: 199 FQEAKRQLNIFEMLR 213
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 16/228 (7%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + + W G
Sbjct: 193 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN 252
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 253 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 312
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 313 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 371
Query: 317 YKETEKRKKE------------FSNLQAAGKKDSSKRSTSRINRKPRP 352
++E +++ ++ S ++ G+ R +S+ K
Sbjct: 372 FQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 419
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 4/190 (2%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + + W G
Sbjct: 16 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN 75
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS-M 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 76 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 135
Query: 259 ILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y E F TN ++I +FY+P+ +M+F+Y R+
Sbjct: 136 TSFLPIQMHWYRATHQEAINCYAEETCCDFF-TNQAYAIASSIVSFYVPLVIMVFVYSRV 194
Query: 317 YKETEKRKKE 326
++E +++ ++
Sbjct: 195 FQEAKRQLQK 204
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTIL--GYWP 196
++ V GN LV ++ ++ LQT +NY + SLAVAD + + MP + VY + G W
Sbjct: 48 LILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP-WVVYLEVTGGVWN 106
Query: 197 LGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYR---AKRTTKRAACMIVTA 253
+ CD ++ LD + AS+ NL IS DRY +V P+ Y+ + + +R A MI
Sbjct: 107 FSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAV 166
Query: 254 WGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLY 313
W ++ + P +F + G+ V C I +N +++ +FY+P V + +Y
Sbjct: 167 WVLAFAVSCPLLFGFN-TTGDPTV----CSI----SNPDFVIYSSVVSFYLPFGVTVLVY 217
Query: 314 LRIYKETEKRKKE 326
RIY ++R+++
Sbjct: 218 ARIYVVLKQRRRK 230
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 533 TTCSEC-IPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
T C C + L+ +L Y+NS +NPV Y N FR +++IL+
Sbjct: 425 THCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 9/216 (4%)
Query: 134 TISNYFLIVTV---LGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYT 190
TI +L V V LGN LVM ++T +N ++F+LA+AD + +++P
Sbjct: 127 TIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDI 185
Query: 191 ILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMI 250
+LG+WP G +C T +A+DY S L +S DRY ++ P+ RT+ +A +
Sbjct: 186 LLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVN 245
Query: 251 VTAWGVSMILW-PPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVM 309
V W ++ ++ P I +E E EC ++ Y + AI F V
Sbjct: 246 VAIWALASVVGVPVAIMGSAQVEDEE----IECLVEIPTPQDYWGPVFAICIFLFSFIVP 301
Query: 310 IFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSR 345
+ + Y +R + L + +KD + R +R
Sbjct: 302 VLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITR 337
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
++ +LGN+LV + ++ LQ ++NYF+ SLA AD +G +++P F + G+
Sbjct: 18 VLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIP-FAITISTGFCA-ACH 75
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
C + + +S+ +LL I+ DRY ++ PL Y T RAA +I W +S +
Sbjct: 76 GCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAI 135
Query: 261 WPPWIFAWPYIE------------GERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSV 308
+ W GE +V C + + +Y+ + A +P+ +
Sbjct: 136 GLTPMLGWNNCGQPKEGKNHSQGCGEGQV---ACLFEDVVPMNYMVYFNFFACVLVPLLL 192
Query: 309 MIFLYLRIYKETEKRKKEFSNLQAAGKKDSS 339
M+ +YLRI+ ++ K+ + G++ S
Sbjct: 193 MLGVYLRIFAAARRQLKQMESQPLPGERARS 223
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
++ +LGN+LV + ++ LQ ++NYF+ SLA AD A+G +++P F + G+
Sbjct: 18 VLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-FAITISTGFCA-ACH 75
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
C + + +S+ +LL I+ DRY ++ PL Y T RA +I W +S +
Sbjct: 76 GCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 135
Query: 261 WPPWIFAWPYI----EGERRVP-----YYECYIQFIETNHYITFLTAIAAFYIPVSVMIF 311
+ W EG++ C + + +Y+ + A +P+ +M+
Sbjct: 136 GLTPMLGWNNCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLG 195
Query: 312 LYLRIYKETEKRKKEFSNLQAAGKKDSS 339
+YLRI+ ++ K+ + G++ S
Sbjct: 196 VYLRIFLAARRQLKQMESQPLPGERARS 223
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 25/235 (10%)
Query: 134 TISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILG 193
T+ ++ +LGN+LV + ++ LQ ++NYF+ SLA AD A+G +++P F + G
Sbjct: 36 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-FAITISTG 94
Query: 194 YWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTA 253
+ C + + +S+ +LL I+ DRY ++ PL Y T RA +I
Sbjct: 95 FCA-ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 153
Query: 254 WGVSMILWPPWIFAWPYIE------------GERRVPYYECYIQFIETNHYITFLTAIAA 301
W +S + + W GE +V C + + +Y+ + A
Sbjct: 154 WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVA---CLFEDVVPMNYMVYFNFFAC 210
Query: 302 FYIPVSVMIFLYLRIYKETEKRKKEFS--------NLQAAGKKDSSKRSTSRINR 348
+P+ +M+ +YLRI+ ++ + NL+ K D++ + + +
Sbjct: 211 VLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTK 265
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 134 TISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILG 193
T+ ++ +LGN+LV + ++ LQ ++NYF+ SLA AD A+G +++P F + G
Sbjct: 26 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-FAITISTG 84
Query: 194 YWPLGPMVCDTWLALD---YLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMI 250
+ C L + + + +S+ +LL I+ DRY ++ PL Y T RA +I
Sbjct: 85 FCA----ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGII 140
Query: 251 VTAWGVSMILWPPWIFAWPYIE------------GERRVPYYECYIQFIETNHYITFLTA 298
W +S + + W GE +V C + + +Y+ +
Sbjct: 141 AICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVA---CLFEDVVPMNYMVYFNF 197
Query: 299 IAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQ 331
A +P+ +M+ +YLRI+ ++ F L+
Sbjct: 198 FACVLVPLLLMLGVYLRIFLAARRQLNIFEMLR 230
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 17/211 (8%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
++ +LGN+LV + ++ LQ ++NYF+ S A AD +G +++P F + G+
Sbjct: 18 VLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP-FAIAISTGFCA-ACH 75
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
C + + +S+ +LL I+ DRY ++ PL Y T RA +I W +S +
Sbjct: 76 GCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 135
Query: 261 WPPWIFAWPYIE------------GERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSV 308
+ W GE +V C + + +Y+ + A +P+ +
Sbjct: 136 GLTPMLGWNNCGQPKEGKAHSQGCGEGQV---ACLFEDVVPMNYMVYFNFFACVLVPLLL 192
Query: 309 MIFLYLRIYKETEKRKKEFSNLQAAGKKDSS 339
M+ +YLRI+ ++ K+ + G++ S
Sbjct: 193 MLGVYLRIFLAARRQLKQMESQPLPGERARS 223
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
+V ++GN LVM ++T +N ++F+LA+AD A+ +MP + ++ WP G
Sbjct: 33 FVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALAD-ALVTTTMPFQSTVYLMNSWPFGD 91
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAW----- 254
++C L++DY S+ L ++S DRY +V P+ RT +A + + W
Sbjct: 92 VLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSS 151
Query: 255 -GVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNH-----YITFLTAIAAFYIPVSV 308
G+S I+ + V EC +QF + ++ ++ I AF IPV +
Sbjct: 152 VGISAIVLGG-------TKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLI 204
Query: 309 MIFLY 313
+I Y
Sbjct: 205 IIVCY 209
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
Query: 131 TLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYT 190
T+ + + +V + GN LVM ++T +N ++F+LA+AD A+ ++P +V
Sbjct: 19 TIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNY 77
Query: 191 ILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMI 250
++G WP G ++C +++DY S+ L +S DRY +V P+ RT + A +
Sbjct: 78 LMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVN 137
Query: 251 VTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIA----AFYIPV 306
V W +S + P +F + R +C + F Y L I AF +PV
Sbjct: 138 VCNWILSSAIGLPVMFM---ATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPV 194
Query: 307 SVMIFLY 313
++ Y
Sbjct: 195 LIITVCY 201
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 525 ILVLLKPITTCSECIPNGL-WDFFYYLCYINSTINPVCYALCNDAFRATY 573
I V++K + T E + W F L Y NS +NPV YA ++ F+ +
Sbjct: 401 IYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF 450
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 16/180 (8%)
Query: 142 VTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMV 201
V +LGN+LVM L+T +N ++F+LA+AD A+ ++P + ++ WP G ++
Sbjct: 27 VGLLGNVLVMFGIVRYTKLKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGELL 85
Query: 202 CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAA----CMIVTAWGVS 257
C L++DY S+ L ++S DRY +V P+ RT +A C+ V A GV
Sbjct: 86 CKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVG 145
Query: 258 MILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIA----AFYIPVSVMIFLY 313
+ P + A + R C +QF + Y +T I AF +P+ ++ Y
Sbjct: 146 V---PIMVMA----VTQPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCY 198
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 8/203 (3%)
Query: 154 FKIDKTLQTISNYFLFSLAVADFAIGAI-SMPLFTVYTILGYWPLGPMVCDTWLALDYLA 212
F K+LQT +N F+ +LA +DF + PL T+ L W G C + + +
Sbjct: 59 FTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 118
Query: 213 SNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWP--PWIFAWPY 270
S++ + +IS DRY + RP+ K + +RA MI+ W S +LW P IF W
Sbjct: 119 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS-VLWAIGP-IFGWGA 176
Query: 271 --IEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFS 328
+EG ++ YI T I F+ P+ ++ F Y I +KE +
Sbjct: 177 YTLEGVLCNCSFD-YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMA 235
Query: 329 NLQAAGKKDSSKRSTSRINRKPR 351
+ +++ + N + R
Sbjct: 236 AMAKRLNAKELRKAQAGANAEMR 258
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 8/203 (3%)
Query: 154 FKIDKTLQTISNYFLFSLAVADFAIGAI-SMPLFTVYTILGYWPLGPMVCDTWLALDYLA 212
F K+LQT +N F+ +LA +DF + PL T+ L W G C + + +
Sbjct: 58 FTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 117
Query: 213 SNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWP--PWIFAWPY 270
S++ + +IS DRY + RP+ K + +RA MI+ W S +LW P IF W
Sbjct: 118 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS-VLWAIGP-IFGWGA 175
Query: 271 --IEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFS 328
+EG ++ YI T I F+ P+ ++ F Y I +KE +
Sbjct: 176 YTLEGVLCNCSFD-YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMA 234
Query: 329 NLQAAGKKDSSKRSTSRINRKPR 351
+ +++ + N + R
Sbjct: 235 AMAKRLNAKELRKAQAGANAEMR 257
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 135 ISNYFLIVTVLG---NILVMVSFKIDKTLQTISNYFLFSLAVADF--AIGAISMPLFTVY 189
++ Y ++ +LG N L + K L+T NY L +LAVAD G + L+T
Sbjct: 41 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-- 98
Query: 190 TILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249
++ GY+ GP C+ L ++ +L++++ +RY V +P++ + A
Sbjct: 99 SLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 157
Query: 250 IVTAWGVSMILWPPWIFAWP-YI-EGERRVPYYECYIQFIETNH--YITFLTAIAAFYIP 305
+ W +++ P + W YI EG + + Y ETN+ ++ ++ + F IP
Sbjct: 158 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF-VVHFIIP 216
Query: 306 VSVMIFLYLRI---YKETEKRKKEFSNLQAAGKK 336
+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 217 LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 250
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 135 ISNYFLIVTVLG---NILVMVSFKIDKTLQTISNYFLFSLAVADF--AIGAISMPLFTVY 189
++ Y ++ +LG N L + K L+T NY L +LAVAD G + L+T
Sbjct: 41 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-- 98
Query: 190 TILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249
++ GY+ GP C+ L ++ +L++++ +RY V +P++ + A
Sbjct: 99 SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 157
Query: 250 IVTAWGVSMILWPPWIFAWP-YI-EGERRVPYYECYIQFIETNH--YITFLTAIAAFYIP 305
+ W +++ P + W YI EG + + Y ETN+ ++ ++ + F IP
Sbjct: 158 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF-VVHFIIP 216
Query: 306 VSVMIFLYLRI---YKETEKRKKEFSNLQAAGKK 336
+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 217 LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 250
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 135 ISNYFLIVTVLG---NILVMVSFKIDKTLQTISNYFLFSLAVADF--AIGAISMPLFTVY 189
++ Y ++ +LG N L + K L+T NY L +LAVAD G + L+T
Sbjct: 40 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-- 97
Query: 190 TILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249
++ GY+ GP C+ L ++ +L++++ +RY V +P++ + A
Sbjct: 98 SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 156
Query: 250 IVTAWGVSMILWPPWIFAWP-YI-EGERRVPYYECYIQFIETNH--YITFLTAIAAFYIP 305
+ W +++ P + W YI EG + + Y ETN+ ++ ++ + F IP
Sbjct: 157 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF-VVHFIIP 215
Query: 306 VSVMIFLYLRI---YKETEKRKKEFSNLQAAGKK 336
+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 216 LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 249
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 135 ISNYFLIVTVLG---NILVMVSFKIDKTLQTISNYFLFSLAVADF--AIGAISMPLFTVY 189
++ Y ++ +LG N L + K L+T NY L +LAVAD G + L+T
Sbjct: 41 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-- 98
Query: 190 TILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249
++ GY+ GP C+ L ++ +L++++ +RY V +P++ + A
Sbjct: 99 SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 157
Query: 250 IVTAWGVSMILWPPWIFAWP-YI-EGERRVPYYECYIQFIETNH--YITFLTAIAAFYIP 305
+ W +++ P + W YI EG + + Y ETN+ ++ ++ + F IP
Sbjct: 158 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF-VVHFIIP 216
Query: 306 VSVMIFLYLRI---YKETEKRKKEFSNLQAAGKK 336
+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 217 LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 250
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 135 ISNYFLIVTVLG---NILVMVSFKIDKTLQTISNYFLFSLAVADF--AIGAISMPLFTVY 189
++ Y ++ +LG N L + K L+T NY L +LAVAD G + L+T
Sbjct: 40 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-- 97
Query: 190 TILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249
++ GY+ GP C+ L ++ +L++++ +RY V +P++ + A
Sbjct: 98 SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 156
Query: 250 IVTAWGVSMILWPPWIFAWP-YI-EGERRVPYYECYIQFIETNH--YITFLTAIAAFYIP 305
+ W +++ P + W YI EG + + Y ETN+ ++ ++ + F IP
Sbjct: 157 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF-VVHFIIP 215
Query: 306 VSVMIFLYLRI---YKETEKRKKEFSNLQAAGKK 336
+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 216 LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 249
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 135 ISNYFLIVTVLG---NILVMVSFKIDKTLQTISNYFLFSLAVADF--AIGAISMPLFTVY 189
++ Y ++ +LG N L + K L+T NY L +LAVAD G + L+T
Sbjct: 41 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-- 98
Query: 190 TILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249
++ GY+ GP C+ L ++ +L++++ +RY V +P++ + A
Sbjct: 99 SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 157
Query: 250 IVTAWGVSMILWPPWIFAWP-YI-EGERRVPYYECYIQFIETNH--YITFLTAIAAFYIP 305
+ W +++ P + W YI EG + + Y ETN+ ++ ++ + F IP
Sbjct: 158 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF-VVHFIIP 216
Query: 306 VSVMIFLYLRI---YKETEKRKKEFSNLQAAGKK 336
+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 217 LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 250
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 157 DKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNAS 216
K ++T++NYFL +LA A+ ++ A + + Y + W G C A AS
Sbjct: 60 HKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFAS 119
Query: 217 VLNLLIISFDRYFSVTRPLTYRAKRT-TKRAACMIVTAWGVSMIL 260
+ ++ ++FDRY ++ PL R T TK C+I W ++++L
Sbjct: 120 IYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVI---WVLALLL 161
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 132 LQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTI 191
L TI + + ++GN LV++ K L+++++ + L+VAD I++P + V +
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV 109
Query: 192 LGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIV 251
W G +C + + +SV L IS DRY ++ + R + V
Sbjct: 110 AN-WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV 168
Query: 252 TAWGVSMIL-WPPWIFA 267
W +++L P +IFA
Sbjct: 169 GVWIPALLLTIPDFIFA 185
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 132 LQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTI 191
L TI + + ++GN LV++ K L+++++ + L+VAD + I++P + V +
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL-LFVITLPFWAVDAV 109
Query: 192 LGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIV 251
W G +C + + +SV L IS DRY ++ + R + V
Sbjct: 110 AN-WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV 168
Query: 252 TAWGVSMIL-WPPWIFA 267
W +++L P +IFA
Sbjct: 169 GVWIPALLLTIPDFIFA 185
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 132 LQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTI 191
L TI + + ++GN LV++ K L+++++ + L+VAD I++P + V +
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV 109
Query: 192 LGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIV 251
W G +C + + +SV L IS DRY ++ + R + V
Sbjct: 110 AN-WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV 168
Query: 252 TAWGVSMIL-WPPWIFA 267
W +++L P +IFA
Sbjct: 169 GVWIPALLLTIPDFIFA 185
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGY-WPLG 198
+V++ NI+ +V F + ++ + ++ LA AD ++ +P Y G W G
Sbjct: 31 FVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFG 89
Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
+C A Y AS+L + +IS DR+ +V P+ + RT RA+ + W +++
Sbjct: 90 SELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAI 149
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 144 VLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCD 203
+L NI V+++ K YF+ +LA++D G +T +L +
Sbjct: 78 ILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVA----YTANLLLSGATTYKLTPA 133
Query: 204 TWLALD---YLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
W + ++A +ASV +LL I+ +RY ++ + + R +I W +S+IL
Sbjct: 134 QWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNF-RLFLLISACWVISLIL 192
Query: 261 WPPWIFAWPYIEG----ERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
I W I +P Y HYI F T + F + + ++ LY RI
Sbjct: 193 GGLPIMGWNCISALSSCSTVLPLYH--------KHYILFCTTV--FTLLLLSIVILYCRI 242
Query: 317 YKETEKR 323
Y R
Sbjct: 243 YSLVRTR 249
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 545 DFFYYLCYINSTINPVCYALCNDAFRATYIRIL 577
++F L +NS NP+ Y L N R +IRI+
Sbjct: 459 EYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM 491
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 33/216 (15%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTIS---NYFLFSLAVADFAIGAISMP--LFTVYTILG 193
+V +GN + + + K+LQ++ +Y L SLA++D I ++MP L+ +
Sbjct: 42 LFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHH 101
Query: 194 YWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTA 253
W G C + L + A+ LN+ +S RY ++ P + + R I
Sbjct: 102 PWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAI 161
Query: 254 WGVSMILWPPWIFAW------------------PYIEGE--RRVPYYECYIQFIETNHYI 293
W S +L P +F P ++ + V ++ F+ I
Sbjct: 162 WLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVI 221
Query: 294 TFLTAIAAFYIPVSVMIF--------LYLRIYKETE 321
+ L + A + V V IF L L+IYK+TE
Sbjct: 222 SILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTE 257
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 543 LWDFFYY-------LCYINSTINPVCYALCNDAFRATYIRIL 577
L+DF++Y L Y +S INP+ Y L + FR ++ L
Sbjct: 444 LFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTL 485
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 215 ASVLNLLIISFDRYFSVTRPLTYRAKRTTKR 245
+S+++L IS DRY+S+T+ + Y KRT +R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 215 ASVLNLLIISFDRYFSVTRPLTYRAKRTTKR 245
+S+++L IS DRY+S+T+ + Y KRT +R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
++++LGN LVM+ + +++++ +L +LA+AD A+++P++ + G W G
Sbjct: 23 LLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLF-ALTLPIWAASKVNG-WIFGTF 80
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSV---TRPLTYRAKRTTKRAACMIVTAWGVS 257
+C L + + +L L IS DRY ++ TR LT KR + C+ WG+S
Sbjct: 81 LCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLT--QKRHLVKFVCL--GCWGLS 136
Query: 258 MILWPPW 264
M L P+
Sbjct: 137 MNLSLPF 143
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 215 ASVLNLLIISFDRYFSVTRPLTYRAKRTTKR 245
+S+++L IS RY+S+T+ + Y KRT +R
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 543 LWDFFYYLCYINSTINPVCYALCNDAFRATY 573
++ F LC +NST+NP+ YAL + R +
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAF 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,677,454
Number of Sequences: 62578
Number of extensions: 517472
Number of successful extensions: 1293
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 104
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)