Query psy16378
Match_columns 578
No_of_seqs 427 out of 2961
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:47:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4220|consensus 100.0 6.2E-53 1.3E-57 403.9 22.5 216 90-334 19-234 (503)
2 KOG4219|consensus 100.0 2E-44 4.3E-49 347.3 17.7 200 95-324 29-240 (423)
3 PHA03234 DNA packaging protein 100.0 8E-39 1.7E-43 322.8 16.2 192 97-322 28-226 (338)
4 PHA02834 chemokine receptor-li 100.0 9.4E-37 2E-41 307.9 16.3 190 99-323 26-219 (323)
5 PHA03235 DNA packaging protein 100.0 3E-36 6.5E-41 310.7 17.4 195 98-323 29-234 (409)
6 PHA02638 CC chemokine receptor 100.0 2.3E-35 5E-40 305.6 19.6 193 100-323 97-303 (417)
7 PHA03087 G protein-coupled che 100.0 7.3E-34 1.6E-38 289.6 21.2 193 98-323 37-233 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 6.2E-31 1.3E-35 256.8 14.8 180 146-326 1-181 (257)
9 KOG2087|consensus 99.9 4.5E-25 9.9E-30 211.6 13.7 187 133-324 28-223 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.8 7.8E-20 1.7E-24 177.7 9.9 174 142-325 3-176 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.7 2.8E-17 6E-22 166.2 13.2 190 138-328 5-227 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.7 7.1E-17 1.5E-21 159.3 12.1 187 139-326 3-190 (274)
13 PF05296 TAS2R: Mammalian tast 99.4 2.8E-12 6E-17 127.5 16.5 199 130-328 7-215 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 99.4 1E-12 2.2E-17 129.6 9.5 181 141-325 6-195 (283)
15 PF10321 7TM_GPCR_Srt: Serpent 99.2 1.1E-10 2.3E-15 115.5 12.8 186 98-326 29-228 (313)
16 PF05462 Dicty_CAR: Slime mold 99.2 7.2E-10 1.6E-14 109.0 16.4 145 130-287 7-151 (303)
17 PF11710 Git3: G protein-coupl 99.0 1.8E-08 3.9E-13 93.5 15.3 162 158-326 30-200 (201)
18 PF10317 7TM_GPCR_Srd: Serpent 98.6 8.7E-07 1.9E-11 88.2 14.9 128 134-267 3-142 (292)
19 PF03402 V1R: Vomeronasal orga 98.4 4.4E-07 9.5E-12 87.0 6.3 167 159-328 6-182 (265)
20 KOG4193|consensus 98.2 6.1E-06 1.3E-10 88.5 10.6 168 137-324 327-496 (610)
21 PF10292 7TM_GPCR_Srab: Serpen 98.2 8.1E-05 1.7E-09 75.2 18.3 150 134-288 21-177 (324)
22 PF10327 7TM_GPCR_Sri: Serpent 98.0 0.00039 8.4E-09 69.4 18.4 194 131-327 10-227 (303)
23 PF10326 7TM_GPCR_Str: Serpent 98.0 2.1E-06 4.4E-11 86.4 0.7 125 134-259 3-138 (307)
24 PF00002 7tm_2: 7 transmembran 97.9 3.3E-06 7.1E-11 81.8 1.7 132 131-267 2-133 (242)
25 PF10318 7TM_GPCR_Srh: Serpent 97.8 0.0012 2.5E-08 66.3 17.8 138 130-269 4-150 (302)
26 PF02118 Srg: Srg family chemo 97.7 0.00014 3E-09 71.9 9.6 186 136-325 4-200 (275)
27 PF02101 Ocular_alb: Ocular al 97.7 0.00015 3.3E-09 71.3 9.4 181 165-363 68-259 (405)
28 PF10316 7TM_GPCR_Srbc: Serpen 97.5 0.0011 2.4E-08 64.4 12.1 120 132-251 8-130 (273)
29 KOG4564|consensus 97.2 0.0045 9.8E-08 64.0 13.0 158 154-324 169-338 (473)
30 PF10319 7TM_GPCR_Srj: Serpent 96.8 0.28 6E-06 48.2 20.1 121 133-253 8-139 (310)
31 PF04789 DUF621: Protein of un 96.6 0.083 1.8E-06 50.1 14.1 167 154-322 39-215 (305)
32 PF02117 7TM_GPCR_Sra: Serpent 96.3 0.1 2.2E-06 52.7 14.5 84 153-237 44-136 (328)
33 PF03125 Sre: C. elegans Sre G 96.0 0.25 5.5E-06 50.8 15.7 36 205-240 126-161 (365)
34 PF02175 7TM_GPCR_Srb: Serpent 95.9 0.56 1.2E-05 43.8 15.6 45 196-240 79-123 (236)
35 PF10322 7TM_GPCR_Sru: Serpent 95.7 0.08 1.7E-06 52.5 10.2 125 198-324 99-226 (307)
36 PF06681 DUF1182: Protein of u 94.3 0.14 3E-06 46.4 6.6 40 197-236 112-151 (226)
37 PF03383 Serpentine_r_xa: Caen 93.8 0.041 8.8E-07 48.0 2.2 62 206-267 48-109 (153)
38 PF02076 STE3: Pheromone A rec 92.2 4.4 9.5E-05 39.9 14.1 122 158-287 20-143 (283)
39 PF01534 Frizzled: Frizzled/Sm 92.1 4.2 9.2E-05 40.8 14.0 153 132-289 11-176 (328)
40 PHA02638 CC chemokine receptor 77.7 50 0.0011 34.6 13.7 22 306-327 373-394 (417)
41 PF13853 7tm_4: Olfactory rece 72.7 0.2 4.3E-06 44.0 -4.9 79 247-325 4-89 (144)
42 PF11970 Git3_C: G protein-cou 61.1 1.8 3.9E-05 33.1 -1.0 44 525-568 21-73 (76)
43 PF10325 7TM_GPCR_Srz: Serpent 60.1 92 0.002 30.2 10.6 110 208-325 88-198 (267)
44 KOG4289|consensus 52.8 11 0.00024 44.2 2.9 48 527-574 2352-2399(2531)
45 COG1862 YajC Preprotein transl 47.3 36 0.00078 27.3 4.3 33 302-334 12-44 (97)
46 PF15086 UPF0542: Uncharacteri 38.9 80 0.0017 23.6 4.6 33 295-327 22-55 (74)
47 PF13965 SID-1_RNA_chan: dsRNA 31.4 7.4E+02 0.016 27.2 13.9 45 249-293 492-537 (570)
48 PRK06531 yajC preprotein trans 28.8 83 0.0018 26.1 3.8 30 304-333 7-36 (113)
49 PF05568 ASFV_J13L: African sw 27.8 1.9E+02 0.0042 24.8 5.7 50 278-330 13-63 (189)
50 PF02699 YajC: Preprotein tran 27.6 1.2E+02 0.0026 23.5 4.3 26 306-331 9-34 (82)
51 PF05934 MCLC: Mid-1-related c 27.1 3.3E+02 0.0072 28.8 8.4 53 96-149 176-228 (549)
52 TIGR00739 yajC preprotein tran 26.9 1.1E+02 0.0024 23.9 4.0 28 306-333 10-37 (84)
53 PRK04989 psbM photosystem II r 26.4 1E+02 0.0022 19.5 2.8 23 294-316 7-29 (35)
54 PRK05886 yajC preprotein trans 26.2 1.5E+02 0.0032 24.5 4.8 31 303-333 7-38 (109)
55 PF14362 DUF4407: Domain of un 25.4 6.6E+02 0.014 24.8 10.4 22 214-235 51-72 (301)
56 TIGR03038 PS_II_psbM photosyst 25.4 1.1E+02 0.0025 19.0 2.9 22 294-315 7-28 (33)
57 PF01528 Herpes_glycop: Herpes 24.3 7.9E+02 0.017 25.3 14.9 29 299-327 307-335 (374)
58 COG1230 CzcD Co/Zn/Cd efflux s 24.3 2.1E+02 0.0045 28.3 6.3 66 136-204 127-193 (296)
59 PF05151 PsbM: Photosystem II 24.2 1.8E+02 0.004 17.9 3.7 22 295-316 8-29 (31)
60 PF07856 Orai-1: Mediator of C 23.7 5.5E+02 0.012 23.2 10.0 58 207-267 66-123 (175)
61 PF06305 DUF1049: Protein of u 23.2 3E+02 0.0065 20.0 6.2 36 295-330 25-60 (68)
62 PF15383 TMEM237: Transmembran 22.9 3.5E+02 0.0076 26.1 7.4 46 221-266 153-198 (253)
63 CHL00080 psbM photosystem II p 20.8 1.4E+02 0.0031 18.6 2.7 23 294-316 7-29 (34)
64 PRK03557 zinc transporter ZitB 20.4 3E+02 0.0065 27.5 6.8 46 136-182 124-170 (312)
65 PF05297 Herpes_LMP1: Herpesvi 20.3 34 0.00074 32.9 0.0 20 301-320 172-191 (381)
No 1
>KOG4220|consensus
Probab=100.00 E-value=6.2e-53 Score=403.94 Aligned_cols=216 Identities=65% Similarity=1.082 Sum_probs=200.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHH
Q psy16378 90 LDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLF 169 (578)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~ 169 (578)
.+.......++.++++++.+.++++.++||++|++ .+.-+|+|++..|+|++
T Consensus 19 ~~~~~~~~~~q~v~i~~v~~~lsLVTv~GNlLVmi----------------------------SfKvnrqLqTVnNYfLf 70 (503)
T KOG4220|consen 19 ESPGTRYETWQVVFIVVVTGSLSLVTVVGNLLVMI----------------------------SFKVNRQLQTVNNYFLF 70 (503)
T ss_pred ccCCCCccceEEEeeehhhhHHHHHhhhccEEEEE----------------------------EEEecceeeeecceeeh
Confidence 33445566788889999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHH
Q psy16378 170 SLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM 249 (578)
Q Consensus 170 ~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~ 249 (578)
+||+|||+.|.+.+|++..+.+.++|.+|...|.+...+.++...+|++.|..|++|||+.|.+|+.|+...|.+|+..+
T Consensus 71 SLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~M 150 (503)
T KOG4220|consen 71 SLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLM 150 (503)
T ss_pred HHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy16378 250 IVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSN 329 (578)
Q Consensus 250 i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~~~ 329 (578)
|+++|++|+++..|.++.|.+..+......+.|..++.+ ..+..+...+..|-+|..+|+++|.+|++..+++.+....
T Consensus 151 I~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFls-np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~ 229 (503)
T KOG4220|consen 151 IGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLS-NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAK 229 (503)
T ss_pred HHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeec-CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999988888888899998876 5566677778889999999999999999999999998887
Q ss_pred hhhcC
Q psy16378 330 LQAAG 334 (578)
Q Consensus 330 ~~~~~ 334 (578)
.+...
T Consensus 230 lq~s~ 234 (503)
T KOG4220|consen 230 LQASL 234 (503)
T ss_pred ccccc
Confidence 77664
No 2
>KOG4219|consensus
Probab=100.00 E-value=2e-44 Score=347.30 Aligned_cols=200 Identities=23% Similarity=0.372 Sum_probs=175.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHH
Q psy16378 95 RFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVA 174 (578)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAva 174 (578)
.....+..+.+++|+++++++++||++|+| +++.+|++|+.+|+||+|||+|
T Consensus 29 ~lp~~~~~~wai~yg~l~~vAv~GN~iVlw----------------------------Iil~hrrMRtvtnyfL~NLAfA 80 (423)
T KOG4219|consen 29 VLPAWQQALWAIAYGLLVFVAVVGNLIVLW----------------------------IILAHRRMRTVTNYFLVNLAFA 80 (423)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCceEEE----------------------------EEeehhehhhhHHHHHHHHHHH
Confidence 345688999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHH
Q psy16378 175 DFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAW 254 (578)
Q Consensus 175 Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W 254 (578)
|++.++++.++...+.+...|.+|..+|++..|+..+...+|+++|++||+|||.||.||++.+ .+++..+++++++|
T Consensus 81 Dl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW 158 (423)
T KOG4219|consen 81 DLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIW 158 (423)
T ss_pred HHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999644 79999999999999
Q ss_pred HHHHHhhhhHHhhccccccccc--ccceeeeeccccc-----hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 255 GVSMILWPPWIFAWPYIEGERR--VPYYECYIQFIET-----NH-----YITFLTAIAAFYIPVSVMIFLYLRIYKETEK 322 (578)
Q Consensus 255 ~~s~~~~~p~~~~~~~~~~~~~--~~~~~C~~~~~~~-----~~-----~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~ 322 (578)
++|+++++|..+.......... .....|...+++. .. .|.+.+.++.|++|++++.++|.+|.+.+|+
T Consensus 159 ~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~ 238 (423)
T KOG4219|consen 159 ALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWG 238 (423)
T ss_pred HHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888665443221 2234565554432 11 1556677889999999999999999999998
Q ss_pred HH
Q psy16378 323 RK 324 (578)
Q Consensus 323 ~~ 324 (578)
++
T Consensus 239 ~~ 240 (423)
T KOG4219|consen 239 RR 240 (423)
T ss_pred cc
Confidence 75
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=8e-39 Score=322.85 Aligned_cols=192 Identities=14% Similarity=0.170 Sum_probs=147.4
Q ss_pred cchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeE--EecCCccchhHHHHHHHHHH
Q psy16378 97 TTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSF--KIDKTLQTISNYFLFSLAVA 174 (578)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i--~~~~~lr~~~~~~i~~LAva 174 (578)
....+++.+++|.+++++|++||++|++ ++ .+++++|+++|+|++|||+|
T Consensus 28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~----------------------------v~~~~~~~~~rt~tn~fi~NLAva 79 (338)
T PHA03234 28 LKKAQILESAINGIMLTLIIPMIIIVIC----------------------------TLIIYHKVAKHNATSFYLITLFAS 79 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHH----------------------------HHHHHhccccccHHHHHHHHHHHH
Confidence 3467888899999999999999999999 44 35566789999999999999
Q ss_pred HHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHH
Q psy16378 175 DFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAW 254 (578)
Q Consensus 175 Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W 254 (578)
|++++ +.+|+.+... .++|.+|+.+|++..++..+..++|++++++||+|||+||++|.+++. ++++....+++.|
T Consensus 80 DLL~~-l~lp~~~~~~-~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~W 155 (338)
T PHA03234 80 DFLHM-LCVFFLTLNR-EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILF 155 (338)
T ss_pred HHHHH-HHHHHHHHHH-hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHH
Confidence 99995 4667666543 456999999999999999999999999999999999999999987542 3344555667779
Q ss_pred HHHHHhhhhHHhhcccccccccccceeeeeccccchH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 255 GVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNH--YIT---FLTAIAAFYIPVSVMIFLYLRIYKETEK 322 (578)
Q Consensus 255 ~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~--~~~---~~~~~~~~~lPl~ii~~~y~~I~~~l~~ 322 (578)
+++++.++|.++........ .....|...++.... .+. ....+++|++|+++|++||.+|.+.+++
T Consensus 156 i~s~l~~~P~l~~~~~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~ 226 (338)
T PHA03234 156 LASAMCAIPAALFVKTEGKK--GNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHA 226 (338)
T ss_pred HHHHHHHhhHhHeeeeeecC--CCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987654332211 112368766543221 111 1223345789999999999999988855
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=9.4e-37 Score=307.93 Aligned_cols=190 Identities=21% Similarity=0.419 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHh
Q psy16378 99 TQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAI 178 (578)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~ 178 (578)
....+..+++.+++++|++||+++++ ++.+++++ ++.|+|++|||+||++.
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~----------------------------vi~~~~~~-~~~n~~i~nLAiaDll~ 76 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIA----------------------------VLIVKRFM-FVVDVYLFNIAMSDLML 76 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHH----------------------------HHHhcccc-chhhhhhHHHHHHHHHH
Confidence 34566788999999999999999988 77765554 57899999999999987
Q ss_pred hhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHH
Q psy16378 179 GAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258 (578)
Q Consensus 179 ~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~ 258 (578)
++.+|+.+.... ++|.+|+..|++..++..++..+|++++++||+|||++|++|++++. .+.+++..+++++|++++
T Consensus 77 -~~~lP~~i~~~~-~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~ 153 (323)
T PHA02834 77 -VFSFPFIIHNDL-NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSV 153 (323)
T ss_pred -HHHHHHHHHHHc-CCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHH
Confidence 778898776554 46999999999999999999999999999999999999999998654 455777788899999999
Q ss_pred HhhhhHHhhcccccccccccceeeeeccccch-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 259 ILWPPWIFAWPYIEGERRVPYYECYIQFIETN-HY---ITFLTAIAAFYIPVSVMIFLYLRIYKETEKR 323 (578)
Q Consensus 259 ~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~-~~---~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~ 323 (578)
++++|+++.+..... .....|........ .. +.....++.|++|+++|++||.+|++.+|++
T Consensus 154 l~~~P~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~ 219 (323)
T PHA02834 154 ILSMPAMVLYYVDNT---DNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNC 219 (323)
T ss_pred HHHhhHHHHHHhccC---CCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998776433211 12236764332221 11 2233446789999999999999999988653
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=3e-36 Score=310.67 Aligned_cols=195 Identities=15% Similarity=0.223 Sum_probs=146.5
Q ss_pred chHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEe-cCCc-cchhHHHHHHHHHHH
Q psy16378 98 TTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKI-DKTL-QTISNYFLFSLAVAD 175 (578)
Q Consensus 98 ~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~-~~~l-r~~~~~~i~~LAvaD 175 (578)
...+.+..+++.+++++|++||++|++ ++.+ +|.+ ++.+++|++|||++|
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~----------------------------~~~~~~r~~~~~~~~~~I~NLAvsD 80 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLV----------------------------TQLLANRVHGFSTPTLYMTNLYLAN 80 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHhhhcccCCccHHHHHHHHHHH
Confidence 456677889999999999999999988 6543 3322 456689999999999
Q ss_pred HHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHH
Q psy16378 176 FAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWG 255 (578)
Q Consensus 176 ll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~ 255 (578)
++. ++.+|+.+... ...|..|+..|++..++..++..+|++++++||+|||++|++|.+++ ..+++++..+++++|+
T Consensus 81 Ll~-l~~lP~~i~~~-~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~-~~~~~~a~~ii~~iWi 157 (409)
T PHA03235 81 LLT-VFVLPFIMLSN-QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRAR-SSAYRSTYKILGLTWF 157 (409)
T ss_pred HHH-HHHHHHHHHhc-CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhcc-CcccchhhhhHHHHHH
Confidence 987 67888876532 12233457899999999999999999999999999999999998644 4568889999999999
Q ss_pred HHHHhhhhHHhhcccc--cc--cccccceeeeeccccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 256 VSMILWPPWIFAWPYI--EG--ERRVPYYECYIQFIETN-----HYITFLTAIAAFYIPVSVMIFLYLRIYKETEKR 323 (578)
Q Consensus 256 ~s~~~~~p~~~~~~~~--~~--~~~~~~~~C~~~~~~~~-----~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~ 323 (578)
+++++++|+.+..... .. ........|...+.... ..|.+..+++.|++|+++|++||.+|++.++++
T Consensus 158 ~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~ 234 (409)
T PHA03235 158 ASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRA 234 (409)
T ss_pred HHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999976542211 11 11122346865443321 124445556779999999999999999998765
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=305.63 Aligned_cols=193 Identities=21% Similarity=0.483 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhh
Q psy16378 100 QVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIG 179 (578)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~ 179 (578)
...+..++|.+++++|++||+++++ ++. +|++|+++|++++|||++|+++
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~----------------------------il~-~k~lrt~t~i~llnLAisDLl~- 146 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIM----------------------------ILF-CKKIKTITDIYIFNLAISDLIF- 146 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH-hccCCCHhHHHHHHHHHHHHHH-
Confidence 4556667777777777777777777 654 4788999999999999999988
Q ss_pred hhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHH
Q psy16378 180 AISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMI 259 (578)
Q Consensus 180 ~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~ 259 (578)
++.+|+.+... .++|.+|+..|++..++...+.++|++.+++|++|||+||+||.++++..+++++...++++|+++++
T Consensus 147 ~l~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l 225 (417)
T PHA02638 147 VIDFPFIIYNE-FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLI 225 (417)
T ss_pred HHHHHHHHHHH-hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHH
Confidence 67889887765 46799999999999999999999999999999999999999999987777888888889999999999
Q ss_pred hhhhHHhhccccc-------ccccccceeeeeccccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 260 LWPPWIFAWPYIE-------GERRVPYYECYIQFIETN-------HYITFLTAIAAFYIPVSVMIFLYLRIYKETEKR 323 (578)
Q Consensus 260 ~~~p~~~~~~~~~-------~~~~~~~~~C~~~~~~~~-------~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~ 323 (578)
+++|+++..+... .........|...++... ..+.+...++++++|++++++||.+|++++++.
T Consensus 226 ~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~ 303 (417)
T PHA02638 226 ITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQL 303 (417)
T ss_pred HHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988654321 111111346765443211 123334456778999999999999999998653
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=7.3e-34 Score=289.60 Aligned_cols=193 Identities=22% Similarity=0.427 Sum_probs=159.3
Q ss_pred chHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHH
Q psy16378 98 TTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFA 177 (578)
Q Consensus 98 ~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll 177 (578)
.....+..+++.+++++|++||+++++ ++.++ ++|++.|+++.|||++|++
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~----------------------------~~~~~-~~~~~~~~ll~~laisDll 87 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIY----------------------------VLTKT-KIKTPMDIYLLNLAVSDLL 87 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEe----------------------------eehhc-cccCchHHHHHHHHHHHHH
Confidence 446667788999999999999999999 88777 8899999999999999998
Q ss_pred hhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHH
Q psy16378 178 IGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS 257 (578)
Q Consensus 178 ~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s 257 (578)
.+ +..|..+.....+.|.+++..|++..++......+|++++++||+|||++|++|++|+...+.+++..+++++|+++
T Consensus 88 ~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~ 166 (335)
T PHA03087 88 FV-MTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIIS 166 (335)
T ss_pred HH-HhHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHH
Confidence 74 46777776666778999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHhhhhHHhhcccccccccccceeeeeccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 258 MILWPPWIFAWPYIEGERRVPYYECYIQFIETNH----YITFLTAIAAFYIPVSVMIFLYLRIYKETEKR 323 (578)
Q Consensus 258 ~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~----~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~ 323 (578)
++.++|+++.+..... .....|...+..... .+.+...++.+++|+++++++|.+|++.++++
T Consensus 167 ~~~~~p~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~ 233 (335)
T PHA03087 167 IIETTPILFVYTTKKD---HETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGI 233 (335)
T ss_pred HHHhccHhheeeeecc---CCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998776544322 223467665542221 12223445678999999999999998877654
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.97 E-value=6.2e-31 Score=256.78 Aligned_cols=180 Identities=29% Similarity=0.545 Sum_probs=158.5
Q ss_pred hhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q psy16378 146 GNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISF 225 (578)
Q Consensus 146 gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iai 225 (578)
||+++++++.++|++|++.++|++|||++|++.++...|..+.....+.|..++..|++..++..++...|.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999989999999999999999999999999999998888888777889999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccc-hHHHHHHHHHHHHHH
Q psy16378 226 DRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIET-NHYITFLTAIAAFYI 304 (578)
Q Consensus 226 dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~l 304 (578)
|||++|++|++|++..+++++..+++++|++++++++|+.+.......... ....|....... ...+.....++.+++
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDG-SQSFCFIDFSSSSSQIYFIYFFIVFFIL 159 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTC-CCEEEEESCSSSHHHHHHHHHHHHHTHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999887544332221 146899887665 345666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy16378 305 PVSVMIFLYLRIYKETEKRKKE 326 (578)
Q Consensus 305 Pl~ii~~~y~~I~~~l~~~~~~ 326 (578)
|+++++++|.+|++.+|++.++
T Consensus 160 p~~~~~~~~~~i~~~~~~~~~~ 181 (257)
T PF00001_consen 160 PLIIILICYIRILRKLRRQRKR 181 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceeeeeeecccccccccccccc
Confidence 9999999999999999998874
No 9
>KOG2087|consensus
Probab=99.92 E-value=4.5e-25 Score=211.60 Aligned_cols=187 Identities=18% Similarity=0.234 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcC-------ccccccccchhh
Q psy16378 133 QTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILG-------YWPLGPMVCDTW 205 (578)
Q Consensus 133 ~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~-------~~~~~~~~C~~~ 205 (578)
++..+++..++++||++|+......+...++..+++.|||+||++.|+-...+..++.... .|-.....|++.
T Consensus 28 Ri~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~a 107 (363)
T KOG2087|consen 28 RISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVA 107 (363)
T ss_pred eehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchH
Confidence 3444444444444444444488888888888999999999999999876655555544332 122356799999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeec
Q psy16378 206 LALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQ 285 (578)
Q Consensus 206 ~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~ 285 (578)
+|+..++.-.|++.++.+++||++.|++|++-.+....|....+++..|+.++++++.|+++.+.+. ....|.+.
T Consensus 108 GflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~-----~~~vClPL 182 (363)
T KOG2087|consen 108 GFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYG-----ASSVCLPL 182 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCc-----ccceeeec
Confidence 9999999999999999999999999999999777777777999999999999999999988854443 33578775
Q ss_pred cccc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 286 FIET-NHY-ITFLTAIAAFYIPVSVMIFLYLRIYKETEKRK 324 (578)
Q Consensus 286 ~~~~-~~~-~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~ 324 (578)
..+. ... |....++....+.+++|.++|++|+..+++..
T Consensus 183 ~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~ 223 (363)
T KOG2087|consen 183 HIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGD 223 (363)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCC
Confidence 4433 222 45556666788999999999999999887643
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.81 E-value=7.8e-20 Score=177.71 Aligned_cols=174 Identities=15% Similarity=0.190 Sum_probs=121.5
Q ss_pred HHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHH
Q psy16378 142 VTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLL 221 (578)
Q Consensus 142 ~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~ 221 (578)
+|++||+.++.++.++|++|++.+++++.+|++|++.++-.+|..+... +........|-...+...++...+...+.
T Consensus 3 ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l 80 (257)
T PF10320_consen 3 IGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIML 80 (257)
T ss_pred EEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666699999999999999999999999999777777665332 22345667899999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHHHHHH
Q psy16378 222 IISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAA 301 (578)
Q Consensus 222 ~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 301 (578)
+|++||++||+.|.+|+...+.+..........+.+....+. ++...++ +....|.+...-....+.++... .
T Consensus 81 ~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~-----~~~~~~~-~~~~~C~pp~a~~~~~~~~~~~~-~ 153 (257)
T PF10320_consen 81 AIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVI-----GFLYRDD-ETIVICNPPLAFHGTASQIWSYS-N 153 (257)
T ss_pred HHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhh-----eeEecCC-cccccCCCccccCccHHHHHHHH-H
Confidence 999999999999999999988886655555555555554322 2221111 23458887654433333332222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy16378 302 FYIPVSVMIFLYLRIYKETEKRKK 325 (578)
Q Consensus 302 ~~lPl~ii~~~y~~I~~~l~~~~~ 325 (578)
. +.-+++++.|...+..++++.+
T Consensus 154 ~-~inv~tvivY~i~~~~~~~k~~ 176 (257)
T PF10320_consen 154 I-IINVITVIVYIITIIIFKRKSR 176 (257)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcc
Confidence 2 2234556777777777766543
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.73 E-value=2.8e-17 Score=166.22 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=135.0
Q ss_pred HHHHHHHHhhhheeeeEEecCCccc-hhHHHHHHHHHHHHHhhhhchhHHHHHHHcC---c------cccccccchhhhH
Q psy16378 138 YFLIVTVLGNILVMVSFKIDKTLQT-ISNYFLFSLAVADFAIGAISMPLFTVYTILG---Y------WPLGPMVCDTWLA 207 (578)
Q Consensus 138 ~i~~~gi~gN~lvi~~i~~~~~lr~-~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~---~------~~~~~~~C~~~~~ 207 (578)
+++++|+++|++.++++. +|.||+ +.|.+++.+|++|++..+..++..+...... + ..+......+..+
T Consensus 5 ~~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 356789999999995554 567775 7899999999999999887777766544432 1 1111123344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--CccccchhhhHHHHHHHHHHHHhhhhHHhhccccccc-ccccceeeee
Q psy16378 208 LDYLASNASVLNLLIISFDRYFSVTRPLTY--RAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGE-RRVPYYECYI 284 (578)
Q Consensus 208 ~~~~~~~~S~~~l~~iaidRy~aI~~P~~~--~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~-~~~~~~~C~~ 284 (578)
+...+..+|.|..++||+.|+++|.+|+.. +...+++.+..++.++++++.++.++.++.+...+.. ...+...|..
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 788889999999999999999999999864 3456788888899999999999999988776655432 1122345751
Q ss_pred cc-----cc-------c----h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy16378 285 QF-----IE-------T----N----HYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFS 328 (578)
Q Consensus 285 ~~-----~~-------~----~----~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~~ 328 (578)
.. +. . + ..+.+...++.-++|.++..++.+.+.+.+|+.+++++
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~ 227 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRK 227 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhh
Confidence 10 00 0 0 11222233444789999999999999999999887643
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.70 E-value=7.1e-17 Score=159.29 Aligned_cols=187 Identities=17% Similarity=0.137 Sum_probs=132.1
Q ss_pred HHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccch-hhhHHHHHHHHHHH
Q psy16378 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCD-TWLALDYLASNASV 217 (578)
Q Consensus 139 i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~S~ 217 (578)
++++|++.|.+++..+.+.+++|++.+++-.+.|++|++.++..+.......+.+.-........ +.+++...+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999997755544444444443333333333 44788888889999
Q ss_pred HHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHH
Q psy16378 218 LNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLT 297 (578)
Q Consensus 218 ~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 297 (578)
++.++||++|++||..|.+|+++.+.+.+..+++++|++++....+..+..++.-. ...+...-....+..-..+....
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~-y~~~~~~~~~~~~~~C~~~~~~~ 161 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFY-YDPETWSWSYPTDPPCGNYSWYF 161 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcce-eccceeeeecCCCCccchhhhHH
Confidence 99999999999999999999999999999999999999999777665553232211 11111111111111122223323
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16378 298 AIAAFYIPVSVMIFLYLRIYKETEKRKKE 326 (578)
Q Consensus 298 ~~~~~~lPl~ii~~~y~~I~~~l~~~~~~ 326 (578)
......+-.+++.+++..++.++++.+++
T Consensus 162 ~~~~~~~~~~~~~~lni~t~ikl~~~~~~ 190 (274)
T PF10328_consen 162 DFYKNFILVIISNILNIITFIKLRKFRKK 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 23334444677888999999999888764
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.44 E-value=2.8e-12 Score=127.50 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=129.7
Q ss_pred chhHHHHHHHHHHHHHhhhheeeeEEe---cCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhh
Q psy16378 130 KTLQTISNYFLIVTVLGNILVMVSFKI---DKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWL 206 (578)
Q Consensus 130 ~~l~~i~~~i~~~gi~gN~lvi~~i~~---~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 206 (578)
..+.++..+..++|++||.+++++-.. +++.-+|.+..+.+||++.++...+.........+.......+..+++..
T Consensus 7 ~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (303)
T PF05296_consen 7 IIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIID 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHH
Confidence 344566667778888888887767654 33334689999999999999886665555555555555556677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccc----hhhhHHHHHHHHHHHHhhhhHHhhcccccc-c--ccccc
Q psy16378 207 ALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTT----KRAACMIVTAWGVSMILWPPWIFAWPYIEG-E--RRVPY 279 (578)
Q Consensus 207 ~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~----~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~-~--~~~~~ 279 (578)
++..+....|.|..+++++--++.|+...+.--..=+ +-+..++.+.++++++..++....+..... . .....
T Consensus 87 ~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N 166 (303)
T PF05296_consen 87 FLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRN 166 (303)
T ss_pred HHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCc
Confidence 9999999999999999999999999875431111112 223345667777777333333233222111 0 11111
Q ss_pred eeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy16378 280 YECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFS 328 (578)
Q Consensus 280 ~~C~~~~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~~ 328 (578)
.............+......+..++|+++++++...+...++||.|+++
T Consensus 167 ~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~ 215 (303)
T PF05296_consen 167 STSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQ 215 (303)
T ss_pred ceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111222233344444578899999999999999999999999875
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.39 E-value=1e-12 Score=129.64 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=117.6
Q ss_pred HHHHHhhhheeeeEEecCC----ccchhHHHHHHHHHHHHHhhhhchhHHHHHHH---cC-ccccccccchhhhHHHHHH
Q psy16378 141 IVTVLGNILVMVSFKIDKT----LQTISNYFLFSLAVADFAIGAISMPLFTVYTI---LG-YWPLGPMVCDTWLALDYLA 212 (578)
Q Consensus 141 ~~gi~gN~lvi~~i~~~~~----lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~---~~-~~~~~~~~C~~~~~~~~~~ 212 (578)
++.++--++++.++.+.|+ .+++.+.++.+-+++|++..+........... .+ ....++..-++........
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~ 85 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYF 85 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3445555555555555433 46888999999999999986554443332221 11 0112333456666677778
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-CcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchH
Q psy16378 213 SNASVLNLLIISFDRYFSVTRPL-TYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNH 291 (578)
Q Consensus 213 ~~~S~~~l~~iaidRy~aI~~P~-~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 291 (578)
..+-....+.+|++||.||++|. ++.+..++.+...++++-|+.++++++|.+...+..-.. ... ..-..+. +...
T Consensus 86 ~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~-~~~-~~~~~d~-~~~~ 162 (283)
T PF10323_consen 86 LYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDN-EEN-MSLFVDP-EFIQ 162 (283)
T ss_pred HHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeec-ccc-eeeecCH-HHHH
Confidence 88889999999999999999999 888888999999999999999999999855543222111 111 1111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16378 292 YITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKK 325 (578)
Q Consensus 292 ~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~ 325 (578)
.. .........+-++..+++|+.++..+||+.+
T Consensus 163 ~~-~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 163 RN-FLIAFIFVSVTCVICIVCYGIIFIFIRKRNK 195 (283)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 2223344556677889999999999998764
No 15
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.22 E-value=1.1e-10 Score=115.54 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=114.5
Q ss_pred chHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHH
Q psy16378 98 TTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFA 177 (578)
Q Consensus 98 ~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll 177 (578)
...+.++|..+.+.+++-.+-.+..+. ++.+++..|.+.+-++.-||+.|++
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~----------------------------~i~~~~~~k~~~ykiM~~L~i~Di~ 80 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLI----------------------------AIFKKKLFKMSCYKIMFFLAIFDII 80 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHH----------------------------HHHHhccccCcHHHHHHHHHHHHHH
Confidence 456667777777777776666666666 7888777789999999999999998
Q ss_pred hhhhchhHHHHHHHcCccccccccchh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHH
Q psy16378 178 IGAISMPLFTVYTILGYWPLGPMVCDT------WLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIV 251 (578)
Q Consensus 178 ~~~~~~p~~~~~~~~~~~~~~~~~C~~------~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~ 251 (578)
.....-...-...+ .|...|.. .+.+...+...+......+|++|..-+..|......+..++....+.
T Consensus 81 ~l~~~si~tG~l~i-----~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~ 155 (313)
T PF10321_consen 81 QLFINSIITGILAI-----FGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLF 155 (313)
T ss_pred HHHhhhhhhhHHHh-----cCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeeh
Confidence 85433222222222 24455554 34455667788889999999999999999887666667777665544
Q ss_pred HHHHHHHHh--hhhHH-hhcccccccccccceeeee-cc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 252 TAWGVSMIL--WPPWI-FAWPYIEGERRVPYYECYI-QF----IETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKR 323 (578)
Q Consensus 252 ~~W~~s~~~--~~p~~-~~~~~~~~~~~~~~~~C~~-~~----~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~ 323 (578)
+..++++.. ..++. +.... .++. |+ ......|.-..-.+.-++-.+++.++|+.+...++++
T Consensus 156 ~~~iY~~y~~~fT~pv~Fns~~----------~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k 225 (313)
T PF10321_consen 156 LPIIYGFYFSFFTPPVLFNSEY----------MSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKK 225 (313)
T ss_pred hHHHHHHHHHHHcCcccCCCCc----------ceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333332 22333 22111 1111 11 0111222222222233444677889999999999887
Q ss_pred Hhh
Q psy16378 324 KKE 326 (578)
Q Consensus 324 ~~~ 326 (578)
.+.
T Consensus 226 ~~~ 228 (313)
T PF10321_consen 226 SKY 228 (313)
T ss_pred ccc
Confidence 653
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.18 E-value=7.2e-10 Score=109.00 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=110.2
Q ss_pred chhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHH
Q psy16378 130 KTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALD 209 (578)
Q Consensus 130 ~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 209 (578)
..+.++..+.++++++|-+++++.+.+.|++|++.+-++.-++++|++..+..+... ..+.-..++..|.+++++.
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafli 82 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLI 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHH
Confidence 345666777788889999999989999999999999999999999998765443322 1222344678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccc
Q psy16378 210 YLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFI 287 (578)
Q Consensus 210 ~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~ 287 (578)
.++..++.+-.++||++=|+.+++... -.++.-....+++|.++++.++.++... .++ .....|+....
T Consensus 83 q~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~-~~g----~~G~WCWI~~~ 151 (303)
T PF05462_consen 83 QFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGN-DYG----PAGNWCWIKPE 151 (303)
T ss_pred HHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCC----CCCCceeecCC
Confidence 999999999999999999999987532 1345556678899999999887766542 222 22238988653
No 17
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.97 E-value=1.8e-08 Score=93.47 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=105.6
Q ss_pred CCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy16378 158 KTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTY 237 (578)
Q Consensus 158 ~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~ 237 (578)
++++.-.+.+++||.++|++.++..+...+.....+.-..+...|.+.+++..+....+-+...+||+.-|+.|.+|-..
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 44556667799999999999988776655555555544557889999999999999999999999999999999999211
Q ss_pred Cc---------cccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHHHHHHHHHHHHH
Q psy16378 238 RA---------KRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSV 308 (578)
Q Consensus 238 ~~---------~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~lPl~i 308 (578)
++ ...+..+..+..+.|++...++. .. ...+.+......|+....... +.+...-+--.+-.++
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~---i~--~~~~~Y~~~g~WCWi~~~~~~--~Rl~l~y~~~~~~~~~ 182 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAF---IG--LGGPGYGPAGAWCWIPSRYEW--YRLWLHYIWRFIIIFA 182 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHHHH---hc--cccCcccccCcEEEECCCcHH--HHHHHHHHHHHHHHHH
Confidence 10 01112222333344444444332 22 111112233458988764332 2222222233344778
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy16378 309 MIFLYLRIYKETEKRKKE 326 (578)
Q Consensus 309 i~~~y~~I~~~l~~~~~~ 326 (578)
+++.|..|+..+||+.|+
T Consensus 183 ~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 183 IIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 899999999999998764
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.61 E-value=8.7e-07 Score=88.20 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhhheeeeEEec-CCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCc-----------ccccccc
Q psy16378 134 TISNYFLIVTVLGNILVMVSFKID-KTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGY-----------WPLGPMV 201 (578)
Q Consensus 134 ~i~~~i~~~gi~gN~lvi~~i~~~-~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~-----------~~~~~~~ 201 (578)
++..+.+++|++.|++.++.+.++ ++.-+.-.+++.|-|+.|++.++...... .-....+ -.+|...
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence 456778888999998888777654 33345668899999999998865443322 2111111 2357789
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhh
Q psy16378 202 CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFA 267 (578)
Q Consensus 202 C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 267 (578)
|.....+...+...+.+++.+--..||..+.++.. ++++....+++.+..++...+..++.
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~ 142 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFS 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998642 66777778888888888776554443
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.40 E-value=4.4e-07 Score=87.01 Aligned_cols=167 Identities=10% Similarity=0.066 Sum_probs=106.4
Q ss_pred CccchhHHHHHHHHHHHHHhhhh-chhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-
Q psy16378 159 TLQTISNYFLFSLAVADFAIGAI-SMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLT- 236 (578)
Q Consensus 159 ~lr~~~~~~i~~LAvaDll~~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~- 236 (578)
+..+|.+..+.+||+|++++.+. .+|..... .+.-.+++..||+..|+.-++-..|+.+.+++++-.-+.|.-.-.
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~--~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~ 83 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAF--FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSR 83 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHH--hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCch
Confidence 34689999999999999988543 44533222 222246899999999999999999999999999966666543221
Q ss_pred c--CccccchhhhHHHHHHHHHHHHhhhhHHhhcc----cccccccccceeeeeccccchH--HHHHHHHHHHHHHHHHH
Q psy16378 237 Y--RAKRTTKRAACMIVTAWGVSMILWPPWIFAWP----YIEGERRVPYYECYIQFIETNH--YITFLTAIAAFYIPVSV 308 (578)
Q Consensus 237 ~--~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~----~~~~~~~~~~~~C~~~~~~~~~--~~~~~~~~~~~~lPl~i 308 (578)
. -+...++.....+.+.|++-.++.....+... ...........+|.....+... .+.. ...+.-++.+.+
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~-~~~~~D~~fvgL 162 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFAT-LLSFRDVLFVGL 162 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhh-HHHhhHHHHHHH
Confidence 1 11224455666788889998887654322211 1111111223578765433222 1222 222333566778
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy16378 309 MIFLYLRIYKETEKRKKEFS 328 (578)
Q Consensus 309 i~~~y~~I~~~l~~~~~~~~ 328 (578)
|++.-+.+...+.||+++.+
T Consensus 163 M~~aSgyMV~~L~RH~q~Vq 182 (265)
T PF03402_consen 163 MIWASGYMVFLLYRHHQQVQ 182 (265)
T ss_pred HHhhhhhheeeeeecccccc
Confidence 88999999999999987653
No 20
>KOG4193|consensus
Probab=98.22 E-value=6.1e-06 Score=88.53 Aligned_cols=168 Identities=17% Similarity=0.252 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccc--cchhhhHHHHHHHH
Q psy16378 137 NYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM--VCDTWLALDYLASN 214 (578)
Q Consensus 137 ~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~--~C~~~~~~~~~~~~ 214 (578)
.+-+++.++.=++.+++++.-|++++..+....+|+++=++. -..++.+.|..+.. .|+..+++..++..
T Consensus 327 ~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~--------~l~fL~~~~~~~~~~~~C~~~a~llhff~L 398 (610)
T KOG4193|consen 327 TVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLA--------ELLFLLGIDRTSTSVVLCIAAAILLHFFFL 398 (610)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--------HHHHhcccccccCcccccHHHHHHHHHHHH
Confidence 333333344434444444444555555577778888772211 11223344443333 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHH
Q psy16378 215 ASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYIT 294 (578)
Q Consensus 215 ~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 294 (578)
+..+-+.++++.=|+.++.-+. ....++......+.|...+++...........+. .+.....|+.+......+.
T Consensus 399 aaF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-~~~~~~~CWl~~~~~~~~~- 473 (610)
T KOG4193|consen 399 AAFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-QYGTPRVCWLDTQNGFIWS- 473 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-ccccCCceEEecCCceEEE-
Confidence 9999999999999996665432 3344555555468999998876554433222211 1122234988765432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 295 FLTAIAAFYIPVSVMIFLYLRIYKETEKRK 324 (578)
Q Consensus 295 ~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~ 324 (578)
|+.|+.+++++++.++..+-++-
T Consensus 474 -------F~GPv~~ii~~Ni~~Fv~t~~~l 496 (610)
T KOG4193|consen 474 -------FLGPVTLIILVNIVMFVVTLKKL 496 (610)
T ss_pred -------EehHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877776654443
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.22 E-value=8.1e-05 Score=75.21 Aligned_cols=150 Identities=7% Similarity=-0.027 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHH---HHHc--C--ccccccccchhhh
Q psy16378 134 TISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTV---YTIL--G--YWPLGPMVCDTWL 206 (578)
Q Consensus 134 ~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~---~~~~--~--~~~~~~~~C~~~~ 206 (578)
.+..+++++|++.++..+..+..++..|....+++....++.++.++.-+..... .+.. + +...+...|-+..
T Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR 100 (324)
T PF10292_consen 21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILR 100 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHH
Confidence 3445555666666666655777777778888888888888888776543333322 2222 1 2334667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeecc
Q psy16378 207 ALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQF 286 (578)
Q Consensus 207 ~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 286 (578)
....++...+.++..++++||++|-++..+|.+. ++.-...+..+.|++++......+..... .......|....
T Consensus 101 ~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~~~~~----~~~~~~yC~~~~ 175 (324)
T PF10292_consen 101 IPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVYSDEDF----PNERMYYCQASS 175 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHhhhhc----cCccceeeEEec
Confidence 9999999999999999999999999999888754 33333444555566655543322221111 123345788765
Q ss_pred cc
Q psy16378 287 IE 288 (578)
Q Consensus 287 ~~ 288 (578)
.+
T Consensus 176 ~~ 177 (324)
T PF10292_consen 176 SS 177 (324)
T ss_pred CC
Confidence 44
No 22
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.03 E-value=0.00039 Score=69.37 Aligned_cols=194 Identities=16% Similarity=0.190 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeEEe-cCCccchhHHHH---HHHHHHHHHhhhhchhHHHHHHHcCccccc------cc
Q psy16378 131 TLQTISNYFLIVTVLGNILVMVSFKI-DKTLQTISNYFL---FSLAVADFAIGAISMPLFTVYTILGYWPLG------PM 200 (578)
Q Consensus 131 ~l~~i~~~i~~~gi~gN~lvi~~i~~-~~~lr~~~~~~i---~~LAvaDll~~~~~~p~~~~~~~~~~~~~~------~~ 200 (578)
++...+-++++++++.|.+.++.+.. .+++.+-.++++ +...++|+-.+++..|..+.-...|. ..| +.
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G~l~~~f~i 88 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEeehhhcCCC
Confidence 34444555555555555555545544 455555444433 24589999999999888877665552 112 12
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccc----c
Q psy16378 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGER----R 276 (578)
Q Consensus 201 ~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~----~ 276 (578)
.+.....+..+.....+-.++..-+-|+-+|.+..+.. ...+........+..+..+...+..... +..+.+. .
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~-~~s~eeq~~yI~ 166 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIFICFYFS-GMSREEQMEYIR 166 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHHHHHHhc-CCCHHHHHHHHH
Confidence 33344455566666667777777889999999987533 3444444444555555555444332221 1110000 0
Q ss_pred ccceeeeeccc--------cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16378 277 VPYYECYIQFI--------ETNH--YITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEF 327 (578)
Q Consensus 277 ~~~~~C~~~~~--------~~~~--~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~ 327 (578)
..+..|..... +.+. .......+++.++-.+++.+++..+++.+++.++++
T Consensus 167 ~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i 227 (303)
T PF10327_consen 167 ENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI 227 (303)
T ss_pred hhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01111211110 1112 222333444556677888889999999998887654
No 23
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.96 E-value=2.1e-06 Score=86.38 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhheeeeEEecCCc-cchhHHHHHHHHHHHHHhhhhchhHHHHHHHcC----------ccccccccc
Q psy16378 134 TISNYFLIVTVLGNILVMVSFKIDKTL-QTISNYFLFSLAVADFAIGAISMPLFTVYTILG----------YWPLGPMVC 202 (578)
Q Consensus 134 ~i~~~i~~~gi~gN~lvi~~i~~~~~l-r~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~----------~~~~~~~~C 202 (578)
++..+..+++++.|.+.++.+.++.+. -..-.+++...|+.|++++++-....-.....+ .+..+....
T Consensus 3 ~~~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (307)
T PF10326_consen 3 IIQYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIG 82 (307)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchhe
Confidence 456677888999999998777654332 333456777889999988776554333222221 233344556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHH
Q psy16378 203 DTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMI 259 (578)
Q Consensus 203 ~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~ 259 (578)
++...+...+...+...++.-=+.||.++++|.+. +....++....++..-+.++.
T Consensus 83 ~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f~~~~~~~w~~~~~~~~~~ 138 (307)
T PF10326_consen 83 QILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYFSGWRFIIWFLIPIIFGII 138 (307)
T ss_pred eehhhhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccccccceeeeehhhhhhccc
Confidence 66667777777888888888899999999999864 344445544443333333333
No 24
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.94 E-value=3.3e-06 Score=81.75 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHH
Q psy16378 131 TLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDY 210 (578)
Q Consensus 131 ~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~ 210 (578)
.+.++..+-+.+++++-+++++.+...|++|+..+....||++++++..+..+.. ......+.....+..|...+++.+
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~h 80 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLH 80 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhH
Confidence 3455566666666666666666666668888888888999999999876544322 111111111112235999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhh
Q psy16378 211 LASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFA 267 (578)
Q Consensus 211 ~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 267 (578)
.+..++..-+.+.+++=|..++.+.. ..+++.....++.|.+++++.......
T Consensus 81 y~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 81 YFFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeee
Confidence 99999999999999999999988732 124556667788899999876665444
No 25
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=97.82 E-value=0.0012 Score=66.27 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHHHHhhhheeeeEEec-CCccchhHHHHHH----HHHHHHHhhhhchhHHHHHHHcCc----cccccc
Q psy16378 130 KTLQTISNYFLIVTVLGNILVMVSFKID-KTLQTISNYFLFS----LAVADFAIGAISMPLFTVYTILGY----WPLGPM 200 (578)
Q Consensus 130 ~~l~~i~~~i~~~gi~gN~lvi~~i~~~-~~lr~~~~~~i~~----LAvaDll~~~~~~p~~~~~~~~~~----~~~~~~ 200 (578)
..+....-++.+++++-|++.++.+.++ ++.-+..-+.+++ ..+.|+..+.+..|....-...+. ...-..
T Consensus 4 ~~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv 83 (302)
T PF10318_consen 4 DFYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGV 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhccc
Confidence 3456677788888888888888776665 2222333333333 468899998888886554443331 111134
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcc
Q psy16378 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWP 269 (578)
Q Consensus 201 ~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~ 269 (578)
-..+..++..........++..+=-.||.++....+ +...++......++.++++....+|.++..+
T Consensus 84 ~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~p 150 (302)
T PF10318_consen 84 PTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIP 150 (302)
T ss_pred ChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 467777888888888888888999999999997643 1222233344455566677777777766544
No 26
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.74 E-value=0.00014 Score=71.89 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhhhheeeeEEecCC--c-cchhHHHHHHHHHHHHHhhhhchhH-HHHHHHcC------c-cccccccchh
Q psy16378 136 SNYFLIVTVLGNILVMVSFKIDKT--L-QTISNYFLFSLAVADFAIGAISMPL-FTVYTILG------Y-WPLGPMVCDT 204 (578)
Q Consensus 136 ~~~i~~~gi~gN~lvi~~i~~~~~--l-r~~~~~~i~~LAvaDll~~~~~~p~-~~~~~~~~------~-~~~~~~~C~~ 204 (578)
..+.++.+++.+.++++++.++++ . +++.+.+..-=++.+++.-+...+. .+...... . .........+
T Consensus 4 ~~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~ 83 (275)
T PF02118_consen 4 QLIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNI 83 (275)
T ss_pred ehhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHH
Confidence 456778888888888888887776 4 6676776666677776653333222 11111000 0 1123456677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeee
Q psy16378 205 WLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYI 284 (578)
Q Consensus 205 ~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~ 284 (578)
..++...+..+.......|+++|+-+|..|.++.+..++.. ..+++++.++++....+.+.........+.... .-..
T Consensus 84 ~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (275)
T PF02118_consen 84 FYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFS-YSYN 161 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHccccEEEEECCceE-EEEE
Confidence 77788888899999999999999999999999887666443 345555555555544333332111111111111 1111
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16378 285 QFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKK 325 (578)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~ 325 (578)
+. .............+++-+++.++++....+++++.++
T Consensus 162 ~~--~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~ 200 (275)
T PF02118_consen 162 DT--VSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLSK 200 (275)
T ss_pred ec--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11 1111111222333444455666777777777766553
No 27
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=97.74 E-value=0.00015 Score=71.30 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHcCcc-----------ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16378 165 NYFLFSLAVADFAIGAISMPLFTVYTILGYW-----------PLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTR 233 (578)
Q Consensus 165 ~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~-----------~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~ 233 (578)
.-.+..||+||++.++-.+.-..++...... ..+..+|........++..++-+-+.+-|+|=|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 4688999999998854333333333322211 11346888888777788899999999999999998865
Q ss_pred CCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 234 PLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLY 313 (578)
Q Consensus 234 P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~lPl~ii~~~y 313 (578)
-- .+.+....-.++|.++.+++.--..... + ++...|....... +-..+ .-.+|++++++.+
T Consensus 148 ~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly-~-----Ps~~~Ce~~l~~a-----lphYv-ttY~PlllVlvaN 209 (405)
T PF02101_consen 148 SA------GRSTIWLYHMMAWGLPALLCAEGLAMLY-Y-----PSISRCESGLEHA-----LPHYV-TTYIPLLLVLVAN 209 (405)
T ss_pred cC------CCcchhHHHHHHHHHHHHHHHhccceee-c-----CCHHhhhhhhhhc-----chhHH-HHHHHHHHHHHhc
Confidence 22 1233345667789999887654333211 1 1122464332211 11112 2235666666655
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCccccccccccccCCCCCccceeeeEeE
Q psy16378 314 LRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCI 363 (578)
Q Consensus 314 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
=.+++..-+.....-+...+.-.+++++.....+.|..++..+|.+||.+
T Consensus 210 PiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlp 259 (405)
T PF02101_consen 210 PILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLP 259 (405)
T ss_pred cHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555544433332222222233333444445555666666666666644
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.53 E-value=0.0011 Score=64.43 Aligned_cols=120 Identities=19% Similarity=0.137 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcC--cccc-ccccchhhhHH
Q psy16378 132 LQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILG--YWPL-GPMVCDTWLAL 208 (578)
Q Consensus 132 l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~~~ 208 (578)
...+..+.+.+....|..++..+...|+.+++.-.++--..+.|.+.+....+...+..... .... ....=-+.+..
T Consensus 8 v~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p 87 (273)
T PF10316_consen 8 VSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWP 87 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhh
Confidence 34445567777788888888888877774455555666789999999887766555444321 1111 11122223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHH
Q psy16378 209 DYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIV 251 (578)
Q Consensus 209 ~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~ 251 (578)
......+.......||+||.+|+..|..|++...+--...+++
T Consensus 88 ~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~ 130 (273)
T PF10316_consen 88 SSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIII 130 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHH
Confidence 4455577888999999999999999998876554444333333
No 29
>KOG4564|consensus
Probab=97.23 E-value=0.0045 Score=64.02 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=101.5
Q ss_pred EEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCc--------c----ccccccchhhhHHHHHHHHHHHHHHH
Q psy16378 154 FKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGY--------W----PLGPMVCDTWLALDYLASNASVLNLL 221 (578)
Q Consensus 154 i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~--------~----~~~~~~C~~~~~~~~~~~~~S~~~l~ 221 (578)
+..-|++|-..|++=.||.++=++-++..+.........+. + ..+...|+...++...+..+..+-|.
T Consensus 169 f~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~Wml 248 (473)
T KOG4564|consen 169 FLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFWML 248 (473)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33446888888999999999988887666554443332221 1 24667999999999999999988888
Q ss_pred HHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHHHHHH
Q psy16378 222 IISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAA 301 (578)
Q Consensus 222 ~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 301 (578)
+=.+.=|-.++--... .+++....+.+.|.+.+++..+..+..-..++. .|+.........+. .-.-
T Consensus 249 vEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~------~CW~~~~~~~~~WI---i~gP 315 (473)
T KOG4564|consen 249 VEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDT------GCWDSNDTGHIWWI---IRGP 315 (473)
T ss_pred HHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHheeeccc------cccccCCCcceEEE---Eecc
Confidence 8888877777654421 356677788889999999988877765333221 67765543111111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 302 FYIPVSVMIFLYLRIYKETEKRK 324 (578)
Q Consensus 302 ~~lPl~ii~~~y~~I~~~l~~~~ 324 (578)
.++.+++-.++.+.|++.+-++-
T Consensus 316 i~~ai~vNf~flinIvrILv~KL 338 (473)
T KOG4564|consen 316 ILLAILVNFIFLINIVRILVTKL 338 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 23334444555566666665543
No 30
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=96.79 E-value=0.28 Score=48.20 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhhheeeeEEecCCcc-chhHHHHHHHHHHHHHhhhhch--hHHHHHH-------HcCcccccc-cc
Q psy16378 133 QTISNYFLIVTVLGNILVMVSFKIDKTLQ-TISNYFLFSLAVADFAIGAISM--PLFTVYT-------ILGYWPLGP-MV 201 (578)
Q Consensus 133 ~~i~~~i~~~gi~gN~lvi~~i~~~~~lr-~~~~~~i~~LAvaDll~~~~~~--p~~~~~~-------~~~~~~~~~-~~ 201 (578)
..+--+.++++.+-|-+-+..+...|+.+ ..-.++++--|+-|++.++.-+ |..+..+ ..++|.... ..
T Consensus 8 ~~~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l 87 (310)
T PF10319_consen 8 HYIPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSEL 87 (310)
T ss_pred HHHHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchH
Confidence 34455677777888888887888887765 3446778899999999877644 3222221 112232221 12
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHH
Q psy16378 202 CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTA 253 (578)
Q Consensus 202 C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~ 253 (578)
-.......-.+...|-..|..==+.||+++++|..-.+.+.+......+..+
T Consensus 88 ~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~ 139 (310)
T PF10319_consen 88 GQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYC 139 (310)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHH
Confidence 2233334444555666677777899999999986545444444444444333
No 31
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=96.56 E-value=0.083 Score=50.13 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=103.3
Q ss_pred EEecCCccchhHHHHHHHHHHHHHhhhh----chhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 154 FKIDKTLQTISNYFLFSLAVADFAIGAI----SMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYF 229 (578)
Q Consensus 154 i~~~~~lr~~~~~~i~~LAvaDll~~~~----~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~ 229 (578)
++.+.-.+-+..+|+..|.++-++.+.+ .+|..+......+.. .+..-.+..++..++.+.-.++=..||++|+.
T Consensus 39 ~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~idf~h~siLfsNlviaIqR~f 117 (305)
T PF04789_consen 39 ILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLIDFCHYSILFSNLVIAIQRFF 117 (305)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3333333456688999999888777654 456666555555433 33445677888899999999999999999988
Q ss_pred HhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccc--cccceeeeecc----ccchHHHHHHHHHHHHH
Q psy16378 230 SVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGER--RVPYYECYIQF----IETNHYITFLTAIAAFY 303 (578)
Q Consensus 230 aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~--~~~~~~C~~~~----~~~~~~~~~~~~~~~~~ 303 (578)
..-+--...+.+.+.-..+.+..+|++++..-......--.++... ..-...|.... ........+.-.++.+.
T Consensus 118 VFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~~ 197 (305)
T PF04789_consen 118 VFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEIILQFG 197 (305)
T ss_pred eeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHHHHHHh
Confidence 7764333334456677778888999999876544332211111111 11123565431 12233444566678899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16378 304 IPVSVMIFLYLRIYKETEK 322 (578)
Q Consensus 304 lPl~ii~~~y~~I~~~l~~ 322 (578)
+|++ |.+.|+.|..++-.
T Consensus 198 IPi~-Il~iYiAIIiKI~~ 215 (305)
T PF04789_consen 198 IPIF-ILVIYIAIIIKIIK 215 (305)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 9975 45667776665543
No 32
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.32 E-value=0.1 Score=52.68 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=56.6
Q ss_pred eEEecCCccchh-HHHHHHHHHHHHHhhhhchhHHHHHH---H---cC--ccccccccchhhhHHHHHHHHHHHHHHHHH
Q psy16378 153 SFKIDKTLQTIS-NYFLFSLAVADFAIGAISMPLFTVYT---I---LG--YWPLGPMVCDTWLALDYLASNASVLNLLII 223 (578)
Q Consensus 153 ~i~~~~~lr~~~-~~~i~~LAvaDll~~~~~~p~~~~~~---~---~~--~~~~~~~~C~~~~~~~~~~~~~S~~~l~~i 223 (578)
.+.++.-..+.+ .+++.+|..+++=- +...-..+... + .+ ...+...-|.....+..++....++...++
T Consensus 44 ~l~~ksif~~sTr~LL~~~l~~a~~Hq-~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~~~~~~~~~~~~~~~~q~aL 122 (328)
T PF02117_consen 44 KLWKKSIFSNSTRILLISNLLFANIHQ-ISYAIIQIWSLYRSFFYSDDPCSILFTSSECFPYYYFYYFTNSGMIFIQFAL 122 (328)
T ss_pred HHHhCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCeeeEeecCceeeeehHHHHHHHHHHHHHHHH
Confidence 555554445544 66666887777644 32222222211 1 11 245677789999999999999999999999
Q ss_pred HHHHHHHhhcCCCc
Q psy16378 224 SFDRYFSVTRPLTY 237 (578)
Q Consensus 224 aidRy~aI~~P~~~ 237 (578)
.+||.+|-..|-.|
T Consensus 123 ~idRl~at~~~~~~ 136 (328)
T PF02117_consen 123 TIDRLLATFFPKYY 136 (328)
T ss_pred HHHHHHHHhchhhh
Confidence 99999999988654
No 33
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.97 E-value=0.25 Score=50.77 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcc
Q psy16378 205 WLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAK 240 (578)
Q Consensus 205 ~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~ 240 (578)
.+++..-.++...+.+.++++||.+|-.+--.|.+.
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555566777899999999999999998888753
No 34
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.86 E-value=0.56 Score=43.82 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=39.1
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcc
Q psy16378 196 PLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAK 240 (578)
Q Consensus 196 ~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~ 240 (578)
..+...|+.......+.++.+++.-..+++|||+|..+.-+|.+.
T Consensus 79 iI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 79 IIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred EEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 346678888888999999999999999999999999998888753
No 35
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=95.70 E-value=0.08 Score=52.54 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=81.7
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy16378 198 GPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRV 277 (578)
Q Consensus 198 ~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~ 277 (578)
++..=++..++...+.+.+.+.-++.++-|-+.+..|.++. ...++-....+-++.+++++++.|.+...+.+..-+.+
T Consensus 99 Pn~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~-~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~P 177 (307)
T PF10322_consen 99 PNHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHK-KICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPP 177 (307)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchh-HHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCC
Confidence 44556888889999999999999999999999999998754 34445556677788888888888877766544322111
Q ss_pred -cceeeee--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 278 -PYYECYI--QFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRK 324 (578)
Q Consensus 278 -~~~~C~~--~~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~ 324 (578)
+.+.=.. .....+...... .++...+-+++++++++.+++++|+.+
T Consensus 178 f~fGAI~I~~~~~~~~~~~~~~-~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 178 FPFGAIIITSTGSWFNIRNSIF-HLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCCEEEEEEEcccccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 111111122222 223334446778889999999998876
No 36
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=94.27 E-value=0.14 Score=46.38 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=31.0
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy16378 197 LGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLT 236 (578)
Q Consensus 197 ~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~ 236 (578)
..-..|.+..-+...+..+.-...+++|++||+.|+.-.|
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 3567899888776666666677777899999999997443
No 37
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=93.78 E-value=0.041 Score=47.98 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhh
Q psy16378 206 LALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFA 267 (578)
Q Consensus 206 ~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 267 (578)
..+..++.....+..++|+++|-..|.+|++...+++.+|.++-+.+..++.+...+.|++.
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 34556677778889999999999999999976668999999999988888888776666654
No 38
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=92.24 E-value=4.4 Score=39.87 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCccchhHHHHHHHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy16378 158 KTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTY 237 (578)
Q Consensus 158 ~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~ 237 (578)
|....++-.++..+.++++... +.-..+-.+. ...|+ ..|.+...+.......-.....+|+-.=| .|..+...
T Consensus 20 ra~N~~~~~li~Wl~l~nl~~~-INaiIW~~n~-~~~~~---~wCDI~~kl~~~~~~g~~~a~lcI~r~L~-~I~s~r~~ 93 (283)
T PF02076_consen 20 RARNIGTCSLIFWLFLSNLIYF-INAIIWRDND-INWWP---VWCDISTKLIIGSSVGIPAASLCIMRRLY-RIASARAV 93 (283)
T ss_pred HcCcHHHHHHHHHHHHHHHHHH-HhhhhcCCCC-CccCc---eeeeehHHHHHHHHHHHHHHHHHHHHHHH-HHhccccC
Confidence 3334667788889999988763 2221111111 11232 89999988877776665555555544333 34443321
Q ss_pred C--ccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeeccc
Q psy16378 238 R--AKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFI 287 (578)
Q Consensus 238 ~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~ 287 (578)
. ..-++|+..+=+++++.+.++.....++.-+. .....+...|.....
T Consensus 94 ~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~--Rf~I~e~~GC~~~~~ 143 (283)
T PF02076_consen 94 SLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGH--RFDIVEDVGCYPAIY 143 (283)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ceeEecccCCccCCC
Confidence 1 11235666666888888888876665544221 111123346766554
No 39
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=92.06 E-value=4.2 Score=40.83 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHHHHHhhhhchhHHHHH--HHc-C----------ccccc
Q psy16378 132 LQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVY--TIL-G----------YWPLG 198 (578)
Q Consensus 132 l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAvaDll~~~~~~p~~~~~--~~~-~----------~~~~~ 198 (578)
.+....+...+..+.++++++.+..+++..+-...-++-|+++-++.++..+.-.+.. ... + ....+
T Consensus 11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~ 90 (328)
T PF01534_consen 11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE 90 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence 3444444555555555555555555544333334455556666655544333222220 000 0 01234
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy16378 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVP 278 (578)
Q Consensus 199 ~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~ 278 (578)
...|.+...+.+.+..++..--+.+++.=|++...-..... -.++....-+++|.++.+..+..+....... ++-
T Consensus 91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg---D~l 165 (328)
T PF01534_consen 91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDG---DEL 165 (328)
T ss_pred CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhccccc---ccc
Confidence 57999999999999888888889999999999876543222 3456667788999999998877665533322 233
Q ss_pred ceeeeeccccc
Q psy16378 279 YYECYIQFIET 289 (578)
Q Consensus 279 ~~~C~~~~~~~ 289 (578)
.+.|.....+.
T Consensus 166 tGiC~Vg~~~~ 176 (328)
T PF01534_consen 166 TGICFVGNQNP 176 (328)
T ss_pred cceeEEeCCCH
Confidence 45798876543
No 40
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=77.70 E-value=50 Score=34.65 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy16378 306 VSVMIFLYLRIYKETEKRKKEF 327 (578)
Q Consensus 306 l~ii~~~y~~I~~~l~~~~~~~ 327 (578)
.++=-+.|..+.+..|++-++.
T Consensus 373 sclNPiIY~f~~~~FR~~l~~~ 394 (417)
T PHA02638 373 CCINPLIYTLIGENFRMHLLMI 394 (417)
T ss_pred HhhhHHHHHHhCHHHHHHHHHH
Confidence 4456777888888888876543
No 41
>PF13853 7tm_4: Olfactory receptor
Probab=72.72 E-value=0.2 Score=43.96 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeecc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 247 ACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQF-------IETNHYITFLTAIAAFYIPVSVMIFLYLRIYKE 319 (578)
Q Consensus 247 ~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~-------~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~ 319 (578)
..+.++.|+.+++..++...........+..+...|...- ....+.+......+..+.|+.+++++|.+|++.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 3456778888888777765442222222344444555211 011223344444556678999999999999998
Q ss_pred HHHHHh
Q psy16378 320 TEKRKK 325 (578)
Q Consensus 320 l~~~~~ 325 (578)
+.|...
T Consensus 84 vlki~S 89 (144)
T PF13853_consen 84 VLKIPS 89 (144)
T ss_pred hhcccc
Confidence 877643
No 42
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=61.06 E-value=1.8 Score=33.07 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=31.7
Q ss_pred eeeecc-cccc----cC--CC-c-hhhHHHHHHHHhhhccccchhHHhhccHH
Q psy16378 525 ILVLLK-PITT----CS--EC-I-PNGLWDFFYYLCYINSTINPVCYALCNDA 568 (578)
Q Consensus 525 flv~w~-P~~~----~~--~~-~-~~~~~~~~~~L~~~NS~iNPiIY~~~n~~ 568 (578)
++++|+ |+.. .. .. - +.++..+...+.-+|..+|-++|+++-+.
T Consensus 21 Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 21 YIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 889999 7765 11 11 2 24567777788889999999999987553
No 43
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=60.15 E-value=92 Score=30.20 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cCccccchhhhHHHHHHHHHHHHhhhhHHhhcccccccccccceeeeecc
Q psy16378 208 LDYLASNASVLNLLIISFDRYFSVTRPLT-YRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQF 286 (578)
Q Consensus 208 ~~~~~~~~S~~~l~~iaidRy~aI~~P~~-~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 286 (578)
+.....-+--+.+.++|++|++---.|.. .....+.+.....+...+++.++-.+............. .+.. .
T Consensus 88 ~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~-----~~~~-~ 161 (267)
T PF10325_consen 88 ILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNE-----STEE-I 161 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----cchh-h
Confidence 34444455566789999999999999973 122234555555555555554444222222211111100 0000 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16378 287 IETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKK 325 (578)
Q Consensus 287 ~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~ 325 (578)
......+.. ..+... +-+.+...+|+-|+..+||.+.
T Consensus 162 ~~~~~~~~~-~~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 162 ETFSYIYVI-FYIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred hHHHHHHHH-HHHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 011112211 122222 3356678899999999988764
No 44
>KOG4289|consensus
Probab=52.80 E-value=11 Score=44.18 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=33.9
Q ss_pred eecccccccCCCchhhHHHHHHHHhhhccccchhHHhhccHHHHHHHH
Q psy16378 527 VLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYI 574 (578)
Q Consensus 527 v~w~P~~~~~~~~~~~~~~~~~~L~~~NS~iNPiIY~~~n~~FR~~~~ 574 (578)
..|+.-+....-.+-.+..++.-+.++-...=-++|+..|.+-|++.+
T Consensus 2352 atwl~~ll~vn~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2352 ATWLLGLLAVNPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 456655554444555566666667777777777889999999999876
No 45
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=47.29 E-value=36 Score=27.35 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q psy16378 302 FYIPVSVMIFLYLRIYKETEKRKKEFSNLQAAG 334 (578)
Q Consensus 302 ~~lPl~ii~~~y~~I~~~l~~~~~~~~~~~~~~ 334 (578)
++.+++++.++|+.|+|--+++.+++.++.++-
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL 44 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKEHQELLNSL 44 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Confidence 344466778899999999988888877766553
No 46
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=38.86 E-value=80 Score=23.60 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q psy16378 295 FLTAIAAFYIPVSVM-IFLYLRIYKETEKRKKEF 327 (578)
Q Consensus 295 ~~~~~~~~~lPl~ii-~~~y~~I~~~l~~~~~~~ 327 (578)
++..++..+.|+.++ .+|..++.+.+.+..++.
T Consensus 22 Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere~ 55 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLSWKLAKAIEKEEREK 55 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566675554 567778888887665543
No 47
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=31.41 E-value=7.4e+02 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhHHhhcccccccccccceeeeecc-ccchHHH
Q psy16378 249 MIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQF-IETNHYI 293 (578)
Q Consensus 249 ~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~~ 293 (578)
+..+.|..+..+.......|.............|.... .+++...
T Consensus 492 ~~~~~W~~a~yff~~~~t~w~~tpA~SR~lN~~Cil~~f~D~HDiw 537 (570)
T PF13965_consen 492 LAFVSWGFALYFFFQNTTDWTLTPAESRELNKECILLGFFDWHDIW 537 (570)
T ss_pred HHHHHHHHHHHHHhccCCccccChHhHHhcCCCCcCcCccccHHHH
Confidence 34556777766544333333332222222334676533 3444433
No 48
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=28.81 E-value=83 Score=26.13 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy16378 304 IPVSVMIFLYLRIYKETEKRKKEFSNLQAA 333 (578)
Q Consensus 304 lPl~ii~~~y~~I~~~l~~~~~~~~~~~~~ 333 (578)
+|+++++..|+.++|--+|+.++.+.+..+
T Consensus 7 l~~vv~~~i~yf~iRPQkKr~Ke~~em~~s 36 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQKKQAQERQNQLNA 36 (113)
T ss_pred HHHHHHHHHHHheechHHHHHHHHHHHHHh
Confidence 344444433333565556665555555444
No 49
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.83 E-value=1.9e+02 Score=24.78 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=22.3
Q ss_pred cceeeeeccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy16378 278 PYYECYIQFIETNHYITF-LTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNL 330 (578)
Q Consensus 278 ~~~~C~~~~~~~~~~~~~-~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~~~~ 330 (578)
.+..|..........+.. +.+++.++++.++ +.++|++..+|++|+....
T Consensus 13 ~y~ecls~~~~psffsthm~tILiaIvVliii---iivli~lcssRKkKaaAAi 63 (189)
T PF05568_consen 13 HYGECLSPVTPPSFFSTHMYTILIAIVVLIII---IIVLIYLCSSRKKKAAAAI 63 (189)
T ss_pred hhhhhcCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHhhh
Confidence 345676554333332222 2223334443333 3345666666666555443
No 50
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=27.60 E-value=1.2e+02 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy16378 306 VSVMIFLYLRIYKETEKRKKEFSNLQ 331 (578)
Q Consensus 306 l~ii~~~y~~I~~~l~~~~~~~~~~~ 331 (578)
++++.++|..+++--+|+.++.+.+.
T Consensus 9 v~~~~i~yf~~~rpqkk~~k~~~~m~ 34 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHHhhheecHHHHHHHHHHHHH
Confidence 35667778777777776666554443
No 51
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=27.10 E-value=3.3e+02 Score=28.83 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=31.8
Q ss_pred CcchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhh
Q psy16378 96 FTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNIL 149 (578)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~l 149 (578)
+..-.+.++.+++++++++.++.+-+... ++|...++-+.++.+++.++=|.+
T Consensus 176 fGVD~~t~l~v~l~lL~IV~iVAteLwt~-V~W~~Ql~R~fvisFLiS~~WNWi 228 (549)
T PF05934_consen 176 FGVDPYTVLMVLLCLLCIVAIVATELWTY-VSWFTQLRRMFVISFLISFGWNWI 228 (549)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666677777777776443332 556666666666666666666653
No 52
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.90 E-value=1.1e+02 Score=23.90 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy16378 306 VSVMIFLYLRIYKETEKRKKEFSNLQAA 333 (578)
Q Consensus 306 l~ii~~~y~~I~~~l~~~~~~~~~~~~~ 333 (578)
+++++++|..+.+--+|+.++.+.+.++
T Consensus 10 vv~~~i~yf~~~rpqkK~~k~~~~m~~~ 37 (84)
T TIGR00739 10 VLIFLIFYFLIIRPQRKRRKAHKKLIES 37 (84)
T ss_pred HHHHHHHHHheechHHHHHHHHHHHHHh
Confidence 3445677888888888877776666554
No 53
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=26.37 E-value=1e+02 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 294 TFLTAIAAFYIPVSVMIFLYLRI 316 (578)
Q Consensus 294 ~~~~~~~~~~lPl~ii~~~y~~I 316 (578)
.++...++.++|.+.+++.|++.
T Consensus 7 gfiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 7 GFVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHheec
Confidence 34455667789999999998763
No 54
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=26.22 E-value=1.5e+02 Score=24.47 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy16378 303 YIPVS-VMIFLYLRIYKETEKRKKEFSNLQAA 333 (578)
Q Consensus 303 ~lPl~-ii~~~y~~I~~~l~~~~~~~~~~~~~ 333 (578)
++|++ ++.++|+.+++--+|+.++...+..+
T Consensus 7 ll~lv~i~~i~yF~~iRPQkKr~K~~~~m~~~ 38 (109)
T PRK05886 7 FLPFLLIMGGFMYFASRRQRKAMQATIDLHES 38 (109)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHh
Confidence 34443 45677877777766666665555444
No 55
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.44 E-value=6.6e+02 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q psy16378 214 NASVLNLLIISFDRYFSVTRPL 235 (578)
Q Consensus 214 ~~S~~~l~~iaidRy~aI~~P~ 235 (578)
..-+|.++.+.+|||+...-..
T Consensus 51 ~glvwgl~I~~lDR~ivss~~~ 72 (301)
T PF14362_consen 51 FGLVWGLVIFNLDRFIVSSIRK 72 (301)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3467889999999999886644
No 56
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=25.41 E-value=1.1e+02 Score=18.98 Aligned_cols=22 Identities=18% Similarity=0.647 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16378 294 TFLTAIAAFYIPVSVMIFLYLR 315 (578)
Q Consensus 294 ~~~~~~~~~~lPl~ii~~~y~~ 315 (578)
.++...++.++|.+..++.|++
T Consensus 7 ~fiAt~Lfi~iPt~FLiilYvq 28 (33)
T TIGR03038 7 GFIATLLFILVPTVFLLILYIQ 28 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHhee
Confidence 3445566778999999999875
No 57
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=24.31 E-value=7.9e+02 Score=25.28 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16378 299 IAAFYIPVSVMIFLYLRIYKETEKRKKEF 327 (578)
Q Consensus 299 ~~~~~lPl~ii~~~y~~I~~~l~~~~~~~ 327 (578)
+..-++|++.++..=+|+.|..+.|+++.
T Consensus 307 ~~la~i~~i~l~~~vvR~vR~~~~hr~~~ 335 (374)
T PF01528_consen 307 INLAVIAIICLIMMVVRLVRAFLYHRRRS 335 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33455677777777788888887776643
No 58
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=24.29 E-value=2.1e+02 Score=28.33 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHH-HHHHHHhhhhchhHHHHHHHcCccccccccchh
Q psy16378 136 SNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSL-AVADFAIGAISMPLFTVYTILGYWPLGPMVCDT 204 (578)
Q Consensus 136 ~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~L-AvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~ 204 (578)
..++.++|++.|++..+.+.+.+ ....|.=-+.| +++|++..+..+...+...+.+ |..-+..+.+
T Consensus 127 ml~va~~GL~vN~~~a~ll~~~~--~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~-w~~~Dpi~si 193 (296)
T COG1230 127 MLVVAIIGLVVNLVSALLLHKGH--EENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTG-WSWLDPILSI 193 (296)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccchHHHH
Confidence 56788899999999998777651 12334444455 4589998777776666666665 5555554433
No 59
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=24.19 E-value=1.8e+02 Score=17.87 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16378 295 FLTAIAAFYIPVSVMIFLYLRI 316 (578)
Q Consensus 295 ~~~~~~~~~lPl~ii~~~y~~I 316 (578)
+....++.++|.+..++.|++-
T Consensus 8 fiAtaLfi~iPt~FLiilyvqT 29 (31)
T PF05151_consen 8 FIATALFILIPTAFLIILYVQT 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheEeee
Confidence 3444566778999999998864
No 60
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=23.74 E-value=5.5e+02 Score=23.22 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHhh
Q psy16378 207 ALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFA 267 (578)
Q Consensus 207 ~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 267 (578)
.+..++...|.+.|..|...++..-..|..- .-.++....|=..|..|+.+.++.++.
T Consensus 66 ~v~l~almisT~iL~~I~~~~~~~~~~~~~~---sP~~~f~~~cE~~W~~s~~lGi~lFL~ 123 (175)
T PF07856_consen 66 AVHLFALMISTCILPSIEAVSFIHNYSPVPP---SPHRRFHRYCELAWRFSTVLGIPLFLA 123 (175)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhccCCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777777777765566555555211 122222333777899999987776654
No 61
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.19 E-value=3e+02 Score=19.98 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy16378 295 FLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNL 330 (578)
Q Consensus 295 ~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~~~~ 330 (578)
...+++++++-.++...-+.+.-+.+++.+++.+..
T Consensus 25 l~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~l 60 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKL 60 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666666655555443
No 62
>PF15383 TMEM237: Transmembrane protein 237
Probab=22.88 E-value=3.5e+02 Score=26.11 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCCCcCccccchhhhHHHHHHHHHHHHhhhhHHh
Q psy16378 221 LIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIF 266 (578)
Q Consensus 221 ~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 266 (578)
+.-++|||-.=.......+...+.....+.+++|++++++++....
T Consensus 153 ~VSafDr~dl~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~~~ 198 (253)
T PF15383_consen 153 TVSAFDRYDLAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSCQM 198 (253)
T ss_pred HHhhhhhHHhhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 3346788754333333233445555566777789999888765443
No 63
>CHL00080 psbM photosystem II protein M
Probab=20.79 E-value=1.4e+02 Score=18.63 Aligned_cols=23 Identities=13% Similarity=0.599 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16378 294 TFLTAIAAFYIPVSVMIFLYLRI 316 (578)
Q Consensus 294 ~~~~~~~~~~lPl~ii~~~y~~I 316 (578)
.++...++..+|.+.+++.|++.
T Consensus 7 gfiAt~LFi~iPt~FLlilyvkT 29 (34)
T CHL00080 7 AFIATALFILVPTAFLLIIYVKT 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHhheee
Confidence 34455566778999999988753
No 64
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.40 E-value=3e+02 Score=27.47 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhheeeeEEecCCccchhHHHHH-HHHHHHHHhhhhc
Q psy16378 136 SNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLF-SLAVADFAIGAIS 182 (578)
Q Consensus 136 ~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~-~LAvaDll~~~~~ 182 (578)
..++.++|++.|++......+.++.++. ++--. -=...|.+.++..
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~s~-~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 124 MMAIAVAGLLANILSFWLLHHGSEEKNL-NVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCH-HHHHHHHHHHHHHHHHHHH
Confidence 4456677888898765544443333333 22211 2246787765543
No 65
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.35 E-value=34 Score=32.94 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16378 301 AFYIPVSVMIFLYLRIYKET 320 (578)
Q Consensus 301 ~~~lPl~ii~~~y~~I~~~l 320 (578)
..++-+.+++++|+.=.+..
T Consensus 172 WL~LFlaiLIWlY~H~~~~~ 191 (381)
T PF05297_consen 172 WLLLFLAILIWLYVHDQRHA 191 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 33344567777777666543
Done!