RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16378
(578 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 146 bits (371), Expect = 3e-40
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 157 DKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNAS 216
K L+T +N FL +LAVAD P Y + G WP G +C L + AS
Sbjct: 6 TKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYAS 65
Query: 217 VLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILW-PPWIFAWPYIEGER 275
+L L IS DRY ++ PL YR RT +RA +I+ W ++++L PP +F+W E
Sbjct: 66 ILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEG 125
Query: 276 RVPYYECYIQFIETNH--YITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAA 333
V C I F E + T L+ + F +P+ V++ Y I + KR + ++ A
Sbjct: 126 NV--TTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARA 183
Query: 334 GKKDSSKRSTSRI 346
+ S +R +++
Sbjct: 184 KRSSSKERKAAKM 196
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 495 AKLLGKQVALGKKKKKSQEK-KAERKAAKTL---------------ILVLLKPI-TTCSE 537
+ L K+ G + +++ ERKAAK L I++LL +
Sbjct: 167 LRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226
Query: 538 CIPNGLWDFFYYLCYINSTINPVCY 562
+ +L Y+NS +NP+ Y
Sbjct: 227 RLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 71.0 bits (174), Expect = 3e-13
Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 131 TLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYT 190
L + + ++GNI+V+ ++T + +L +LAV+D + +++P Y
Sbjct: 42 ILIVVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDL-LFVMTLPFQIYYY 99
Query: 191 ILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRA--AC 248
IL W G C L Y+ S+ + ++S DRY ++ P+ T K
Sbjct: 100 ILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVS 159
Query: 249 MIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNH-------YITFLTAIAA 301
+++ W +S+I P +F + ++ +E I + N+ +I F I
Sbjct: 160 LVI--WIISIIETTPILFVY---TTKK---DHETLICCMFYNNKTMNWKLFINFEINIIG 211
Query: 302 FYIPVSVMIFLYLRIYKETEKRKKEFSNLQA 332
IP++++++ Y +I + K N +A
Sbjct: 212 MLIPLTILLYCYSKILITLKGINKSKKNKKA 242
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 70.4 bits (172), Expect = 7e-13
Identities = 65/308 (21%), Positives = 139/308 (45%), Gaps = 23/308 (7%)
Query: 36 TATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFL---DK 92
++TT+ + ++SS + TT+ + T++ + + S F+ + PTS +
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIIST--FTEIIPTEIPTSESPSPNSNS 60
Query: 93 EPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSF-KIDKTLQTISNYFLIVTVLGNILVM 151
+++ I + +I L NI + I + ++ I+ + GN +
Sbjct: 61 SSSSSSSSSSITYDYEYENNITYELINIKNKCMYPSISEYIKIFYIIIFILGLFGNAAI- 119
Query: 152 VSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYL 211
+ K ++TI++ ++F+LA++D I I P F +Y W G +C A Y+
Sbjct: 120 IMILFCKKIKTITDIYIFNLAISDL-IFVIDFP-FIIYNEFDQWIFGDFMCKVISASYYI 177
Query: 212 ASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIF----- 266
+++ + ++S DRYF++ P++++ RT + + +W +S+I+ P F
Sbjct: 178 GFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEAS 237
Query: 267 --AWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAF-------YIPVSVMIFLYLRIY 317
+ + + Y+C + + I+FL I F +IP+ + F Y++I
Sbjct: 238 NIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKII 297
Query: 318 KETEKRKK 325
+ ++ KK
Sbjct: 298 LKLKQLKK 305
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 49.9 bits (119), Expect = 2e-06
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 15/190 (7%)
Query: 137 NYFLIV--------TVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTV 188
NYF+IV ++GN+LV+ + + + + Y LF++A++D + S P F +
Sbjct: 28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVY-LFNIAMSDLML-VFSFP-FII 84
Query: 189 YTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAAC 248
+ L W G +C L + ++ +++ + +IS DRY V + K + +
Sbjct: 85 HNDLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNK-SISLSVL 143
Query: 249 MIVTAWGVSMILWPPWIFAWPYIEGERRVPYY--ECYIQFIETNHYITFLTAIAAFYIPV 306
+ V AW S+IL P + + Y++ + Y + + + F I IP+
Sbjct: 144 LSVAAWVCSVILSMPAMVLY-YVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPL 202
Query: 307 SVMIFLYLRI 316
++I+ Y +I
Sbjct: 203 IILIYCYSKI 212
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 39.9 bits (94), Expect = 0.002
Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 140 LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGP 199
++ + GN+++++ K L++ +Y + +AD + +S + V + L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLAD--LLCLSGEIIFVVLLFTGTQLTR 58
Query: 200 MVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKR--AACMIVTAWGVS 257
C + A +L+I DR +V P+ YR ++K + +
Sbjct: 59 NECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQLIFPVIYSSF 118
Query: 258 MILWPPWIFAWPYIEGERRVPYYECYIQFIETNH-YITFLTAIAAFYIPVS-VMIFLYLR 315
I + ++E + C + F + + V V I L +
Sbjct: 119 -------ILVYGFLERDDETIIV-CAPPLALNGTAFRIFTLSSVIINVIVLIVYIILIII 170
Query: 316 IYKETEKRKKEFSNL 330
K+ + + +
Sbjct: 171 FKKKGQTTNSDSKKV 185
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 32.4 bits (74), Expect = 0.093
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 496 KLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPITTCSE 537
KL GK++ + KKKKK ++K ++ T + + +E
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVT---EKEEEEKSSAE 49
>gnl|CDD|223633 COG0559, LivH, Branched-chain amino acid ABC-type transport system,
permease components [Amino acid transport and
metabolism].
Length = 297
Score = 34.5 bits (80), Expect = 0.14
Identities = 39/167 (23%), Positives = 56/167 (33%), Gaps = 33/167 (19%)
Query: 166 YFLFSLA---------VADFAIGAISM--PLFTVYTILGYWPLGPMVCDTWLALDYLASN 214
Y L +L V +FA G M + PLG L L
Sbjct: 20 YALLALGLTLVYGVLRVINFAHGEFFMLGAYAAYLAVALLGPLG------ALGLLLALPL 73
Query: 215 ASVLNLLI-ISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEG 273
A + LI + +R V RPL R A +++ GVS+IL I G
Sbjct: 74 AFAITALIGLLIERL--VLRPLRGRP------ALALLIATLGVSLIL----QGLARLIFG 121
Query: 274 ERRVPYYECYIQFIETNHYITFLTAIAAFYIPVS--VMIFLYLRIYK 318
R V + L F I VS +++ L+L + +
Sbjct: 122 PRPVGLPP-ALSGSVRFLGGVTLPTYRLFIIAVSLALLLGLWLLLRR 167
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 32.6 bits (75), Expect = 0.55
Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 24/214 (11%)
Query: 144 VLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCD 203
++ N L+ F +L+ + A+++ I I + T+L P + +
Sbjct: 8 IILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDL-SFLPELLN 66
Query: 204 TWL--ALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILW 261
+ + + S L L+IS +R+ +V P Y+ + K +I W +++I
Sbjct: 67 SHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAII-- 124
Query: 262 PPWIFAWPYIEGERRVPYYECYIQFI--------ETNHYITFLTAIAAFYIPVSVMIFLY 313
I Y Y + + E Y FL + I + + +
Sbjct: 125 ---ISTLFYFPLGCHFYYSPESLTWSFDEDPPCAEIGWYGDFLKNLVLVIITNIINVITF 181
Query: 314 LRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRIN 347
+++ K FS + ++S KR IN
Sbjct: 182 IKLRK--------FSKKSSLSSEESKKRRKKEIN 207
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a more
conserved N-half that is predicted to form coiled coils.
Consistent with this, circular dichroism studies have
demonstrated that much of the protein is alpha-helical.
Remorins exist in plasma membrane preparations as
oligomeric structures and form filaments in vitro. The
proteins can bind polyanions including the extracellular
matrix component oligogalacturonic acid (OGA). In vitro,
remorin in plasma membrane preparations is
phosphorylated (principally on threonine residues) in
the presence of OGA and thus co-purifies with a protein
kinases(s). The biological functions of remorins are
unknown but roles as components of the
membrane/cytoskeleton are possible.
Length = 112
Score = 30.0 bits (68), Expect = 1.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 489 KMMNKNAKLLGKQVALGKK-----KKKSQEKKAERKAAK 522
K+ NK A + A K+ K+ +E KAE KAAK
Sbjct: 64 KLKNKLAAA--HKKAEEKRATAEAKRGEEEAKAEEKAAK 100
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 31.6 bits (72), Expect = 1.3
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 23 LNTSAINNLPPTTTATTTV---FTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLT 79
L T A++ LPP A + FT + S+ T TT+L N T S LT
Sbjct: 369 LTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI-----TTILTNRTQ---FHHSQLT 420
Query: 80 TMVTPTSPYFLDK 92
+ P +P FL
Sbjct: 421 ETINPVNPNFLSG 433
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 31.4 bits (71), Expect = 1.3
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 14/134 (10%)
Query: 37 ATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRF 96
A T THF AS W + +L N+ S F + + TP F K +
Sbjct: 335 AFTEAMTHFPASPF-----WSVMFFLMLVNLGLGS--MFGTIEGITTPIVDTF--KVRKE 385
Query: 97 TTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKI 156
T + + F L V GN V + TL LIV +L NI V + I
Sbjct: 386 ILTVICCLFAFLIGLIFVQRSGNYFVTMFDDYSATLP-----LLIVVILENIAVAWIYGI 440
Query: 157 DKTLQTISNYFLFS 170
K ++ + + F
Sbjct: 441 KKFMEDLKDMLGFR 454
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 31.2 bits (70), Expect = 1.6
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 312 LYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQE 360
LY ++YKE EK KK +++A K+ +K NRK RK IQE
Sbjct: 79 LYSKLYKEAEKIKKWKVSIEAELKQKENKLQE---NRKIIEAQRKAIQE 124
>gnl|CDD|221923 pfam13102, DUF3946, Protein of unknown function (DUF3946). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences. This family appears
related to the N-terminal domain of phage integrases.
Length = 140
Score = 29.9 bits (68), Expect = 1.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 310 IFLYLRIYKETEKRKKEFSNL 330
LYL IY + KRK EF L
Sbjct: 13 KSLYLDIYPKNGKRKYEFLGL 33
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 30.4 bits (68), Expect = 2.7
Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 372 EDPDCDLDDTP-SDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTI 430
+DPD DT D+G P S + TSL+ I+ S KQ+ P + +
Sbjct: 182 DDPDFIEYDTIYEDMGCEIQPSSSNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDV 241
Query: 431 LIR----LPLETDGSGDQPSIKMIPDENL--PRLGKHPDFPAQNAAALNRRPSHISDIRI 484
I P+ SI P L D + S +
Sbjct: 242 SISDRATTPIAPGVESASQSISSTPTPVSTDTPLHTVKDDS------IKFDNSTLGTPTT 295
Query: 485 PLNAKMMNKNAKLLGKQVALGKK----KKKSQEKKAERKAA 521
++ K +Q+ K +K+ + E AA
Sbjct: 296 HVSMKKKESEND-SEQQLNFPKDSTDEIRKTIQHDVETNAA 335
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 30.7 bits (69), Expect = 2.7
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 37 ATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRF 96
A T THF AS W + +L N+ S F + ++TP F ++
Sbjct: 385 AFTEAMTHFPASPF-----WSVMFFLMLVNLGLGS--MFGTIEGIITPIVDTFKVRKEIL 437
Query: 97 TTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKI 156
T ++ F L V GN V + TL LIV +L NI V + I
Sbjct: 438 TVICCLL--AFCIGLIFVQRSGNYFVTMFDDYSATLP-----LLIVVILENIAVSFVYGI 490
Query: 157 DKTLQTISNYFLFS 170
DK ++ + + F+
Sbjct: 491 DKFMEDLKDMLGFT 504
>gnl|CDD|237801 PRK14719, PRK14719, bifunctional
RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase;
Provisional.
Length = 360
Score = 30.3 bits (68), Expect = 2.9
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 456 PRLGKH--PDFPAQNAAALNRRPSHI---SDIRIPLNAKMMNKNAKLLGKQVALGKKKKK 510
PRL H P N P I S+++IPLNA+++NK+AK + +
Sbjct: 194 PRLTVHKINASPKDN-------PLRIVVDSNLKIPLNARVLNKDAKTV-----IATTTPI 241
Query: 511 SQEKKAE-RKAAKTLILVL 528
S EK+ + RK + I VL
Sbjct: 242 SDEKEEKIRKLKEMGITVL 260
>gnl|CDD|224266 COG1347, NqrD, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrD [Energy production and conversion].
Length = 208
Score = 29.7 bits (67), Expect = 2.9
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 80 TMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYF 139
T+VT S +F+ + V II A S+V V+ L ++++ K L
Sbjct: 49 TLVTGFSSFFVSLIRNYIPNSVRIIVQMAIIASLVIVVDQFLKAYAYELSKQLSVFVG-- 106
Query: 140 LIVTVLGNILVM 151
LI+T N +VM
Sbjct: 107 LIIT---NCIVM 115
>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor. This is a family
of TCP plant transcription factors. TCP proteins were
named after the first characterized members (TB1, CYC
and PCFs) and they are involved in multiple
developmental control pathways. This region contains a
DNA binding basic-Helix-Loop-Helix (bHLP) structure.
Length = 122
Score = 28.8 bits (65), Expect = 3.1
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 332 AAGKKD-SSKRSTSRINRKPR 351
AAGKKD SKR T R R
Sbjct: 1 AAGKKDRHSKRHTKVGGRDRR 21
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 29.8 bits (67), Expect = 3.6
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 111 LSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFS 170
L I + +LV+V + ID + + F +V + +L+ +D SN+
Sbjct: 280 LQIALFVAPVLVIVGWMIDVPMTLNFSTFELVALFIAVLLSNYISLDGE----SNWLEGV 335
Query: 171 LAVADFAIGAIS 182
+ +A + I A++
Sbjct: 336 MLLAMYIIIAMA 347
>gnl|CDD|216852 pfam02028, BCCT, BCCT family transporter.
Length = 484
Score = 30.2 bits (69), Expect = 3.8
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 94 PRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNY--------FLIVTVL 145
P T Q+IIIA A +I V G +DK ++ +SN L V ++
Sbjct: 213 PNTLTLQLIIIAIITALFTISAVSG---------LDKGIKRLSNLNMWLALALLLFVLIV 263
Query: 146 GNILVMVSFKIDKTLQTISNYFLFSLAVADFA 177
G L +++ + + N+ SL F
Sbjct: 264 GPTLFILNTFVQSIGDYLQNFVRMSLWTDPFG 295
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 29.8 bits (68), Expect = 5.3
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 491 MNKNAKLLGKQVALGKKKKKSQEKKAE 517
M + AKLL KQV ++ K K A
Sbjct: 353 MTEAAKLLNKQV---ERGKIDGAKMAG 376
>gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 230
Score = 28.9 bits (65), Expect = 6.1
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 8/154 (5%)
Query: 75 FSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQT 134
L ++ FL K ++ + L + + G +L F + L
Sbjct: 78 IKLLLSLPISRGKIFLAK---LLVLLILSLLASLLLLLLSLIAGLLLGGSGFSLSLLLGA 134
Query: 135 ISNYF---LIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTI 191
+ L+ +L +++ +S + + I L L +G++ + L ++
Sbjct: 135 LLLLLLLSLLALLLILLILFLSLLLRNSAVAIGIGLLLILLG--LLLGSLPLWLLFPWSY 192
Query: 192 LGYWPLGPMVCDTWLALDYLASNASVLNLLIISF 225
L L + + L L+ +++ +LI+
Sbjct: 193 LPLIVLLSLSLNGTLLSSGLSIIIALIVILILFI 226
>gnl|CDD|235518 PRK05585, yajC, preprotein translocase subunit YajC; Validated.
Length = 106
Score = 27.6 bits (62), Expect = 6.2
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 304 IPVSVMI-FLYLRIYKETEKRKKEFSNLQAAGKK 336
+P+ V Y I + +KR+KE + ++ K
Sbjct: 22 LPLVVFFAIFYFLIIRPQQKRQKEHKKMLSSLAK 55
>gnl|CDD|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 499
Score = 29.2 bits (66), Expect = 7.7
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 88 YFLDKEPRFTTT-QVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYF 139
LD + RFT T ++ A FL + D Q++S F
Sbjct: 262 LSLDPKLRFTLTLLLLATGLLALFLLELNNPDGGYSFFLSLRDAFFQSVSAIF 314
>gnl|CDD|227937 COG5650, COG5650, Predicted integral membrane protein [Function
unknown].
Length = 536
Score = 28.9 bits (65), Expect = 8.0
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 234 PLTYRAKRT--TKRAACMIVTAWGVSMILWPPWIFAWPY 270
PL Y + + A I TA +++ P+I P
Sbjct: 259 PLLYLIYKEYGLRPAIKFIATAAITWLLVNLPFIILGPR 297
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 28.7 bits (65), Expect = 8.6
Identities = 45/207 (21%), Positives = 70/207 (33%), Gaps = 38/207 (18%)
Query: 138 YFLIVTVLG---NILVM--VSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTI- 191
Y+ I +LG N+L++ + FK K+L+T L + A+ + + FT I
Sbjct: 4 YYPIFFILGLILNLLLLYLIIFKSPKSLRTYR-ILLLNTALTQII--SCILAFFTQQRII 60
Query: 192 -----LGYWP------LGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAK 240
L GP C + +L S +LL+ + RY+ + K
Sbjct: 61 PNGVSLALISYGPCKYFGPWFCYSGYSLLLHFLLHSGWSLLLTFYYRYYILKHV---DPK 117
Query: 241 RTTKRAACMIVTAWGVSM----ILWPPWIFAWPYIEGERRVPYY----ECYIQFIETNH- 291
R + +S I P F E + P Y F +
Sbjct: 118 RKKLILIFFLHYIPSLSQLLIVIFLVPTDFLPVEAETKELHPNYNLTDYTVTGFSDLQSF 177
Query: 292 ---YITFLTAIAAFYIPVSVMIFLYLR 315
T + I F IP+ I L LR
Sbjct: 178 PALINTLIMTIPVFPIPI---IILILR 201
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 28.3 bits (64), Expect = 9.1
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 93 EPRFTTTQVII---IATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNIL 149
E +Q + I + ++ +L ++SF D + + + ++LI + NIL
Sbjct: 116 EKYVLISQKSLHKYIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNIL 175
Query: 150 VMVS 153
+ +S
Sbjct: 176 LFLS 179
>gnl|CDD|219128 pfam06666, DUF1173, Protein of unknown function (DUF1173). This
family contains a group of hypothetical bacterial
proteins that contain three conserved cysteine residues
towards the N-terminal. The function of these proteins
is unknown.
Length = 385
Score = 28.4 bits (64), Expect = 9.6
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 365 WWHSGREEDPDCD---LDDTPSDIGGYATPVSVET 396
SG E P C S +G ET
Sbjct: 56 MPLSGAEHAPACPSYEPPPELSGLGELVGGAIQET 90
>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid
dehydrogenases, NAD-binding and catalytic domains.
2-Hydroxyacid dehydrogenases catalyze the conversion of
a wide variety of D-2-hydroxy acids to their
corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 321
Score = 28.4 bits (64), Expect = 9.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 513 EKKAERKAAKTLILVLLKPITTCSECIPNGLW 544
E+ A + A LIL +L+ I SE + G W
Sbjct: 103 ERDAVAEHAVALILTVLRKINQASEAVKEGKW 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.417
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,117,082
Number of extensions: 2823479
Number of successful extensions: 3135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3099
Number of HSP's successfully gapped: 103
Length of query: 578
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 476
Effective length of database: 6,413,494
Effective search space: 3052823144
Effective search space used: 3052823144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.6 bits)