RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16378
(578 letters)
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 332 bits (851), Expect = e-108
Identities = 160/455 (35%), Positives = 225/455 (49%), Gaps = 45/455 (9%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
+VT++GNILVMVS K+++ LQT++NYFLFSLA AD IG SM L+T+YT++GYWPLG
Sbjct: 33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLG 92
Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
P+VCD WLALDY+ SNASV+NLLIISFDRYF VT+PLTY KRTTK A MI AW +S
Sbjct: 93 PVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSF 152
Query: 259 ILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYK 318
ILW P I W +I G R V ECYIQF +N +TF TAIAAFY+PV +M LY I +
Sbjct: 153 ILWAPAILFWQFIVGVRTVEDGECYIQFF-SNAAVTFGTAIAAFYLPVIIMTVLYWHISR 211
Query: 319 ETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDCDL 378
++ R F L+ +
Sbjct: 212 ASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIG--------------------------- 244
Query: 379 DDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLET 438
+ + + ++ + + R T+ + KD ++ V IL L+
Sbjct: 245 --IGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKP 302
Query: 439 DGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLL 498
+ + ++G+ N+ + ++ ++ N+
Sbjct: 303 VYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRA 362
Query: 499 GKQVALGK--KKKKSQEKKAERKAAKTLILVLLKPITT-------------CSECIPNGL 543
+ + + E+K +T++ +LL I T C+ CIPN +
Sbjct: 363 KRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTV 422
Query: 544 WDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
W Y+LCYINSTINP CYALCN F+ T+ +L
Sbjct: 423 WTIGYWLCYINSTINPACYALCNATFKKTFKHLLM 457
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 320 bits (821), Expect = e-104
Identities = 104/453 (22%), Positives = 167/453 (36%), Gaps = 41/453 (9%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
+VTV N+LV+ + + ++ L T+ N ++ SL+VAD +GA+ MP+ +Y ++ W LG
Sbjct: 18 ICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLG 77
Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
+C WL++DY+AS AS+ ++ I+ DRY SV +PL Y RT RA+ I+ AW +S
Sbjct: 78 RPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSF 137
Query: 259 ILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYK 318
+ P + +++ +C F + +TAI FY+P +M++ Y +IYK
Sbjct: 138 LWVIPILGWNHFMQQTSVRREDKCETDFY-DVTWFKVMTAIINFYLPTLLMLWFYAKIYK 196
Query: 319 ETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDCDL 378
+ F L+ +
Sbjct: 197 AVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL---------------------- 234
Query: 379 DDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLET 438
T S A + + T K + R L +
Sbjct: 235 --TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 292
Query: 439 DGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLL 498
D I M+ + + + N +
Sbjct: 293 DAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVIT 352
Query: 499 GKQVALGKKKKKSQEKKAERKAAKTLILVLLKPITT-------------CSECIPNGLWD 545
+ ERKAAK L ++ I C C L
Sbjct: 353 TFR---TGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHM 409
Query: 546 FFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
F +L YINST+NP+ Y LCN+ F+ T+ RIL
Sbjct: 410 FTIWLGYINSTLNPLIYPLCNENFKKTFKRILH 442
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 300 bits (770), Expect = 8e-96
Identities = 82/455 (18%), Positives = 161/455 (35%), Gaps = 43/455 (9%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
++ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + ++ W G
Sbjct: 50 IVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFG 109
Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS
Sbjct: 110 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 169
Query: 259 -ILWPPWIFAWPYIEGERRVPYYECYIQ-FIETNHYITFLTAIAAFYIPVSVMIFLYLRI 316
+ P W + + Y TN ++I +FY+P+ +M+F+Y R+
Sbjct: 170 LTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 229
Query: 317 YKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDC 376
++E +++ F L+ + + +
Sbjct: 230 FQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGH------------LLTKSPSLNA 277
Query: 377 DLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPL 436
+ IG V + ++ V + P
Sbjct: 278 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPV------------YD 325
Query: 437 ETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAK 496
D I M+ + + + + ++ + + N+ +
Sbjct: 326 SLDAVRRAALINMVFQMGETGVAGFTN-SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKR 384
Query: 497 LLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPITT-------------CSECIPNGL 543
++ + E KA KTL +++ I +
Sbjct: 385 VITTF--RTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEV 442
Query: 544 WDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
+ ++ Y+NS NP+ Y + FR + +L
Sbjct: 443 YILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC 476
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 283 bits (725), Expect = 3e-89
Identities = 80/462 (17%), Positives = 149/462 (32%), Gaps = 52/462 (11%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
++ +LGN+LV + ++ LQ ++NYF+ SLA AD A+G +++P I +
Sbjct: 33 VLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACH 90
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
C + + +S+ +LL I+ DRY ++ PL Y T RA +I W +S +
Sbjct: 91 GCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 150
Query: 261 WPPWIFAWPYIEGERRV---------PYYECYIQFIETNHYITFLTAIAAFYIPVSVMIF 311
+ W + C + + +Y+ + A +P+ +M+
Sbjct: 151 GLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLG 210
Query: 312 LYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGRE 371
+YLRI+ ++ F L+ +
Sbjct: 211 VYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL--------------- 255
Query: 372 EDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTIL 431
T S A + + T K + R L
Sbjct: 256 ---------TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKL 306
Query: 432 IRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMM 491
+ D I M+ + + + + ++ + +
Sbjct: 307 KPVYDSLDAVRRAALINMVFQMGETGVAGFTNSL-RMLQQKRWDEAAVNLAKSRWYNQTP 365
Query: 492 NKNAKLLGKQVALGKKKKKSQEKKAERKAAKTL---------------ILVLLKPITTCS 536
N+ +++ +S +K E AAK+L I+
Sbjct: 366 NRAKRVITTFRTGTWDAYRSTLQK-EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC 424
Query: 537 ECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
P L L + NS +NP YA FR T+ +I+
Sbjct: 425 SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 466
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 270 bits (691), Expect = 2e-84
Identities = 91/458 (19%), Positives = 163/458 (35%), Gaps = 52/458 (11%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILG-YWPL 197
++ V GN LV ++ ++ LQT +NY + SLAVAD + + MP + G W
Sbjct: 48 LILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNF 107
Query: 198 GPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYR---AKRTTKRAACMIVTAW 254
+ CD ++ LD + AS+ NL IS DRY +V P+ Y+ + + +R A MI W
Sbjct: 108 SRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVW 167
Query: 255 GVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYL 314
++ + P +F + C I +N +++ +FY+P V + +Y
Sbjct: 168 VLAFAVSCPLLFGF-----NTTGDPTVCSI----SNPDFVIYSSVVSFYLPFGVTVLVYA 218
Query: 315 RIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDP 374
RIY ++R+++ + D R + + ++ + E
Sbjct: 219 RIYVVLKQRRRKNIFEM--LRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELD 276
Query: 375 DCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRL 434
+T I V + V + K + + V +
Sbjct: 277 KAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR------NAKLKPVYDSLDAVRRAALIN 330
Query: 435 PLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKN 494
+ G + + N+ P+ AK +
Sbjct: 331 MVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNR---------AKRVITT 381
Query: 495 AKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPITT-------------CSEC-IP 540
+ E+KA + + +VL I C C +
Sbjct: 382 FR--------TGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVS 433
Query: 541 NGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
L+ +L Y+NS +NPV Y N FR +++IL+
Sbjct: 434 PELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 234 bits (599), Expect = 3e-71
Identities = 54/311 (17%), Positives = 109/311 (35%), Gaps = 14/311 (4%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
++ +LGN+LV + ++ LQ ++NYF+ SLA AD A+G +++P I +
Sbjct: 41 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAA 98
Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
C + + +S+ +LL I+ DRY ++ PL Y T RA +I W +S
Sbjct: 99 CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 158
Query: 259 ILWPPWIFAWPYIEGERRVP---------YYECYIQFIETNHYITFLTAIAAFYIPVSVM 309
+ + W + C + + +Y+ + A +P+ +M
Sbjct: 159 AIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLM 218
Query: 310 IFLYLRIYKETEKRKKEFSNLQAAGKKDSS---KRSTSRINRKPRPFSRKFIQEWCIAWW 366
+ +YLRI+ ++ + + + K + + R + A
Sbjct: 219 LGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATP 278
Query: 367 HSGREEDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHH 426
++ PD + + + + K +
Sbjct: 279 PKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKY 338
Query: 427 VYTILIRLPLE 437
+ L E
Sbjct: 339 LERARSTLQKE 349
Score = 65.5 bits (159), Expect = 2e-11
Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 15/133 (11%)
Query: 460 KHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERK 519
K +++ A+ + K ++ + E
Sbjct: 292 KDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVH 351
Query: 520 AAKTLILV---------------LLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYAL 564
AAK+L ++ P L L + NS +NP YA
Sbjct: 352 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAY 411
Query: 565 CNDAFRATYIRIL 577
FR T+ +I+
Sbjct: 412 RIREFRQTFRKII 424
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 215 bits (548), Expect = 4e-63
Identities = 83/456 (18%), Positives = 148/456 (32%), Gaps = 58/456 (12%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
+L NI V+++ K YF+ +LA++D G + + + L P
Sbjct: 75 CFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTA-NLLLSGATTYKLTPA 133
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
++A +ASV +LL I+ +RY ++ + + R +I W +S+IL
Sbjct: 134 QWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHN-GSNNFRLFLLISACWVISLIL 192
Query: 261 WPPWIFAWPYIEGERRVPYYECYIQFIETN-HYITFLTAIAAFYIPVSVMIFLYLRIYKE 319
I W I C + HYI F T + F + + ++ LY RIY
Sbjct: 193 GGLPIMGWNCISALS-----SCSTVLPLYHKHYILFCTTV--FTLLLLSIVILYCRIYSL 245
Query: 320 TEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDCDLD 379
R G + + T + P +
Sbjct: 246 VRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGI---------------GHLLTKSPSLNAA 290
Query: 380 DTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLETD 439
+ D + R T+ + KD ++ V IL L+
Sbjct: 291 KSELD---------------KAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPV 335
Query: 440 GSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNK---NAK 496
+ + ++G+ N+ + ++ ++ N+ AK
Sbjct: 336 YDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAK 395
Query: 497 LLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPI-------------TTCSECIPNGL 543
+ G + KT+I+VL I C + L
Sbjct: 396 RVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDIL 455
Query: 544 W--DFFYYLCYINSTINPVCYALCNDAFRATYIRIL 577
+ ++F L +NS NP+ Y L N R +IRI+
Sbjct: 456 FRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM 491
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 207 bits (528), Expect = 3e-60
Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 6/229 (2%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
+ V GN+LV+ + + LQT++NYF+ SLA AD +G +P + + W G
Sbjct: 194 LAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNF 253
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
C+ W ++D L AS+ L +I+ DRYF++T P Y++ T +A +I+ W VS +
Sbjct: 254 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 313
Query: 261 -WPPWIFAWPYIEGERRVPYYECYI--QFIETNHYITFLTAIAAFYIPVSVMIFLYLRIY 317
+ P W + + Y F Y + I +FY+P+ +M+F+Y R++
Sbjct: 314 SFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASS-IVSFYVPLVIMVFVYSRVF 372
Query: 318 KETEKRKKEFSNLQAAGKKDSSKRS--TSRINRKPRPFSRKFIQEWCIA 364
+E +++ ++ + + + R R S+ ++E
Sbjct: 373 QEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKAL 421
Score = 56.1 bits (135), Expect = 2e-08
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 18/117 (15%)
Query: 477 SHISDIRIPLNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTL------------ 524
+ I + +++ ++ S+ E KA KTL
Sbjct: 377 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 436
Query: 525 ---ILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
I+ ++ I I ++ ++ Y+NS NP+ Y + FR + +L
Sbjct: 437 PFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC 490
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 201 bits (512), Expect = 5e-60
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 2/224 (0%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
++ V GN+LV+ + + LQT++N F+ SLA AD +G + +P + G W G
Sbjct: 23 LLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSF 82
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
+C+ W +LD L AS+ L +I+ DRY ++T P Y++ T RA +I T W +S ++
Sbjct: 83 LCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALV 142
Query: 261 -WPPWIFAWPYIEGERRVPYYECYIQ-FIETNHYITFLTAIAAFYIPVSVMIFLYLRIYK 318
+ P + W E + + Y+ TN ++I +FYIP+ +MIF+ LR+Y+
Sbjct: 143 SFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYR 202
Query: 319 ETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWC 362
E +++ ++ + + F W
Sbjct: 203 EAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWL 246
Score = 49.3 bits (118), Expect = 1e-06
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 525 ILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
++ ++ + +P+ L+ F +L Y NS +NP+ Y + FR + R+L
Sbjct: 250 LVNIVNVF--NRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLA 300
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 157 bits (397), Expect = 3e-42
Identities = 78/460 (16%), Positives = 148/460 (32%), Gaps = 55/460 (11%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
+V + GN LVM ++T +N ++F+LA+AD + ++P +V ++G WP G +
Sbjct: 29 VVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADA-LATSTLPFQSVNYLMGTWPFGNI 87
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
+C +++DY S+ L +S DRY +V P+ RT + A + V W +S +
Sbjct: 88 LCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAI 147
Query: 261 W-PPWIFAWPYIEGERRVPYYECYIQFIETNHY----ITFLTAIAAFYIPVSVMIFLYLR 315
P A +C + F Y + I AF +PV ++ Y
Sbjct: 148 GLPVMFMATTKYRQGS----IDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGL 203
Query: 316 IYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWH-SGREEDP 374
+ + + + + I H +
Sbjct: 204 M-------------ILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSL 250
Query: 375 DCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRL 434
+ + IG V + ++ V + P + +R
Sbjct: 251 NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKP---VYDSLDAVRR 307
Query: 435 PLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKN 494
+ + N R+ + AA + + + P AK +
Sbjct: 308 AALINMVFQMGETGVAGFTNSLRMLQQKR--WDEAAVNLAKSRWYN--QTPNRAKRV--- 360
Query: 495 AKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPI----------------TTCSEC 538
++ + R+ + +++V+ I T
Sbjct: 361 -----ITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETT 415
Query: 539 IPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
W F L Y NS +NPV YA ++ F+ +
Sbjct: 416 FQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCI 455
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 133 bits (337), Expect = 1e-34
Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 12/215 (5%)
Query: 138 YFLI--VTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYW 195
Y +I +V+GN++VM K ++T++NYFL +LA A+ ++ A + + Y + W
Sbjct: 39 YTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEW 98
Query: 196 PLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWG 255
G C A AS+ ++ ++FDRY ++ PL + + + +I W
Sbjct: 99 YYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL--QPRLSATATKVVICVIWV 156
Query: 256 VSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNH-----YITFLTAIAAFYIPVSVMI 310
++++L P + Y E C I++ E + + +++P+ V+
Sbjct: 157 LALLLAFPQGY---YSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIG 213
Query: 311 FLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSR 345
+ Y + + + ++ S+KR +
Sbjct: 214 YAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVK 248
Score = 44.7 bits (106), Expect = 5e-05
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 17/99 (17%)
Query: 496 KLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLK------PI-----------TTCSEC 538
L ++ + ++ A+RK K +I+V+ P +
Sbjct: 222 TLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKK 281
Query: 539 IPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRIL 577
++ +L ++ NP+ Y ND FR +
Sbjct: 282 FIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAF 320
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 121 bits (306), Expect = 1e-30
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 50/283 (17%)
Query: 68 TTPSPEF---FSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMV 124
T P F FSN T +V SP+ + Q ++A + L ++ N L
Sbjct: 4 GTEGPNFYVPFSNKTGVVR--SPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLT-- 59
Query: 125 SFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMP 184
+ V V K L+T NY L +LAVAD +
Sbjct: 60 -----------------------LYVTVQHK---KLRTPLNYILLNLAVADLFMVFGGFT 93
Query: 185 LFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTK 244
++ GY+ GP C+ L ++ +L++++ +RY V +P+ +
Sbjct: 94 TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM-SNFRFGEN 152
Query: 245 RAACMIVTAWGVSMILWPPWIFAW-PYI-EGERRVPYYECYIQFIETNH------YITFL 296
A + W +++ P + W YI EG + C I + + ++ ++
Sbjct: 153 HAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCS----CGIDYYTPHEETNNESFVIYM 208
Query: 297 TAIAAFYIPVSVMIFLYLRIY---KETEKRKKEFSNLQAAGKK 336
+ F IP+ V+ F Y ++ KE +++E + Q A K+
Sbjct: 209 F-VVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 250
Score = 32.7 bits (75), Expect = 0.33
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 505 GKKKKKSQEK-KAERKAAKTLILVLLK------PITTCSECIPNGLWDFF--------YY 549
++++S KAE++ + +I++++ P + I F +
Sbjct: 235 AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF 294
Query: 550 LCYINSTINPVCYALCNDAFRATYIRIL 577
++ NPV Y + N FR + L
Sbjct: 295 FAKTSAVYNPVIYIMMNKQFRNCMVTTL 322
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 123 bits (310), Expect = 2e-30
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 138 YFLI--VTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYW 195
Y + +LGN LVM ++T +N ++F+LA+AD + +++P +LG+W
Sbjct: 132 YLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFW 190
Query: 196 PLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWG 255
P G +C T +A+DY S L +S DRY ++ P+ RT+ +A + V W
Sbjct: 191 PFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWA 250
Query: 256 VSMILW-PPWIFAWPYIEGERRVPYYECYIQFIETNHY----ITFLTAIAAFYIPVSVMI 310
++ ++ P I +E E EC ++ Y + +F +PV V+
Sbjct: 251 LASVVGVPVAIMGSAQVEDEE----IECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVIS 306
Query: 311 FLYLRIYK 318
Y + +
Sbjct: 307 VCYSLMIR 314
Score = 37.1 bits (86), Expect = 0.015
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 20/99 (20%)
Query: 496 KLLGKQVALGKKKKKSQEKKAERKAAKTLILV------------LLKPITTCSECIPNGL 543
+L G ++ G ++K + R+ + +++V + +
Sbjct: 315 RLRGVRLLSGSREKD----RNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSET 370
Query: 544 WDFFYYLC----YINSTINPVCYALCNDAFRATYIRILT 578
C Y+NS +NP+ YA ++ F+A + +
Sbjct: 371 AVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCC 409
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 122 bits (308), Expect = 2e-30
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 11/215 (5%)
Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAI-SMPLFTVYTILGYWPL 197
I+ GN +V+ F K+LQT +N F+ +LA +DF + PL T+ L W
Sbjct: 44 CGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIF 103
Query: 198 GPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVS 257
G C + + + S++ + +IS DRY + RP+ K + +RA MI+ W S
Sbjct: 104 GFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS 163
Query: 258 MILWPPWIFAWPYIEGERRVPYYECYIQFIETNH----YITFLTAIAAFYIPVSVMIFLY 313
++ IF W E C +I + I I F+ P+ ++ F Y
Sbjct: 164 VLWAIGPIFGWGAYTLEGV--LCNCSFDYISRDSTTRSNILC-MFILGFFGPILIIFFCY 220
Query: 314 LRIY---KETEKRKKEFSNLQAAGKKDSSKRSTSR 345
I EK + A + ++ +
Sbjct: 221 FNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANA 255
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 482 IRIPLNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLL------KPITTC 535
I ++ K + K++ + +K AE + AK I+++ P
Sbjct: 221 FNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVV 280
Query: 536 SECIPNGLWDFF--------YYLCYINSTINPVCYALCNDAFRATYIRIL 577
+ G ++ ++ NP+ Y++ + FR +
Sbjct: 281 ALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 123 bits (309), Expect = 4e-30
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 9/192 (4%)
Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
+ ++GN LV++ K L+++++ + L+VAD I++P + V + W G
Sbjct: 60 LTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVAN-WYFGNF 117
Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
+C + + +SV L IS DRY ++ + R + V W +++L
Sbjct: 118 LCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLL 177
Query: 261 W-PPWIFAWPYIEGERRVPYYECYIQFIETN--HYITFLTAIAAFYIPVSVMIFLYLRIY 317
P +IFA +R Y C + F + +P V++ Y I
Sbjct: 178 TIPDFIFANVSEADDR----YICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIII 233
Query: 318 KETEKRKKEFSN 329
+
Sbjct: 234 SKLSHSGSNIFE 245
Score = 34.9 bits (80), Expect = 0.079
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 523 TLILVLLKPITTCSECIPNGLWDFFYYLC----YINSTINPVCYALCNDAFRATYIRILT 578
I + C + + + + +NP+ YA F+ + LT
Sbjct: 433 ISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALT 492
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 98/585 (16%), Positives = 157/585 (26%), Gaps = 230/585 (39%)
Query: 79 TTMVTPTSPYF----LDKEPRFTTTQVIIIATFAA---FLSIVTVLGNILVMVSFKIDKT 131
++ PT+ +F L +E +F FAA + ++G L VS ++ +
Sbjct: 18 HVLLVPTASFFIASQL-QE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 132 --------LQTISNYF----L----IVTVLGNILVMVSFKIDKTLQTISNYF-------- 167
L F L I + +L + KT + I NY
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 168 ---------LFSLAVAD-----FAI----GAISMP------LFTVYTIL----------- 192
LF AV + AI G L+ Y +L
Sbjct: 136 PFDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 193 ------------GYWPLGPMVCD--TWL-------ALDYLASNASVLNLL-IISFDRYFS 230
+ G + WL DYL S L+ +I Y
Sbjct: 195 LSELIRTTLDAEKVFTQG---LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 231 VTRPLTYRAKRTTKRAACM------IVTA--------W------GVSMILWPPWI----- 265
+ L + +VTA W I +I
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 266 FAWP-----------YIEGERRVPYY------------ECYIQFIETNHYI--TFLTAIA 300
A+P +E VP + Y+ +TN ++ I+
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN--KTNSHLPAGKQVEIS 369
Query: 301 ------AFYI---PVSVMIF-LYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKP 350
+ P S+ L LR K K A D S+ S RK
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLR------KAK-------APSGLDQSRIPFSE--RKL 414
Query: 351 RPFSRKFIQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATPVSVETPV-TSCVSRCTSLN 409
+ FS +F L PV+ P + + + L
Sbjct: 415 K-FSNRF--------------------L------------PVAS--PFHSHLLVPASDL- 438
Query: 410 VIKDSTKQQTPPT----RIHHVY-TILIRLPLETDGSGDQPSIKMIPDENLPRLGKHP-D 463
+ KD K +I VY T DGS + I + + + + P
Sbjct: 439 INKDLVKNNVSFNAKDIQI-PVYDT--------FDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 464 FPAQNAAALNRRPSHISDI---RIPLNAKMMNKNAKLLGKQVALG 505
+ + +HI D + ++N G +V +
Sbjct: 490 WE----TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 30.0 bits (67), Expect = 2.5
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 29/146 (19%)
Query: 111 LSIVTVLGN--ILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFL 168
SI+ ++ N + + + F +K + NY ++ + + KI K + S +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 169 FS-----LAVADF---AIGAISMPLFTVYTILGYWPLGPMVCDTWLA---L-DY--LASN 214
F L+ F A+ + F L G + D A L +Y LAS
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFED---LKSK--GLIPADATFAGHSLGEYAALASL 1773
Query: 215 ASVLNLLIISFDRYFSVTRPLTYRAK 240
A V+ S + V YR
Sbjct: 1774 ADVM-----SIESLVEVVF---YRGM 1791
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 51.3 bits (123), Expect = 4e-09
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 215 ASVLNLLIISFDRYFSVTRPLTYRAKRTTKR 245
+S+++L IS DRY+S+T+ + Y KRT +R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 31.6 bits (71), Expect = 0.035
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 546 FFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
F LC +NST+NP+ YAL + R + +
Sbjct: 5 FASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.12
Identities = 53/359 (14%), Positives = 93/359 (25%), Gaps = 126/359 (35%)
Query: 281 ECYIQFIETNH---YITFLTAIAAFYIPVSVMIFLYL----RIYKETEK-------RKKE 326
E +F+E Y ++ I S+M +Y+ R+Y + + R +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 327 FSNLQAA-------------GKKDSSK--------RSTSRINRKPRPFSRKFIQEWCIAW 365
+ L+ A G S K S + I W
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK----------IFW 186
Query: 366 WHSGREEDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIH 425
+ P+ L+ Q +I
Sbjct: 187 LNLKNCNSPETVLE------------------------------------MLQKLLYQID 210
Query: 426 HVYTILI----RLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPA--------QNAAALN 473
+T + L SI+ L RL K + QNA A N
Sbjct: 211 PNWTSRSDHSSNIKLRIH------SIQ----AELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 474 R-----------RPSHISDIRIPLNAK--MMNKNAKLLGKQVALGKKKKKSQEKKAE--R 518
R ++D ++ ++ L K + + R
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 519 KAAKTLILVLLKPITTCSECIPNGL--WDFF-YYLCYINSTINPVCY-ALCNDAFRATY 573
+ T ++ +E I +GL WD + + C +TI L +R +
Sbjct: 321 EVLTTNPRR----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Score = 32.9 bits (74), Expect = 0.31
Identities = 68/499 (13%), Positives = 144/499 (28%), Gaps = 146/499 (29%)
Query: 13 NKLRRVIQKFLNTSAINNLPPTTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSP 72
+K ++QKF+ N F+ S + T+ + T ++
Sbjct: 73 SKQEEMVQKFVEEVLRINYK------------FLMSPIKTEQR-QPSMMTRMYI------ 113
Query: 73 EFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILV--MVSFKIDK 130
E L + Y + R + A L + N+L+ ++ K
Sbjct: 114 EQRDRLYNDNQVFAKYNV---SRLQPYLKLRQA-----LLELRPAKNVLIDGVLGS--GK 163
Query: 131 TLQTISNYFLIVTVLGN--ILVMVSFKI-----------DKTLQTISNYFLFSLAVADFA 177
T + + V + + + FKI + L+ + L ++
Sbjct: 164 TW-------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWT 214
Query: 178 IGA-----ISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLN-------LLIISF 225
+ I + + ++ L + L L + NA N +L+ +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTT- 272
Query: 226 DRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQ 285
R+ VT L+ A TT +S+ + E + ++
Sbjct: 273 -RFKQVTDFLS--AATTTH-----------ISLDH-----HSMTLTPDEVK----SLLLK 309
Query: 286 FIETNHYITFLTAIAAFYIPVSV-MIFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTS 344
+++ L P + +I +R T K K ++ +S
Sbjct: 310 YLDCR--PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-----HVNCDKLTTIIESS 362
Query: 345 RINRKPRPFSRKF-------------IQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATP 391
+P + + F + W+ + +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD------------------- 403
Query: 392 VSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLETDGSGDQPSI--KM 449
V V SL V K K+ T I +Y + +++ LE ++ ++ +
Sbjct: 404 --VMVVVNKLHKY--SL-VEKQP-KEST--ISIPSIY-LELKVKLE-----NEYALHRSI 449
Query: 450 IPDENLPRLGKHPDFPAQN 468
+ N+P+ D
Sbjct: 450 VDHYNIPKTFDSDDLIPPY 468
Score = 32.9 bits (74), Expect = 0.33
Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 36/158 (22%)
Query: 372 EDPDC-DLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTI 430
++ DC D+ D P I ++ I + + ++
Sbjct: 31 DNFDCKDVQDMPKSI------------LSK--------EEIDHIIMSKDAVSGTLRLFWT 70
Query: 431 LIRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFP--AQNAAALNRRPSHISDIRIPLNA 488
L+ E ++ +E L ++ R+PS ++ + I
Sbjct: 71 LLSKQEEM--------VQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 489 KMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTLIL 526
++ N N V+ + K ++ E + AK +++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.1
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 316 IYKETEKRKKEFSNLQAAGKKDS-SKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREE 372
I K E+++K LQ + D+ SK K ++K ++E W+ + E
Sbjct: 87 IRKWREEQRKR---LQ---ELDAASKVMEQEWREK----AKKDLEE-----WNQRQSE 129
Score = 30.5 bits (68), Expect = 1.1
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 21/68 (30%)
Query: 315 RIYKETEKRKKEFSNLQAAGKKD---------SSKRSTSRINRKPRPFSRKFIQEWCIAW 365
R+ + K + KKD NR + F Q+
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA---DKAFYQQ----- 148
Query: 366 WHSGREED 373
+ D
Sbjct: 149 ----PDAD 152
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 28.2 bits (63), Expect = 2.9
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 493 KNAKLLGKQVALGKKKKKSQEKKAERKAAK 522
K + + K +K ERK K
Sbjct: 72 PGQKYKETDLLILFKDDYFAKKNEERKQNK 101
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 29.7 bits (67), Expect = 2.9
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 23 LNTSAINNLPPTTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMV 82
+++ ++ V+S+ TW N +++L + ++P+ N T+
Sbjct: 371 EPVASLVPHLALDVGGYSLVDEQVSSAFTNYFTWTINSSSLLLDWSSPTTLKIFNNETIF 430
Query: 83 TPTSPYF-LDKEPRFTTTQVIIIAT 106
L++ V +I
Sbjct: 431 PTEYNVVALEQTNANEEWVVYVIED 455
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 29.0 bits (64), Expect = 3.9
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 450 IPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLLGKQVALGKKKK 509
IP E L K P A+ N + P+ AK K K + GKK
Sbjct: 241 IPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKE--DYTKFNTKDLKTGKKNS 298
Query: 510 K-SQEKKAERKAAKT 523
K + +KA K K+
Sbjct: 299 KMTAAQKALAKVDKS 313
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 27.7 bits (62), Expect = 4.9
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 17/56 (30%)
Query: 71 SPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSF 126
SPEF S L M +++I + S++ N LV+V F
Sbjct: 2 SPEFTSQLVIM-----------------SELIELKQDGDLESLLEQHKNKLVVVDF 40
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 28.2 bits (62), Expect = 5.4
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 291 HYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKE 326
L+A F++ + FL + Y K+ +
Sbjct: 91 DLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEV 126
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 28.0 bits (63), Expect = 8.6
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 24 NTSAI------NNLPPTTTATT--------TVFTHFVASSVDTQTTWGSNYTTVLFNVTT 69
SAI P T A+T T + V G + ++
Sbjct: 277 INSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGF 336
Query: 70 PSPEFFSNLTTMVTPTSPYFL 90
F N + PT P L
Sbjct: 337 ACGNFVINGVSFTPPTVPVLL 357
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 28.0 bits (63), Expect = 9.3
Identities = 22/102 (21%), Positives = 28/102 (27%), Gaps = 24/102 (23%)
Query: 2 TQLDNKPLDNGNKLRRVIQKFLNTSAI------NNLPPTTTATT-------TVFTHFVAS 48
N D G SAI + PTT TT V++
Sbjct: 263 PNFGNVGFDGGI-----------NSAILRYDGAPAVEPTTNQTTSVKPLNEVDLHPLVST 311
Query: 49 SVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFL 90
V + G + FF N + V PT P L
Sbjct: 312 PVPGAPSSGGVDKAINMAFNFNGSNFFINGASFVPPTVPVLL 353
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.417
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,674,006
Number of extensions: 507239
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 50
Length of query: 578
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 479
Effective length of database: 3,937,614
Effective search space: 1886117106
Effective search space used: 1886117106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.3 bits)