RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16378
         (578 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 78.9 bits (193), Expect = 2e-16
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 2/181 (1%)

Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
            +++    N L +      K L+T  NY L +LAVAD  +           ++ GY+  G
Sbjct: 47  LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG 106

Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
           P  C+       L    ++ +L++++ +RY  V +P++            +  T      
Sbjct: 107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALA 166

Query: 259 ILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFY--IPVSVMIFLYLRI 316
              PP +    YI    +      Y    E  +  +F+  +   +  IP+ V+ F Y ++
Sbjct: 167 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

Query: 317 Y 317
            
Sbjct: 227 V 227



 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 511 SQEKKAERKAAKTLILVL--------------LKPITTCSECIPNGLWDFFYYLCYINST 556
           +  +KAE++  + +I+++                  T               +    ++ 
Sbjct: 241 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 300

Query: 557 INPVCYALCNDAFRATYIRIL 577
            NPV Y + N  FR   +  L
Sbjct: 301 YNPVIYIMMNKQFRNCMVTTL 321


>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 69

 Score = 27.9 bits (62), Expect = 0.66
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 485 PLNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLL 529
               ++     ++ GK +A GK + K   K+AE++AA+     LL
Sbjct: 28  NDGDRIFVVEVRVNGKTIATGKGRTK---KEAEKEAARIAYEKLL 69


>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
           10760]}
          Length = 882

 Score = 29.7 bits (66), Expect = 1.1
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 468 NAAALNRRP-SHISDIRIPLNAKMMNKNAKLLGKQVAL-------GKKKKKSQEKKAERK 519
           N   + +   S I    IP N    +   +L  +Q+AL       G+ + +   ++  + 
Sbjct: 1   NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKA 60

Query: 520 -------AAKTLILVLLKPIT 533
                  AAK LI  LL  + 
Sbjct: 61  GEVADNAAAKPLITTLLPKMI 81


>d2aiba1 a.134.1.1 (A:1-98) beta-cinnamomin {Fungus (Phytophthora
           cinnamomi) [TaxId: 4785]}
          Length = 98

 Score = 26.0 bits (57), Expect = 5.8
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 374 PDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSL 408
           PDCDL      +      + V T      S+C SL
Sbjct: 69  PDCDLT-----VPTSGLVLDVYTYANGFSSKCASL 98


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 27.2 bits (60), Expect = 6.9
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 446 SIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMN 492
            +K  P  N+  +    DF +    +L++    +SD  +PL+ + ++
Sbjct: 143 IVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVH 189


>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 117

 Score = 25.8 bits (55), Expect = 8.3
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 347 NRKPRPFSRKFIQEWCIAWWHSGREEDPDCD 377
           N      +     E C+    +G+  D  C 
Sbjct: 76  NWNEGEPNNAGSDEDCVLLLKNGQWNDVPCS 106


>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
           1270]}
          Length = 498

 Score = 26.8 bits (59), Expect = 8.8
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 444 QPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMN 492
             S K +PD  L       DF   N  + ++    +    +P   + MN
Sbjct: 145 IRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMN 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,149,002
Number of extensions: 99146
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 14
Length of query: 578
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 488
Effective length of database: 1,171,896
Effective search space: 571885248
Effective search space used: 571885248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)