BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16387
(676 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 69/90 (76%)
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMR 120
M+LTF QAA+GVNK+ + IMDTC RC+G+ EPGTK Q CHYC G+G+ETI+TGPFVMR
Sbjct: 8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMR 67
Query: 121 STCRYCKGSRNLIKNPCTTCDGKGQFAQRQ 150
STCR C G ++I +PC C G GQ Q++
Sbjct: 68 STCRRCGGRGSIIISPCVVCRGAGQAKQKK 97
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 72 VNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRN 131
V K++ + ++ C CHG +PGT+ Q C C+G+G + G F ++ TC +C+G
Sbjct: 2 VTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGT 61
Query: 132 LIKNPCTTCDGKGQ 145
LIK+PC C G G+
Sbjct: 62 LIKDPCNKCHGHGR 75
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 84 CTRCHGEKCEPGTKAQKCHYCNGTGLETIS--TGPFVMR--STCRYCKGSRNLI--KNPC 137
C C G + G +KC CNG G++ ++ GP + R + C C G+ ++I K+ C
Sbjct: 41 CKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRC 99
Query: 138 TTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKE---------IYITFRVEKSDI 188
+C+GK +R+ + V V G++DGQ + G++ + ++ R KS
Sbjct: 100 KSCNGKKVENERKILEVHVEPGMKDGQRIVFK-GEADQAPDVIPGDVVFIVSERPHKS-- 156
Query: 189 FERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSV 232
F+RDG D+ AEI L A+ GG + + D + + G V
Sbjct: 157 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEV 200
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 141 DGKGQFAQRQTITVPVPAGVEDGQTVRM------NVGKSKKEIYITFRVEKSDIFERDGP 194
DGK + + +T+ V G ++G + +I + + +IF+RDG
Sbjct: 34 DGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 93
Query: 195 DIHSNAEISLSQAVLGGTIRIPGIYDDQTV 224
D+ A ISL +A+ G T+ +P + D +T+
Sbjct: 94 DVIYPARISLREALCGCTVNVPTL-DGRTI 122
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 141 DGKGQFAQRQTITVPVPAGVEDGQTVRM------NVGKSKKEIYITFRVEKSDIFERDGP 194
DGK + + +T+ V G ++G + +I + + +IF+RDG
Sbjct: 36 DGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 95
Query: 195 DIHSNAEISLSQAVLGGTIRIPGIYDDQTV 224
D+ A ISL +A+ G T+ +P + D +T+
Sbjct: 96 DVIYPARISLREALCGCTVNVPTL-DGRTI 124
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 141 DGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSK------KEIYITFRVEKSDIFERDGP 194
DGK + + +T+ V G ++G + + +I + + +IF+RDG
Sbjct: 43 DGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 102
Query: 195 DIHSNAEISLSQAVLGGTIRIPGIYDDQTV 224
D+ A ISL +A+ G T+ +P + D +T+
Sbjct: 103 DVIYPARISLREALCGCTVNVPTL-DGRTI 131
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 150 QTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEI 202
+T+ V +PAGV DGQ +R+ G ++++ + +F+ G ++ +
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 203 SLSQAVLGGTIRIP 216
+ +A LG + +P
Sbjct: 241 APWEAALGAKVTVP 254
>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
pdb|1SM4|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
Length = 296
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ E+GE + + +EL + L+ +N+ V GL G+
Sbjct: 209 FRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWTLLKKDNTFVYMCGLKGM 259
>pdb|2ODF|A Chain A, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|B Chain B, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|C Chain C, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|D Chain D, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|E Chain E, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|F Chain F, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|G Chain G, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|H Chain H, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
Length = 257
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 504 PLYCSQQPGKSFIYDKKITSNETLDDVQNY--TQMLMPLLMETFIEVVADRKQAGSDIVV 561
P S P KS IYD I N LD+ + + T L + E++A+R+ AG +VV
Sbjct: 93 PESPSAMPVKSEIYD--IPGNFDLDEAERFARTSALYVPFHDRVSEIIAERQAAGRKVVV 150
>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant
pdb|4AF7|B Chain B, Pea Fnr C266m Mutant
Length = 308
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V GL G+
Sbjct: 221 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMMGLKGM 271
>pdb|1QG0|A Chain A, Wild-type Pea Fnr
pdb|1QG0|B Chain B, Wild-type Pea Fnr
Length = 308
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V GL G+
Sbjct: 221 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGM 271
>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid
pdb|3MHP|B Chain B, Fnr-Recruitment To The Thylakoid
Length = 296
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V GL G+
Sbjct: 208 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGM 258
>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+
pdb|1QGA|B Chain B, Pea Fnr Y308w Mutant In Complex With Nadp+
Length = 308
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V GL G+
Sbjct: 221 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGM 271
>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
pdb|2XNC|B Chain B, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
Length = 315
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V GL G+
Sbjct: 227 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGM 277
>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFY|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFZ|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadph
pdb|1QFZ|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadph
Length = 308
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V GL G+
Sbjct: 221 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGM 271
>pdb|1YNB|A Chain A, Crystal Structure Of Genomics Apc5600
pdb|1YNB|B Chain B, Crystal Structure Of Genomics Apc5600
pdb|1YNB|C Chain C, Crystal Structure Of Genomics Apc5600
Length = 173
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 314 HNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373
H ++K SG L++ P SV + +F + + + L L + KA +A+F
Sbjct: 15 HEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFI-LALKSGESVEKACKAATAALF 73
Query: 374 SQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSL 408
+ E L +I RY++C + G RE+ L
Sbjct: 74 HDLHEARTMDLHKIARRYVSCD----EEGAREEQL 104
>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FNC|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FND|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
Length = 314
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ E+GE + + EL L+ +N+ V GL G+
Sbjct: 227 FRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGM 277
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 262 YKTILPKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQ 321
YK L K + + F++ V REQ GE + + +EL L+ +N+ V
Sbjct: 208 YKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYM 267
Query: 322 DGLSGL---LEIITLN 334
GL G+ ++ I LN
Sbjct: 268 CGLKGMEKGIDDIMLN 283
>pdb|1YOY|A Chain A, Predicted Coding Region Af1432 From Archaeoglobus Fulgidus
Length = 175
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 314 HNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373
H ++K SG L++ P SV + F + + + L L + KA +A+F
Sbjct: 17 HEVGSLKLTPRSGWLKLGIRLPESVAEHSFRAAIIAFI-LALKSGESVEKACKAATAALF 75
Query: 374 SQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSL 408
+ E L +I RY++C + G RE+ L
Sbjct: 76 HDLHEARTMDLHKIARRYVSCD----EEGAREEQL 106
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 123 CRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPV 156
C+ CKG + ++K C+ C QF + + +++ V
Sbjct: 67 CKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILV 100
>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
pdb|3VO1|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
Length = 314
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 262 YKTILPKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQ 321
YK L K + + F++ V REQ GE + + +EL L+ +N+ V
Sbjct: 212 YKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYKEELWELLKKDNTYVYM 271
Query: 322 DGLSGL 327
GL G+
Sbjct: 272 CGLKGM 277
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of
Swi/snf Chromatin Remodeler
Length = 477
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 352 PLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLII 411
PL++ AT K +L + ++ P+F+IV+ LA A+S + S +I
Sbjct: 103 PLVITXPATNGKPDXAILERYYELAFDKLNVPVFQIVIEPLAIALSX-----GKSSAFVI 157
Query: 412 DVLLEQCPI 420
D+ C +
Sbjct: 158 DIGASGCNV 166
>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant
pdb|4AF6|B Chain B, Pea Fnr L268v Mutant
Length = 308
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGL 327
F++ V REQ+ ++GE + + +EL L+ +N+ V G+ G+
Sbjct: 221 FRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGVKGM 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,759,974
Number of Sequences: 62578
Number of extensions: 601320
Number of successful extensions: 1393
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 36
length of query: 676
length of database: 14,973,337
effective HSP length: 105
effective length of query: 571
effective length of database: 8,402,647
effective search space: 4797911437
effective search space used: 4797911437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)