Query psy16387
Match_columns 676
No_of_seqs 387 out of 2271
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:01:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.3E-59 7.1E-64 496.7 27.8 253 24-291 90-351 (371)
2 PRK14296 chaperone protein Dna 100.0 3E-51 6.4E-56 445.3 28.4 249 24-290 100-361 (372)
3 PRK14286 chaperone protein Dna 100.0 6.2E-51 1.3E-55 443.0 29.9 256 24-291 95-358 (372)
4 PRK14280 chaperone protein Dna 100.0 1.1E-50 2.5E-55 441.7 30.2 256 19-290 87-353 (376)
5 PRK14288 chaperone protein Dna 100.0 1.2E-50 2.6E-55 440.3 28.9 250 24-290 89-345 (369)
6 PRK14285 chaperone protein Dna 100.0 2.3E-50 4.9E-55 437.6 28.7 252 24-291 95-354 (365)
7 PRK14298 chaperone protein Dna 100.0 2.9E-50 6.2E-55 438.3 28.7 249 24-289 91-350 (377)
8 PRK14301 chaperone protein Dna 100.0 6.4E-50 1.4E-54 435.2 30.0 252 24-290 92-350 (373)
9 PRK14278 chaperone protein Dna 100.0 1.1E-49 2.3E-54 434.1 29.9 251 24-289 87-349 (378)
10 PRK14276 chaperone protein Dna 100.0 9.7E-50 2.1E-54 435.0 29.3 251 24-290 95-356 (380)
11 PRK14284 chaperone protein Dna 100.0 9.7E-50 2.1E-54 436.4 29.3 251 26-289 105-365 (391)
12 PRK14279 chaperone protein Dna 100.0 1.6E-49 3.5E-54 434.5 28.9 228 51-289 143-377 (392)
13 PRK14297 chaperone protein Dna 100.0 3.8E-49 8.3E-54 430.5 30.0 254 24-291 95-359 (380)
14 PTZ00037 DnaJ_C chaperone prot 100.0 1.3E-49 2.8E-54 437.1 26.0 250 23-288 101-364 (421)
15 PRK14277 chaperone protein Dna 100.0 6.6E-49 1.4E-53 429.2 30.1 254 24-290 101-365 (386)
16 PRK14287 chaperone protein Dna 100.0 6.1E-49 1.3E-53 427.3 29.2 251 24-290 87-348 (371)
17 PRK14295 chaperone protein Dna 100.0 6.7E-49 1.5E-53 429.2 28.8 229 51-290 136-372 (389)
18 PRK14281 chaperone protein Dna 100.0 8.3E-49 1.8E-53 429.7 29.3 226 53-289 135-371 (397)
19 PRK14294 chaperone protein Dna 100.0 1.2E-48 2.6E-53 424.6 28.9 253 24-290 91-350 (366)
20 PRK10767 chaperone protein Dna 100.0 2.2E-48 4.8E-53 423.5 28.6 248 25-289 93-347 (371)
21 PRK14300 chaperone protein Dna 100.0 3.4E-48 7.4E-53 421.7 29.5 228 52-289 116-351 (372)
22 PRK14291 chaperone protein Dna 100.0 1.1E-47 2.3E-52 419.2 29.9 262 23-293 91-373 (382)
23 PRK14282 chaperone protein Dna 100.0 1.6E-47 3.5E-52 416.2 29.4 250 26-290 102-363 (369)
24 TIGR02349 DnaJ_bact chaperone 100.0 3.6E-47 7.7E-52 411.8 29.2 250 24-287 90-350 (354)
25 PRK14290 chaperone protein Dna 100.0 4.6E-47 1E-51 412.1 30.1 254 23-289 90-355 (365)
26 PRK14293 chaperone protein Dna 100.0 5.8E-47 1.3E-51 412.5 28.5 257 24-290 86-354 (374)
27 PRK14289 chaperone protein Dna 100.0 3.8E-46 8.3E-51 407.8 27.8 229 52-290 125-364 (386)
28 PRK14292 chaperone protein Dna 100.0 1.9E-45 4.2E-50 400.4 28.6 254 23-290 85-348 (371)
29 PRK14283 chaperone protein Dna 100.0 1.6E-45 3.4E-50 401.8 27.2 229 51-289 116-355 (378)
30 KOG2149|consensus 100.0 7.4E-43 1.6E-47 370.5 19.4 324 262-595 17-357 (393)
31 KOG0712|consensus 100.0 6.5E-39 1.4E-43 337.3 19.0 221 51-278 97-331 (337)
32 PRK14299 chaperone protein Dna 100.0 2.5E-31 5.3E-36 280.9 22.5 185 24-288 97-284 (291)
33 PRK10266 curved DNA-binding pr 100.0 1.3E-29 2.7E-34 269.7 23.2 193 24-289 93-292 (306)
34 TIGR03835 termin_org_DnaJ term 99.9 5.6E-27 1.2E-31 264.2 16.4 164 53-276 655-824 (871)
35 PF12333 Ipi1_N: Rix1 complex 99.9 5.5E-26 1.2E-30 204.2 7.8 96 377-474 1-102 (102)
36 KOG0715|consensus 99.7 6.4E-18 1.4E-22 178.1 9.9 170 24-206 118-288 (288)
37 PF01556 CTDII: DnaJ C termina 99.6 1.2E-15 2.7E-20 131.5 5.5 76 195-276 1-78 (81)
38 COG0484 DnaJ DnaJ-class molecu 99.4 6.6E-13 1.4E-17 142.8 8.7 107 96-267 140-256 (371)
39 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 7.6E-13 1.6E-17 109.8 6.7 61 84-144 1-66 (66)
40 KOG0713|consensus 99.3 1.6E-12 3.5E-17 136.6 2.0 214 26-268 100-323 (336)
41 PRK14289 chaperone protein Dna 99.1 1.6E-10 3.5E-15 127.3 9.3 109 96-269 152-272 (386)
42 PRK14279 chaperone protein Dna 99.0 3.4E-10 7.4E-15 124.9 7.8 108 96-268 171-286 (392)
43 PRK14301 chaperone protein Dna 99.0 4.4E-10 9.6E-15 123.2 7.8 109 96-269 142-258 (373)
44 PRK10767 chaperone protein Dna 99.0 5.4E-10 1.2E-14 122.5 7.8 106 96-266 140-253 (371)
45 PRK14287 chaperone protein Dna 98.9 1.2E-09 2.6E-14 119.7 7.5 107 97-268 137-255 (371)
46 PRK14285 chaperone protein Dna 98.8 4.3E-09 9.4E-14 115.2 6.7 108 96-268 144-259 (365)
47 PRK14297 chaperone protein Dna 98.8 5.8E-09 1.3E-13 114.8 7.6 108 96-268 146-265 (380)
48 PRK14290 chaperone protein Dna 98.8 5.7E-09 1.2E-13 114.3 7.0 113 80-200 164-353 (365)
49 PRK14296 chaperone protein Dna 98.8 7.8E-09 1.7E-13 113.4 7.6 106 96-266 147-264 (372)
50 PRK14283 chaperone protein Dna 98.8 8.3E-09 1.8E-13 113.5 7.3 107 97-268 145-263 (378)
51 PRK14286 chaperone protein Dna 98.8 7.9E-09 1.7E-13 113.4 7.0 106 96-266 148-261 (372)
52 PLN03165 chaperone protein dna 98.8 1E-08 2.2E-13 93.2 6.4 59 81-148 41-100 (111)
53 PRK14282 chaperone protein Dna 98.8 8.2E-09 1.8E-13 113.2 6.9 108 96-268 150-269 (369)
54 PRK14280 chaperone protein Dna 98.8 9.7E-09 2.1E-13 112.9 7.1 105 97-266 142-258 (376)
55 PRK14276 chaperone protein Dna 98.8 9.7E-09 2.1E-13 113.0 6.9 108 96-268 144-263 (380)
56 PRK14293 chaperone protein Dna 98.8 1.1E-08 2.5E-13 112.3 7.2 108 96-268 141-260 (374)
57 PRK14295 chaperone protein Dna 98.8 9.9E-09 2.1E-13 113.2 6.7 105 96-265 164-276 (389)
58 PRK14278 chaperone protein Dna 98.8 1.4E-08 3.1E-13 111.6 7.7 106 96-266 137-254 (378)
59 PRK14298 chaperone protein Dna 98.7 9.7E-09 2.1E-13 112.9 6.3 104 97-265 140-255 (377)
60 PRK14277 chaperone protein Dna 98.7 1.4E-08 3.1E-13 112.0 6.4 108 96-268 153-272 (386)
61 TIGR02349 DnaJ_bact chaperone 98.7 2E-08 4.4E-13 109.5 6.9 108 96-268 141-260 (354)
62 PRK14284 chaperone protein Dna 98.7 2.2E-08 4.8E-13 110.6 6.9 105 97-266 157-269 (391)
63 PRK14300 chaperone protein Dna 98.7 2.8E-08 6E-13 109.1 7.4 106 96-266 143-256 (372)
64 PRK14294 chaperone protein Dna 98.7 3E-08 6.6E-13 108.6 7.4 104 97-265 143-254 (366)
65 PRK14291 chaperone protein Dna 98.6 4.7E-08 1E-12 107.7 7.2 105 96-266 154-266 (382)
66 PRK14281 chaperone protein Dna 98.6 4.8E-08 1E-12 108.2 6.4 106 97-268 162-279 (397)
67 PRK14288 chaperone protein Dna 98.6 8.3E-08 1.8E-12 105.3 7.2 105 97-268 139-251 (369)
68 PRK14292 chaperone protein Dna 98.5 1.4E-07 3E-12 103.6 7.9 106 97-268 138-255 (371)
69 PTZ00037 DnaJ_C chaperone prot 98.5 2.2E-07 4.8E-12 103.4 7.1 105 96-265 148-264 (421)
70 PRK14299 chaperone protein Dna 98.3 7.1E-07 1.5E-11 95.0 6.2 69 189-268 125-194 (291)
71 TIGR02642 phage_xxxx uncharact 98.2 1.6E-06 3.6E-11 85.8 4.7 50 119-169 98-149 (186)
72 PRK10266 curved DNA-binding pr 98.1 5E-06 1.1E-10 89.1 6.0 73 191-268 115-201 (306)
73 COG1107 Archaea-specific RecJ- 97.8 9.9E-06 2.1E-10 90.7 3.1 69 82-151 3-85 (715)
74 PF01556 CTDII: DnaJ C termina 97.8 0.0001 2.2E-09 63.6 7.6 39 150-188 27-73 (81)
75 KOG0714|consensus 97.6 0.00052 1.1E-08 71.4 12.6 99 147-249 197-305 (306)
76 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.2 0.0002 4.4E-09 59.4 2.6 42 101-147 1-54 (66)
77 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0024 5.3E-08 57.2 6.7 96 318-416 1-96 (97)
78 KOG0712|consensus 96.8 0.0026 5.7E-08 68.5 6.8 99 83-187 145-324 (337)
79 PF12717 Cnd1: non-SMC mitotic 96.8 0.013 2.8E-07 57.9 11.2 137 316-474 1-138 (178)
80 PF12717 Cnd1: non-SMC mitotic 96.6 0.0076 1.7E-07 59.5 8.0 111 305-419 27-139 (178)
81 KOG2813|consensus 96.2 0.0045 9.8E-08 65.3 4.1 31 122-155 247-277 (406)
82 COG1107 Archaea-specific RecJ- 96.2 0.0042 9.2E-08 70.2 4.1 57 81-144 18-105 (715)
83 TIGR03835 termin_org_DnaJ term 96.1 0.0075 1.6E-07 70.7 5.6 77 186-268 649-739 (871)
84 PF12348 CLASP_N: CLASP N term 96.0 0.074 1.6E-06 53.9 11.8 166 272-443 16-189 (228)
85 KOG2023|consensus 95.8 0.068 1.5E-06 61.7 11.5 163 271-436 143-308 (885)
86 PLN03165 chaperone protein dna 95.8 0.0052 1.1E-07 56.3 2.2 39 83-132 54-98 (111)
87 cd00020 ARM Armadillo/beta-cat 95.6 0.018 3.9E-07 51.2 5.1 106 305-415 9-119 (120)
88 PF12348 CLASP_N: CLASP N term 95.4 0.067 1.5E-06 54.3 8.9 111 304-420 95-210 (228)
89 KOG2813|consensus 94.9 0.015 3.2E-07 61.5 2.5 24 120-146 234-257 (406)
90 TIGR02642 phage_xxxx uncharact 94.4 0.024 5.2E-07 56.6 2.2 29 98-132 99-127 (186)
91 PF01602 Adaptin_N: Adaptin N 94.0 0.22 4.8E-06 56.6 9.4 124 305-437 116-241 (526)
92 PF13513 HEAT_EZ: HEAT-like re 93.9 0.054 1.2E-06 42.6 3.0 53 318-371 2-54 (55)
93 PF12755 Vac14_Fab1_bd: Vacuol 93.6 0.14 3.1E-06 45.9 5.5 67 305-373 29-95 (97)
94 KOG0715|consensus 93.3 0.064 1.4E-06 57.3 3.2 100 96-268 162-269 (288)
95 KOG2956|consensus 92.4 0.65 1.4E-05 52.1 9.5 119 301-420 284-405 (516)
96 PF08167 RIX1: rRNA processing 92.3 1 2.2E-05 44.1 9.9 115 308-424 30-151 (165)
97 KOG2023|consensus 92.0 0.46 1E-05 55.2 7.9 99 304-403 216-315 (885)
98 KOG2171|consensus 91.0 0.98 2.1E-05 55.4 9.7 133 307-440 351-488 (1075)
99 KOG0915|consensus 90.5 0.94 2E-05 57.0 9.0 137 305-441 1041-1186(1702)
100 PF12460 MMS19_C: RNAPII trans 90.1 1.3 2.9E-05 49.5 9.4 128 305-434 273-413 (415)
101 KOG2032|consensus 90.0 1.3 2.7E-05 50.2 8.7 114 305-419 260-374 (533)
102 KOG1242|consensus 88.6 1.1 2.3E-05 51.8 7.2 85 305-390 256-340 (569)
103 PRK13800 putative oxidoreducta 88.5 1.1 2.3E-05 55.3 7.7 90 304-414 622-711 (897)
104 KOG1824|consensus 88.3 1.4 3.1E-05 53.1 8.0 113 305-418 437-551 (1233)
105 KOG1820|consensus 88.0 3.9 8.5E-05 49.6 11.7 158 271-436 261-423 (815)
106 KOG1248|consensus 87.8 1.1 2.4E-05 55.1 7.0 106 277-387 806-911 (1176)
107 KOG2824|consensus 87.8 0.7 1.5E-05 48.6 4.6 32 100-131 242-273 (281)
108 PF01602 Adaptin_N: Adaptin N 87.7 5.5 0.00012 45.3 12.4 128 273-414 52-179 (526)
109 PF10363 DUF2435: Protein of u 87.0 2.8 6E-05 37.3 7.4 77 304-382 4-80 (92)
110 TIGR00630 uvra excinuclease AB 86.3 0.44 9.6E-06 58.6 2.6 20 98-117 736-755 (924)
111 PTZ00429 beta-adaptin; Provisi 86.2 5.6 0.00012 48.1 11.7 104 308-419 145-248 (746)
112 PF12765 Cohesin_HEAT: HEAT re 86.2 0.8 1.7E-05 34.7 3.0 41 326-369 2-42 (42)
113 PF10508 Proteasom_PSMB: Prote 85.8 2 4.4E-05 49.4 7.6 108 307-418 81-188 (503)
114 PF08569 Mo25: Mo25-like; Int 85.7 2.1 4.7E-05 46.8 7.3 107 305-417 166-284 (335)
115 KOG1248|consensus 85.7 10 0.00023 47.1 13.5 125 310-435 704-877 (1176)
116 PRK09687 putative lyase; Provi 85.4 2.6 5.7E-05 44.8 7.7 98 301-414 21-118 (280)
117 PF02985 HEAT: HEAT repeat; I 85.4 1 2.2E-05 31.5 3.0 29 346-374 1-29 (31)
118 PF08064 UME: UME (NUC010) dom 85.3 3.2 7E-05 37.7 7.1 75 314-393 26-102 (107)
119 cd00020 ARM Armadillo/beta-cat 85.1 1.3 2.8E-05 39.1 4.4 71 303-373 49-119 (120)
120 KOG2824|consensus 85.0 0.75 1.6E-05 48.4 3.2 38 99-147 230-275 (281)
121 PF14664 RICTOR_N: Rapamycin-i 84.3 2.4 5.2E-05 47.0 6.9 95 323-419 3-102 (371)
122 PF13646 HEAT_2: HEAT repeats; 83.9 3.3 7.2E-05 34.9 6.3 58 305-373 1-59 (88)
123 PF12830 Nipped-B_C: Sister ch 83.5 12 0.00026 37.4 11.0 68 305-377 10-77 (187)
124 KOG0803|consensus 83.1 2.2 4.7E-05 54.0 6.6 107 305-412 43-149 (1312)
125 cd03031 GRX_GRX_like Glutaredo 82.9 1.1 2.5E-05 43.1 3.3 12 135-146 134-145 (147)
126 PF08767 CRM1_C: CRM1 C termin 81.8 5.5 0.00012 43.2 8.4 136 305-440 69-227 (319)
127 PRK14714 DNA polymerase II lar 81.4 1.7 3.7E-05 54.2 4.7 71 63-148 642-723 (1337)
128 PRK00349 uvrA excinuclease ABC 81.2 0.9 1.9E-05 56.1 2.3 44 98-156 738-781 (943)
129 KOG2956|consensus 81.1 3.5 7.7E-05 46.5 6.6 115 305-422 331-454 (516)
130 KOG0212|consensus 80.4 6.1 0.00013 45.5 8.3 180 252-441 113-305 (675)
131 PF05004 IFRD: Interferon-rela 79.9 8 0.00017 41.8 8.8 113 305-417 45-161 (309)
132 KOG1967|consensus 78.4 9.9 0.00021 46.2 9.5 95 341-435 863-958 (1030)
133 KOG0211|consensus 78.3 11 0.00025 45.4 10.1 149 306-479 440-590 (759)
134 PRK04023 DNA polymerase II lar 78.1 1.9 4.1E-05 52.5 3.6 65 64-145 609-674 (1121)
135 KOG1058|consensus 78.1 13 0.00027 44.4 10.0 124 306-434 320-444 (948)
136 PF10274 ParcG: Parkin co-regu 78.0 6.3 0.00014 39.5 6.7 97 345-441 38-138 (183)
137 KOG1967|consensus 78.0 5.8 0.00013 48.0 7.4 96 312-408 918-1016(1030)
138 PF14961 BROMI: Broad-minded p 77.8 12 0.00027 46.7 10.3 164 305-471 163-363 (1296)
139 PRK00635 excinuclease ABC subu 76.8 1.4 2.9E-05 57.7 2.0 15 135-149 1631-1645(1809)
140 KOG1020|consensus 76.7 11 0.00025 47.9 9.6 109 304-421 817-926 (1692)
141 KOG0414|consensus 76.7 11 0.00023 47.0 9.2 123 253-377 293-431 (1251)
142 smart00802 UME Domain in UVSB 76.2 9.3 0.0002 34.9 6.8 70 318-392 30-101 (107)
143 smart00802 UME Domain in UVSB 75.8 9.1 0.0002 35.0 6.6 80 338-420 4-87 (107)
144 KOG1824|consensus 75.6 14 0.0003 45.2 9.5 136 301-441 172-312 (1233)
145 PF10521 DUF2454: Protein of u 75.4 17 0.00037 38.6 9.7 137 301-437 117-275 (282)
146 KOG2171|consensus 73.6 35 0.00076 42.5 12.5 129 310-439 125-259 (1075)
147 PF12333 Ipi1_N: Rix1 complex 72.9 6.3 0.00014 35.5 4.8 53 335-387 1-53 (102)
148 TIGR00630 uvra excinuclease AB 72.8 1.8 3.8E-05 53.5 1.6 29 121-149 737-774 (924)
149 KOG2025|consensus 72.6 18 0.00038 43.1 9.3 104 304-412 86-189 (892)
150 PF05918 API5: Apoptosis inhib 72.6 9 0.0002 44.6 7.1 108 302-419 58-165 (556)
151 PF12460 MMS19_C: RNAPII trans 72.5 12 0.00025 42.0 7.9 88 305-393 325-412 (415)
152 KOG1242|consensus 72.4 17 0.00037 42.3 9.1 129 306-440 177-308 (569)
153 PTZ00429 beta-adaptin; Provisi 72.3 18 0.00039 43.8 9.8 105 303-419 105-211 (746)
154 PF10274 ParcG: Parkin co-regu 71.8 20 0.00044 35.9 8.5 106 312-419 47-167 (183)
155 PF10508 Proteasom_PSMB: Prote 71.5 12 0.00026 43.2 7.8 101 307-418 7-108 (503)
156 COG0178 UvrA Excinuclease ATPa 70.7 3.1 6.7E-05 50.0 2.9 32 122-155 732-772 (935)
157 PF14500 MMS19_N: Dos2-interac 70.7 14 0.00029 39.1 7.4 126 311-440 7-136 (262)
158 KOG0212|consensus 70.3 21 0.00046 41.3 9.1 129 306-439 253-389 (675)
159 PF04826 Arm_2: Armadillo-like 70.2 17 0.00037 38.2 8.0 131 305-439 14-146 (254)
160 KOG0915|consensus 68.4 11 0.00024 48.1 6.8 116 304-419 995-1113(1702)
161 smart00709 Zpr1 Duplicated dom 68.0 27 0.00059 34.2 8.4 26 211-244 75-100 (160)
162 PF13513 HEAT_EZ: HEAT-like re 67.3 6.2 0.00013 30.7 3.1 52 360-412 2-53 (55)
163 KOG2259|consensus 66.8 18 0.00039 42.7 7.7 106 308-419 203-313 (823)
164 KOG1061|consensus 66.7 20 0.00043 42.9 8.2 109 305-419 123-231 (734)
165 PRK00349 uvrA excinuclease ABC 66.5 3.9 8.5E-05 50.6 2.7 16 135-150 739-754 (943)
166 PF13251 DUF4042: Domain of un 65.9 29 0.00062 34.8 8.2 121 318-438 1-156 (182)
167 COG1198 PriA Primosomal protei 65.7 6 0.00013 47.6 3.9 50 81-143 435-484 (730)
168 PF11640 TAN: Telomere-length 65.3 22 0.00048 34.3 7.2 53 303-355 4-58 (155)
169 PF13251 DUF4042: Domain of un 64.3 44 0.00094 33.5 9.1 111 310-420 47-178 (182)
170 PF10363 DUF2435: Protein of u 64.1 32 0.00068 30.6 7.3 72 346-419 4-75 (92)
171 PF04388 Hamartin: Hamartin pr 63.9 17 0.00036 43.6 7.2 91 306-397 69-163 (668)
172 PF08064 UME: UME (NUC010) dom 63.7 30 0.00064 31.4 7.2 79 339-420 5-87 (107)
173 PRK09687 putative lyase; Provi 63.4 23 0.0005 37.7 7.5 59 305-372 161-219 (280)
174 COG5218 YCG1 Chromosome conden 61.9 21 0.00044 41.7 7.0 69 303-372 91-159 (885)
175 smart00582 RPR domain present 60.9 11 0.00025 34.3 4.1 104 306-419 3-112 (121)
176 cd03031 GRX_GRX_like Glutaredo 60.6 9.7 0.00021 36.8 3.7 59 65-132 86-145 (147)
177 PF12830 Nipped-B_C: Sister ch 59.6 19 0.00042 35.8 5.8 74 344-422 7-80 (187)
178 KOG2933|consensus 59.1 27 0.00058 37.8 6.9 114 304-419 89-202 (334)
179 COG5116 RPN2 26S proteasome re 58.9 23 0.0005 41.2 6.6 112 345-456 551-705 (926)
180 PF11919 DUF3437: Domain of un 58.0 14 0.00031 32.7 4.0 57 316-374 2-58 (90)
181 PF11698 V-ATPase_H_C: V-ATPas 57.9 18 0.0004 33.7 4.8 69 305-373 45-114 (119)
182 KOG0392|consensus 57.5 16 0.00035 45.9 5.5 110 306-419 819-928 (1549)
183 KOG1820|consensus 55.9 81 0.0017 38.7 11.0 113 306-419 256-368 (815)
184 PRK13800 putative oxidoreducta 55.7 25 0.00053 43.6 6.9 54 306-373 717-770 (897)
185 PF00790 VHS: VHS domain; Int 55.5 96 0.0021 29.3 9.5 109 306-419 7-121 (140)
186 COG5098 Chromosome condensatio 55.1 25 0.00054 41.8 6.3 76 302-379 341-420 (1128)
187 PF01603 B56: Protein phosphat 54.4 23 0.00049 39.9 5.9 98 323-421 275-375 (409)
188 KOG1949|consensus 54.1 19 0.00042 42.7 5.2 66 304-372 259-329 (1005)
189 KOG1062|consensus 54.0 59 0.0013 39.3 9.2 120 308-439 317-453 (866)
190 PLN03200 cellulose synthase-in 53.9 26 0.00057 46.8 6.9 140 304-443 610-751 (2102)
191 KOG3613|consensus 52.3 29 0.00062 45.1 6.7 160 301-476 1472-1670(1749)
192 PF03833 PolC_DP2: DNA polymer 52.3 4.7 0.0001 48.5 0.0 67 64-147 637-705 (900)
193 PRK00635 excinuclease ABC subu 52.3 6.4 0.00014 51.7 1.2 35 98-132 1607-1642(1809)
194 PRK14873 primosome assembly pr 52.1 15 0.00031 44.1 4.0 59 70-143 368-431 (665)
195 COG5537 IRR1 Cohesin [Cell div 52.0 35 0.00076 39.9 6.8 105 308-416 280-386 (740)
196 COG0178 UvrA Excinuclease ATPa 52.0 10 0.00022 45.8 2.7 15 135-149 731-745 (935)
197 PF04246 RseC_MucC: Positive r 51.3 23 0.0005 33.3 4.5 21 149-169 41-61 (135)
198 KOG1943|consensus 50.5 57 0.0012 40.6 8.5 116 304-419 342-503 (1133)
199 PF04118 Dopey_N: Dopey, N-ter 50.1 55 0.0012 35.5 7.7 104 305-420 99-202 (307)
200 TIGR00595 priA primosomal prot 49.8 14 0.00031 42.7 3.4 61 70-143 197-262 (505)
201 cd03562 CID CID (CTD-Interacti 49.7 38 0.00083 30.6 5.6 106 307-419 6-111 (114)
202 PRK05580 primosome assembly pr 49.2 22 0.00048 42.7 4.9 61 70-143 365-430 (679)
203 TIGR00310 ZPR1_znf ZPR1 zinc f 47.1 58 0.0013 32.9 6.9 71 100-170 2-100 (192)
204 PRK03564 formate dehydrogenase 46.4 19 0.0004 39.1 3.4 45 98-142 187-234 (309)
205 PF04388 Hamartin: Hamartin pr 46.1 1.2E+02 0.0027 36.4 10.5 99 342-442 67-167 (668)
206 KOG0213|consensus 46.1 73 0.0016 38.4 8.1 107 305-419 365-508 (1172)
207 PF04826 Arm_2: Armadillo-like 45.6 70 0.0015 33.7 7.4 127 305-440 56-188 (254)
208 PF03589 Antiterm: Antitermina 45.0 9 0.0002 34.3 0.6 14 97-110 4-17 (95)
209 PF14500 MMS19_N: Dos2-interac 44.3 39 0.00084 35.7 5.4 71 356-431 182-254 (262)
210 KOG1077|consensus 44.3 1.6E+02 0.0034 35.5 10.4 120 308-437 334-454 (938)
211 PF07092 DUF1356: Protein of u 43.3 12 0.00027 38.9 1.4 9 100-108 40-48 (238)
212 PRK00564 hypA hydrogenase nick 43.2 47 0.001 30.8 5.1 39 70-108 59-98 (117)
213 PF04598 Gasdermin: Gasdermin 42.9 5.7E+02 0.012 29.3 14.8 25 221-246 199-223 (456)
214 PRK12336 translation initiatio 42.1 1.5E+02 0.0033 30.1 9.0 9 81-89 98-106 (201)
215 PF03589 Antiterm: Antitermina 41.4 9.2 0.0002 34.2 0.1 10 83-92 7-16 (95)
216 COG5096 Vesicle coat complex, 41.3 86 0.0019 38.1 8.1 76 310-392 134-209 (757)
217 KOG1293|consensus 41.3 89 0.0019 37.0 7.9 86 304-420 462-548 (678)
218 PF08167 RIX1: rRNA processing 39.5 1.2E+02 0.0027 29.5 7.7 88 305-395 69-163 (165)
219 PF04118 Dopey_N: Dopey, N-ter 38.3 2.3E+02 0.005 30.8 10.2 119 300-419 50-170 (307)
220 PF14353 CpXC: CpXC protein 37.5 38 0.00082 31.5 3.6 12 99-110 2-13 (128)
221 PF13646 HEAT_2: HEAT repeats; 37.3 68 0.0015 26.8 4.9 71 348-438 2-73 (88)
222 PRK03564 formate dehydrogenase 37.0 40 0.00088 36.6 4.2 56 80-143 186-261 (309)
223 cd03572 ENTH_epsin_related ENT 36.9 1.1E+02 0.0025 28.6 6.6 69 305-374 40-119 (122)
224 PF02985 HEAT: HEAT repeat; I 36.8 36 0.00078 23.5 2.5 31 388-418 1-31 (31)
225 PF06371 Drf_GBD: Diaphanous G 36.7 1E+02 0.0023 29.8 6.8 110 301-414 64-185 (187)
226 PRK14559 putative protein seri 36.6 22 0.00047 42.4 2.2 49 82-143 2-50 (645)
227 TIGR00340 zpr1_rel ZPR1-relate 36.4 1.1E+02 0.0023 30.3 6.6 26 211-244 72-98 (163)
228 PF08623 TIP120: TATA-binding 35.9 55 0.0012 32.4 4.6 84 354-441 36-120 (169)
229 PF13453 zf-TFIIB: Transcripti 35.9 40 0.00088 25.1 2.8 10 119-128 18-27 (41)
230 PF03367 zf-ZPR1: ZPR1 zinc-fi 35.8 77 0.0017 31.1 5.6 84 121-244 2-102 (161)
231 TIGR02270 conserved hypothetic 35.7 97 0.0021 35.0 7.1 83 307-412 121-203 (410)
232 cd08050 TAF6 TATA Binding Prot 35.1 2.8E+02 0.0061 30.5 10.4 127 305-435 180-317 (343)
233 TIGR00310 ZPR1_znf ZPR1 zinc f 34.9 2.1E+02 0.0047 28.9 8.7 26 211-244 74-100 (192)
234 PF09723 Zn-ribbon_8: Zinc rib 34.5 38 0.00083 25.5 2.5 28 100-128 7-34 (42)
235 KOG2160|consensus 34.4 1.3E+02 0.0029 33.1 7.6 112 304-419 125-243 (342)
236 KOG0946|consensus 34.1 1.8E+02 0.0039 35.5 8.9 94 347-440 124-221 (970)
237 TIGR00340 zpr1_rel ZPR1-relate 33.7 96 0.0021 30.6 5.8 70 101-170 1-98 (163)
238 KOG0166|consensus 33.0 80 0.0017 36.6 5.9 115 305-419 323-439 (514)
239 KOG1059|consensus 32.8 2.1E+02 0.0046 34.5 9.2 124 301-440 143-269 (877)
240 PF03224 V-ATPase_H_N: V-ATPas 32.1 2.2E+02 0.0047 30.6 8.9 53 389-442 108-161 (312)
241 KOG2160|consensus 31.9 1.8E+02 0.004 32.0 8.1 142 319-476 99-241 (342)
242 KOG1243|consensus 31.3 3.1E+02 0.0067 33.0 10.2 145 302-453 253-431 (690)
243 smart00440 ZnF_C2C2 C2C2 Zinc 31.1 71 0.0015 23.9 3.5 28 100-127 2-35 (40)
244 KOG1243|consensus 30.8 1.3E+02 0.0028 36.0 7.2 73 306-381 333-405 (690)
245 TIGR01562 FdhE formate dehydro 30.7 46 0.001 36.0 3.4 52 83-142 186-260 (305)
246 PF09538 FYDLN_acid: Protein o 30.5 28 0.00062 31.9 1.5 24 81-104 9-32 (108)
247 PF14631 FancD2: Fanconi anaem 30.5 61 0.0013 42.3 4.9 114 306-424 381-510 (1426)
248 COG5098 Chromosome condensatio 29.9 1.7E+02 0.0038 35.2 7.8 112 307-420 303-419 (1128)
249 cd03561 VHS VHS domain family; 29.9 2.4E+02 0.0053 26.3 7.8 93 322-420 19-116 (133)
250 PRK12380 hydrogenase nickel in 29.3 50 0.0011 30.4 2.9 22 69-90 57-79 (113)
251 KOG2149|consensus 28.8 2.9E+02 0.0063 31.0 9.1 91 302-392 98-188 (393)
252 KOG0213|consensus 28.4 2.8E+02 0.006 33.9 9.1 136 305-443 801-941 (1172)
253 PF01096 TFIIS_C: Transcriptio 27.5 83 0.0018 23.4 3.3 28 100-127 2-35 (39)
254 KOG1062|consensus 27.3 1E+02 0.0022 37.5 5.5 75 307-387 146-220 (866)
255 PF05004 IFRD: Interferon-rela 27.2 2.2E+02 0.0047 30.8 7.8 63 358-420 199-261 (309)
256 KOG1059|consensus 27.0 1E+02 0.0022 37.0 5.4 84 304-395 296-383 (877)
257 PF12719 Cnd3: Nuclear condens 26.8 2.6E+02 0.0057 29.7 8.3 93 342-439 23-126 (298)
258 TIGR02270 conserved hypothetic 26.6 1.4E+02 0.003 33.8 6.3 89 305-416 88-176 (410)
259 PF07092 DUF1356: Protein of u 25.3 32 0.0007 35.8 1.0 11 122-132 40-50 (238)
260 TIGR03655 anti_R_Lar restricti 25.1 46 0.001 26.3 1.6 10 100-109 3-12 (53)
261 KOG1240|consensus 25.0 1.6E+02 0.0036 37.4 6.8 88 308-402 427-518 (1431)
262 PF14353 CpXC: CpXC protein 24.5 38 0.00082 31.5 1.2 11 82-92 2-12 (128)
263 COG1198 PriA Primosomal protei 24.3 40 0.00088 40.7 1.7 12 237-248 540-551 (730)
264 PF14225 MOR2-PAG1_C: Cell mor 23.9 3.4E+02 0.0074 28.7 8.4 109 304-420 150-258 (262)
265 PF11864 DUF3384: Domain of un 23.9 4.6E+02 0.01 29.9 10.1 59 315-377 2-61 (464)
266 PF03224 V-ATPase_H_N: V-ATPas 23.8 5.7E+02 0.012 27.3 10.3 131 305-437 60-201 (312)
267 PRK03681 hypA hydrogenase nick 23.8 68 0.0015 29.6 2.7 21 69-89 57-78 (114)
268 KOG1020|consensus 23.7 3.1E+02 0.0066 36.0 8.9 65 308-377 860-924 (1692)
269 PF09862 DUF2089: Protein of u 23.4 51 0.0011 30.5 1.8 19 123-141 1-19 (113)
270 PF03378 CAS_CSE1: CAS/CSE pro 23.2 2.6E+02 0.0056 31.9 7.7 37 407-443 137-175 (435)
271 TIGR02300 FYDLN_acid conserved 23.2 48 0.001 31.3 1.6 26 81-106 9-34 (129)
272 PF08713 DNA_alkylation: DNA a 23.2 1.3E+02 0.0028 29.9 4.8 71 308-386 125-195 (213)
273 KOG2973|consensus 23.1 1.4E+02 0.0029 32.7 5.1 58 305-364 5-62 (353)
274 PF08792 A2L_zn_ribbon: A2L zi 23.0 1E+02 0.0022 22.2 2.9 12 99-110 4-15 (33)
275 PF03564 DUF1759: Protein of u 23.0 3.6E+02 0.0079 25.0 7.7 84 340-426 53-138 (145)
276 COG5221 DOP1 Dopey and related 23.0 92 0.002 39.0 4.2 86 305-390 1380-1475(1618)
277 KOG0168|consensus 23.0 1.4E+02 0.0031 36.6 5.6 106 331-437 542-653 (1051)
278 PF11698 V-ATPase_H_C: V-ATPas 22.8 69 0.0015 30.0 2.6 33 302-334 84-117 (119)
279 KOG1949|consensus 22.8 1.3E+02 0.0028 36.3 5.2 109 305-417 222-332 (1005)
280 PF07191 zinc-ribbons_6: zinc- 22.8 1E+02 0.0022 26.3 3.2 50 83-142 3-58 (70)
281 KOG2011|consensus 22.5 1.1E+02 0.0024 38.3 4.9 58 399-476 299-356 (1048)
282 PF13901 DUF4206: Domain of un 22.4 36 0.00077 34.6 0.6 50 81-141 142-196 (202)
283 PF01155 HypA: Hydrogenase exp 22.4 59 0.0013 29.9 2.0 23 69-91 57-80 (113)
284 PF13719 zinc_ribbon_5: zinc-r 22.3 63 0.0014 23.7 1.8 7 120-126 25-31 (37)
285 COG5215 KAP95 Karyopherin (imp 21.7 4.1E+02 0.0089 31.5 8.7 123 316-442 469-612 (858)
286 COG5101 CRM1 Importin beta-rel 21.6 2.3E+02 0.0049 33.9 6.7 85 356-440 845-941 (1053)
287 COG1326 Uncharacterized archae 21.5 6.5E+02 0.014 25.7 9.1 19 152-170 65-85 (201)
288 COG1413 FOG: HEAT repeat [Ener 21.3 2.5E+02 0.0055 29.9 7.0 94 303-417 43-136 (335)
289 PRK10862 SoxR reducing system 21.2 1.4E+02 0.003 29.1 4.4 21 149-169 48-68 (154)
290 PRK14873 primosome assembly pr 21.1 62 0.0013 38.9 2.4 33 97-142 382-418 (665)
291 KOG0946|consensus 20.9 2.8E+02 0.0061 33.9 7.5 114 305-419 124-244 (970)
292 KOG1114|consensus 20.2 6.2E+02 0.013 31.9 10.1 132 323-479 1094-1256(1304)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-59 Score=496.69 Aligned_cols=253 Identities=30% Similarity=0.579 Sum_probs=234.7
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
||.|||++||||+++ +. ...+++.+|.|+.+.++|||+|||.|+++++.+++...|+.|+|+|+++|+.+.+|++
T Consensus 90 ~~~DIF~~~FgGg~~-~~----~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~t 164 (371)
T COG0484 90 DFGDIFEDFFGGGGG-GR----RRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPT 164 (371)
T ss_pred CHHHHHHHhhcCCCc-cc----CCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCC
Confidence 799999999974211 11 1122456899999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEEee--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCC
Q psy16387 104 CNGTGLETIST--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSK 174 (676)
Q Consensus 104 C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~ 174 (676)
|+|+|++++.+ |.|+++++|+.|+|+|++|+++|+.|+|.|++++.++++|+||||+.+|++||++| |+++
T Consensus 165 C~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~ 244 (371)
T COG0484 165 CNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPA 244 (371)
T ss_pred CCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCC
Confidence 99999887766 88999999999999999999999999999999999999999999999999999996 5678
Q ss_pred ccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccc
Q psy16387 175 KEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKA 254 (676)
Q Consensus 175 GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~ 254 (676)
|||||+|.|++|+.|+|+|+|||++++|++.+|++|++++||||+|+++|+||+ |||+|+++||+|+|||..++..
T Consensus 245 GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~----Gtq~G~~~rl~gkG~p~~~~~~ 320 (371)
T COG0484 245 GDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPA----GTQTGEVFRLRGKGMPKLRSGG 320 (371)
T ss_pred ccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCC----CCccCcEEEEcCCCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999888888
Q ss_pred cccccceecccccCCCCCchhhHHHHHHHHHHHHHHc
Q psy16387 255 RVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKER 291 (676)
Q Consensus 255 rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~~ 291 (676)
+|||+|++.|..|+ ++++.+ +.+|.++....
T Consensus 321 ~GDl~v~v~v~~P~--~ls~~q----~~lL~~~~~~~ 351 (371)
T COG0484 321 RGDLYVRVKVETPK--NLSDEQ----KELLEEFAKSL 351 (371)
T ss_pred cCCEEEEEEEEcCC--CCCHHH----HHHHHHHHHhh
Confidence 89999999999999 899999 88888887654
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-51 Score=445.33 Aligned_cols=249 Identities=24% Similarity=0.503 Sum_probs=222.1
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++||||+ + ++ ..++.+|+|+.+.+.|||+|+|+|+++++.+.+.+.|+.|+|+|++++..+.+|+.
T Consensus 100 ~f~d~f~~~fggg-~-~~------~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~ 171 (372)
T PRK14296 100 SFTNIFSDFFGSN-K-SD------YQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNN 171 (372)
T ss_pred cchhhhhhhcCCC-c-cC------CCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCC
Confidence 5789999999741 1 10 11235799999999999999999999999999999999999999999988999999
Q ss_pred cCceeEEEE--eeCCce--eeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETI--STGPFV--MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~--~~G~~~--~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++. ++|||+ .+++|+.|.|+|++++.+|+.|+|.|++.+.++++|+||+|+++|++|+++| ++
T Consensus 172 C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 251 (372)
T PRK14296 172 CHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNG 251 (372)
T ss_pred CCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCC
Confidence 999997643 458864 5679999999999999999999999999999999999999999999999996 34
Q ss_pred CCccEEEEEEEecCCCcccc-CCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccc-
Q psy16387 173 SKKEIYITFRVEKSDIFERD-GPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVK- 250 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~-G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~- 250 (676)
.+|||||+|+++||+.|+|+ |+|||++++|+|.||++|+++.|+||||.++|+||+ +++||++++|+|+|||..
T Consensus 252 ~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~----~t~~g~~~ri~GkGmP~~~ 327 (372)
T PRK14296 252 VNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPK----SINSNELIIINNKGLYKSI 327 (372)
T ss_pred CCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECC----ccCCCcEEEEcCCCCCcCC
Confidence 68999999999999999995 899999999999999999999999999999999999 999999999999999954
Q ss_pred cccccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 251 KEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 251 ~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
..+.+|||+|+|+|.+|+ ++|+++ +.+|.+.+..
T Consensus 328 ~~~~~GDL~V~~~V~~P~--~Ls~~q----~~~l~~l~~~ 361 (372)
T PRK14296 328 NKDKRGDLIIKVNIVVPK--NLSKKE----KELIEQIYEQ 361 (372)
T ss_pred CCCCcCCEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 345689999999999999 789988 6667666544
No 3
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-51 Score=443.01 Aligned_cols=256 Identities=29% Similarity=0.557 Sum_probs=228.8
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++|||++++ +++ .+....++.+|+|+.+.|+|||||+|+|+++++.+.+.+.|++|+|+|+.++..+.+|+.
T Consensus 95 ~~~d~f~~ffgg~~~-~~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 172 (372)
T PRK14286 95 DFGDIFGDFFGGGRG-GGS-GGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPD 172 (372)
T ss_pred chhhHHHHhhCCCcc-CCC-cccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCC
Confidence 678999999985211 100 001111235799999999999999999999999999999999999999999888999999
Q ss_pred cCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCcc
Q psy16387 104 CNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKE 176 (676)
Q Consensus 104 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GD 176 (676)
|+|+|.++..+|+++++++|+.|.|+|+++..+|+.|+|.|++.+.++++|+||+|+++|++|+|++ ++.+||
T Consensus 173 C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 252 (372)
T PRK14286 173 CGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGD 252 (372)
T ss_pred CcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCce
Confidence 9999998888898889999999999999999999999999999999999999999999999999997 235699
Q ss_pred EEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccccccccc
Q psy16387 177 IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKAR 255 (676)
Q Consensus 177 L~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~r 255 (676)
|||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+||||+ ++|+||+ ++++|++++|+|+|||......+
T Consensus 253 L~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~----g~~~g~~~ri~G~G~P~~~~~~~ 328 (372)
T PRK14286 253 LYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPE----GTESGQVFRLKGHGMPYLGAYGK 328 (372)
T ss_pred EEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCC----ccCCCcEEEECCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999997 8999999 99999999999999997666678
Q ss_pred ccccceecccccCCCCCchhhHHHHHHHHHHHHHHc
Q psy16387 256 VKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKER 291 (676)
Q Consensus 256 GDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~~ 291 (676)
|||+|+|.|.+|+ ++|+++ +.+|.+.+...
T Consensus 329 GDL~V~~~V~~P~--~Ls~~q----k~~l~~l~~~~ 358 (372)
T PRK14286 329 GDQHVIVKIEIPK--KITRRQ----RELIEEFARES 358 (372)
T ss_pred CcEEEEEEEECCC--CCCHHH----HHHHHHHHHhc
Confidence 9999999999999 799999 66777766543
No 4
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-50 Score=441.69 Aligned_cols=256 Identities=29% Similarity=0.553 Sum_probs=226.2
Q ss_pred CCCCCChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcc
Q psy16387 19 FHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKA 98 (676)
Q Consensus 19 f~~g~d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~ 98 (676)
|+++++|+|+|++||||+ +. + .+ .+.+.+|+|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|+.++..+
T Consensus 87 ~~~~~~~~d~f~~~fgg~-~~-~--~~--~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 160 (376)
T PRK14280 87 FGGGFGFEDIFSSFFGGG-GR-R--RD--PNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSK 160 (376)
T ss_pred ccccccchhhHHHHhCCc-cc-c--Cc--ccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCC
Confidence 333457889999999742 10 0 00 112357999999999999999999999999999999999999999998889
Q ss_pred eeccccCceeEEEEe--e--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc----
Q psy16387 99 QKCHYCNGTGLETIS--T--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV---- 170 (676)
Q Consensus 99 ~~C~~C~G~G~~~~~--~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g---- 170 (676)
.+|+.|+|+|.++.. . |.++.+++|+.|+|+|+++..+|+.|+|.|++.+.++++|.||+|+++|++|+++|
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~ 240 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEP 240 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccC
Confidence 999999999986543 2 44667889999999999999999999999999999999999999999999999997
Q ss_pred ---ccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 171 ---GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 171 ---G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
++.+|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+||||.+.|+||+ ++++|++++|+|+||
T Consensus 241 ~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~----g~~~g~~~~i~g~G~ 316 (376)
T PRK14280 241 GVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPA----GTQTGTQFRLKGKGV 316 (376)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECC----CCCCCcEEEEcCCCC
Confidence 2467999999999999999999999999999999999999999999999988999999 999999999999999
Q ss_pred ccccccccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 248 FVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
|...+..+|||+|+|.|.+|+ ++|+.+ +.+|.+.+..
T Consensus 317 p~~~~~~~GDL~v~~~v~~P~--~Ls~~q----~~~l~~l~~~ 353 (376)
T PRK14280 317 PNVRGYGQGDQYVVVRVVTPT--KLTDRQ----KELLREFAEL 353 (376)
T ss_pred CCCCCCCCCCEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 976656789999999999998 799998 6677666643
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-50 Score=440.35 Aligned_cols=250 Identities=22% Similarity=0.444 Sum_probs=223.2
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|.++|+.|||++ +. +....++.+|+|+.+.+.|||+|+|+|+++++.+.+.+.|+.|+|+|+..+ .+.+|+.
T Consensus 89 ~~~~~F~~~fg~g-~~-----~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~ 161 (369)
T PRK14288 89 DLGSFFEDAFGFG-AR-----GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALETCKQ 161 (369)
T ss_pred hHHHHHHhhcCCC-Cc-----ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCcCCCC
Confidence 4667788777631 10 001112357899999999999999999999999999999999999999886 6789999
Q ss_pred cCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc------ccCCccE
Q psy16387 104 CNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV------GKSKKEI 177 (676)
Q Consensus 104 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g------G~~~GDL 177 (676)
|+|+|.++..+|.++++++|+.|.|+|+++..+|+.|+|.|++.+.++++|+||||+++|++|+++| ++.+|||
T Consensus 162 C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL 241 (369)
T PRK14288 162 CNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDL 241 (369)
T ss_pred CCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCE
Confidence 9999998888888888899999999999999999999999999999999999999999999999997 3568999
Q ss_pred EEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCccccccccccc
Q psy16387 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARV 256 (676)
Q Consensus 178 ~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rG 256 (676)
||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||+ ++|+||+ +++||++++|+|+|||......+|
T Consensus 242 ~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~----~~~~g~~~~i~g~G~p~~~~~~~G 317 (369)
T PRK14288 242 YLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPR----NARDRQTFAFRNEGVKHPESSYRG 317 (369)
T ss_pred EEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCC----CCCCCcEEEEcCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999996 8999999 999999999999999976555689
Q ss_pred cccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 257 KLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 257 DL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
||+|+|.|++|+ ++++++ +.+|.+.+..
T Consensus 318 DL~v~~~v~~P~--~ls~~q----~~~l~~~~~~ 345 (369)
T PRK14288 318 SLIVELQVIYPK--SLNKEQ----QELLEKLHAS 345 (369)
T ss_pred CEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 999999999998 799999 6666666543
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-50 Score=437.61 Aligned_cols=252 Identities=25% Similarity=0.477 Sum_probs=226.9
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++||||.++ + .. ...+.+|+|+.+.+.|||||+|+|+++++.+.+.+.|+.|+|+|+.++..+.+|+.
T Consensus 95 ~~~d~f~~~fgg~~~--~--~~--~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 168 (365)
T PRK14285 95 DFGDIFDSFFTGNRG--Q--DK--NRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNM 168 (365)
T ss_pred cHHHHHHHhhcCCcC--C--CC--CcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCC
Confidence 588999999985211 1 00 11235799999999999999999999999999999999999999999988999999
Q ss_pred cCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCcc
Q psy16387 104 CNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKE 176 (676)
Q Consensus 104 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GD 176 (676)
|+|+|+++...|+++++++|+.|.|+|+++.++|+.|+|.|++.+.++++|+||||+++|++|+++| ++.+||
T Consensus 169 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 248 (365)
T PRK14285 169 CNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGD 248 (365)
T ss_pred ccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCC
Confidence 9999998877787888999999999999999999999999999999999999999999999999996 245799
Q ss_pred EEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccccccccc
Q psy16387 177 IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKAR 255 (676)
Q Consensus 177 L~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~r 255 (676)
|||+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||. ++|+||+ ++++|++++|+|+|||......+
T Consensus 249 L~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~----g~~~g~~irl~GkG~p~~~~~~~ 324 (365)
T PRK14285 249 LYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPK----GTENDEQIIIKNEGMPILHTEKF 324 (365)
T ss_pred EEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCC----CcCCCcEEEECCCCccCCCCCCC
Confidence 999999999999999999999999999999999999999999995 8999999 99999999999999997655568
Q ss_pred ccccceecccccCCCCCchhhHHHHHHHHHHHHHHc
Q psy16387 256 VKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKER 291 (676)
Q Consensus 256 GDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~~ 291 (676)
|||+|+|.|++|+ +++..+ +.+|.+.+.+.
T Consensus 325 GDL~V~~~v~~P~--~l~~~q----~~~l~~l~~~~ 354 (365)
T PRK14285 325 GNLILIIKIKTPK--NLNSNA----IKLLENLSKEL 354 (365)
T ss_pred CCEEEEEEEECCC--CCCHHH----HHHHHHHHHHh
Confidence 9999999999998 689888 77777766544
No 7
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-50 Score=438.30 Aligned_cols=249 Identities=29% Similarity=0.537 Sum_probs=222.7
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|.|+|++||||+++ ++ ..++.+|+|+.+.+.|||+|+|+|+++++.+.+.+.|+.|+|+|++++..+.+|+.
T Consensus 91 ~~~d~f~~~Fgg~~~-----~~--~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 163 (377)
T PRK14298 91 GFGDIFEMFFGGGGR-----RG--RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPT 163 (377)
T ss_pred cchhhhHhhhcCCCc-----cC--CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCC
Confidence 478999999985211 11 11245799999999999999999999999999999999999999999998999999
Q ss_pred cCceeEEEEee----CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIST----GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++..+ |.++++++|+.|+|+|+++..+|+.|+|.|++.+.++++|+||||+++|++|+++| ++
T Consensus 164 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~ 243 (377)
T PRK14298 164 CGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGA 243 (377)
T ss_pred CCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCC
Confidence 99999865432 34568899999999999999999999999999999999999999999999999996 34
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
++|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+||||.+.|+||+ ++++|++++|+|+|||..++
T Consensus 244 ~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~----g~~~g~~lri~g~G~p~~~~ 319 (377)
T PRK14298 244 PSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPP----GTQTHSVFRLKDKGMPRLHG 319 (377)
T ss_pred CCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCC----CcccCCEEEECCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999 99999999999999997666
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
..+|||+|+|.|.+|+ +++.++ +.+|.+.+.
T Consensus 320 ~~~GDL~V~~~V~~P~--~ls~~~----~~ll~~l~~ 350 (377)
T PRK14298 320 HGKGDQLVKVIVKTPT--KLTQEQ----KELLREFDE 350 (377)
T ss_pred CCCCCEEEEEEEECCC--CCCHHH----HHHHHHHHh
Confidence 6789999999999999 788888 556665554
No 8
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-50 Score=435.21 Aligned_cols=252 Identities=27% Similarity=0.511 Sum_probs=227.0
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++|||++++ ++ ....++.+|+|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|+..+..+.+|+.
T Consensus 92 ~f~d~f~~~fg~g~~-~~----~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 166 (373)
T PRK14301 92 HFSDIFGDLFGFSGG-GS----RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRH 166 (373)
T ss_pred chHHHHHHHhhccCc-cc----ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCC
Confidence 467899999873111 10 0112345799999999999999999999999999999999999999999888999999
Q ss_pred cCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCcc
Q psy16387 104 CNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKE 176 (676)
Q Consensus 104 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GD 176 (676)
|+|+|.++.++|+++++.+|+.|+|+|+++..+|+.|+|.|++.+.++++|+||+|+++|++|+++| ++++||
T Consensus 167 C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 246 (373)
T PRK14301 167 CGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGD 246 (373)
T ss_pred ccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcC
Confidence 9999998888898889999999999999999999999999999999999999999999999999997 245799
Q ss_pred EEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccc
Q psy16387 177 IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARV 256 (676)
Q Consensus 177 L~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rG 256 (676)
|||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|+||+++|+||+ ++++|++++|+|+|||......+|
T Consensus 247 Liv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~----g~~~g~~~ri~g~G~p~~~~~~~G 322 (373)
T PRK14301 247 LYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPK----GTQSGEVFRLRGKGLPYLGSSQKG 322 (373)
T ss_pred EEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECC----CcCCCcEEEEcCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999986666789
Q ss_pred cccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 257 KLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 257 DL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
||+|+|.|.+|+ ++++.+ +.+|.+.+..
T Consensus 323 DL~I~~~V~~P~--~l~~~q----~~~l~~l~~~ 350 (373)
T PRK14301 323 DLLVEVSVVTPT--KLTKRQ----EELLREFEAL 350 (373)
T ss_pred CEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 999999999998 789988 6667665543
No 9
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-49 Score=434.13 Aligned_cols=251 Identities=25% Similarity=0.511 Sum_probs=222.0
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++||||+++ + ......+.+|+|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|++++..+.+|+.
T Consensus 87 ~~~d~f~~ffgg~g~--~---~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~ 161 (378)
T PRK14278 87 GLGDVFEAFFGGGAA--S---RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDT 161 (378)
T ss_pred chhHHHHHHhCCCCC--C---CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCC
Confidence 478999999985211 1 00111235799999999999999999999999999999999999999999988999999
Q ss_pred cCceeEEEEee----CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIST----GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++..+ |.++.+++|+.|+|+|+++.++|+.|+|.|++.+.++++|+||||+++|++|+|+| ++
T Consensus 162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 241 (378)
T PRK14278 162 CGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGG 241 (378)
T ss_pred ccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCC
Confidence 99999865432 55667889999999999999999999999999999999999999999999999996 24
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecC-CeEEEEecCCCCcccCCCcEEEEcCCcccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIY-DDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKK 251 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tld-G~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~ 251 (676)
++|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+||| +.+.|+||+ ++++|++++|+|+|||...
T Consensus 242 ~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~----g~~~g~~lrl~g~G~p~~~ 317 (378)
T PRK14278 242 PAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPP----GTQPGSVITLRGRGMPHLR 317 (378)
T ss_pred CCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCC----CcCCCcEEEECCCCCCCCC
Confidence 67999999999999999999999999999999999999999999995 558999999 9999999999999999766
Q ss_pred ccccccccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 252 EKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 252 ~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
...+|||+|+|.|.+|+ ++|+.+ +.+|.+.+.
T Consensus 318 ~~~~GDL~V~~~V~~P~--~Ls~~q----k~~l~~~~~ 349 (378)
T PRK14278 318 SGGRGDLHAHVEVVVPT--RLDHED----IELLRELKA 349 (378)
T ss_pred CCCCCCEEEEEEEEcCC--CCCHHH----HHHHHHHHh
Confidence 66789999999999999 789998 666666554
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.7e-50 Score=434.96 Aligned_cols=251 Identities=29% Similarity=0.528 Sum_probs=224.3
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++||||+++ + .. ...+.+|.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|+.++..+.+|+.
T Consensus 95 ~~~d~f~~~fgg~~~--~---~~-~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~ 168 (380)
T PRK14276 95 GFEDIFSSFFGGGGA--R---RN-PNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGK 168 (380)
T ss_pred chhhHHHHHhCcccc--c---cC-cCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCC
Confidence 578999999985211 0 00 11235789999999999999999999999999999999999999999988999999
Q ss_pred cCceeEEEEee----CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIST----GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++..+ |+++.+++|+.|+|+|++++.+|+.|+|.|++.+.++++|+||+|+++|++|+++| ++
T Consensus 169 C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~ 248 (380)
T PRK14276 169 CHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGG 248 (380)
T ss_pred CCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCC
Confidence 99999875442 45667899999999999999999999999999999999999999999999999997 23
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
++|||||+|+++||+.|+|+|+||+++++|+|.||++|++++|+|++|+++|+||+ ++++|++++|+|+|||....
T Consensus 249 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~----g~~~g~~~~i~g~G~p~~~~ 324 (380)
T PRK14276 249 PYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPA----GTQTGKKFRLRGKGAPKLRG 324 (380)
T ss_pred CCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECC----CCCCCCEEEECCCCcCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999 99999999999999997665
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
..+|||+|+|.|.+|+ ++++.+ +.+|.+.+..
T Consensus 325 ~~~GDL~V~~~v~~P~--~l~~~q----~~~l~~~~~~ 356 (380)
T PRK14276 325 GGNGDQHVTVNIVTPT--KLNDAQ----KEALKAFAKA 356 (380)
T ss_pred CCCCCEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 6789999999999999 799999 6677766643
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.7e-50 Score=436.45 Aligned_cols=251 Identities=27% Similarity=0.533 Sum_probs=225.0
Q ss_pred hhHhHhhhCCCC-CCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceecccc
Q psy16387 26 EELFRNIFGQTG-GFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYC 104 (676)
Q Consensus 26 ~diF~~fFGg~~-~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C 104 (676)
.|+|++|||+.+ +|+++ . ...++.+|+|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|+.++..+.+|+.|
T Consensus 105 ~d~f~~~fgg~g~~~~~~-~--~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 181 (391)
T PRK14284 105 GSFFEGLFGGLGEAFGMR-G--GPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRC 181 (391)
T ss_pred ccchhhhccCcccccccc-c--cCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCcc
Confidence 688999997521 11110 0 0112357899999999999999999999999999999999999999999889999999
Q ss_pred CceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccE
Q psy16387 105 NGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEI 177 (676)
Q Consensus 105 ~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL 177 (676)
+|+|.++.++|+++++++|+.|+|+|+++.++|+.|+|.|++.+.++++|+||||+.+|++|+|+| ++++|||
T Consensus 182 ~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL 261 (391)
T PRK14284 182 KGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDL 261 (391)
T ss_pred CCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCE
Confidence 999998888899889999999999999999999999999999999999999999999999999996 3578999
Q ss_pred EEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecC--CeEEEEecCCCCcccCCCcEEEEcCCcccccccccc
Q psy16387 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIY--DDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKAR 255 (676)
Q Consensus 178 ~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tld--G~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~r 255 (676)
||+|+++||+.|+|+|+||+++++|+|.||++|++++|+|++ +.++|+||+ ++++|++++|+|+|||...+..+
T Consensus 262 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~----g~~~g~~~~i~g~G~p~~~~~~~ 337 (391)
T PRK14284 262 YVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPE----GIQSGTILKVRGQGFPNVHGKGR 337 (391)
T ss_pred EEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECC----ccCCCeEEEECCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999998 468999999 99999999999999997665678
Q ss_pred ccccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 256 VKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 256 GDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
|||+|+|.|.+|+ +++.++ +.+|.+.+.
T Consensus 338 GDL~V~~~v~~P~--~l~~~q----~~ll~~l~~ 365 (391)
T PRK14284 338 GDLLVRISVETPQ--NLSEEQ----KELLRQFAA 365 (391)
T ss_pred CcEEEEEEEECCC--CCCHHH----HHHHHHHHh
Confidence 9999999999998 789988 666666654
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-49 Score=434.48 Aligned_cols=228 Identities=28% Similarity=0.543 Sum_probs=214.6
Q ss_pred CCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcc
Q psy16387 51 FGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSR 130 (676)
Q Consensus 51 ~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 130 (676)
+.+|+|+.+.|+|||||+|+|+++++.+.+.+.|+.|+|+|+.++..+.+|+.|+|+|.++..+|++.++++|+.|+|+|
T Consensus 143 ~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 222 (392)
T PRK14279 143 PRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTG 222 (392)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCcee
Confidence 34789999999999999999999999999999999999999999988999999999999888889998999999999999
Q ss_pred eEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeEeeC
Q psy16387 131 NLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEIS 203 (676)
Q Consensus 131 ~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Is 203 (676)
+++..+|+.|+|.|++.+.++++|+||||+++|++|+|+| ++++|||||+|+++||+.|+|+|+||+++++|+
T Consensus 223 ~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Is 302 (392)
T PRK14279 223 SIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVS 302 (392)
T ss_pred EEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEcc
Confidence 9999999999999999999999999999999999999997 245799999999999999999999999999999
Q ss_pred ceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhhHHHHHHH
Q psy16387 204 LSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIV 283 (676)
Q Consensus 204 l~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~ 283 (676)
|.+|++|++++|+|++|+++|+||+ ++++|++++|+|+|||.. ++.+|||+|+|+|.+|+ ++++++ +.+
T Consensus 303 l~eAl~G~~~~v~~ldg~i~v~Ip~----g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~--~Ls~~q----~~~ 371 (392)
T PRK14279 303 FTELALGSTLSVPTLDGPVGVKVPA----GTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPP--NLDGAA----AEA 371 (392)
T ss_pred HHHHcCCceEEEEcCCceEEEEECC----CCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCC--CCCHHH----HHH
Confidence 9999999999999999999999999 999999999999999963 45689999999999999 799999 667
Q ss_pred HHHHHH
Q psy16387 284 IREQLK 289 (676)
Q Consensus 284 l~~q~~ 289 (676)
|.+.+.
T Consensus 372 l~~~~~ 377 (392)
T PRK14279 372 LEAYAE 377 (392)
T ss_pred HHHHHh
Confidence 766664
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-49 Score=430.46 Aligned_cols=254 Identities=28% Similarity=0.540 Sum_probs=225.4
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++||||+ +++++.+ ..++.+|+|+++.|+|||||+|+|+++++.+.+.+.|+.|+|+|..++....+|+.
T Consensus 95 ~~~d~f~~~fgg~--~g~~~~~--~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 170 (380)
T PRK14297 95 GFGDIFDSFFGGG--FGSSSRR--RNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDK 170 (380)
T ss_pred chhHHHHHHhccC--ccccccc--cCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCC
Confidence 5789999999852 2211011 11235789999999999999999999999999999999999999999988999999
Q ss_pred cCceeEEEEe--e--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIS--T--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~--~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++.. . |.++.+++|+.|+|+|+++..+|..|+|.|++.+.++++|+||||+++|++|++++ ++
T Consensus 171 C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~ 250 (380)
T PRK14297 171 CGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGG 250 (380)
T ss_pred ccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCC
Confidence 9999976543 2 55678999999999999999999999999999999999999999999999999996 24
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|++|+++|+||+ ++++|+++||+|+|||...+
T Consensus 251 ~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~----g~~~g~~~ri~g~G~p~~~~ 326 (380)
T PRK14297 251 PTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPA----GTQPGTVFRLKGKGVPRVNS 326 (380)
T ss_pred CCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECC----CcCCCCEEEEcCCCcCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999 99999999999999997666
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHHHHHc
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKER 291 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~~ 291 (676)
..+|||||+|.|.+|+ ++++++ +..|.+.+..+
T Consensus 327 ~~~GDL~v~~~v~~P~--~ls~~q----~~~l~~~~~~~ 359 (380)
T PRK14297 327 TGRGNQYVTVIVDIPK--KLNSKQ----KEALTMFMEAS 359 (380)
T ss_pred CCCCcEEEEEEEEcCC--CCCHHH----HHHHHHHHHhc
Confidence 6789999999999998 799999 66776666543
No 14
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.3e-49 Score=437.10 Aligned_cols=250 Identities=22% Similarity=0.389 Sum_probs=219.4
Q ss_pred CChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceecc
Q psy16387 23 IDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCH 102 (676)
Q Consensus 23 ~d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~ 102 (676)
.++.|+|+.|||++ + . ..+..+|+|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+ ...+|+
T Consensus 101 ~d~~d~f~~~Fggg-~--~------~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~ 170 (421)
T PTZ00037 101 ADASDLFDLIFGGG-R--K------PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVDCK 170 (421)
T ss_pred cchhhhHHHhhccc-c--c------cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCccCC
Confidence 46889999999841 1 0 112357999999999999999999999999999999999999998765 578999
Q ss_pred ccCceeEEE--EeeCCc--eeeEeCCCCCCcceEec--ccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc------
Q psy16387 103 YCNGTGLET--ISTGPF--VMRSTCRYCKGSRNLIK--NPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV------ 170 (676)
Q Consensus 103 ~C~G~G~~~--~~~G~~--~~~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g------ 170 (676)
.|+|+|+++ ++.|+| +++.+|+.|+|+|+++. ++|+.|+|.|++.+.++++|+||||+.+|++|+|+|
T Consensus 171 ~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~ 250 (421)
T PTZ00037 171 LCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKP 250 (421)
T ss_pred CCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCC
Confidence 999999653 345875 46789999999999986 899999999999999999999999999999999997
Q ss_pred ccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccc
Q psy16387 171 GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFV 249 (676)
Q Consensus 171 G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~ 249 (676)
++.||||||+|+++||+.|+|+|+||+++++|+|.|||+|+++.|+||||+ ++|+||+.+ +++||++++|+|+|||.
T Consensus 251 ~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~--vt~pg~~~~I~geGmP~ 328 (421)
T PTZ00037 251 NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGE--VVKPGDIKVINNEGMPT 328 (421)
T ss_pred CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCc--ccCCCcEEEeCCCCccc
Confidence 457899999999999999999999999999999999999999999999997 899999822 28999999999999997
Q ss_pred ccc-cccccccceecccccCCCCCchhhHHHHHHHHHHHH
Q psy16387 250 KKE-KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQL 288 (676)
Q Consensus 250 ~~~-~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~ 288 (676)
.+. ..+|||+|+|+|.+|+..++|+.+ +.+|.+.+
T Consensus 329 ~~~~~~rGDL~V~~~V~~P~~~~Ls~~q----k~ll~~l~ 364 (421)
T PTZ00037 329 YKSPFKKGNLYVTFEVIFPVDRKFTNEE----KEILKSLF 364 (421)
T ss_pred CCCCCCCCCEEEEEEEEcCCCCCCCHHH----HHHHHHhc
Confidence 553 578999999999999555899999 55555544
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.6e-49 Score=429.22 Aligned_cols=254 Identities=28% Similarity=0.539 Sum_probs=223.3
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|.|+|++||++. ||+++.. ...++.+|+|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..++..+.+|+.
T Consensus 101 ~~~d~f~~~F~~~--fgg~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~ 177 (386)
T PRK14277 101 GFGDIFEDIFGDF--FGTGRRR-AETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPV 177 (386)
T ss_pred chhHHHHHhhccc--ccCCCcC-CCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCC
Confidence 4678899999742 3221100 011235799999999999999999999999999999999999999998888999999
Q ss_pred cCceeEEEEe--e--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIS--T--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~--~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++.. . |.++.+++|+.|.|+|+++.++|+.|+|.|++.+.++++|+||+|+++|++|+|++ ++
T Consensus 178 C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 257 (386)
T PRK14277 178 CHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGG 257 (386)
T ss_pred CCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCC
Confidence 9999976543 3 45667789999999999999999999999999999999999999999999999997 23
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
.+|||||+|+++||+.|+|+|+||+++++|++.||++|+++.|+||||++.|+||+ ++++|++++|+|+|||..+.
T Consensus 258 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~----g~~~g~~~ri~g~G~p~~~~ 333 (386)
T PRK14277 258 PNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPE----GTQTGTKFRLRGKGIPHLRG 333 (386)
T ss_pred CCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECC----CCCCCCEEEECCCCCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999 99999999999999997665
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
..+|||+|+|.|.+|+ ++|+++ +.+|.+.+..
T Consensus 334 ~~~GDL~v~~~V~~P~--~Ls~~q----k~~l~~l~~~ 365 (386)
T PRK14277 334 RGRGDQIVKVYIEVPK--KLTEKQ----KELLREFEKL 365 (386)
T ss_pred CCCCCEEEEEEEEeCC--CCCHHH----HHHHHHHHhh
Confidence 6789999999999998 799999 6666665543
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-49 Score=427.30 Aligned_cols=251 Identities=29% Similarity=0.563 Sum_probs=222.9
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|+|+|++||||+++ ... ..++.+|+|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|+.++..+.+|+.
T Consensus 87 ~~~d~f~~~fgg~~~-----~~~-~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 160 (371)
T PRK14287 87 GFSDIFDMFFGGGGG-----RRN-PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSH 160 (371)
T ss_pred chHHHHHhhhccccC-----CCC-CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCC
Confidence 478999999985211 111 11235799999999999999999999999999999999999999999888999999
Q ss_pred cCceeEEEEe--e--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIS--T--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~--~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|+++.. . |.++.+.+|+.|.|+|+++.++|..|+|.|++.+.++++|+||+|+.+|++|+++| ++
T Consensus 161 C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~ 240 (371)
T PRK14287 161 CGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGG 240 (371)
T ss_pred CCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCC
Confidence 9999976543 2 44567889999999999999999999999999999999999999999999999996 23
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
.+|||||+|+++||+.|+|+|+||+++++|+|.||++|++++|+|+||++.|+||+ ++++|++++|+|+|||...+
T Consensus 241 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~----g~~~g~~~ri~g~G~p~~~~ 316 (371)
T PRK14287 241 PPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPA----GTQTGTSFRLRGKGVPNVHG 316 (371)
T ss_pred CCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECC----CccCCcEEEEcCCCccCCCC
Confidence 67999999999999999999999999999999999999999999999999999999 99999999999999997665
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
..+|||+|+|.|.+|+ +++.++ +.+|.+.+..
T Consensus 317 ~~~GDL~V~~~v~~P~--~l~~~q----~~ll~~l~~~ 348 (371)
T PRK14287 317 RGQGDQHVQVRVVTPK--NLTEKE----KELMREFAGM 348 (371)
T ss_pred CCCCCEEEEEEEEcCC--CCCHHH----HHHHHHHHhh
Confidence 6789999999999999 789988 6666666543
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.7e-49 Score=429.18 Aligned_cols=229 Identities=25% Similarity=0.509 Sum_probs=214.4
Q ss_pred CCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcc
Q psy16387 51 FGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSR 130 (676)
Q Consensus 51 ~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 130 (676)
+.+|+|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|+.++..+.+|+.|+|+|.++..+|.|+++++|+.|+|+|
T Consensus 136 ~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 215 (389)
T PRK14295 136 PRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRG 215 (389)
T ss_pred CCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCccee
Confidence 35789999999999999999999999999999999999999999988999999999999888788888999999999999
Q ss_pred eEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeEeeC
Q psy16387 131 NLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEIS 203 (676)
Q Consensus 131 ~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Is 203 (676)
+++..+|+.|+|.|++.+.++++|+||+|+++|++|+|++ ++.+|||||+|+++||+.|+|+|+||+++++|+
T Consensus 216 ~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is 295 (389)
T PRK14295 216 LIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVT 295 (389)
T ss_pred EEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeec
Confidence 9999999999999999999999999999999999999996 245799999999999999999999999999999
Q ss_pred ceeeecCcEEEeeecCC-eEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhhHHHHHH
Q psy16387 204 LSQAVLGGTIRIPGIYD-DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRI 282 (676)
Q Consensus 204 l~eAllG~~i~v~tldG-~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i 282 (676)
|.||++|++++|+|++| .++|+||+ ++++|++++|+|+|||.. ++.+|||+|+|.|.+|+ ++++.+ +.
T Consensus 296 l~eAl~G~~~~I~tldG~~~~v~ip~----g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~--~Ls~~q----k~ 364 (389)
T PRK14295 296 FPEAALGAEVRVPTLGGPPVTVKLPP----GTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPK--DLSGKA----RE 364 (389)
T ss_pred HHHHhCCCeEEEECCCCCEEEEEECC----ccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCC--CCCHHH----HH
Confidence 99999999999999999 58999999 999999999999999964 45689999999999999 799999 76
Q ss_pred HHHHHHHH
Q psy16387 283 VIREQLKE 290 (676)
Q Consensus 283 ~l~~q~~~ 290 (676)
+|.+.+..
T Consensus 365 ~l~~l~~~ 372 (389)
T PRK14295 365 ALEAFREA 372 (389)
T ss_pred HHHHHHhh
Confidence 77666543
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.3e-49 Score=429.69 Aligned_cols=226 Identities=24% Similarity=0.480 Sum_probs=209.0
Q ss_pred CCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEee----CCceeeEeCCCCCC
Q psy16387 53 FSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCKG 128 (676)
Q Consensus 53 ~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G 128 (676)
+|.|+.+.++|||||+|+|+++++.+.+.+.|+.|+|+|+.++ .+.+|+.|+|+|.++..+ |.++.+++|+.|.|
T Consensus 135 ~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 213 (397)
T PRK14281 135 PGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG 213 (397)
T ss_pred CCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence 6889999999999999999999999999999999999999887 688999999999875432 55667889999999
Q ss_pred cceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeEe
Q psy16387 129 SRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAE 201 (676)
Q Consensus 129 ~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~ 201 (676)
+|++++++|+.|+|.|++.+.++++|+||||+++|++|+++| ++.+|||||+|+++||+.|+|+|+||+++++
T Consensus 214 ~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~ 293 (397)
T PRK14281 214 EGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLA 293 (397)
T ss_pred eeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEE
Confidence 999999999999999999999999999999999999999996 3478999999999999999999999999999
Q ss_pred eCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhhHHHHH
Q psy16387 202 ISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKR 281 (676)
Q Consensus 202 Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~ 281 (676)
|+|.||++|+++.|+||||.+.|+||+ ++++|++++|+|+|||......+|||+|+|.|.+|+ ++|+.+ +
T Consensus 294 Isl~eAl~G~~~~i~tldg~i~v~ip~----g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~--~Ls~~q----k 363 (397)
T PRK14281 294 VSYPDLVLGTKVEVPTLDGAVKLTIPA----GTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPK--EVSHQD----K 363 (397)
T ss_pred ecHHHHhcCCeEEeecCCccEEEEeCC----ccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCC--CCCHHH----H
Confidence 999999999999999999998999999 999999999999999976556789999999999999 799999 6
Q ss_pred HHHHHHHH
Q psy16387 282 IVIREQLK 289 (676)
Q Consensus 282 i~l~~q~~ 289 (676)
.+|.+.+.
T Consensus 364 ~~l~~l~~ 371 (397)
T PRK14281 364 ELLKELKK 371 (397)
T ss_pred HHHHHHHh
Confidence 56665553
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-48 Score=424.58 Aligned_cols=253 Identities=29% Similarity=0.570 Sum_probs=226.4
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|.|+|++|||. ++.++ +.+ ...+.+|+|+.+.+.|||||+|.|+++++.+.+.+.|+.|+|+|...+....+|+.
T Consensus 91 ~~~d~f~~~fg~-g~~~~-~~~--~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 166 (366)
T PRK14294 91 SFGDIFEDFFGF-GGGRR-GRS--RTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQ 166 (366)
T ss_pred hhhhhHHHhhcc-CCCcC-Ccc--cCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCC
Confidence 478999999972 11111 000 11235799999999999999999999999999999999999999998888999999
Q ss_pred cCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCcc
Q psy16387 104 CNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKE 176 (676)
Q Consensus 104 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GD 176 (676)
|+|+|.++..+|.++++++|+.|.|+|+.+..+|+.|+|.|++.+.++++|+||||+++|++|+|+| ++.+||
T Consensus 167 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 246 (366)
T PRK14294 167 CGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGD 246 (366)
T ss_pred cCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCc
Confidence 9999998888898889999999999999999999999999999999999999999999999999996 246899
Q ss_pred EEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccc
Q psy16387 177 IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARV 256 (676)
Q Consensus 177 L~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rG 256 (676)
|||+|+++||+.|+|+|+||+++++|++.||++|+++.|+||||++.|+||+ ++++|++++|+|+|||......+|
T Consensus 247 l~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~----g~~~g~~iri~G~G~p~~~~~~~G 322 (366)
T PRK14294 247 LYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPK----GTQPGDIFRFKGKGIPSLRGGGRG 322 (366)
T ss_pred EEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECC----CcCCCCEEEECCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999988999999 999999999999999976556789
Q ss_pred cccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 257 KLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 257 DL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
||+|+|.|.+|+ +++..+ +.++.+.+..
T Consensus 323 DL~V~~~v~~P~--~l~~~q----~~ll~~~~~~ 350 (366)
T PRK14294 323 DQIIEVEVKVPT--RLTKKQ----EELLTEFARL 350 (366)
T ss_pred CEEEEEEEECCC--CCCHHH----HHHHHHHHHh
Confidence 999999999999 788888 6666666543
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-48 Score=423.50 Aligned_cols=248 Identities=30% Similarity=0.599 Sum_probs=222.8
Q ss_pred hhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceecccc
Q psy16387 25 PEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYC 104 (676)
Q Consensus 25 ~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C 104 (676)
|+|+|+.||||++ ++ + ..++.+|+|+.+.|+|||||+|+|+++++.+.+.+.|+.|+|+|...+.....|+.|
T Consensus 93 f~~~f~~~fgg~~--~~---~--~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C 165 (371)
T PRK10767 93 FGDIFGDIFGGGR--GG---G--RQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTC 165 (371)
T ss_pred hhhhhhhhccCCc--cc---c--CCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCC
Confidence 6678888776411 10 0 123458999999999999999999999999999999999999999998888999999
Q ss_pred CceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccE
Q psy16387 105 NGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEI 177 (676)
Q Consensus 105 ~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL 177 (676)
+|+|.++..+|+++++++|+.|.|+|+++..+|+.|+|.|++.+.+.++|+||||+.+|++|++++ ++.+|||
T Consensus 166 ~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL 245 (371)
T PRK10767 166 HGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDL 245 (371)
T ss_pred CCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCE
Confidence 999998877798888999999999999999999999999999999999999999999999999996 2457999
Q ss_pred EEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcccccccccccc
Q psy16387 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVK 257 (676)
Q Consensus 178 ~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGD 257 (676)
||+|+++||+.|+|+|+||+++++|++.+|++|+++.|+||||.++|+||+ ++++|++++|+|+|||...+..+||
T Consensus 246 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~----g~~~g~~~~i~g~G~p~~~~~~~GD 321 (371)
T PRK10767 246 YVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPE----GTQTGKLFRLRGKGVKSVRSGARGD 321 (371)
T ss_pred EEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCC----CCCCCCEEEECCCCcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999988999999 9999999999999999766667899
Q ss_pred ccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 258 LRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 258 L~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
|+|+|.|.+|+ +++..+ +.++.+.+.
T Consensus 322 L~v~~~v~~P~--~l~~~~----~~ll~~l~~ 347 (371)
T PRK10767 322 LYCQVVVETPV--NLTKRQ----KELLEEFEE 347 (371)
T ss_pred EEEEEEEECCC--CCCHHH----HHHHHHHHh
Confidence 99999999998 788888 555555443
No 21
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-48 Score=421.75 Aligned_cols=228 Identities=25% Similarity=0.544 Sum_probs=214.6
Q ss_pred CCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcce
Q psy16387 52 GFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRN 131 (676)
Q Consensus 52 ~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 131 (676)
.+|.|+.+.+.|||+|+|+|+++++.+.+.+.|+.|+|+|+..+..+.+|+.|+|+|.+....|+++++.+|+.|.|+|+
T Consensus 116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 195 (372)
T PRK14300 116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQ 195 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccce
Confidence 47899999999999999999999999999999999999999999899999999999998877898888999999999999
Q ss_pred EecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeEeeCc
Q psy16387 132 LIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISL 204 (676)
Q Consensus 132 ~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl 204 (676)
++.++|+.|+|.|++.+.+.++|+||+|+++|++|+++| ++.+|||||+|+++||+.|+|+|+||+++++|++
T Consensus 196 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl 275 (372)
T PRK14300 196 IIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISF 275 (372)
T ss_pred EeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCH
Confidence 999999999999999999999999999999999999997 2468999999999999999999999999999999
Q ss_pred eeeecCcEEEeeecCC-eEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhhHHHHHHH
Q psy16387 205 SQAVLGGTIRIPGIYD-DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIV 283 (676)
Q Consensus 205 ~eAllG~~i~v~tldG-~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~ 283 (676)
.+|++|+++.|+|+|| .++|+||+ ++++|++++|+|+|+|...+..+|||+|+|.|.+|+ ++++++ +.+
T Consensus 276 ~~Al~G~~~~i~~ldg~~i~v~Ip~----g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~--~ls~~q----k~~ 345 (372)
T PRK14300 276 VNAALGGEIEVPVIEGGKVNLTIPA----GTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPK--NLSKRQ----REL 345 (372)
T ss_pred HHHhCCCEEEEecCCCCEEEEEECC----ccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCC--CCCHHH----HHH
Confidence 9999999999999997 58999999 999999999999999976556789999999999999 799999 777
Q ss_pred HHHHHH
Q psy16387 284 IREQLK 289 (676)
Q Consensus 284 l~~q~~ 289 (676)
|.+.+.
T Consensus 346 l~~l~~ 351 (372)
T PRK14300 346 LEEFKK 351 (372)
T ss_pred HHHHHh
Confidence 776664
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-47 Score=419.17 Aligned_cols=262 Identities=22% Similarity=0.411 Sum_probs=226.4
Q ss_pred CChhhHhHhhhCCCC---CCCCCCC-CCC---CCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCC
Q psy16387 23 IDPEELFRNIFGQTG---GFGGSQE-GGF---SEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPG 95 (676)
Q Consensus 23 ~d~~diF~~fFGg~~---~fgg~~f-~~~---~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g 95 (676)
.+++|+|++||+.++ .||+++. ++. ..++.+|+|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..++
T Consensus 91 ~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 170 (382)
T PRK14291 91 GNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPG 170 (382)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCC
Confidence 467899999864221 1221100 000 012337899999999999999999999999999999999999999999
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-----
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV----- 170 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g----- 170 (676)
....+|+.|+|+|.++...|+++++++|+.|+|+|. +..+|+.|+|.|++.+.++++|+||||+.+|++|+|+|
T Consensus 171 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 249 (382)
T PRK14291 171 SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAG 249 (382)
T ss_pred CCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCC
Confidence 889999999999988777788888999999999994 78999999999999999999999999999999999996
Q ss_pred --ccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 171 --GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 171 --G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
++.+|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|++|. ++|+||+ ++++|++++|+|+||
T Consensus 250 ~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~----g~~~G~~i~i~G~G~ 325 (382)
T PRK14291 250 RFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPP----GTKEGDKIRVPGKGM 325 (382)
T ss_pred CCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECC----ccCCCCEEEECCCCC
Confidence 357899999999999999999999999999999999999999999999996 8999999 999999999999999
Q ss_pred ccccccccccccceecccccCCCCCc------hhhHHHHHHHHHHHHHHcCC
Q psy16387 248 FVKKEKARVKLRKSYKTILPKGQNVT------NTEFKVKRIVIREQLKERGE 293 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~Pk~~nlT------dt~fksk~i~l~~q~~~~~~ 293 (676)
|......+|||+|+|.|.+|+...++ .++ +.++.+......+
T Consensus 326 p~~~~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~----~~~~~~l~~~~~~ 373 (382)
T PRK14291 326 PRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKA----KKLLKELDKLLPE 373 (382)
T ss_pred CCCCCCCCCCEEEEEEEEeCCCcCcCccccCCHHH----HHHHHHHHhhcCC
Confidence 97665678999999999999865688 666 6666665544433
No 23
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-47 Score=416.21 Aligned_cols=250 Identities=26% Similarity=0.461 Sum_probs=220.1
Q ss_pred hhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccC
Q psy16387 26 EELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCN 105 (676)
Q Consensus 26 ~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~ 105 (676)
.|+|++||||.++ + .. ...++.+|+|+.+.++|||+|+|+|+++++.+.+.+.|+.|+|+|+.++..+.+|+.|+
T Consensus 102 ~d~f~~~fgg~~~--~-~~--~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 176 (369)
T PRK14282 102 RDIFDIFFGERRT--Q-EE--QREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCH 176 (369)
T ss_pred chhhhHhhcccCC--c-cc--ccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCC
Confidence 3889999975211 0 00 01123579999999999999999999999999999999999999999988899999999
Q ss_pred ceeEEEEe--e--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCC
Q psy16387 106 GTGLETIS--T--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSK 174 (676)
Q Consensus 106 G~G~~~~~--~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~ 174 (676)
|+|.+... . |+++++++|+.|+|+|++++++|+.|+|.|++.+.++++|+||||+.+|++|+|+| ++++
T Consensus 177 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~ 256 (369)
T PRK14282 177 GTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPY 256 (369)
T ss_pred CcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCC
Confidence 99976443 3 55678899999999999999999999999999999999999999999999999997 3467
Q ss_pred ccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccccccc
Q psy16387 175 KEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEK 253 (676)
Q Consensus 175 GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~ 253 (676)
|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|+||+ ++|+||+ ++++|++++|+|+|||.....
T Consensus 257 GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~----g~~~g~~iri~GkG~p~~~~~ 332 (369)
T PRK14282 257 GDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPP----GTQPETVFRLKGKGLPNMRYG 332 (369)
T ss_pred CCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCC----CcCCCCEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999996 8999999 999999999999999975555
Q ss_pred ccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 254 ARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 254 ~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
.+|||+|+|.|.+|+ .++.++ +.++.+.+..
T Consensus 333 ~~GDL~V~~~v~~P~--~l~~~~----~~ll~~l~~~ 363 (369)
T PRK14282 333 RRGDLIVNVHVEIPK--RLSREE----RKLLKELAKK 363 (369)
T ss_pred CCCCEEEEEEEECCC--CCCHHH----HHHHHHHHHh
Confidence 689999999999998 688777 5566655543
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=3.6e-47 Score=411.79 Aligned_cols=250 Identities=33% Similarity=0.594 Sum_probs=220.7
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|.|+|++|||++ ++++ ... ...+.+|+|+.+.+.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.
T Consensus 90 ~~~~~f~~~fg~~--~g~~-~~~-~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 165 (354)
T TIGR02349 90 DFGDIFGDFFGGG--GGSG-RRR-RSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPT 165 (354)
T ss_pred chhhhHHHHhccC--cccC-ccc-cCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCC
Confidence 5789999999852 1111 100 11345789999999999999999999999999999999999999998888999999
Q ss_pred cCceeEEEEe--eCC--ceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIS--TGP--FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~--~G~--~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++.. +|| ++.+++|+.|.|+|++++.+|+.|+|.|++.+.++++|+||+|+++|++|+|+| ++
T Consensus 166 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 245 (354)
T TIGR02349 166 CGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGG 245 (354)
T ss_pred CCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCC
Confidence 9999987544 344 567889999999999999999999999999999999999999999999999997 23
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||.++|.||+ ++++|++++|+|+|||...+
T Consensus 246 ~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~----g~~~g~~~~i~g~G~p~~~~ 321 (354)
T TIGR02349 246 PNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPA----GTQSGTVFRLKGKGVPRLRG 321 (354)
T ss_pred CCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECC----cccCCcEEEECCCCcCCCCC
Confidence 57999999999999999999999999999999999999999999999988999999 99999999999999997655
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHH
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQ 287 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q 287 (676)
..+|||+|+|.|.+|+ ++++++ +.+|.+.
T Consensus 322 ~~~GDL~i~~~v~~P~--~l~~~~----~~~l~~~ 350 (354)
T TIGR02349 322 NGRGDLLVTVKVETPK--NLSKEQ----KELLEEL 350 (354)
T ss_pred CCCCCEEEEEEEECCC--CCCHHH----HHHHHHH
Confidence 6789999999999998 688888 4444443
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-47 Score=412.07 Aligned_cols=254 Identities=24% Similarity=0.448 Sum_probs=220.9
Q ss_pred CChhhHhHhhhCCCCCCCCCCCCC--C-CCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcce
Q psy16387 23 IDPEELFRNIFGQTGGFGGSQEGG--F-SEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQ 99 (676)
Q Consensus 23 ~d~~diF~~fFGg~~~fgg~~f~~--~-~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~ 99 (676)
.+++|+|++|||+. +++..+++ . .....++.|+.+.|.|||+|+|.|+++++.+.+.+.|+.|+|+|..++ ...
T Consensus 90 ~~~~d~f~~~fg~~--~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~-~~~ 166 (365)
T PRK14290 90 SDINDIFNQIFGGN--FGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLI 166 (365)
T ss_pred cchhHHHHHHhcCc--cccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCC-CCc
Confidence 36889999999852 11111111 0 111124889999999999999999999999999999999999999876 678
Q ss_pred eccccCceeEEEEee--CCce--eeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-----
Q psy16387 100 KCHYCNGTGLETIST--GPFV--MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV----- 170 (676)
Q Consensus 100 ~C~~C~G~G~~~~~~--G~~~--~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g----- 170 (676)
+|+.|+|+|.++..+ |++. .+++|+.|.|+|+++..+|+.|+|.|++.+.++++|+||||+.+|++|+|+|
T Consensus 167 ~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 246 (365)
T PRK14290 167 TCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSY 246 (365)
T ss_pred cCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCCC
Confidence 999999999876654 4442 4689999999999999999999999999999999999999999999999997
Q ss_pred ccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccc
Q psy16387 171 GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVK 250 (676)
Q Consensus 171 G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~ 250 (676)
++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|++|.++|+||+ ++++|++++|+|+|+|..
T Consensus 247 ~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~----g~~~g~~iri~g~G~p~~ 322 (365)
T PRK14290 247 GGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPE----GTQPGEVLKIKGAGMPHL 322 (365)
T ss_pred CCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECC----ccCCCcEEEECCCCCCCC
Confidence 4579999999999999999999999999999999999999999999999989999999 999999999999999976
Q ss_pred cccccccccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 251 KEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 251 ~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
....+|||+|+|.|.+|+ +++..+ +.++.+.+.
T Consensus 323 ~~~~~GDL~V~~~V~~P~--~l~~~~----~~ll~~~~~ 355 (365)
T PRK14290 323 NGHGSGDLLVRINVEVPK--RLTSKQ----KELIREFFD 355 (365)
T ss_pred CCCCCCCEEEEEEEECCC--CCCHHH----HHHHHHHHH
Confidence 555689999999999998 788888 666666553
No 26
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-47 Score=412.52 Aligned_cols=257 Identities=26% Similarity=0.481 Sum_probs=222.5
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
+|.|+|++|||+++++++.+++....++.+|.|+.+.+.|||||+|+|+++++.+.+.+.|+.|+|+|..++....+|+.
T Consensus 86 ~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 165 (374)
T PRK14293 86 GFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCST 165 (374)
T ss_pred chHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCC
Confidence 46799999997522111100000011235789999999999999999999999999999999999999999888999999
Q ss_pred cCceeEEEEe--e--CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------cc
Q psy16387 104 CNGTGLETIS--T--GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GK 172 (676)
Q Consensus 104 C~G~G~~~~~--~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~ 172 (676)
|+|+|.++.. . |.++.+.+|+.|.|.|++++++|+.|.|.|++.+.+.++|+||||+++|++|++++ ++
T Consensus 166 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~ 245 (374)
T PRK14293 166 CGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGG 245 (374)
T ss_pred CCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCC
Confidence 9999986543 3 44667899999999999999999999999999999999999999999999999997 23
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
.+|||||+|++++|+.|+|+|+||+++++|++.||++|+++.|+|+||.++|+||+ ++++|++++|+|+|||....
T Consensus 246 ~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~----~~~~g~~~ri~g~G~p~~~~ 321 (374)
T PRK14293 246 PPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPA----GTQPNTVLTLENKGVPRLGN 321 (374)
T ss_pred CCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCC----CCCCCCEEEECCCCCCCCCC
Confidence 57999999999999999999999999999999999999999999999988999999 99999999999999997544
Q ss_pred -cccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 253 -KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 253 -~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
+.+|||+|+|.|.+|+ +++..+ +.++.+.++.
T Consensus 322 ~~~~GDL~v~~~v~~P~--~l~~~~----~~l~~~l~~~ 354 (374)
T PRK14293 322 PVARGDHLITVKVKIPT--RISDEE----RELLEKLAKI 354 (374)
T ss_pred CCCcCCEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 4689999999999998 799988 6666665543
No 27
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-46 Score=407.79 Aligned_cols=229 Identities=24% Similarity=0.428 Sum_probs=212.7
Q ss_pred CCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEee----CCceeeEeCCCCC
Q psy16387 52 GFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCK 127 (676)
Q Consensus 52 ~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~ 127 (676)
.+|.|+++.+.|||||+|+|+++++.+.+.+.|+.|+|+|+..+.....|+.|+|+|.++..+ |.++.+.+|+.|.
T Consensus 125 ~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 204 (386)
T PRK14289 125 FRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCN 204 (386)
T ss_pred CCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCC
Confidence 478999999999999999999999999999999999999999888899999999999875543 5667899999999
Q ss_pred CcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeE
Q psy16387 128 GSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNA 200 (676)
Q Consensus 128 G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~ 200 (676)
|+|+++..+|+.|+|.|++.+.++++|+||+|+++|++|++++ ++.+|||||+|++++|+.|+|+|+||++++
T Consensus 205 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~ 284 (386)
T PRK14289 205 GEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNL 284 (386)
T ss_pred ccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEe
Confidence 9999999999999999999999999999999999999999996 345799999999999999999999999999
Q ss_pred eeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhhHHHH
Q psy16387 201 EISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVK 280 (676)
Q Consensus 201 ~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fksk 280 (676)
.|+|.+|++|+++.|+|++|.++|.||+ ++++|+++||+|+|+|......+|||+|+|.|++|+ ++|+++
T Consensus 285 ~Isl~eAl~G~~~~i~~ldg~i~v~ip~----g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~--~l~~~q---- 354 (386)
T PRK14289 285 LLSVPTAALGGAVEVPTIDGKAKVKIEA----GTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPE--TLSKEE---- 354 (386)
T ss_pred ccCHHHHhCCCeEEeecCCceEEEEECC----ccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCC--CCCHHH----
Confidence 9999999999999999999999999999 999999999999999976556789999999999998 799999
Q ss_pred HHHHHHHHHH
Q psy16387 281 RIVIREQLKE 290 (676)
Q Consensus 281 ~i~l~~q~~~ 290 (676)
+.+|.+.+..
T Consensus 355 ~~~l~~l~~~ 364 (386)
T PRK14289 355 KQTLEKMENS 364 (386)
T ss_pred HHHHHHHHhh
Confidence 7677666653
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-45 Score=400.41 Aligned_cols=254 Identities=25% Similarity=0.546 Sum_probs=223.0
Q ss_pred CChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCC-cceec
Q psy16387 23 IDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGT-KAQKC 101 (676)
Q Consensus 23 ~d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~-~~~~C 101 (676)
+|++|+|++|||+. ++++ +++. .++.+|.|+.+.+.|||+|+|+|+++++.+.+...|+.|+|+|+..+. ...+|
T Consensus 85 ~d~~d~f~~~fg~~-~~~~-~~~~--~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C 160 (371)
T PRK14292 85 FDPMDIFEQLFGGA-GFGG-GRGR--RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTC 160 (371)
T ss_pred CChHHHHHHhhCCC-CcCC-CCCc--ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccC
Confidence 57889999999852 2211 1111 123578999999999999999999999999999999999999998764 47899
Q ss_pred cccCceeEEEEee----CCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-cc----
Q psy16387 102 HYCNGTGLETIST----GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-GK---- 172 (676)
Q Consensus 102 ~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-G~---- 172 (676)
+.|+|+|.++.++ |+++++++|+.|.|.|+.+..+|+.|.|.|++.+.+.++|.||+|+.+|++|+|+| |.
T Consensus 161 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~ 240 (371)
T PRK14292 161 PTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPG 240 (371)
T ss_pred CCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCC
Confidence 9999999765432 66667889999999999999999999999999999999999999999999999997 21
Q ss_pred CCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccc
Q psy16387 173 SKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKE 252 (676)
Q Consensus 173 ~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~ 252 (676)
..|||||+|++++|+.|+|+|+||+++++|++.||++|+++.|+||+|...|+||+ ++++|++++|+|+|||...+
T Consensus 241 ~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~----g~~~g~~~~i~g~G~p~~~~ 316 (371)
T PRK14292 241 GNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKP----GTQHGDLHRLRGQGMPRLQG 316 (371)
T ss_pred CCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCC----CcCCCcEEEECCCCCCCCCC
Confidence 23999999999999999999999999999999999999999999999988899999 99999999999999997666
Q ss_pred cccccccceecccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 253 KARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
..+|||+|+|.|.+|+ ++++++ +.+|.+.+..
T Consensus 317 ~~~GDL~V~~~v~~P~--~l~~~q----~~ll~~~~~~ 348 (371)
T PRK14292 317 AGTGDLIVEYEIAVPK--QLSPEA----REALEAYARA 348 (371)
T ss_pred CCCCCEEEEEEEECCC--CCCHHH----HHHHHHHHhh
Confidence 6789999999999998 799999 7677666643
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-45 Score=401.82 Aligned_cols=229 Identities=28% Similarity=0.547 Sum_probs=210.9
Q ss_pred CCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEe--e--CCceeeEeCCCC
Q psy16387 51 FGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIS--T--GPFVMRSTCRYC 126 (676)
Q Consensus 51 ~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~--G~~~~~~~C~~C 126 (676)
+.+|.|+.++++|||+|+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|.+... . |+++.+.+|+.|
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 357899999999999999999999999999999999999999998889999999999986543 2 556778899999
Q ss_pred CCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeee
Q psy16387 127 KGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSN 199 (676)
Q Consensus 127 ~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~ 199 (676)
.|+|+.+.++|..|+|.|++.+.+.++|+||+|+++|++++++| ++.+|||||+|++++|+.|+|+|+||+++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~ 275 (378)
T PRK14283 196 QGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYE 275 (378)
T ss_pred CccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEE
Confidence 99999999999999999999999999999999999999999997 24679999999999999999999999999
Q ss_pred EeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhhHHH
Q psy16387 200 AEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKV 279 (676)
Q Consensus 200 ~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~fks 279 (676)
+.|++.+|++|+++.|+|+||.+.|.||+ ++++|+++||+|+|||......+|||+|+|.|.+|+ ++|+++
T Consensus 276 ~~Isl~eAl~G~~~~i~tldG~i~v~ip~----g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~--~l~~~q--- 346 (378)
T PRK14283 276 KPISFVQAALGDTVDVPTIDGPVELKIPA----GTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPK--KLSPKQ--- 346 (378)
T ss_pred EecCHHHHhcCCeEEEEcCCceEEEEeCC----CCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC--CCCHHH---
Confidence 99999999999999999999988999999 999999999999999976556789999999999998 689998
Q ss_pred HHHHHHHHHH
Q psy16387 280 KRIVIREQLK 289 (676)
Q Consensus 280 k~i~l~~q~~ 289 (676)
+.+|.+.+.
T Consensus 347 -~~ll~~~~~ 355 (378)
T PRK14283 347 -KELLREFAS 355 (378)
T ss_pred -HHHHHHHHh
Confidence 556665553
No 30
>KOG2149|consensus
Probab=100.00 E-value=7.4e-43 Score=370.48 Aligned_cols=324 Identities=26% Similarity=0.415 Sum_probs=245.7
Q ss_pred ecccccCCCCCchhhHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhh
Q psy16387 262 YKTILPKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKS 341 (676)
Q Consensus 262 ~~V~~Pk~~nlTdt~fksk~i~l~~q~~~~~~~~~~~~~r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~ 341 (676)
+.-++||+.|.|+++||+|+|.+++|......+..+++.+++|+||+|++++|||+++|+|||.||++++.+||. .+.+
T Consensus 17 vg~k~~k~~nat~t~~kskaiil~eQ~~~~e~~~~~t~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~-~l~~ 95 (393)
T KOG2149|consen 17 VGKKLPKASNATNTEFKTKAIILPEQSVLAEDSGLATSKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-ELQS 95 (393)
T ss_pred hcccCCccccccchhhhhhhhccHHHHHHHhccCCccccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-HHHH
Confidence 456799999999999999999999995544444455678999999999999999999999999999999999995 6789
Q ss_pred cHHHHHHhhhcccccCChHHHHHHHHHHHH-HhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 342 HFSSILDSVSPLMLDISATTRKAAVKLLSA-MFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 342 ~~~~il~~~~~li~D~~~~VR~~l~~ll~~-l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
|++.++++++|+|+|.|..||+++++|++. +.+.++.. ++||+.++++|++||||||.++||+||++||++|+++||+
T Consensus 96 ~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 96 HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 999999999999999999999999999987 55555544 9999999999999999999999999999999999999987
Q ss_pred c-chhhhhhhhHHHHHhccccccccc-ceeeEEecCCCcchhHHHHHHHHHHHHHHHHHHhhhcc----cCCCCCCcceE
Q psy16387 421 L-TANYRSLLPHFLDMISSQTRSHEQ-ARQLTVDLDSRTTTTVFRIKVLTRLRSMLLAIVHLFKT----KSSSSNVSREI 494 (676)
Q Consensus 421 l-~~~~~k~l~~f~~lls~~~~~~~~-~~~ltv~~~~~~~~~~~R~kvL~~L~~fL~~~~~~~~~----~~~~~~~~~~~ 494 (676)
. ..+..++++||.++++|.+..... .+..+ ...+.+||..++.....++.+..+.... ++-+++..+ .
T Consensus 175 ~~~~~~~~il~n~~d~i~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~s~~~g~~e~~~s~g~~~d~~~-~ 248 (393)
T KOG2149|consen 175 TFSRYASKILENFKDVISKLQFYKEDSNRLRT-----TLFSSQYRLSTLRLNTVDLPSLAKGLSELETSEGDEQDAAK-V 248 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----hhhhhhhhhhhhhhhhhccHHHHhccchhhhccCchhhhhc-c
Confidence 4 455555999999999999865532 22112 2345677888887777777766654211 110112222 1
Q ss_pred EEccccccc-cccc-CCCCCcceeecccc---ccccchh-hHHHHHHHHhhhhhhcceeecCCcccCCC--cccHhHHHH
Q psy16387 495 VVTSSTRHV-PLYC-SQQPGKSFIYDKKI---TSNETLD-DVQNYTQMLMPLLMETFIEVVADRKQAGS--DIVVEAVAL 566 (676)
Q Consensus 495 ~~~~~~~~~-~~y~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~l~PlL~~~WlE~~p~~~~~~~--~~~~~~~~~ 566 (676)
.+ ...++ |.|. ..++..++.++... .+..-.+ .+..+|+.|+|++.++|+|++|.+..... ..+.|...+
T Consensus 249 ~v--~~~~v~p~~~~vv~~~~s~~~~~~~l~~a~~~v~n~~L~~ii~~ii~~~~~~~f~i~~~~~~~si~~~a~~e~~~~ 326 (393)
T KOG2149|consen 249 CV--LNPHVIPFEKEVVASLKSFTRSLLPLPNASSGVDNGTLDPIIEIIIPLLYAIWFEIRPPQQRQSIWNGAENEPLTV 326 (393)
T ss_pred ee--eccccccccccccccchhccccccccCchhhccccchhhhHHHHHHHhhhcceEEeecceecccccccccccchHH
Confidence 11 12333 2222 23333333333211 1111112 78999999999999999999987765432 234488899
Q ss_pred HHHHHHHHHHHHHHHhh-ccc-hhHHHHHHH
Q psy16387 567 LQCVVDIILNVLHILQQ-SGT-VGVSWFKQT 595 (676)
Q Consensus 567 l~~vl~i~~~l~~~~~~-~~~-~~~~w~~~~ 595 (676)
|....+|+.+||+.+.+ .+. ....|+|+|
T Consensus 327 ~~~d~~i~s~l~k~~~~~~~~~~~~~~~~k~ 357 (393)
T KOG2149|consen 327 MILDFDIISLLAKKLDGSFNTRKLNSWLRKN 357 (393)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchhHHHHHhc
Confidence 99999999999998844 333 488999999
No 31
>KOG0712|consensus
Probab=100.00 E-value=6.5e-39 Score=337.30 Aligned_cols=221 Identities=22% Similarity=0.391 Sum_probs=201.5
Q ss_pred CCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEE--EEeeCC-ce--eeEeCCC
Q psy16387 51 FGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLE--TISTGP-FV--MRSTCRY 125 (676)
Q Consensus 51 ~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~--~~~~G~-~~--~~~~C~~ 125 (676)
+.+|+|+.+.++|||||+|.|.++++.++++.+|+.|+|.|..++..+ .|+.|.|+|.. ++++|| |. .+.+|..
T Consensus 97 ~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~ 175 (337)
T KOG0712|consen 97 RQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDS 175 (337)
T ss_pred cccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CCCCCCCCCceeEEEeccccccccceeEecc
Confidence 356999999999999999999999999999999999999999887544 89999999964 556799 53 6789999
Q ss_pred CCCcceE--ecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc------ccCCccEEEEEEEecCCCccccCCCee
Q psy16387 126 CKGSRNL--IKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV------GKSKKEIYITFRVEKSDIFERDGPDIH 197 (676)
Q Consensus 126 C~G~G~~--i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g------G~~~GDL~v~i~vk~h~~F~R~G~DL~ 197 (676)
|+|+|.. ..+.|+.|.|.+++.+.+.++|.|++|+.++++|.+.+ +..+||+++.+..++|+.|.|+|+||+
T Consensus 176 C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~ 255 (337)
T KOG0712|consen 176 CNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLY 255 (337)
T ss_pred CCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceecccccc
Confidence 9999998 47999999999999999999999999999999999997 456999999999999999999999999
Q ss_pred eeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecccccCCCCCchhh
Q psy16387 198 SNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTE 276 (676)
Q Consensus 198 ~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt~ 276 (676)
+...|++.||++|+.+.+.|+||+ +.+.++|.+ +++||++++|+|+|||..+.. +|||||.|.|++|+ ++.++
T Consensus 256 ~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~--vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~---~~~~~ 329 (337)
T KOG0712|consen 256 RKLTISLVEALCGFQRVWETLDGRLLKLSSKPGE--VISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK---LSPSQ 329 (337)
T ss_pred eeeecchhhccccceEEEEccCCceEEEecCCCc--eeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC---CChHH
Confidence 999999999999999999999997 889999966 569999999999999987655 99999999999999 55555
Q ss_pred HH
Q psy16387 277 FK 278 (676)
Q Consensus 277 fk 278 (676)
.+
T Consensus 330 ~~ 331 (337)
T KOG0712|consen 330 LK 331 (337)
T ss_pred HH
Confidence 33
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=2.5e-31 Score=280.86 Aligned_cols=185 Identities=23% Similarity=0.390 Sum_probs=155.0
Q ss_pred ChhhHhHhhhCCCCCCCCCC--CCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceec
Q psy16387 24 DPEELFRNIFGQTGGFGGSQ--EGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKC 101 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~--f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C 101 (676)
+|+|+|++||||.+++++.+ +..+.....+|.|+.+.+.|||+|+|.|+++++.+.
T Consensus 97 ~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---------------------- 154 (291)
T PRK14299 97 DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---------------------- 154 (291)
T ss_pred CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----------------------
Confidence 68899999998532222110 001111234789999999999999999999988642
Q ss_pred cccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-ccCCccEEEE
Q psy16387 102 HYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-GKSKKEIYIT 180 (676)
Q Consensus 102 ~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-G~~~GDL~v~ 180 (676)
.+.++|+||||+++|++|+++| |...|||||+
T Consensus 155 -----------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~~GDL~v~ 187 (291)
T PRK14299 155 -----------------------------------------------GERLSVRIPPGVREGQVIRLAGKGRQGGDLYLV 187 (291)
T ss_pred -----------------------------------------------CEEEEEecCCCcCCCcEEEECCCCCCCCCEEEE
Confidence 1467899999999999999998 5555999999
Q ss_pred EEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccc
Q psy16387 181 FRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRK 260 (676)
Q Consensus 181 i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V 260 (676)
|++++|+.|+|+|+||+++++|++.+|++|+++.|+|+||.++|+||+ ++++|+++||+|+|||.. .+.+|||+|
T Consensus 188 i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~----~~~~g~~~rl~g~G~p~~-~~~~GDL~v 262 (291)
T PRK14299 188 VRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPP----RTQAGRKLRLKGKGWPRG-PAGRGDQYA 262 (291)
T ss_pred EEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCC----CcCCCCEEEECCCCCCCC-CCCCCCEEE
Confidence 999999999999999999999999999999999999999999999999 999999999999999963 456899999
Q ss_pred eecccccCCCCCchhhHHHHHHHHHHHH
Q psy16387 261 SYKTILPKGQNVTNTEFKVKRIVIREQL 288 (676)
Q Consensus 261 ~~~V~~Pk~~nlTdt~fksk~i~l~~q~ 288 (676)
++.|.+|+ +++.++ +.++.+..
T Consensus 263 ~~~V~~P~--~l~~~~----~~~l~~l~ 284 (291)
T PRK14299 263 EVRITIPT--RPTPEE----ERLYKQLA 284 (291)
T ss_pred EEEEECCC--CCCHHH----HHHHHHHH
Confidence 99999999 788888 55555544
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.97 E-value=1.3e-29 Score=269.73 Aligned_cols=193 Identities=17% Similarity=0.302 Sum_probs=159.4
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
||.|+|+.|||++++ +.. .....+|.|+.+.+.|||+|+|.|+.+++.+.+.. |.
T Consensus 93 ~~~~~f~~~~g~~~~-----~~~-~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~--------------- 147 (306)
T PRK10266 93 DFDDIFSSIFGQHAR-----QSR-QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN--------------- 147 (306)
T ss_pred CHHHHHHHHhCCCCC-----CCC-CCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc---------------
Confidence 689999999985211 000 11234789999999999999999999999887542 21
Q ss_pred cCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCcc
Q psy16387 104 CNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKE 176 (676)
Q Consensus 104 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GD 176 (676)
|.|... ....++++|+||+|+++|++|+++| ++.+||
T Consensus 148 --g~G~~~----------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 191 (306)
T PRK10266 148 --AFGMIE----------------------------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGD 191 (306)
T ss_pred --CCCeEE----------------------------------EeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCcc
Confidence 222110 0123679999999999999999997 245799
Q ss_pred EEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccc
Q psy16387 177 IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARV 256 (676)
Q Consensus 177 L~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rG 256 (676)
|||+|+++||+.|+|+|+||+++++||+.+|++|+++.|+|++|.+.|+||+ ++++|++++|+|+|||.. +.+|
T Consensus 192 l~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~----g~~~g~~~ri~g~G~p~~--~~~G 265 (306)
T PRK10266 192 LWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPP----GSQAGQRLRVKGKGLVSK--KQTG 265 (306)
T ss_pred EEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCC----CcCCCCEEEECCCCCCCC--CCCC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999964 3589
Q ss_pred cccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 257 KLRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 257 DL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
||+|+|.|.+|+ ++++.+ +.++.+.+.
T Consensus 266 dL~v~~~v~~P~--~l~~~q----~~l~~~l~~ 292 (306)
T PRK10266 266 DLYAVLKIVMPP--KPDEKT----AALWQQLAD 292 (306)
T ss_pred CEEEEEEEECCC--CCCHHH----HHHHHHHHh
Confidence 999999999998 799998 666666554
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.94 E-value=5.6e-27 Score=264.20 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=140.8
Q ss_pred CCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceE
Q psy16387 53 FSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNL 132 (676)
Q Consensus 53 ~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 132 (676)
..-++.+.+.|+|+++|+|+++++++.|.+.| |.
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~------------------------------------------ 688 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GN------------------------------------------ 688 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CC------------------------------------------
Confidence 34578899999999999999999999887654 11
Q ss_pred ecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-c----cCCccEEEEEEEecCCCccccCCCeeeeEeeCceee
Q psy16387 133 IKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-G----KSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQA 207 (676)
Q Consensus 133 i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-G----~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eA 207 (676)
|...+++.++++|+||+|+++|++|||+| | +.+|||||+|+++||+.|+|+|+|||++++|+|.+|
T Consensus 689 ---------G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EA 759 (871)
T TIGR03835 689 ---------TESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVA 759 (871)
T ss_pred ---------CcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCCCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHH
Confidence 12234556899999999999999999997 1 235999999999999999999999999999999999
Q ss_pred ecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceeccc-ccCCCCCchhh
Q psy16387 208 VLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTI-LPKGQNVTNTE 276 (676)
Q Consensus 208 llG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~-~Pk~~nlTdt~ 276 (676)
++|+.+.|+||||.++|+||+ ++++|+++||+|+|||.. ++.||||+|+|.|. .+|...-|+-+
T Consensus 760 LLGgtIeIpTLDGrVkLkIPp----gTqpGqvLRIkGKGMP~~-~~~RGDLyV~f~V~~~~k~~~~~n~q 824 (871)
T TIGR03835 760 YNGGIIDVFGPNKLFNVRIPG----GIKVNDQVIFKDLGLTKT-KYDKGSLIVHLYYSSVMKKNDRTNVQ 824 (871)
T ss_pred hcCCEEEeeCCCCCEEEeeCC----CCCCCcEEEECCCCCCCC-CCCCCCEEEEEEEeeccccCCcCChH
Confidence 999999999999988999999 999999999999999954 35689999999884 67755555444
No 35
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=99.92 E-value=5.5e-26 Score=204.19 Aligned_cols=96 Identities=36% Similarity=0.658 Sum_probs=86.1
Q ss_pred ChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc--chhhhhhhhHHHHHhcccccccccceeeEEecC
Q psy16387 377 TEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL--TANYRSLLPHFLDMISSQTRSHEQARQLTVDLD 454 (676)
Q Consensus 377 ~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l--~~~~~k~l~~f~~lls~~~~~~~~~~~ltv~~~ 454 (676)
|++.|+||++++++||+||||||.++||+||++|||||||+||.+ ..+|.|+|+||++||||....+ +++.+++.+
T Consensus 1 ~~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~~~~~--~~s~s~~~~ 78 (102)
T PF12333_consen 1 QPELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWSTQSS--NRSSSVASS 78 (102)
T ss_pred ChHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCCccCC--Ccceeeecc
Confidence 578999999999999999999999999999999999999999986 4779999999999999995444 366677776
Q ss_pred CCc----chhHHHHHHHHHHHHHH
Q psy16387 455 SRT----TTTVFRIKVLTRLRSML 474 (676)
Q Consensus 455 ~~~----~~~~~R~kvL~~L~~fL 474 (676)
+.. +++|||++||.+|++||
T Consensus 79 ~~~~~~~~~~k~r~~~L~~L~~fL 102 (102)
T PF12333_consen 79 SSSSSKKKSKKWRLKVLQRLAKFL 102 (102)
T ss_pred ccccccccCHHHHHHHHHHHHHhC
Confidence 644 89999999999999997
No 36
>KOG0715|consensus
Probab=99.73 E-value=6.4e-18 Score=178.09 Aligned_cols=170 Identities=31% Similarity=0.652 Sum_probs=149.7
Q ss_pred ChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccc
Q psy16387 24 DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHY 103 (676)
Q Consensus 24 d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~ 103 (676)
++.|.|..+|++ + ......+.++.+.+.++|++|..|+++.+.+.....|.+|.|.|..++.....|..
T Consensus 118 ~~~~~~~~~~~~-~----------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 186 (288)
T KOG0715|consen 118 NPFDVFLEFFGG-K----------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKT 186 (288)
T ss_pred CccchHHHhhcc-c----------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchh
Confidence 788889888874 0 01224567888899999999999999999999999999999999999999999999
Q ss_pred cCceeEE-EEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEccccCCccEEEEEE
Q psy16387 104 CNGTGLE-TISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKEIYITFR 182 (676)
Q Consensus 104 C~G~G~~-~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~gG~~~GDL~v~i~ 182 (676)
|.|+|.+ .....++... +|..|.|.|.++.+.|..|.|.|.+...+.+.+.+|+|+.++.+|++.+.+-. ||+|.+.
T Consensus 187 ~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-~l~v~~~ 264 (288)
T KOG0715|consen 187 CSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-DLFVRLI 264 (288)
T ss_pred hhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-eEEEEEE
Confidence 9999954 3344566555 99999999999999999999999999999999999999999999999974322 9999999
Q ss_pred EecCCCccccCCCeeeeEeeCcee
Q psy16387 183 VEKSDIFERDGPDIHSNAEISLSQ 206 (676)
Q Consensus 183 vk~h~~F~R~G~DL~~~~~Isl~e 206 (676)
|.+++.|+|+|.|+++++.|++.+
T Consensus 265 v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 265 VAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred eccCcccccccCcccccccccccC
Confidence 999999999999999999999864
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.59 E-value=1.2e-15 Score=131.46 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=65.5
Q ss_pred CeeeeEeeCceeeecCcEEEeeecCC-eEEEEecCCCCcccCCCcEEEEcCCcccccccc-ccccccceecccccCCCCC
Q psy16387 195 DIHSNAEISLSQAVLGGTIRIPGIYD-DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEK-ARVKLRKSYKTILPKGQNV 272 (676)
Q Consensus 195 DL~~~~~Isl~eAllG~~i~v~tldG-~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~-~rGDL~V~~~V~~Pk~~nl 272 (676)
||+++++|++.||++|++++|+|++| .++|+||+ ++++|++++|+|+|||...+. .+|||+|+|+|.+|+ ++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~----~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~--~l 74 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPP----GTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPK--KL 74 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETS----T-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--S--ST
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccC----ccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCC--CC
Confidence 79999999999999999999999999 69999999 999999999999999987655 899999999999999 78
Q ss_pred chhh
Q psy16387 273 TNTE 276 (676)
Q Consensus 273 Tdt~ 276 (676)
|+++
T Consensus 75 s~~q 78 (81)
T PF01556_consen 75 SPEQ 78 (81)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 8776
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.6e-13 Score=142.83 Aligned_cols=107 Identities=20% Similarity=0.330 Sum_probs=80.2
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe----------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI----------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQT 165 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ 165 (676)
....+|++|+|+|.. |.+...+|++|+|+|++. ...|+.|+|.|.+.++.
T Consensus 140 ~~~~~C~~C~GsGak-----~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~p--------------- 199 (371)
T COG0484 140 TRSVTCSTCHGSGAK-----PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDP--------------- 199 (371)
T ss_pred ceeeECCcCCCCCCC-----CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCC---------------
Confidence 457899999999975 455678999999999754 36899999999654321
Q ss_pred EEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCC
Q psy16387 166 VRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGH 245 (676)
Q Consensus 166 irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~ 245 (676)
.. -|.+.-.|.- ...++|+||+ |+..|+.+|++|+
T Consensus 200 ---------------------------------------C~-~C~G~G~v~~-~~~i~V~IPa----Gv~~g~~ir~~g~ 234 (371)
T COG0484 200 ---------------------------------------CG-KCKGKGRVKK-KKSISVNIPA----GVDDGDRIRLSGE 234 (371)
T ss_pred ---------------------------------------CC-CCCCCCeEee-eeEEEEECCC----CCccCCEEEEecC
Confidence 01 1222222211 1247999999 9999999999999
Q ss_pred ccccccccccccccceeccccc
Q psy16387 246 KKFVKKEKARVKLRKSYKTILP 267 (676)
Q Consensus 246 G~p~~~~~~rGDL~V~~~V~~P 267 (676)
|-...+++..|||||.+.|+--
T Consensus 235 G~~g~~Ggp~GDLyv~i~v~~h 256 (371)
T COG0484 235 GEAGPNGGPAGDLYVFVHVKPH 256 (371)
T ss_pred cccCCCCCCCccEEEEEEeecC
Confidence 9887777788999999998644
No 39
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.38 E-value=7.6e-13 Score=109.84 Aligned_cols=61 Identities=44% Similarity=1.056 Sum_probs=48.3
Q ss_pred cCCCCCCCcCCCCcceeccccCceeEEEEee----CCceeeEeCCCCCCcceEe-cccCCCCCCCc
Q psy16387 84 CTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCKGSRNLI-KNPCTTCDGKG 144 (676)
Q Consensus 84 C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i-~~~C~~C~G~G 144 (676)
|+.|+|+|++++..+.+|+.|+|+|+++..+ +.++++++|+.|+|+|++| .++|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 8999999999999999999999999876543 4467899999999999999 99999999986
No 40
>KOG0713|consensus
Probab=99.25 E-value=1.6e-12 Score=136.61 Aligned_cols=214 Identities=18% Similarity=0.211 Sum_probs=161.7
Q ss_pred hhHhHhhhCCCCC-CCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceecccc
Q psy16387 26 EELFRNIFGQTGG-FGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYC 104 (676)
Q Consensus 26 ~diF~~fFGg~~~-fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C 104 (676)
.|+|+.||+.+|. ++|.. . ....++|.++...+..++++.|.|...+....+.+.|. |.|+- .|
T Consensus 100 ~~~f~~~f~dfg~~~~g~~-~--~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~~-----------~~ 164 (336)
T KOG0713|consen 100 NDIFSAFFGDFGVTVGGNP-L--EEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGTR-----------KC 164 (336)
T ss_pred cchHHHhhcccccccCCCc-c--cCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCccc-----------cc
Confidence 5888888875321 11111 1 12356899999999999999999998777766665554 22221 12
Q ss_pred CceeEEEEeeCCceeeEeCCCCCCcceEe-cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc------ccCCccE
Q psy16387 105 NGTGLETISTGPFVMRSTCRYCKGSRNLI-KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV------GKSKKEI 177 (676)
Q Consensus 105 ~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g------G~~~GDL 177 (676)
+..-. ...+..|.|....+ ...|..|++.+...+....++.+..|...|....+.. -+.+||+
T Consensus 165 ~~~~~----------~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~ 234 (336)
T KOG0713|consen 165 NCRLE----------MFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDL 234 (336)
T ss_pred CChhh----------heeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCc
Confidence 21111 11223333433332 4678888888899999999999999999999888875 3579999
Q ss_pred EEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCccccc-ccccc
Q psy16387 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVK-KEKAR 255 (676)
Q Consensus 178 ~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~-~~~~r 255 (676)
++.+..-+|+.|.|+++++++++.+++.+++.|+..++.++++. +.+.... ++.|+..++.+++|||.. .....
T Consensus 235 ~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~----~~~p~~~~~~~~~~~~~l~~~~~~ 310 (336)
T KOG0713|consen 235 FFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKK----ITWPGARTRKKGEGMPLLKNRNEK 310 (336)
T ss_pred eeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhh----ccccchhhhhhhccchhhhccchh
Confidence 99999999999999999999999999999999999999999875 4444444 778999999999999954 46788
Q ss_pred ccccceecccccC
Q psy16387 256 VKLRKSYKTILPK 268 (676)
Q Consensus 256 GDL~V~~~V~~Pk 268 (676)
|.+++++.+..|+
T Consensus 311 ~~~~~t~~~~~~~ 323 (336)
T KOG0713|consen 311 GNLYVTFDVEFPK 323 (336)
T ss_pred cceeEEecccCcc
Confidence 9999999998886
No 41
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.6e-10 Score=127.25 Aligned_cols=109 Identities=24% Similarity=0.346 Sum_probs=81.2
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... -....+|+.|+|+|.+. ..+|+.|.|.|.+....
T Consensus 152 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~------------- 213 (386)
T PRK14289 152 KKYVPCSHCHGTGAEG-----NNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKK------------- 213 (386)
T ss_pred EeecccCCCCCCCCCC-----CCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcC-------------
Confidence 3467899999999641 12347799999999764 35899999999654321
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
--.|++...+..- ..++|+||+ |+++|++++++
T Consensus 214 ------------------------------------------C~~C~G~g~v~~~-~~~~V~Ip~----G~~~G~~i~l~ 246 (386)
T PRK14289 214 ------------------------------------------CKKCGGEGIVYGE-EVITVKIPA----GVAEGMQLSMN 246 (386)
T ss_pred ------------------------------------------CCCCCCCcEEeee-EEEEEEeCC----CCCCCCEEEEe
Confidence 0124444444321 147899999 99999999999
Q ss_pred CCccccccccccccccceecccccCC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPKG 269 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk~ 269 (676)
|+|++...+..+|||+|++.|+.|+.
T Consensus 247 g~G~~~~~~~~~GDL~v~v~v~~~~~ 272 (386)
T PRK14289 247 GKGNAGKHGGVNGDLLVVIEEEPHPE 272 (386)
T ss_pred ccccCCCCCCCCccEEEEEEEecCCc
Confidence 99998655677899999999998873
No 42
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=3.4e-10 Score=124.87 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=78.7
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|+|.|.+.... .
T Consensus 171 ~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~-----C----------- 229 (392)
T PRK14279 171 TSPAPCTTCHGSGARP-----GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDP-----C----------- 229 (392)
T ss_pred eccccCCCCccccccC-----CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCc-----C-----------
Confidence 4567899999999641 12347899999999865 47999999999653221 0
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
.-|.+...+..- ..++|.||+ |+++|++++++|+|.
T Consensus 230 ---------------------------------------~~C~G~g~v~~~-~~~~V~Ip~----G~~~G~~i~~~g~G~ 265 (392)
T PRK14279 230 ---------------------------------------EECKGTGVTTRT-RTINVRIPP----GVEDGQRIRLAGQGE 265 (392)
T ss_pred ---------------------------------------CCCCCCeEEEEe-eeeEEEeCC----CCCCCcEEEEeCCcc
Confidence 123333333321 247899999 999999999999999
Q ss_pred ccccccccccccceecccccC
Q psy16387 248 FVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~Pk 268 (676)
+...+...|||+|++.|+..+
T Consensus 266 ~~~~~~~~GDL~i~i~v~~h~ 286 (392)
T PRK14279 266 AGLRGAPSGDLYVTVHVRPDK 286 (392)
T ss_pred CCCCCCCCCCEEEEEEEecCC
Confidence 876566779999999886444
No 43
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.4e-10 Score=123.23 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=79.9
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... -....+|+.|+|+|.+. ..+|+.|.|.|.+.... .
T Consensus 142 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~-----C----------- 200 (373)
T PRK14301 142 PKNVTCDDCGGSGAAP-----GTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHP-----C----------- 200 (373)
T ss_pred eecccCCCCCCcccCC-----CCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCC-----C-----------
Confidence 3467899999999641 12346899999999764 47999999999653210 1
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
.-|.+...+.. ...++|.||+ |+++|++++++|+|.
T Consensus 201 ---------------------------------------~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~g~G~ 236 (373)
T PRK14301 201 ---------------------------------------PKCKGSGIVQQ-TRELKVRIPA----GVDTGSRLRLRGEGE 236 (373)
T ss_pred ---------------------------------------CCCCCCceecc-ceEEEEEeCC----CCcCCCEEEEecccc
Confidence 12333333322 1247899999 999999999999999
Q ss_pred ccccccccccccceecccccCC
Q psy16387 248 FVKKEKARVKLRKSYKTILPKG 269 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~Pk~ 269 (676)
+...++.+|||+|++.|+.++.
T Consensus 237 ~~~~~~~~GDLiv~i~v~~h~~ 258 (373)
T PRK14301 237 PGVHGGPPGDLYVVITVEDDKI 258 (373)
T ss_pred CCCCCCCCcCEEEEEEEEECCC
Confidence 8665667899999999988773
No 44
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=5.4e-10 Score=122.52 Aligned_cols=106 Identities=17% Similarity=0.313 Sum_probs=76.5
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+....
T Consensus 140 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~----------------- 197 (371)
T PRK10767 140 PTLVTCDTCHGSGAKP-----GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDP----------------- 197 (371)
T ss_pred eecccCCCCCCcccCC-----CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCC-----------------
Confidence 3467899999999641 12245899999999764 46899999999653210
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
..-|.+.-.+.. ...++|.||+ |+++|++++++|+|+
T Consensus 198 --------------------------------------C~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~g~G~ 234 (371)
T PRK10767 198 --------------------------------------CKKCHGQGRVEK-EKTLSVKIPA----GVDTGDRIRLSGEGE 234 (371)
T ss_pred --------------------------------------CCCCCCCceEee-eeeEEEecCC----CCCCCcEEEEecCcc
Confidence 112333333322 1247899999 999999999999999
Q ss_pred ccccccccccccceecccc
Q psy16387 248 FVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~ 266 (676)
+...+..+|||+|.+.++.
T Consensus 235 ~~~~~~~~GDL~v~i~v~~ 253 (371)
T PRK10767 235 AGERGGPAGDLYVQIHVKE 253 (371)
T ss_pred CCCCCCCCcCEEEEEEEee
Confidence 8655667899999988753
No 45
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=1.2e-09 Score=119.71 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=81.6
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|.. +.....+|+.|+|+|.+. ..+|+.|.|.|.+...
T Consensus 137 r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--------------- 196 (371)
T PRK14287 137 REETCGTCHGSGAK-----PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ--------------- 196 (371)
T ss_pred eeccCCCCCCcccC-----CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc---------------
Confidence 46789999999964 122346799999999764 3589999999854321
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
..+.|++...|.. ...++|.||+ |+++|++++++|
T Consensus 197 ----------------------------------------~C~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~G 231 (371)
T PRK14287 197 ----------------------------------------KCATCGGKGKVRK-RKKINVKVPA----GIDHGQQLRVSG 231 (371)
T ss_pred ----------------------------------------cCCCCCCeeEEee-eEEEEEEECC----cCCCCCEEEEcc
Confidence 2346777777753 1248999999 999999999999
Q ss_pred CccccccccccccccceecccccC
Q psy16387 245 HKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
+|++...+..+|||+|++.|+..+
T Consensus 232 ~G~~~~~~~~~GDL~v~i~v~~h~ 255 (371)
T PRK14287 232 QGEAGVNGGPPGDLYVVFNVKPHE 255 (371)
T ss_pred CCcCCCCCCCCccEEEEEEEecCC
Confidence 999876566789999999886544
No 46
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=4.3e-09 Score=115.16 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=78.9
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|.. ......+|+.|+|+|.+. ..+|+.|.|.|.+.... .
T Consensus 144 ~r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~-----C----------- 202 (365)
T PRK14285 144 TRNMLCESCLGKKSE-----KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNP-----C----------- 202 (365)
T ss_pred eecccCCCCCCcccC-----CCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCC-----C-----------
Confidence 346789999999963 122346799999999764 46899999999653221 0
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
--|.+.-.+.. ...++|+||+ |+++|++++++|+|.
T Consensus 203 ---------------------------------------~~C~G~g~v~~-~~~~~V~Ip~----G~~~G~~i~~~g~G~ 238 (365)
T PRK14285 203 ---------------------------------------KSCKGKGSLKK-KETIELKIPA----GIDDNQQIKMRGKGS 238 (365)
T ss_pred ---------------------------------------CCCCCCCEEec-cEEEEEEECC----CCCCCCEEEEeeccc
Confidence 01223322321 1247899999 999999999999999
Q ss_pred ccccccccccccceecccccC
Q psy16387 248 FVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~Pk 268 (676)
+...+...|||+|++.++.++
T Consensus 239 ~~~~~~~~GDL~v~i~v~~h~ 259 (365)
T PRK14285 239 VNPDNQQYGDLYIKILIKPHK 259 (365)
T ss_pred cCCCCCCCCCEEEEEEEecCC
Confidence 876556689999999988777
No 47
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=5.8e-09 Score=114.80 Aligned_cols=108 Identities=20% Similarity=0.380 Sum_probs=78.4
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|.. +.....+|+.|+|+|.+. ..+|+.|.|.|.+.....
T Consensus 146 ~r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C------------ 208 (380)
T PRK14297 146 TRNENCETCNGTGAK-----PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPC------------ 208 (380)
T ss_pred eeeccCCCccccccc-----CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCC------------
Confidence 346789999999974 223467899999999763 468999999996543210
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
. -|.+.-.++.- ..++|.||+ |+++|++++++
T Consensus 209 ------------------------------------------~-~C~G~g~v~~~-~~i~V~Ip~----G~~~G~~I~l~ 240 (380)
T PRK14297 209 ------------------------------------------N-KCHGKGKVRKN-RKIKVNVPA----GVDTGNVIPLR 240 (380)
T ss_pred ------------------------------------------C-CCCCCeEEEeE-eEEEEEeCC----CCCCCcEEEEe
Confidence 0 12222222211 137899999 99999999999
Q ss_pred CCccccccccccccccceecccccC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
|+|.+...+...|||+|++.|+.++
T Consensus 241 g~G~~~~~~~~~GDL~v~v~v~~h~ 265 (380)
T PRK14297 241 GQGEHGKNGGPTGDLYINIRVAPHK 265 (380)
T ss_pred cCccCCCCCCCCccEEEEEEEcCCC
Confidence 9999865556689999999988776
No 48
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=5.7e-09 Score=114.27 Aligned_cols=113 Identities=19% Similarity=0.498 Sum_probs=80.6
Q ss_pred eeeecCCCCCCCcC-----CCC----cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec----------------
Q psy16387 80 IMDTCTRCHGEKCE-----PGT----KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK---------------- 134 (676)
Q Consensus 80 r~~~C~~C~GtG~~-----~g~----~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~---------------- 134 (676)
....|+.|+|+|.. +|. ...+|+.|+|.|.. ...+|+.|+|.|.+..
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 235 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI--------PEEKCPRCNGTGTVVVNEDISVKIPKGATDNL 235 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE--------ccCCCCCCCCceeEEEeeEEEEEECCCCCCCc
Confidence 35689999999953 121 24689999999975 3568999999986420
Q ss_pred -----ccCCCCCC---C---------------------------------ce---ee-eeeEEEEEeCCCCcCCcEEEEc
Q psy16387 135 -----NPCTTCDG---K---------------------------------GQ---FA-QRQTITVPVPAGVEDGQTVRMN 169 (676)
Q Consensus 135 -----~~C~~C~G---~---------------------------------G~---v~-~~~~l~V~IP~Gv~~G~~irl~ 169 (676)
..-..-.| . |. +. ....++|+||+|+++|++++++
T Consensus 236 ~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~ 315 (365)
T PRK14290 236 RLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIK 315 (365)
T ss_pred EEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEEC
Confidence 00000011 1 11 11 2245899999999999999999
Q ss_pred c-c------cCCccEEEEEEEecCCCccccCCCeeeeE
Q psy16387 170 V-G------KSKKEIYITFRVEKSDIFERDGPDIHSNA 200 (676)
Q Consensus 170 g-G------~~~GDL~v~i~vk~h~~F~R~G~DL~~~~ 200 (676)
| | ..+|||||+|+|+.++.|.+++.+|+.++
T Consensus 316 g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 316 GAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 7 2 24799999999999999999998887664
No 49
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=7.8e-09 Score=113.43 Aligned_cols=106 Identities=15% Similarity=0.258 Sum_probs=76.3
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+.... .+
T Consensus 147 ~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~-----C~------ 210 (372)
T PRK14296 147 DLLTNCSKCFGSGAES-----NSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNK-----CK------ 210 (372)
T ss_pred eeeeccCCCCCCccCC-----CCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeeccc-----cc------
Confidence 3467899999999641 12346899999999764 25899999999654221 11
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
.|.+...+.. ...++|+||+ |+++|++++++
T Consensus 211 --------------------------------------------~C~G~g~v~~-~~~~~V~Ip~----G~~~G~~i~~~ 241 (372)
T PRK14296 211 --------------------------------------------NCKGKGKYLE-RKKIEVNIPK----GIRPNQQIKLS 241 (372)
T ss_pred --------------------------------------------CCCCceEEEE-EEEEEEEECC----CCCCCCEEEEe
Confidence 1222222221 1247899999 99999999999
Q ss_pred CCccccccccccccccceecccc
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~ 266 (676)
|+|.+...++.+|||+|++.|+-
T Consensus 242 g~G~~~~~~~~~GDL~v~v~v~~ 264 (372)
T PRK14296 242 QKGHASLNNGVNGDLIIDIYLKE 264 (372)
T ss_pred ccccCCCCCCCCccEEEEEEEeC
Confidence 99998655677899999998764
No 50
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=8.3e-09 Score=113.51 Aligned_cols=107 Identities=19% Similarity=0.313 Sum_probs=79.0
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|... .....+|+.|.|+|.+. ..+|+.|.|.|......
T Consensus 145 r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-------------- 205 (378)
T PRK14283 145 HTKKCPVCNGSRAEP-----GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKP-------------- 205 (378)
T ss_pred eeccCCCCCccccCC-----CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCC--------------
Confidence 467899999999541 12356899999999864 35899999999653210
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
-..|.+.-.+..- ..++|.||+ |+++|++++++|
T Consensus 206 -----------------------------------------C~~C~G~g~v~~~-~~l~V~Ipp----G~~~G~~i~l~g 239 (378)
T PRK14283 206 -----------------------------------------CSNCHGKGVVRET-KTISVKIPA----GVETGSRLRVSG 239 (378)
T ss_pred -----------------------------------------CCCCCCceeeccc-eeEEEEECC----CCCCCcEEEEec
Confidence 1123333333221 247899999 999999999999
Q ss_pred CccccccccccccccceecccccC
Q psy16387 245 HKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
+|+|...+..+|||+|++.|+.++
T Consensus 240 ~G~~~~~~~~~GDLiv~i~v~~~~ 263 (378)
T PRK14283 240 EGEMGDRGGEPGDLYVVIKVKPHK 263 (378)
T ss_pred cccCCCCCCCCccEEEEEEEEcCC
Confidence 999976667799999999998776
No 51
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=7.9e-09 Score=113.41 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=77.5
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+.... .
T Consensus 148 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~-----C----------- 206 (372)
T PRK14286 148 PRLESCVDCNGSGASK-----GSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNP-----C----------- 206 (372)
T ss_pred eccccCCCCcCCCcCC-----CCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEeccc-----C-----------
Confidence 4567899999999641 12346899999999764 46999999999654221 1
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
.-|.+...+..- ..++|.||+ |+++|++++++|+|+
T Consensus 207 ---------------------------------------~~C~G~g~~~~~-~~l~V~Ip~----G~~~G~~i~~~g~G~ 242 (372)
T PRK14286 207 ---------------------------------------KTCGGQGLQEKR-RTINIKIPP----GVETGSRLKVSGEGE 242 (372)
T ss_pred ---------------------------------------CCCCCCcEEecc-eEEEEEECC----CCCCCCEEEECCccc
Confidence 123333333221 247899999 999999999999999
Q ss_pred ccccccccccccceecccc
Q psy16387 248 FVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~ 266 (676)
+...+..+|||+|.+.|+.
T Consensus 243 ~~~~~~~~GDL~i~i~v~~ 261 (372)
T PRK14286 243 AGPNGGPHGDLYVVTHIKK 261 (372)
T ss_pred cCCCCCCCceEEEEEEEcc
Confidence 8765667899999998764
No 52
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.78 E-value=1e-08 Score=93.20 Aligned_cols=59 Identities=34% Similarity=0.765 Sum_probs=50.2
Q ss_pred eeecCCCCCCCcCCCCcceeccccCceeEEEEeeCC-ceeeEeCCCCCCcceEecccCCCCCCCceeee
Q psy16387 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGP-FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQ 148 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~-~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 148 (676)
...|..|+|+|.. +|+.|+|+|.+..++++ ++.+++|+.|+|+|+. +|+.|+|+|++.+
T Consensus 41 ~v~C~~C~GsG~~------~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ------VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc------CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 4789999999963 79999999988776655 6678999999999985 4999999997653
No 53
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=8.2e-09 Score=113.19 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=77.4
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+....
T Consensus 150 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~------------- 211 (369)
T PRK14282 150 DRYETCPHCGGTGVEP-----GSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEY------------- 211 (369)
T ss_pred eecccCCCCCccCCCC-----CCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCC-------------
Confidence 3467899999999641 12346899999999764 35899999999653211
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
-.-|.+...+.. ...++|.||+ |+.+|++++++
T Consensus 212 ------------------------------------------C~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~ 244 (369)
T PRK14282 212 ------------------------------------------CHECGGSGRIRR-RVRTTVKIPA----GVEDGTVLRIT 244 (369)
T ss_pred ------------------------------------------CCCCCCceeEEE-EEEEEEEeCC----CCCCCCEEEEe
Confidence 112333333332 1247899999 99999999999
Q ss_pred CCccccccccccccccceecccccC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
|+|.+...+...|||+|++.|+.-+
T Consensus 245 g~G~~~~~~~~~GDl~i~i~v~~h~ 269 (369)
T PRK14282 245 GGGNAGYYGGPYGDLYVIVRVRPDP 269 (369)
T ss_pred cccCCCCCCCCCCCEEEEEEEecCC
Confidence 9999865567789999999876433
No 54
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.77 E-value=9.7e-09 Score=112.87 Aligned_cols=105 Identities=19% Similarity=0.358 Sum_probs=76.1
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+.... .
T Consensus 142 r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C-------- 203 (376)
T PRK14280 142 KEETCDTCHGSGAKP-----GTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEK-----C-------- 203 (376)
T ss_pred eeccCCCCCCcccCC-----CCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCC-----C--------
Confidence 467899999999641 12346799999999753 45899999999653210 0
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
--|.+.-.+.. ...++|.||+ |+++|++++++|
T Consensus 204 ------------------------------------------~~C~G~g~v~~-~~~i~V~Ip~----G~~~G~~i~l~G 236 (376)
T PRK14280 204 ------------------------------------------PTCHGKGKVRK-RKKINVKIPA----GVDNGQQIRVSG 236 (376)
T ss_pred ------------------------------------------CCCCCceEEEE-EEEEEEEeCC----CCcCCcEEEEcc
Confidence 11333333321 1247899999 999999999999
Q ss_pred Cccccccccccccccceecccc
Q psy16387 245 HKKFVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~~ 266 (676)
+|++...+..+|||+|++.|+-
T Consensus 237 ~G~~~~~~~~~GDL~v~i~v~~ 258 (376)
T PRK14280 237 EGEPGVNGGPAGDLYVVFRVRP 258 (376)
T ss_pred cccCCCCCCCCcCEEEEEEEec
Confidence 9998766677899999998764
No 55
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=9.7e-09 Score=113.02 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=77.6
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|.. +.....+|+.|+|+|.+. ..+|+.|.|.|.+.... .+
T Consensus 144 ~~~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~-----C~------ 207 (380)
T PRK14276 144 NREATCHTCNGSGAK-----PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEP-----CQ------ 207 (380)
T ss_pred eccccCCCCcCcccC-----CCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCC-----CC------
Confidence 346789999999964 122346899999999764 35899999999653221 11
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
-|.+...+..- ..++|.||+ |+++|++++++
T Consensus 208 --------------------------------------------~C~G~g~~~~~-~~l~V~Ip~----G~~~G~~i~l~ 238 (380)
T PRK14276 208 --------------------------------------------TCHGTGHEKQA-HTVSVKIPA----GVETGQQIRLQ 238 (380)
T ss_pred --------------------------------------------CCCCceEEEEE-EEEEEEeCC----CccCCcEEEEe
Confidence 13333223211 247899999 99999999999
Q ss_pred CCccccccccccccccceecccccC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
|+|++...+..+|||+|+|+|+..+
T Consensus 239 G~G~~~~~~~~~GDL~v~i~v~~h~ 263 (380)
T PRK14276 239 GQGEAGFNGGPYGDLYVVFRVEPSK 263 (380)
T ss_pred ccccCCCCCCCCcCEEEEEEEEECc
Confidence 9999876566789999999987544
No 56
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=1.1e-08 Score=112.27 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=78.7
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... -....+|+.|+|+|.+. ..+|..|.|.|.+.... .
T Consensus 141 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C------- 203 (374)
T PRK14293 141 PHLETCETCRGSGAKP-----GTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDP-----C------- 203 (374)
T ss_pred eccccCCCCCCcCCCC-----CCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccC-----C-------
Confidence 3467899999999631 12346899999999754 35899999999653210 1
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
.-|.+...+.. ...++|.||+ |+++|++++++
T Consensus 204 -------------------------------------------~~C~G~g~v~~-~~~~~V~Ipp----G~~~G~~i~l~ 235 (374)
T PRK14293 204 -------------------------------------------DACGGQGVKQV-TKKLKINIPA----GVDTGTRLRVS 235 (374)
T ss_pred -------------------------------------------CCCCCCccccc-ceEEEEEeCC----CCCCCCEEEEc
Confidence 11333333322 1246899999 99999999999
Q ss_pred CCccccccccccccccceecccccC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
|+|++...+..+|||+|++.|+.|+
T Consensus 236 g~G~~~~~~~~~GDL~v~v~v~~~~ 260 (374)
T PRK14293 236 GEGDAGLRGGPPGDLYVYLFVKNDP 260 (374)
T ss_pred cCccCCCCCCCCcCEEEEEEEeCCC
Confidence 9999865566789999999999887
No 57
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=9.9e-09 Score=113.25 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=76.2
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... .....+|+.|.|+|.++ ..+|+.|.|.|.+.... .
T Consensus 164 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C----------- 222 (389)
T PRK14295 164 TSQAPCPACSGTGAKN-----GTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDP-----C----------- 222 (389)
T ss_pred eccccCCCCcccccCC-----CCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccC-----C-----------
Confidence 3467899999999641 12346899999999754 47999999999653221 0
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
.-|.+.-.+.. ...++|.||+ |+++|++++++|+|+
T Consensus 223 ---------------------------------------~~C~G~g~~~~-~~~l~V~Ip~----G~~~G~~i~l~g~G~ 258 (389)
T PRK14295 223 ---------------------------------------LVCKGSGRAKS-SRTMQVRIPA----GVSDGQRIRLRGKGA 258 (389)
T ss_pred ---------------------------------------CCCCCCceEee-eeEEEEEeCC----CCCCCCEEEEccccc
Confidence 01222222221 1247899999 999999999999999
Q ss_pred ccccccccccccceeccc
Q psy16387 248 FVKKEKARVKLRKSYKTI 265 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~ 265 (676)
+...+..+|||+|++.|+
T Consensus 259 ~~~~~~~~GDL~v~i~v~ 276 (389)
T PRK14295 259 PGERGGPAGDLYVVVHVD 276 (389)
T ss_pred CCCCCCCCccEEEEEEEe
Confidence 876667789999998875
No 58
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=1.4e-08 Score=111.57 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=76.7
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|+|.|.+.... .+
T Consensus 137 ~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C~------ 200 (378)
T PRK14278 137 DTAVLCDRCHGKGTAG-----DSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDP-----CH------ 200 (378)
T ss_pred EeeccCCCCcCccCCC-----CCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCC-----CC------
Confidence 3467899999999641 22356899999999754 36899999999653221 11
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
.|.+.-.+.. ...++|.||| |+++|++++++
T Consensus 201 --------------------------------------------~C~G~g~v~~-~~~~~V~Ip~----G~~~G~~i~~~ 231 (378)
T PRK14278 201 --------------------------------------------ECAGDGRVRA-RREITVKIPA----GVGDGMRIRLA 231 (378)
T ss_pred --------------------------------------------CCCCceeEec-ceEEEEEECC----CCCCCcEEEEc
Confidence 2333333322 1247999999 99999999999
Q ss_pred CCccccccccccccccceecccc
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~ 266 (676)
|+|.+...+...|||+|.+.++.
T Consensus 232 g~G~~~~~~~~~GDL~v~i~~~~ 254 (378)
T PRK14278 232 AQGEVGPGGGPAGDLYVEVHEQP 254 (378)
T ss_pred cCcCCCCCCCCCCCEEEEEEECc
Confidence 99987665666799999988764
No 59
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=9.7e-09 Score=112.87 Aligned_cols=104 Identities=24% Similarity=0.411 Sum_probs=76.0
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|.. +.....+|+.|+|+|.++ ..+|+.|.|.|.+.... .+
T Consensus 140 r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C~------- 202 (377)
T PRK14298 140 RAERCSTCSGTGAK-----PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESP-----CP------- 202 (377)
T ss_pred eeccCCCCCCCccc-----CCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCC-----CC-------
Confidence 46789999999964 122346799999999764 35899999999653221 11
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
-|.+...+.. ...++|.||+ |+++|++++++|
T Consensus 203 -------------------------------------------~C~G~g~v~~-~~~l~V~Ipp----G~~~G~~i~~~g 234 (377)
T PRK14298 203 -------------------------------------------VCSGTGKVRK-TRKITVNVPA----GADSGLRLKLSG 234 (377)
T ss_pred -------------------------------------------CCCCccEEEE-EEEEEecCCC----CCCCCCEEEEec
Confidence 1333333322 1247899999 999999999999
Q ss_pred Cccccccccccccccceeccc
Q psy16387 245 HKKFVKKEKARVKLRKSYKTI 265 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~ 265 (676)
+|.+...++.+|||+|++.|+
T Consensus 235 ~G~~~~~~~~~GDL~i~i~v~ 255 (377)
T PRK14298 235 EGEAGSPGAPSGDLYIVLHVK 255 (377)
T ss_pred ccCCCCCCCCCcCEEEEEEEe
Confidence 999865567789999999876
No 60
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=1.4e-08 Score=111.96 Aligned_cols=108 Identities=22% Similarity=0.348 Sum_probs=76.8
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+.... .
T Consensus 153 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~-----C------- 215 (386)
T PRK14277 153 ERFEKCDVCKGSGAKP-----GSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDP-----C------- 215 (386)
T ss_pred EeeccCCCCCCCCcCC-----CCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCC-----C-------
Confidence 3467899999999641 12346899999999764 25899999999653221 0
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
. -|.+...+.. ...++|.||+ |+++|++++++
T Consensus 216 ------------------------------------------~-~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~ 247 (386)
T PRK14277 216 ------------------------------------------N-KCGGTGRIRR-RRKIKVNIPA----GIDDGQMITLR 247 (386)
T ss_pred ------------------------------------------C-CCCCCcEEee-eeEEEEecCC----CccCCcEEEEc
Confidence 1 1333333321 1247899999 99999999999
Q ss_pred CCccccccccccccccceecccccC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
|+|++...+..+|||+|++.|+.-+
T Consensus 248 g~G~~~~~~~~~GDL~v~i~v~~h~ 272 (386)
T PRK14277 248 GEGEPGIKGGPNGDLYIVIKVKPHP 272 (386)
T ss_pred cccccCCCCCCCccEEEEEEEecCC
Confidence 9999865556789999999876433
No 61
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.70 E-value=2e-08 Score=109.52 Aligned_cols=108 Identities=20% Similarity=0.357 Sum_probs=77.9
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|...... .
T Consensus 141 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C------- 203 (354)
T TIGR02349 141 PRKESCETCHGTGAKP-----GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEP-----C------- 203 (354)
T ss_pred ecCCcCCCCCCCCCCC-----CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCC-----C-------
Confidence 3467899999999641 12356899999999755 25899999999653210 0
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
.-|.+...+.. ...++|+||+ |+++|++++++
T Consensus 204 -------------------------------------------~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~ 235 (354)
T TIGR02349 204 -------------------------------------------STCKGKGRVKE-RKTITVKIPA----GVDTGQRLRVS 235 (354)
T ss_pred -------------------------------------------CCCCCCcEecc-cceEEEEECC----CCCCCCEEEEe
Confidence 11222222221 1247999999 99999999999
Q ss_pred CCccccccccccccccceecccccC
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
|+|.+...+...|||+|++.++.++
T Consensus 236 g~G~~~~~~~~~GDl~v~i~v~~h~ 260 (354)
T TIGR02349 236 GKGNAGENGGPNGDLYVVIRVKPHK 260 (354)
T ss_pred cCccCCCCCCCCCCEEEEEEEecCc
Confidence 9999865566789999999988765
No 62
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.69 E-value=2.2e-08 Score=110.60 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=76.5
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEE
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM 168 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl 168 (676)
....|+.|+|+|.. +.....+|+.|+|+|.+. ..+|+.|.|.|.+.... .
T Consensus 157 r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~-----C------------ 214 (391)
T PRK14284 157 GYKSCDACSGSGAN-----SSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDP-----C------------ 214 (391)
T ss_pred eeccCCCCcccccC-----CCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCc-----C------------
Confidence 46789999999964 122357899999999864 47999999998643210 0
Q ss_pred ccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccc
Q psy16387 169 NVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKF 248 (676)
Q Consensus 169 ~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p 248 (676)
--|.+...+.. ...++|.||+ |+..|++++++|+|-.
T Consensus 215 --------------------------------------~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~g~G~~ 251 (391)
T PRK14284 215 --------------------------------------SVCRGQGRIKD-KRSVHVHIPA----GVDSGMRLKMEGYGDA 251 (391)
T ss_pred --------------------------------------CCCCCcceecc-eEEEEEEECC----CCCCCCEEEEeccccC
Confidence 01333333321 1247999999 9999999999999977
Q ss_pred cccccccccccceecccc
Q psy16387 249 VKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 249 ~~~~~~rGDL~V~~~V~~ 266 (676)
...++..|||+|++.++-
T Consensus 252 ~~~~~~~GDL~v~i~v~~ 269 (391)
T PRK14284 252 GQNGAPAGDLYVFIDVEP 269 (391)
T ss_pred CCCCCCCCCEEEEEEEec
Confidence 655667899999988764
No 63
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.68 E-value=2.8e-08 Score=109.15 Aligned_cols=106 Identities=20% Similarity=0.293 Sum_probs=76.8
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+.... .+
T Consensus 143 ~r~~~C~~C~G~g~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C~---------- 202 (372)
T PRK14300 143 SSEVKCDTCHGSGSEK-----GETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNP-----CK---------- 202 (372)
T ss_pred eeccccCCCCCcccCC-----CCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCC-----CC----------
Confidence 3467899999999631 12346899999999764 46899999999654221 11
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
-|.+...+..- -.++|.||+ |+++|++++++|+|.
T Consensus 203 ----------------------------------------~C~G~g~v~~~-~~~~V~Ip~----G~~~G~~i~l~g~G~ 237 (372)
T PRK14300 203 ----------------------------------------KCHGMGRYHKQ-RNLSVNIPA----GVENGTRIRHTGEGE 237 (372)
T ss_pred ----------------------------------------CCCCceEEEee-EEEEEEECC----CCCCCcEEEEecccc
Confidence 13333333221 147899999 999999999999998
Q ss_pred ccccccccccccceecccc
Q psy16387 248 FVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~ 266 (676)
+...+...|||+|++.|+-
T Consensus 238 ~~~~~~~~GDL~v~i~v~~ 256 (372)
T PRK14300 238 AGIRGGNSGDLYVDIAIKP 256 (372)
T ss_pred CCCCCCCCCCEEEEEEECC
Confidence 8655667899999988753
No 64
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.68 E-value=3e-08 Score=108.64 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=76.0
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEE
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM 168 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl 168 (676)
....|+.|+|+|.... ....+|+.|+|+|.+. ..+|+.|.|.|......
T Consensus 143 r~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~------------------ 199 (366)
T PRK14294 143 KLETCEECHGSGCEPG-----TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSP------------------ 199 (366)
T ss_pred ecccCCCCCCccccCC-----CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcC------------------
Confidence 4678999999996421 1246899999999764 57999999999643210
Q ss_pred ccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccc
Q psy16387 169 NVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKF 248 (676)
Q Consensus 169 ~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p 248 (676)
---|.+.-.+.. ...++|.||+ |+++|++++++|+|.+
T Consensus 200 -------------------------------------C~~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~g~G~~ 237 (366)
T PRK14294 200 -------------------------------------CKTCHGQGRVRV-SKTVQVKIPA----GVDTGSRLRLRGEGEA 237 (366)
T ss_pred -------------------------------------CCCCCCceEeec-ceeEEEecCC----CCcCCcEEEEccCccC
Confidence 012333333321 1247899999 9999999999999987
Q ss_pred cccccccccccceeccc
Q psy16387 249 VKKEKARVKLRKSYKTI 265 (676)
Q Consensus 249 ~~~~~~rGDL~V~~~V~ 265 (676)
...++.+|||+|++.++
T Consensus 238 ~~~~~~~GDl~v~i~v~ 254 (366)
T PRK14294 238 GVRGGPPGDLYVFLTVE 254 (366)
T ss_pred CCCCCCCCcEEEEEEEc
Confidence 65567789999999876
No 65
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.63 E-value=4.7e-08 Score=107.70 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=74.9
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.++.. .+
T Consensus 154 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~------C~---------- 212 (382)
T PRK14291 154 PRYVPCEACGGTGYDP-----GSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREP------CS---------- 212 (382)
T ss_pred eeeccCCCCccccCCC-----CCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccC------CC----------
Confidence 3467899999999641 12356799999999764 4799999999943211 11
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
-|.+.-.+.. ...++|.||+ |+..|++++++|+|-
T Consensus 213 ----------------------------------------~C~G~g~v~~-~~~l~V~Ip~----G~~~G~~i~~~g~G~ 247 (382)
T PRK14291 213 ----------------------------------------KCNGRGLVIK-KETIKVRIPP----GVDNGSKLRVPGKGH 247 (382)
T ss_pred ----------------------------------------CCCCCceEEe-eeEEEEEeCC----CCCCCCEEEEecCcC
Confidence 1222222221 1247899999 999999999999997
Q ss_pred ccccccccccccceecccc
Q psy16387 248 FVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~ 266 (676)
....++..|||+|++.++-
T Consensus 248 ~~~~g~~~GDL~v~i~~~~ 266 (382)
T PRK14291 248 AGRFGGPPGDLYIIVKVKP 266 (382)
T ss_pred CCCCCCCCccEEEEEEEcc
Confidence 6555677899999988763
No 66
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.61 E-value=4.8e-08 Score=108.15 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=76.2
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|... + ...+|+.|+|.|.+. ..+|+.|.|.|.+.... .+
T Consensus 162 r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C~------- 223 (397)
T PRK14281 162 KQVPCKECNGTGSKT---G---ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDR-----CP------- 223 (397)
T ss_pred eeecCCCCCCcccCC---C---CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCC-----CC-------
Confidence 467899999999642 1 246899999999764 35799999999653221 11
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
-|++...+.. ...++|+||+ |+++|++++++|
T Consensus 224 -------------------------------------------~C~G~g~v~~-~~~~~V~Ip~----G~~~G~~i~~~g 255 (397)
T PRK14281 224 -------------------------------------------ACYGEGIKQG-EVTVKVTVPA----GVQDGNYLTLRG 255 (397)
T ss_pred -------------------------------------------CCCCCccEec-ceEEEEecCC----CCCCCCEEEEec
Confidence 1333333321 1247899999 999999999999
Q ss_pred CccccccccccccccceecccccC
Q psy16387 245 HKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
+|.+...+...|||+|++.++--+
T Consensus 256 ~G~~~~~~~~~GDL~i~i~~~~h~ 279 (397)
T PRK14281 256 QGNAGPRGGAPGDLIVVIEEKPHE 279 (397)
T ss_pred ccccCCCCCCCCcEEEEEEEcCCC
Confidence 999876566789999998865433
No 67
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.58 E-value=8.3e-08 Score=105.31 Aligned_cols=105 Identities=20% Similarity=0.386 Sum_probs=76.1
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEE
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM 168 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl 168 (676)
....|+.|+|+|... + ...+|+.|+|+|.+. ..+|+.|.|.|.+.... .+
T Consensus 139 r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C~----------- 196 (369)
T PRK14288 139 YQSVCESCDGTGAKD---K---ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTP-----CQ----------- 196 (369)
T ss_pred eeccCCCCCCcccCC---C---CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcccc-----Cc-----------
Confidence 356899999999642 1 246799999999764 46899999999653221 11
Q ss_pred ccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccc
Q psy16387 169 NVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKF 248 (676)
Q Consensus 169 ~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p 248 (676)
-|.+...+..- ..++|.||+ |+++|++++++|+|.+
T Consensus 197 ---------------------------------------~C~G~g~v~~~-~~l~V~IP~----G~~~G~~i~l~g~G~~ 232 (369)
T PRK14288 197 ---------------------------------------ACKGKTYILKD-EEIDAIIPE----GIDDQNRMVLKNKGNE 232 (369)
T ss_pred ---------------------------------------cCCCcceEEEE-EEEEEecCC----CCCCCCEEEEccCccC
Confidence 12232222211 247899999 9999999999999987
Q ss_pred cccccccccccceecccccC
Q psy16387 249 VKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 249 ~~~~~~rGDL~V~~~V~~Pk 268 (676)
.. ++..|||+|++.|+.++
T Consensus 233 ~~-~~~~GDL~v~i~v~~h~ 251 (369)
T PRK14288 233 YE-KGKRGDLYLEARVKEDE 251 (369)
T ss_pred CC-CCCCCCEEEEEEEEECC
Confidence 54 46689999999987665
No 68
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=1.4e-07 Score=103.63 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=72.7
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|.... -....+|+.|+|+|.+. ..+|..|.|.|......
T Consensus 138 r~~~C~~C~G~G~~~~----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-------------- 199 (371)
T PRK14292 138 RLTECEHCHGSRTEPG----GKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDP-------------- 199 (371)
T ss_pred eeecCCCCcccccCCC----CCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCC--------------
Confidence 4677999999995311 11246799999999765 25799999998642110
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
.. -|.+.-.+.. ...++|.||+ |+++|++++++|
T Consensus 200 ----------------------------------------C~-~C~G~g~v~~-~~~~~V~Ip~----G~~~G~~i~~~G 233 (371)
T PRK14292 200 ----------------------------------------CT-VCRGRGRTLK-AETVKVKLPR----GIDEGYRIRVAG 233 (371)
T ss_pred ----------------------------------------CC-CCCCceEEee-cceEEEEECC----CCCCCcEEEEec
Confidence 01 1222222221 1247899999 999999999999
Q ss_pred CccccccccccccccceecccccC
Q psy16387 245 HKKFVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~~Pk 268 (676)
+|.+... + .|||+|+|.|+.++
T Consensus 234 ~G~~~~~-~-~GDL~v~i~v~~h~ 255 (371)
T PRK14292 234 MGNEGPG-G-NGDLYVHIEMEPHP 255 (371)
T ss_pred CcCCCCC-C-CCCEEEEEEEecCC
Confidence 9988532 2 39999999998776
No 69
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.47 E-value=2.2e-07 Score=103.42 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=74.1
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceeeeeeEEEEEeCCCCcCC
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFAQRQTITVPVPAGVEDG 163 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G 163 (676)
.....|+.|+|+|.. .+ ...+|+.|+|+|.++ ..+|+.|.|.|.+.....
T Consensus 148 ~r~~~C~~C~G~G~~---~~---~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~------------ 209 (421)
T PTZ00037 148 NKDVICANCEGHGGP---KD---AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESK------------ 209 (421)
T ss_pred eccccccccCCCCCC---CC---CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccc------------
Confidence 346789999999953 11 346899999999642 458999999996543110
Q ss_pred cEEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEc
Q psy16387 164 QTVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKT 243 (676)
Q Consensus 164 ~~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~ 243 (676)
.-.-|.+.-.+..- ..++|.||+ |+..|++++++
T Consensus 210 -----------------------------------------~C~~C~G~g~v~~~-~~l~V~Ip~----G~~dG~~I~~~ 243 (421)
T PTZ00037 210 -----------------------------------------KCKNCSGKGVKKTR-KILEVNIDK----GVPNQHKITFH 243 (421)
T ss_pred -----------------------------------------cCCcCCCcceeeee-eEEEEeeCC----CCCCCcEEEEe
Confidence 01123333333321 247999999 99999999999
Q ss_pred CCccccccccccccccceeccc
Q psy16387 244 GHKKFVKKEKARVKLRKSYKTI 265 (676)
Q Consensus 244 G~G~p~~~~~~rGDL~V~~~V~ 265 (676)
|+|-... ++..|||+|.+.++
T Consensus 244 G~Gd~~~-~~~pGDLiv~I~~~ 264 (421)
T PTZ00037 244 GEADEKP-NEIPGNVVFILNEK 264 (421)
T ss_pred cccCCCC-CCCCCcEEEEEEec
Confidence 9997643 46789999998865
No 70
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.32 E-value=7.1e-07 Score=94.96 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=62.0
Q ss_pred ccccCCCeeeeEeeCceeeecCcEEEeeecCC-eEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceeccccc
Q psy16387 189 FERDGPDIHSNAEISLSQAVLGGTIRIPGIYD-DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILP 267 (676)
Q Consensus 189 F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG-~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~P 267 (676)
+.|+|+|+++++.|+|.||++|+++.| ++++ .++|+||+ |+++|++++++|+|++. |||+|++.++.+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~----G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h 193 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPP----GVREGQVIRLAGKGRQG------GDLYLVVRLLPH 193 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCC----CcCCCcEEEECCCCCCC------CCEEEEEEEcCC
Confidence 458899999999999999999999998 6777 48999999 99999999999999863 999999998765
Q ss_pred C
Q psy16387 268 K 268 (676)
Q Consensus 268 k 268 (676)
+
T Consensus 194 ~ 194 (291)
T PRK14299 194 P 194 (291)
T ss_pred C
Confidence 5
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.17 E-value=1.6e-06 Score=85.84 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=46.5
Q ss_pred eeEeCCCCCCcceEec--ccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEc
Q psy16387 119 MRSTCRYCKGSRNLIK--NPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN 169 (676)
Q Consensus 119 ~~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~ 169 (676)
.+.+|+.|+|+|+++. .+|+.|+|.|+++.+....+++ .|+.+|++|++.
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 4788999999999997 7999999999999999999999 999999999976
No 72
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.06 E-value=5e-06 Score=89.13 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=61.3
Q ss_pred ccCCCeeeeEeeCceeeecCcEEEe----eecC--C--------eEEEEecCCCCcccCCCcEEEEcCCccccccccccc
Q psy16387 191 RDGPDIHSNAEISLSQAVLGGTIRI----PGIY--D--------DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARV 256 (676)
Q Consensus 191 R~G~DL~~~~~Isl~eAllG~~i~v----~tld--G--------~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rG 256 (676)
|+|.||++++.|+|.||+.|+..+| ++.+ | .++|+||+ |+++|++++++|+|++...+..+|
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~----G~~~G~~i~~~g~G~~~~~~~~~G 190 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPA----GVGNGQRIRLKGQGTPGENGGPNG 190 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECC----CCcCCcEEEEecCCcCCCCCCCCc
Confidence 5789999999999999999995544 4443 2 36888999 999999999999999976667789
Q ss_pred cccceecccccC
Q psy16387 257 KLRKSYKTILPK 268 (676)
Q Consensus 257 DL~V~~~V~~Pk 268 (676)
||+|++.|. |.
T Consensus 191 Dl~v~i~v~-ph 201 (306)
T PRK10266 191 DLWLVIHIA-PH 201 (306)
T ss_pred cEEEEEEEc-CC
Confidence 999999987 54
No 73
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.82 E-value=9.9e-06 Score=90.65 Aligned_cols=69 Identities=22% Similarity=0.555 Sum_probs=50.3
Q ss_pred eecCCCCCCCcCCCCcceeccccCceeEEEEe---------e----CCceeeEeCCCCCCcceE-ecccCCCCCCCceee
Q psy16387 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETIS---------T----GPFVMRSTCRYCKGSRNL-IKNPCTTCDGKGQFA 147 (676)
Q Consensus 82 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~---------~----G~~~~~~~C~~C~G~G~~-i~~~C~~C~G~G~v~ 147 (676)
..|+.|+|+|... .....|+.|+|+|..... . +.+....+|+.|+|+|.+ +...|+.|+|.|.+.
T Consensus 3 ~~C~~C~g~G~i~-v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIV-VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEe-eeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 4799999998764 346779999999965211 0 111235699999999998 468999999998765
Q ss_pred eeeE
Q psy16387 148 QRQT 151 (676)
Q Consensus 148 ~~~~ 151 (676)
.-.+
T Consensus 82 ~c~~ 85 (715)
T COG1107 82 TCDI 85 (715)
T ss_pred eecc
Confidence 5443
No 74
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=97.75 E-value=0.0001 Score=63.59 Aligned_cols=39 Identities=28% Similarity=0.600 Sum_probs=29.2
Q ss_pred eEEEEEeCCCCcCCcEEEEcc-c-------cCCccEEEEEEEecCCC
Q psy16387 150 QTITVPVPAGVEDGQTVRMNV-G-------KSKKEIYITFRVEKSDI 188 (676)
Q Consensus 150 ~~l~V~IP~Gv~~G~~irl~g-G-------~~~GDL~v~i~vk~h~~ 188 (676)
+.++|+||+|+++|++++++| | +..|||||++++.-...
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ 73 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKK 73 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SS
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCC
Confidence 578899999999999999997 2 26899999999984443
No 75
>KOG0714|consensus
Probab=97.64 E-value=0.00052 Score=71.41 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=84.9
Q ss_pred eeeeEEEEEeCCCCcCCcEEEEccc------cCCccEEEEEEEecCCCccccCCCeeee--EeeCceeeecCcEEEeeec
Q psy16387 147 AQRQTITVPVPAGVEDGQTVRMNVG------KSKKEIYITFRVEKSDIFERDGPDIHSN--AEISLSQAVLGGTIRIPGI 218 (676)
Q Consensus 147 ~~~~~l~V~IP~Gv~~G~~irl~gG------~~~GDL~v~i~vk~h~~F~R~G~DL~~~--~~Isl~eAllG~~i~v~tl 218 (676)
.......+.+++++..|+.+..+.. ..+-++++.+..++|+.|.|++++|... ..|++.+|++|....++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~ 276 (306)
T KOG0714|consen 197 SRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTL 276 (306)
T ss_pred CccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecc
Confidence 3457788999999999999998862 4688999999999999999999999999 9999999999999999998
Q ss_pred CCe-EEEEec-CCCCcccCCCcEEEEcCCcccc
Q psy16387 219 YDD-QTVLFL-EQGSVKLSSHQIMVKTGHKKFV 249 (676)
Q Consensus 219 dG~-~~v~Ip-~~~~~gt~~g~~lrl~G~G~p~ 249 (676)
++. ..+.+. . ...++...++++.|+|.
T Consensus 277 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 277 DGRSYSLSINKD----LIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCccccCccccc----ccCCCceeeecCCCCCC
Confidence 875 333333 3 56899999999999874
No 76
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.22 E-value=0.0002 Score=59.44 Aligned_cols=42 Identities=38% Similarity=0.887 Sum_probs=30.3
Q ss_pred ccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCCCCCCceee
Q psy16387 101 CHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTTCDGKGQFA 147 (676)
Q Consensus 101 C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~ 147 (676)
|+.|+|+|.. +.....+|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 1 C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAK-----PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB------STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccC-----CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 8999999974 334567999999999875 37999999999875
No 77
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.92 E-value=0.0024 Score=57.16 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=82.3
Q ss_pred hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhc
Q psy16387 318 AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMS 397 (676)
Q Consensus 318 ~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMT 397 (676)
+.|+-+|.+|...-..-+.. +..++..|++-+...+.|.|..||-++.+.|-.|.... .+.+-+||+-+.-.++.-+.
T Consensus 1 n~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA-RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred CchhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 46999999999986666643 68899999999999999999999999999998887644 45666799999999999999
Q ss_pred ccchhhccccHHHHHHHHH
Q psy16387 398 HLDAGVREDSLLIIDVLLE 416 (676)
Q Consensus 398 Hi~~~Ir~dsl~~Ld~ll~ 416 (676)
=..++||.-| .+||.||+
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999999888 88888875
No 78
>KOG0712|consensus
Probab=96.77 E-value=0.0026 Score=68.54 Aligned_cols=99 Identities=26% Similarity=0.666 Sum_probs=65.3
Q ss_pred ecCCCCCCCcC-------CC---CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec--------ccC-------
Q psy16387 83 TCTRCHGEKCE-------PG---TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK--------NPC------- 137 (676)
Q Consensus 83 ~C~~C~GtG~~-------~g---~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~--------~~C------- 137 (676)
.|..|.|+|.. +| .....|..|+|+|.. ......|+.|.|++.+-. .+|
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~------~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki 218 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET------ISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKI 218 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccc------ccccccCcccccchhhhhhheeeccccCCCccccee
Confidence 79999999964 22 347789999999964 234678999999973310 111
Q ss_pred ----------------------------------------------CCCCCCceee--eeeEEEEEeCCC--CcCCcEEE
Q psy16387 138 ----------------------------------------------TTCDGKGQFA--QRQTITVPVPAG--VEDGQTVR 167 (676)
Q Consensus 138 ----------------------------------------------~~C~G~G~v~--~~~~l~V~IP~G--v~~G~~ir 167 (676)
.-|.+..... .-+.+++.++|| +.+|++.+
T Consensus 219 ~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~ 298 (337)
T KOG0712|consen 219 TFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR 298 (337)
T ss_pred eeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence 2233222222 225678888888 78888888
Q ss_pred Ecc-c-----cCCccEEEEEEEecCC
Q psy16387 168 MNV-G-----KSKKEIYITFRVEKSD 187 (676)
Q Consensus 168 l~g-G-----~~~GDL~v~i~vk~h~ 187 (676)
+++ | .+.|||||.++|+-.+
T Consensus 299 v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 299 VEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred ecCCCcccccCCCCcEEEEEEEEcCC
Confidence 886 2 2478888888887443
No 79
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.77 E-value=0.013 Score=57.91 Aligned_cols=137 Identities=17% Similarity=0.229 Sum_probs=94.3
Q ss_pred CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhh
Q psy16387 316 NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACA 395 (676)
Q Consensus 316 n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~A 395 (676)
|+.+|..++..+-|+...||. ++.. .++.+...+.|.+..||++++..|..++. .+.+++- ..++..+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k-~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-LVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVK-GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-HHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeeh-hhhhHHHHHH
Confidence 467999999999999999993 4444 56666677889999999999999988743 3333333 3344444456
Q ss_pred hcccchhhccccHHHHHHHHHh-CCccchhhhhhhhHHHHHhcccccccccceeeEEecCCCcchhHHHHHHHHHHHHHH
Q psy16387 396 MSHLDAGVREDSLLIIDVLLEQ-CPILTANYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSML 474 (676)
Q Consensus 396 MTHi~~~Ir~dsl~~Ld~ll~~-~p~l~~~~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~~~R~kvL~~L~~fL 474 (676)
+.=-+++||..|..++.-++.. .| ..+.++|.++|+.-........ . +..+.+.|.+++.-|-.|+
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~------~~i~~~~~e~i~~l~~~~~~~~--~-----~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNP------NIIYNNFPELISSLNNCYEHPV--Y-----GPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHhCcccccc--c-----cccCHHHHHHHHHHHHHHc
Confidence 6788899999999999988888 77 5556777777775443321110 1 2234566666665544444
No 80
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.57 E-value=0.0076 Score=59.52 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=85.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..+...|++-++.||+.||.-|..++...... .-+.++..++.++.|.+..||+.+..+|..+.....++.+..+
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~ 102 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNN 102 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 456788999999999999999999999887742 3345567777788999999999999999999887678888888
Q ss_pred HHHHHHHHhhhhcccch--hhccccHHHHHHHHHhCC
Q psy16387 385 FEIVVRYLACAMSHLDA--GVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~--~Ir~dsl~~Ld~ll~~~p 419 (676)
++-++.+++.-..|-.. .=+++--.+++.|+++.+
T Consensus 103 ~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 103 FPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 88888888887665322 223333455555566555
No 81
>KOG2813|consensus
Probab=96.19 E-value=0.0045 Score=65.28 Aligned_cols=31 Identities=42% Similarity=0.915 Sum_probs=17.9
Q ss_pred eCCCCCCcceEecccCCCCCCCceeeeeeEEEEE
Q psy16387 122 TCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVP 155 (676)
Q Consensus 122 ~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~ 155 (676)
+|++|+|+|. .+|.+|.|.|-...-..+.|.
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence 4555555553 477777777766555444443
No 82
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.0042 Score=70.24 Aligned_cols=57 Identities=28% Similarity=0.660 Sum_probs=40.6
Q ss_pred eeecCCCCCCCcCCC------------------CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec--------
Q psy16387 81 MDTCTRCHGEKCEPG------------------TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK-------- 134 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g------------------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-------- 134 (676)
...|+.|+|+|.... ..-..|+.|+|+|.++ ...+|+.|.|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-------v~~~c~~c~G~gkv~~c~~cG~~~ 90 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-------VYDTCPECGGTGKVLTCDICGDII 90 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-------EEeecccCCCceeEEeecccccee
Confidence 456999999995421 0144799999999874 3578999999998752
Q ss_pred c-----cCCCCCCCc
Q psy16387 135 N-----PCTTCDGKG 144 (676)
Q Consensus 135 ~-----~C~~C~G~G 144 (676)
. -|+.|.-++
T Consensus 91 ~~~~~~lc~~c~~~~ 105 (715)
T COG1107 91 VPWEEGLCPECRRKP 105 (715)
T ss_pred cCcccccChhHhhCC
Confidence 2 288887544
No 83
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=96.09 E-value=0.0075 Score=70.66 Aligned_cols=77 Identities=8% Similarity=-0.000 Sum_probs=60.6
Q ss_pred CCCccccCCCeeeeEeeCceeeecCcEEEeee----c--CC--------eEEEEecCCCCcccCCCcEEEEcCCcccccc
Q psy16387 186 SDIFERDGPDIHSNAEISLSQAVLGGTIRIPG----I--YD--------DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKK 251 (676)
Q Consensus 186 h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~t----l--dG--------~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~ 251 (676)
.+++....-||.+.+.|+|.++..|+..+|.. . +| .+.|+||+ |+..|+++|++|+|-..
T Consensus 649 ~~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPp----GVkdGqkIRf~GeGDeg-- 722 (871)
T TIGR03835 649 EPNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPI----TSQLNISAIFKGFGHDF-- 722 (871)
T ss_pred CCCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCC----CCCCCCEEEeccccCCC--
Confidence 35555667799999999999999999988832 2 11 36899999 99999999999999764
Q ss_pred ccccccccceecccccC
Q psy16387 252 EKARVKLRKSYKTILPK 268 (676)
Q Consensus 252 ~~~rGDL~V~~~V~~Pk 268 (676)
.+..|||+|.+.++.-+
T Consensus 723 pgg~GDLyVvIkVKPHp 739 (871)
T TIGR03835 723 GNGCGDLKVVFKVIPSN 739 (871)
T ss_pred CCCCCCEEEEEEEcCCC
Confidence 22349999998876444
No 84
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.97 E-value=0.074 Score=53.94 Aligned_cols=166 Identities=11% Similarity=0.123 Sum_probs=101.2
Q ss_pred CchhhHHHHHHHHHHHHHH--cC-Ccch-hhhhhh--hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHH
Q psy16387 272 VTNTEFKVKRIVIREQLKE--RG-ENEL-LSVQRK--LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSS 345 (676)
Q Consensus 272 lTdt~fksk~i~l~~q~~~--~~-~~~~-~~~~r~--l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~ 345 (676)
.++.+++.+..+|.+.... .+ .... ...... ..+.-+...+.+-+.++-+.|+.-++++...-.. ....++..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~-~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS-HFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG-GGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH-hHHHHHHH
Confidence 3667777777777665432 11 1110 000011 0112344556777788999999999999866554 36778889
Q ss_pred HHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc--ch
Q psy16387 346 ILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL--TA 423 (676)
Q Consensus 346 il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l--~~ 423 (676)
+++.++.++.|..+.||+++...|..+...++ ..-.++..++..+++|=++.||.-++.+|..+++..|.- .-
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 99999999999999999999999999988665 233455888999999999999999999999999999921 11
Q ss_pred hhhhhhhHHHHHhccccccc
Q psy16387 424 NYRSLLPHFLDMISSQTRSH 443 (676)
Q Consensus 424 ~~~k~l~~f~~lls~~~~~~ 443 (676)
.....++.+...|...-.+.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~ 189 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA 189 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS
T ss_pred cccchHHHHHHHHHHHCCCC
Confidence 12234455666665554443
No 85
>KOG2023|consensus
Probab=95.84 E-value=0.068 Score=61.71 Aligned_cols=163 Identities=15% Similarity=0.268 Sum_probs=120.1
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhh
Q psy16387 271 NVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSV 350 (676)
Q Consensus 271 nlTdt~fksk~i~l~~q~~~~~~~~~~~~~r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~ 350 (676)
|.-+-.|++.....++-...-+.+ .++-+-+.-+.-+|.-.+|+|++.|.+|+.-+-+.+-..+. .+-.|+...++.+
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~-~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~l 220 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSD-VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEIL 220 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhh-cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHH
Confidence 445566777665555444322221 11111223366778888999999999999999999977774 4678999999999
Q ss_pred hcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhC--Ccc-chhhhh
Q psy16387 351 SPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC--PIL-TANYRS 427 (676)
Q Consensus 351 ~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~--p~l-~~~~~k 427 (676)
-.|..|.+..||+++-..|-.++. +-++.|.||.+-++=|+.---+--+..|-..|-.|.-.+-|.- +.. ..+..|
T Consensus 221 FalanD~~~eVRk~vC~alv~Lle-vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 221 FALANDEDPEVRKNVCRALVFLLE-VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHH-hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 999999999999999999988888 7889999999999999888888888888888888877666652 222 234456
Q ss_pred hhhHHHHHh
Q psy16387 428 LLPHFLDMI 436 (676)
Q Consensus 428 ~l~~f~~ll 436 (676)
|.|-.+.=|
T Consensus 300 liPvLl~~M 308 (885)
T KOG2023|consen 300 LIPVLLSGM 308 (885)
T ss_pred HHHHHHccC
Confidence 666655433
No 86
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.82 E-value=0.0052 Score=56.30 Aligned_cols=39 Identities=36% Similarity=0.768 Sum_probs=22.7
Q ss_pred ecCCCCCCCcCC----C--CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceE
Q psy16387 83 TCTRCHGEKCEP----G--TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNL 132 (676)
Q Consensus 83 ~C~~C~GtG~~~----g--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 132 (676)
.|+.|+|+|... + .....|+.|+|+|.. .|+.|.|+|.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-----------~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-----------TCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-----------eCCCCCCCEEE
Confidence 577777766431 1 124567777777642 37777777665
No 87
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.65 E-value=0.018 Score=51.23 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=76.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHH-HHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh--
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFS-SILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL-- 381 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~-~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i-- 381 (676)
++.++..+++.+..+|..|+.-|..+....|.. ...... .+++.+++++.|.+..||..++..|..+....++...
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDN-IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 566788889999999999999999988766642 233333 7888999999999999999999999988764332111
Q ss_pred --cccHHHHHHHHhhhhcccchhhccccHHHHHHHH
Q psy16387 382 --APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLL 415 (676)
Q Consensus 382 --~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll 415 (676)
...++.++-++ -.-+.++|+.++.+|.-|.
T Consensus 88 ~~~g~l~~l~~~l----~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLL----DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHH----hcCCHHHHHHHHHHHHHhh
Confidence 11344444444 3337788888888876553
No 88
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.42 E-value=0.067 Score=54.25 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=84.0
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHH-HHhhhcccccCChHHHHHHHHHHHHHhccCC--hhh
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSI-LDSVSPLMLDISATTRKAAVKLLSAMFSQVT--EEE 380 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~i-l~~~~~li~D~~~~VR~~l~~ll~~l~~~~~--~~~ 380 (676)
-+..+|.++.+.+..+|..|..-|..++...+ +...+ +..+.+.+.+.++.||..++.+|..++...+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 46778888999999999999999999996544 12234 7788888999999999999999999999888 566
Q ss_pred hccc--HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 381 LAPL--FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 381 i~p~--~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
+... ++.+..-|..+++.-+++||..|-..+..|.+++|.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 6664 477999999999999999999999999999999994
No 89
>KOG2813|consensus
Probab=94.94 E-value=0.015 Score=61.50 Aligned_cols=24 Identities=33% Similarity=0.890 Sum_probs=19.0
Q ss_pred eEeCCCCCCcceEecccCCCCCCCcee
Q psy16387 120 RSTCRYCKGSRNLIKNPCTTCDGKGQF 146 (676)
Q Consensus 120 ~~~C~~C~G~G~~i~~~C~~C~G~G~v 146 (676)
...|..|+|+|. .+|++|.|+|..
T Consensus 234 ~~~C~~C~G~G~---~~C~tC~grG~k 257 (406)
T KOG2813|consen 234 HDLCYMCHGRGI---KECHTCKGRGKK 257 (406)
T ss_pred cchhhhccCCCc---ccCCcccCCCCc
Confidence 456888888886 589999999853
No 90
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=94.36 E-value=0.024 Score=56.59 Aligned_cols=29 Identities=34% Similarity=0.761 Sum_probs=14.6
Q ss_pred ceeccccCceeEEEEeeCCceeeEeCCCCCCcceE
Q psy16387 98 AQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNL 132 (676)
Q Consensus 98 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 132 (676)
..+|+.|+|+|.+.. ...+|+.|+|+|++
T Consensus 99 ~~~C~~C~G~G~~i~------~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQR------RQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEec------CCCCCCCCCCccEE
Confidence 445555556554421 01356666666654
No 91
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.96 E-value=0.22 Score=56.62 Aligned_cols=124 Identities=18% Similarity=0.360 Sum_probs=89.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..+...+.|-++.|||.|+..+..+....|. ..+.. +++.+..++.|.+..|+.+++.++..+ ..+++...++
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~ 189 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhh
Confidence 34566677899999999999999999999884 33332 688888888999999999999999988 4555554467
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhc
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMIS 437 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls 437 (676)
++.+.-.+...+...++-+|. ++|++|-.++|.....- ..+++....+|.
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~---~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~ 241 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQI---KILRLLRRYAPMEPEDADKNRIIEPLLNLLQ 241 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHH---HHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccchHHHH---HHHHHHHhcccCChhhhhHHHHHHHHHHHhh
Confidence 777777766666666666654 45555556666443333 456666666666
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.90 E-value=0.054 Score=42.61 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=45.3
Q ss_pred hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHH
Q psy16387 318 AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSA 371 (676)
Q Consensus 318 ~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~ 371 (676)
.+|..|+..|-++....| .....++..+++.+.+++.|.+..||.++...|..
T Consensus 2 ~vR~~A~~aLg~l~~~~~-~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCP-ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTH-HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 589999999988666666 45678999999999999999999999999887753
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.61 E-value=0.14 Score=45.86 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=57.1
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~ 373 (676)
++.+|..+.+.++.||--|...|-++.......++ .|...|...+..++.|.|.+||.++ .+|..++
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 67788899999999999999999998877765554 4999999999999999999999998 5665543
No 94
>KOG0715|consensus
Probab=93.26 E-value=0.064 Score=57.28 Aligned_cols=100 Identities=21% Similarity=0.365 Sum_probs=68.0
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEE
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~ir 167 (676)
.....|.+|.|.|.. +......|..|.|+|.+. ..+|..|.|.|.+....
T Consensus 162 ~~~~~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~----------------- 219 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAE-----EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDN----------------- 219 (288)
T ss_pred EeecccccccCcCcc-----cccccccchhhhCcccccccccCCcceeecccccccceeccch-----------------
Confidence 346789999999943 456788999999999332 13599999988655432
Q ss_pred EccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcc
Q psy16387 168 MNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKK 247 (676)
Q Consensus 168 l~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~ 247 (676)
.++..|.. .|.. ...+.|.+|+ ++..+.+++++|.|-
T Consensus 220 -------------------------------------c~~~~g~~-~v~~-~k~i~i~~~~----g~~~~~~l~~~~~~~ 256 (288)
T KOG0715|consen 220 -------------------------------------CQACSGAG-QVRR-AKDIMIVLPA----GVRSADTLRFAGHGN 256 (288)
T ss_pred -------------------------------------HHHhhcch-hhhh-heeEEeecCc----ccccccEEEEecCCc
Confidence 01112222 1211 1247888999 999999999999873
Q ss_pred ccccccccccccceecccccC
Q psy16387 248 FVKKEKARVKLRKSYKTILPK 268 (676)
Q Consensus 248 p~~~~~~rGDL~V~~~V~~Pk 268 (676)
. +|+|.+.|..-+
T Consensus 257 ~--------~l~v~~~v~~~~ 269 (288)
T KOG0715|consen 257 D--------DLFVRLIVAKSP 269 (288)
T ss_pred c--------eEEEEEEeccCc
Confidence 2 888887765443
No 95
>KOG2956|consensus
Probab=92.41 E-value=0.65 Score=52.11 Aligned_cols=119 Identities=20% Similarity=0.286 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHhccC-CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc-CChHHHHHHHHHHHHHhccCCh
Q psy16387 301 RKLSVKELMSRLRHN-NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD-ISATTRKAAVKLLSAMFSQVTE 378 (676)
Q Consensus 301 r~l~lk~lLs~l~h~-n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D-~~~~VR~~l~~ll~~l~~~~~~ 378 (676)
+..-++++|..++.+ .+..|++||..|..++....-.+...|...||..+.+.+.| .+...|+.++++|+.++...|+
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 334478889999877 88899999999999998887779999999999999999999 8999999999999999886654
Q ss_pred hhhcccHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 379 EELAPLFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 379 ~~i~p~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
. +....+ .++-.|-+|-+--..-+|.-+=..+-+|-.|.|.
T Consensus 364 ~-l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 364 R-LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred h-hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 3 333333 3555666666655555555555555666677773
No 96
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.27 E-value=1 Score=44.08 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=89.4
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc-CChHHHHHHHHHHHHHhccC---C---hhh
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD-ISATTRKAAVKLLSAMFSQV---T---EEE 380 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D-~~~~VR~~l~~ll~~l~~~~---~---~~~ 380 (676)
+.+.++..++..|-.++.=++-.+...+.+++..|.+..+..+...+-. +...+.+++...|..|+..+ | .+.
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 5677889999999999999999999986678889999999999888885 56778999999998777522 2 255
Q ss_pred hcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh
Q psy16387 381 LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN 424 (676)
Q Consensus 381 i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~ 424 (676)
..|+.+-++-.+..-+.- +.+...++..|.-|+.+||...+.
T Consensus 110 ~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp 151 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP 151 (165)
T ss_pred hhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence 677776665544332221 588999999999999999975443
No 97
>KOG2023|consensus
Probab=92.02 E-value=0.46 Score=55.19 Aligned_cols=99 Identities=15% Similarity=0.285 Sum_probs=87.3
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc-cCChhhhc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS-QVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~-~~~~~~i~ 382 (676)
-+..++.+..+-++.|||..-+.|.-++.-+|.. +.+|+..|++=.+-+..|.|..|--++-.++.+++. .++.+.+.
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 3567777788899999999999999899888954 678999999999999999999999999999998883 58899999
Q ss_pred ccHHHHHHHHhhhhcccchhh
Q psy16387 383 PLFEIVVRYLACAMSHLDAGV 403 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~I 403 (676)
||.+-++.-+.++|---..||
T Consensus 295 p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 295 PYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHHHHccCccccccH
Confidence 999999999999998766554
No 98
>KOG2171|consensus
Probab=91.02 E-value=0.98 Score=55.37 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=100.6
Q ss_pred HHHHH-hccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 307 ELMSR-LRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 307 ~lLs~-l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
+++.+ +.+-+.+.|+.||.-|--+-.--+ ..+..++..|++-+++.+.|.+..||-|+.+.+.-+-.-..++.-+-|-
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 34444 588899999999999988886665 4667899999999999999999999999999998776666666666566
Q ss_pred HHHHHHHhh-hhcccchhhccccHHHHHHHHHhCCc-c-chhhhhhhh-HHHHHhcccc
Q psy16387 386 EIVVRYLAC-AMSHLDAGVREDSLLIIDVLLEQCPI-L-TANYRSLLP-HFLDMISSQT 440 (676)
Q Consensus 386 ~~l~~~i~~-AMTHi~~~Ir~dsl~~Ld~ll~~~p~-l-~~~~~k~l~-~f~~lls~~~ 440 (676)
+.+..=+-. -++--.+.|+..|-.-|.=+.+.||. . -.+...+++ .|..++...+
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~ 488 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSK 488 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 665533333 34455669999999999999999993 3 345566777 5555555444
No 99
>KOG0915|consensus
Probab=90.49 E-value=0.94 Score=56.96 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=111.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc----cCCh--
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS----QVTE-- 378 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~----~~~~-- 378 (676)
++|||..+...-=.||-.+-.-|.|+|..+|.+-...++-.|...+-+.+=|...+||.|.-++.+.+.. .++.
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 7888888887777899999999999999999876778899999999999999999999999888876543 2222
Q ss_pred -hhhcccHHHHHHHHh-hhhcccchhhccccHHHHHHHHHhCCcc-chhhhhhhhHHHHHhccccc
Q psy16387 379 -EELAPLFEIVVRYLA-CAMSHLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMISSQTR 441 (676)
Q Consensus 379 -~~i~p~~~~l~~~i~-~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f~~lls~~~~ 441 (676)
..=.-+++.++.|+- -+|-|=+++||+-|+..|--|.+++|.. ..+..++++.+++..|..-+
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 222346666777664 3455999999999999999999999964 56678999999988876543
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.13 E-value=1.3 Score=49.54 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=99.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc--------ch----hhcHHHHHHhhhcccccCChHHHHHHHHHHHHH
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS--------VI----KSHFSSILDSVSPLMLDISATTRKAAVKLLSAM 372 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~--------~~----~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l 372 (676)
+..++..+.| +.+...|..++.=++.-.|.. +- +.-...+++.+...+-+.+..+|...+..|..+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 3456676766 677888888888888663321 11 112334556666666666777999999999999
Q ss_pred hccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh-hhhhhhHHHH
Q psy16387 373 FSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLD 434 (676)
Q Consensus 373 ~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~ 434 (676)
++.+|.+.+.++++-++.-+.-|++--+++||..+|..|..+++..|.+... -..+++.++.
T Consensus 351 l~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 351 LKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987654 3456666554
No 101
>KOG2032|consensus
Probab=89.96 E-value=1.3 Score=50.17 Aligned_cols=114 Identities=14% Similarity=0.230 Sum_probs=101.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccC-ChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDI-SATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~-~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..+..+.++.|++.|..|+.+|-...+--|.. ...|...++.+++.-+.|. +.+|-.++++.|..+.+++...++.+
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k-v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~ 338 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDK-VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES 338 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCcHH-HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence 556677889999999999999999999888854 5789999999999999876 78999999999999999999999999
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
++--+..-++.-----.++.|..|.-.+..|..++.
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 988778878777777789999999999999999888
No 102
>KOG1242|consensus
Probab=88.61 E-value=1.1 Score=51.79 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=70.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..+|.-+...+=.++..++..|--+...-| ..+...+..|++.+...+.|..+.||+|....|..+...+....|.+|
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ 334 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI 334 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3444555544444578888888887777777 567899999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy16387 385 FEIVVR 390 (676)
Q Consensus 385 ~~~l~~ 390 (676)
.+.++=
T Consensus 335 ip~Lld 340 (569)
T KOG1242|consen 335 IPTLLD 340 (569)
T ss_pred HHHHHH
Confidence 998765
No 103
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.49 E-value=1.1 Score=55.34 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=69.2
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
++..|+..|++-++.||+.|+..|.++- +.. .++.+.+++.|.+..||.++...|..+....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~~~--------~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT---PPG--------FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc---chh--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch----
Confidence 4567889999999999999999999875 322 5667777889999999999999998886534322
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
+ .+..++.+-++.||..++..|..+
T Consensus 687 --~----~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 687 --P----ALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred --H----HHHHHhcCCCHHHHHHHHHHHHhh
Confidence 2 233456678889999988877654
No 104
>KOG1824|consensus
Probab=88.27 E-value=1.4 Score=53.12 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=99.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCC--hHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDIS--ATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~--~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
++.+=.+++..+.++|...+.-|++++...| ..+..|+..++++|+-.+.|.+ ...+-..+.+|..++...+++.+.
T Consensus 437 Vkai~~qlr~ks~kt~~~cf~lL~eli~~lp-~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 437 VKAIQKQLREKSVKTRQGCFLLLTELINVLP-GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHhCc-chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 4455567888999999999999999999999 5788999999999999999985 457778888888888889999999
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
||.+.++.-+..|.-.-...|-..||.+..-|.++.
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988888873
No 105
>KOG1820|consensus
Probab=87.98 E-value=3.9 Score=49.62 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=113.1
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHH--HHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHH
Q psy16387 271 NVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELM--SRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILD 348 (676)
Q Consensus 271 nlTdt~fksk~i~l~~q~~~~~~~~~~~~~r~l~lk~lL--s~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~ 348 (676)
.+.+..||-+.++|.+....-.+..........++-..+ ..+++-|.++-.-|+..|..+-...+. .-..+...+.+
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~-~~~~~~~~v~p 339 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP-LFRKYAKNVFP 339 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch-hhHHHHHhhcc
Confidence 457888999999999887532221100011222222222 334677888999999999999988774 34667788889
Q ss_pred hhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc-cc-hh-h
Q psy16387 349 SVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI-LT-AN-Y 425 (676)
Q Consensus 349 ~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~-l~-~~-~ 425 (676)
.+...+-|.-+.+|+++++.++.++...+ ..-++-+|..||+|..|.+|.--+.+|++.+...+. .+ .. .
T Consensus 340 ~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 340 SLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred hHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 99999999999999999999999988444 444566777899999999999999999999999984 22 22 3
Q ss_pred hhhhhHHHHHh
Q psy16387 426 RSLLPHFLDMI 436 (676)
Q Consensus 426 ~k~l~~f~~ll 436 (676)
..+.+.-+..+
T Consensus 413 ~~l~p~~~~~~ 423 (815)
T KOG1820|consen 413 KTLVPHLIKHI 423 (815)
T ss_pred HHHhHHHhhhc
Confidence 34444444433
No 106
>KOG1248|consensus
Probab=87.78 E-value=1.1 Score=55.08 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc
Q psy16387 277 FKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD 356 (676)
Q Consensus 277 fksk~i~l~~q~~~~~~~~~~~~~r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D 356 (676)
+.+-...+-+|....+..- . .++ +...-.-+..-+..+|+.|+..++-++...|...+..|+-.||+++..++-|
T Consensus 806 Ivai~~il~e~~~~ld~~~---l-~~l-i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDET---L-EKL-ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHHHHHHHHHHhccccHHH---H-HHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence 5555555655554332211 1 111 2333344677889999999999999999999888899999999999999999
Q ss_pred CChHHHHHHHHHHHHHhccCChhhhcccHHH
Q psy16387 357 ISATTRKAAVKLLSAMFSQVTEEELAPLFEI 387 (676)
Q Consensus 357 ~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~ 387 (676)
....||.+...||..+..+...+.+.+|+|-
T Consensus 881 ~k~~~r~Kvr~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 881 HKIKVRKKVRLLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHhhCHH
Confidence 9999999999999999999999999999985
No 107
>KOG2824|consensus
Probab=87.78 E-value=0.7 Score=48.58 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=13.9
Q ss_pred eccccCceeEEEEeeCCceeeEeCCCCCCcce
Q psy16387 100 KCHYCNGTGLETISTGPFVMRSTCRYCKGSRN 131 (676)
Q Consensus 100 ~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 131 (676)
.|..|+|+=.+..+-++.-...+|+.|+-.|-
T Consensus 242 pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGL 273 (281)
T KOG2824|consen 242 PCSNCHGSCKVHEEEEDDGGVLRCLECNENGL 273 (281)
T ss_pred ecCCCCCceeeeeeccCCCcEEECcccCCCCc
Confidence 35555555443332222223444555555543
No 108
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=87.68 E-value=5.5 Score=45.29 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=90.4
Q ss_pred chhhHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhc
Q psy16387 273 TNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSP 352 (676)
Q Consensus 273 Tdt~fksk~i~l~~q~~~~~~~~~~~~~r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~ 352 (676)
..+++..||+.---...-....+. .-.+....+...+.|.|+-+|--||.-|-.+- .| ..+..+++.+..
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~---~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~-----~~~~~l~~~v~~ 121 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPE---LLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TP-----EMAEPLIPDVIK 121 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SH-----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--cc-----chhhHHHHHHHH
Confidence 456677777665433322222221 14455677788899999999999999999876 22 345668999999
Q ss_pred ccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 353 LMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 353 li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
++.|.+..||+.++-.+..++.. .++.+.+. ++-.+...+..-++.|+..|+.+|.-+
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 99999999999888888777764 55555553 344455566666789999999888877
No 109
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.99 E-value=2.8 Score=37.26 Aligned_cols=77 Identities=23% Similarity=0.237 Sum_probs=64.2
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+++..++.+.+--..+|-.||..|++++.++. ....+...|+.-....+.|.|.=|--++++.|..++...|.+.+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 46777888999999999999999999998876 224677888998999999999999999999999888766654443
No 110
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.25 E-value=0.44 Score=58.56 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=12.8
Q ss_pred ceeccccCceeEEEEeeCCc
Q psy16387 98 AQKCHYCNGTGLETISTGPF 117 (676)
Q Consensus 98 ~~~C~~C~G~G~~~~~~G~~ 117 (676)
.-.|+.|.|.|++...++.+
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~ 755 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFL 755 (924)
T ss_pred CCCCCCCccceEEEEEccCC
Confidence 35677777777766555543
No 111
>PTZ00429 beta-adaptin; Provisional
Probab=86.21 E-value=5.6 Score=48.05 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=66.6
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHH
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEI 387 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~ 387 (676)
+...+.|.|+-|||.|+..+-.+...+|.. + .-..+++.+..++.|.+..|...++.+|.+|.+..| +.+.+ ...
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pel-v--~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~-~~l~l-~~~ 219 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQL-F--YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS-EKIES-SNE 219 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCccc-c--cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc-hhhHH-HHH
Confidence 345578999999999999999999888842 2 122355566667899999999999999999876443 22322 122
Q ss_pred HHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 388 VVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 388 l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.+.++..++....+=-| +.+|++|..+.|
T Consensus 220 ~~~~Ll~~L~e~~EW~Q---i~IL~lL~~y~P 248 (746)
T PTZ00429 220 WVNRLVYHLPECNEWGQ---LYILELLAAQRP 248 (746)
T ss_pred HHHHHHHHhhcCChHHH---HHHHHHHHhcCC
Confidence 22333333333333333 255555555555
No 112
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.17 E-value=0.8 Score=34.65 Aligned_cols=41 Identities=32% Similarity=0.418 Sum_probs=31.7
Q ss_pred HHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHH
Q psy16387 326 GLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLL 369 (676)
Q Consensus 326 gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll 369 (676)
.|-.++...|. + .....+++.+...+.|.+..||+|++.+|
T Consensus 2 ~l~~iv~~dp~-l--l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPT-L--LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcc-c--cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35566667774 3 23347999999999999999999999875
No 113
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.83 E-value=2 Score=49.44 Aligned_cols=108 Identities=21% Similarity=0.130 Sum_probs=75.3
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
.+..-+.|.++.+|.-|+..|..++......+....=..++..++-++.|.|..|.+++.++|..++. .++..=..|-+
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~ 159 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDS 159 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCc
Confidence 33445799999999999999998885443211112224588889999999999999999999999976 33222112222
Q ss_pred HHHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
-+...+...|.+-+..||. ++++++.+.+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~---Rv~el~v~i~ 188 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRC---RVYELLVEIA 188 (503)
T ss_pred chHHHHHHHHhccCHHHHH---HHHHHHHHHH
Confidence 3388889999987778885 4555555543
No 114
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.74 E-value=2.1 Score=46.75 Aligned_cols=107 Identities=13% Similarity=0.330 Sum_probs=83.2
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCc---cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPT---SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~---~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
+..++.-+...|-.+=.||..-++++++.|+. +.+..|+.........|+...+=.+|++.++||..|+- +
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll--d---- 239 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL--D---- 239 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--S----
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--c----
Confidence 34466677778888999999999999999994 35678999999999999999999999999999987764 1
Q ss_pred cccHHHHHHHHhh---------hhcccchhhccccHHHHHHHHHh
Q psy16387 382 APLFEIVVRYLAC---------AMSHLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 382 ~p~~~~l~~~i~~---------AMTHi~~~Ir~dsl~~Ld~ll~~ 417 (676)
+..+.+++-|+.+ .+..-+..||-.|..++.+++..
T Consensus 240 r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 240 RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2455666666544 35556788999999999999988
No 115
>KOG1248|consensus
Probab=85.69 E-value=10 Score=47.07 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=90.2
Q ss_pred HHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh--c------cCC-hhh
Q psy16387 310 SRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF--S------QVT-EEE 380 (676)
Q Consensus 310 s~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~--~------~~~-~~~ 380 (676)
+-+..-....|+++|.-|+-++..+|.+....+...|-+-|+-+ .|.+..-|+..+.+|..|+ . .-| ++.
T Consensus 704 ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ 782 (1176)
T KOG1248|consen 704 DSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI 782 (1176)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH
Confidence 33455666689999999999999999766666666666666666 8999999999999999887 1 112 456
Q ss_pred hcccHHHHHHH--------Hhh---hhcc---------------------------cchhhccccHHHHHHHHHhCCccc
Q psy16387 381 LAPLFEIVVRY--------LAC---AMSH---------------------------LDAGVREDSLLIIDVLLEQCPILT 422 (676)
Q Consensus 381 i~p~~~~l~~~--------i~~---AMTH---------------------------i~~~Ir~dsl~~Ld~ll~~~p~l~ 422 (676)
|.+|++.|.+- +.| |.|| -.++|+.-|+.|+.++...+|...
T Consensus 783 lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777765443 111 2333 357899999999999999999653
Q ss_pred -hhh-hhhhhHHHHH
Q psy16387 423 -ANY-RSLLPHFLDM 435 (676)
Q Consensus 423 -~~~-~k~l~~f~~l 435 (676)
+.+ ..||++.+.+
T Consensus 863 l~~~~~~LL~sll~l 877 (1176)
T KOG1248|consen 863 LSPHLEELLPSLLAL 877 (1176)
T ss_pred HhhhHHHHHHHHHHH
Confidence 433 4688877763
No 116
>PRK09687 putative lyase; Provisional
Probab=85.41 E-value=2.6 Score=44.82 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=71.2
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE 380 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~ 380 (676)
.+.++++|+..+.|.+..+|..|+..|.++= .| .++..+.++..|.+..||..+...|..+...-. .
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--~~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--~ 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRG--GQ---------DVFRLAIELCSSKNPIERDIGADILSQLGMAKR--C 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcC--cc---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc--c
Confidence 5667889999999999999999999987653 12 266677788889999999999999988754111 1
Q ss_pred hcccHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 381 LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 381 i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
...-+++|. ..+..+-.+.||..+...|..+
T Consensus 88 ~~~a~~~L~---~l~~~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 88 QDNVFNILN---NLALEDKSACVRASAINATGHR 118 (280)
T ss_pred hHHHHHHHH---HHHhcCCCHHHHHHHHHHHhcc
Confidence 111222222 2245778888998888888765
No 117
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.37 E-value=1 Score=31.46 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=24.8
Q ss_pred HHHhhhcccccCChHHHHHHHHHHHHHhc
Q psy16387 346 ILDSVSPLMLDISATTRKAAVKLLSAMFS 374 (676)
Q Consensus 346 il~~~~~li~D~~~~VR~~l~~ll~~l~~ 374 (676)
|++.+..++.|.+..||.++...|..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57788889999999999999999988765
No 118
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.34 E-value=3.2 Score=37.74 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=57.6
Q ss_pred cCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc--CChHHHHHHHHHHHHHhccCChhhhcccHHHHHHH
Q psy16387 314 HNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD--ISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRY 391 (676)
Q Consensus 314 h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D--~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~ 391 (676)
+.+...|+.+|.++.+++.. ...|++...+++...+-- ..+++|...++.|..+...++++.+.|+++.+.+.
T Consensus 26 ~~~~~ek~~~l~si~~lI~~-----~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKL-----GGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 35556899999999999963 345666666665555442 13399999999999999999999999999987766
Q ss_pred Hh
Q psy16387 392 LA 393 (676)
Q Consensus 392 i~ 393 (676)
+.
T Consensus 101 l~ 102 (107)
T PF08064_consen 101 LL 102 (107)
T ss_pred HH
Confidence 53
No 119
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.13 E-value=1.3 Score=39.12 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=56.1
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~ 373 (676)
-.++.++..+.+.|+.+|..|+.-|..+....|.......-..+++.+..++.|.+..||.++..+|..+.
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 44778888899999999999999999998766532212233347888899999999999999999998764
No 120
>KOG2824|consensus
Probab=85.01 E-value=0.75 Score=48.36 Aligned_cols=38 Identities=26% Similarity=0.696 Sum_probs=32.6
Q ss_pred eeccccCceeEEEEeeCCceeeEeCCCCCCcceEec--------ccCCCCCCCceee
Q psy16387 99 QKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK--------NPCTTCDGKGQFA 147 (676)
Q Consensus 99 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~ 147 (676)
..|..|+|.+.+ +|..|+|+-++.. .+|..|+-.|.++
T Consensus 230 ~~C~~CGg~rFl-----------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL-----------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE-----------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 679999999875 8999999998875 6899999888765
No 121
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.26 E-value=2.4 Score=47.01 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=69.0
Q ss_pred HHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHH-HHHHHhhhhcccc-
Q psy16387 323 GLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEI-VVRYLACAMSHLD- 400 (676)
Q Consensus 323 aL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~-l~~~i~~AMTHi~- 400 (676)
-++.|-+++.+||..--...++..++.+..++++.++.||.+.|++++.++. +++.++-+..+ +-.||..+|..-.
T Consensus 3 ~~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 3 KANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred hHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCC
Confidence 3678889999999533356778889999988888889999999999998866 55555544442 3334444444322
Q ss_pred -hhhccccHHHHHHHHHh--CC
Q psy16387 401 -AGVREDSLLIIDVLLEQ--CP 419 (676)
Q Consensus 401 -~~Ir~dsl~~Ld~ll~~--~p 419 (676)
.-=|+-||++...++++ .|
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCc
Confidence 23477899999999999 55
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=83.86 E-value=3.3 Score=34.95 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=46.3
Q ss_pred HHHHHHHh-ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh
Q psy16387 305 VKELMSRL-RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373 (676)
Q Consensus 305 lk~lLs~l-~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~ 373 (676)
++.|+..+ ++.|+.+|..|+.-|.++- -...++.+..++.|.+..||.+++..|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 35677888 8999999999998888432 1146777788889999999999999998763
No 123
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.54 E-value=12 Score=37.36 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+++.|..+-+.++.+|..|+.=+.-.+...= .|=...++.+++|.+|.++.||+.+.++++.+.++.+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 6889999999999999999999999997642 2223588999999999999999999999999988665
No 124
>KOG0803|consensus
Probab=83.14 E-value=2.2 Score=54.03 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=84.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..++.++...+.++|..||+.|.+++..--.+.+..-+.....-.+.+++|.++.||.+....+..+..++. ..++||
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HHhhHH
Confidence 5678999999999999999999999996554433333344455667789999999999999999987776444 678999
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHH
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIID 412 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld 412 (676)
...++.+.-.|---+...|-.-|..-+.
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~ 149 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFK 149 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHH
Confidence 9999999999888777777665554443
No 125
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.87 E-value=1.1 Score=43.13 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=7.5
Q ss_pred ccCCCCCCCcee
Q psy16387 135 NPCTTCDGKGQF 146 (676)
Q Consensus 135 ~~C~~C~G~G~v 146 (676)
.+|+.|+-.|.+
T Consensus 134 ~rC~~Cnengl~ 145 (147)
T cd03031 134 LRCPECNENGLV 145 (147)
T ss_pred EECCCCCccccc
Confidence 467777766654
No 126
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=81.84 E-value=5.5 Score=43.23 Aligned_cols=136 Identities=17% Similarity=0.273 Sum_probs=92.8
Q ss_pred HHHHHHH-hccCCc---hhhh-hHHHHHHHhhhcCCc---cchhhcHHHHHHhhhcccccC---ChHHHHHHHHHHHHHh
Q psy16387 305 VKELMSR-LRHNNS---AVKQ-DGLSGLLEIITLNPT---SVIKSHFSSILDSVSPLMLDI---SATTRKAAVKLLSAMF 373 (676)
Q Consensus 305 lk~lLs~-l~h~n~---~~Rk-daL~gl~~ll~~~P~---~~~~~~~~~il~~~~~li~D~---~~~VR~~l~~ll~~l~ 373 (676)
+..++.- +.+|+. ..|- |+|.=+..++.+-.. ..++.-+..+.+...++|.++ -++.|.++++||+.+.
T Consensus 69 i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~ 148 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAIN 148 (319)
T ss_dssp HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHH
Confidence 3444442 344442 2332 355555555544321 234566777888899999863 4799999999999988
Q ss_pred ccCChhhhc---ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc----cc-----hhhhhhhhHHHHHhcccc
Q psy16387 374 SQVTEEELA---PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI----LT-----ANYRSLLPHFLDMISSQT 440 (676)
Q Consensus 374 ~~~~~~~i~---p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~----l~-----~~~~k~l~~f~~lls~~~ 440 (676)
..+++..+. ..|..++-.+.-|+.|-..+|-+.+|+.|.-|++.+.. .. ..+..+|.+-+.+|--..
T Consensus 149 ~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 149 EHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 766554443 25677788888999999999999999999999999764 11 234567777777764433
No 127
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=81.39 E-value=1.7 Score=54.17 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=46.0
Q ss_pred eeHHhHh--------cCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcc---e
Q psy16387 63 LTFTQAA--------RGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSR---N 131 (676)
Q Consensus 63 lsLee~~--------~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G---~ 131 (676)
-++.+|+ .+...++.+. ...|+.|..... ...|+.|+..=. ....|+.|+..= .
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te---------~vy~CPsCGaev~~de 706 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTE---------PVYVCPDCGAEVPPDE 706 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCC---------CceeCccCCCccCCCc
Confidence 3678888 5556566665 567999987542 248999987631 234899998741 0
Q ss_pred EecccCCCCCCCceeee
Q psy16387 132 LIKNPCTTCDGKGQFAQ 148 (676)
Q Consensus 132 ~i~~~C~~C~G~G~v~~ 148 (676)
.....|+.|+..-....
T Consensus 707 s~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 707 SGRVECPRCDVELTPYQ 723 (1337)
T ss_pred cccccCCCCCCcccccc
Confidence 01348999986644333
No 128
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=81.19 E-value=0.9 Score=56.09 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=23.5
Q ss_pred ceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEe
Q psy16387 98 AQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPV 156 (676)
Q Consensus 98 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~I 156 (676)
...|+.|.|.|.+...++.+.. +..+|+.|+|.++..+ .++|++
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~-------------~~~~C~~C~G~R~~~e--~l~v~~ 781 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPD-------------VYVPCDVCKGKRYNRE--TLEVKY 781 (943)
T ss_pred CCCCCcccccceEEEEeccCCC-------------ccccCccccCcccccc--ceEEEE
Confidence 4457777777766655543321 1246666666655444 344443
No 129
>KOG2956|consensus
Probab=81.13 E-value=3.5 Score=46.46 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=79.9
Q ss_pred HHHHHHHhcc-CCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCCh-HHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRH-NNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISA-TTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h-~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~-~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
|..++.-+.+ ++...|+.||+-|++++++.|+. +.-..--.+.+++..-.|..+ .||.|.=.++..+..-.|...|.
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~-l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~ 409 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR-LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV 409 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh-hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH
Confidence 4455666776 89999999999999999999964 344455567788888888855 55666556556555556666666
Q ss_pred ccHHHHHH-------HHhhhhcccchhhccccHHHHHHHHHhCCccc
Q psy16387 383 PLFEIVVR-------YLACAMSHLDAGVREDSLLIIDVLLEQCPILT 422 (676)
Q Consensus 383 p~~~~l~~-------~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~ 422 (676)
-..++|+. -+--.||-+..+|..|.| ++++-+..|.++
T Consensus 410 ~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL--~~ll~diaP~~i 454 (516)
T KOG2956|consen 410 NISPLILTADEPRAVAVIKMLTKLFERLSAEEL--LNLLPDIAPCVI 454 (516)
T ss_pred HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHH--HHhhhhhhhHHH
Confidence 66666554 444468888888877765 455666666544
No 130
>KOG0212|consensus
Probab=80.43 E-value=6.1 Score=45.54 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=114.5
Q ss_pred ccccccccceecccc---cCCCCCchhhHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHhcc----CCchhhhhHH
Q psy16387 252 EKARVKLRKSYKTIL---PKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRH----NNSAVKQDGL 324 (676)
Q Consensus 252 ~~~rGDL~V~~~V~~---Pk~~nlTdt~fksk~i~l~~q~~~~~~~~~~~~~r~l~lk~lLs~l~h----~n~~~RkdaL 324 (676)
...||+..+.|...+ -|-..-+|.+.+.-.+.+..+.++.-.+. ....+|.++...++. -|+.+|+=-+
T Consensus 113 Kv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~----~~tFsL~~~ipLL~eriy~~n~~tR~flv 188 (675)
T KOG0212|consen 113 KVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES----ASTFSLPEFIPLLRERIYVINPMTRQFLV 188 (675)
T ss_pred HHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc----ccccCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 345677666655332 23334466666777777777776543222 125667888887764 4888998777
Q ss_pred HHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHH----HHHHHHHHhccCChh-hhcccHHHHHHHHhhhhccc
Q psy16387 325 SGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKA----AVKLLSAMFSQVTEE-ELAPLFEIVVRYLACAMSHL 399 (676)
Q Consensus 325 ~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~----l~~ll~~l~~~~~~~-~i~p~~~~l~~~i~~AMTHi 399 (676)
.-|+-+-+. |..-.-+++..++..+.-.+.|...+||.. +..+|++|-. -|.. +..-..++++.|+.+.
T Consensus 189 ~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s-~P~s~d~~~~i~vlv~~l~ss---- 262 (675)
T KOG0212|consen 189 SWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS-SPSSMDYDDMINVLVPHLQSS---- 262 (675)
T ss_pred HHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-CccccCcccchhhccccccCC----
Confidence 777666544 543356899999999999999999999954 4456666654 2333 3445566666655443
Q ss_pred chhhccccHHHHHHHHHhCCc-cchhhhhhhhHHHHHhccccc
Q psy16387 400 DAGVREDSLLIIDVLLEQCPI-LTANYRSLLPHFLDMISSQTR 441 (676)
Q Consensus 400 ~~~Ir~dsl~~Ld~ll~~~p~-l~~~~~k~l~~f~~lls~~~~ 441 (676)
.+.||.-|+.-+..++..+|. +..+..++|...+..|+....
T Consensus 263 ~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~ 305 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE 305 (675)
T ss_pred cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc
Confidence 466776665555555555663 455666777776666665544
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=79.89 E-value=8 Score=41.83 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=70.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCc-cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC-hhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPT-SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT-EEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~-~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~-~~~i~ 382 (676)
|++.+..+.+.+.++|..||.+|.+++.+++. +.+..+...|+..+...+-=+...=+..+.+++..+.=++. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 78899999999999999999999999987764 45667778888888887765555444555566654433332 12222
Q ss_pred ccHHHHHHHHhhhhc--ccchhhccccHHHHHHHHHh
Q psy16387 383 PLFEIVVRYLACAMS--HLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 383 p~~~~l~~~i~~AMT--Hi~~~Ir~dsl~~Ld~ll~~ 417 (676)
-+++-+..++...++ .-.+.+|.-++.-|.++.=.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv 161 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFV 161 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHh
Confidence 333333333333333 22345665555555554433
No 132
>KOG1967|consensus
Probab=78.44 E-value=9.9 Score=46.17 Aligned_cols=95 Identities=23% Similarity=0.357 Sum_probs=83.1
Q ss_pred hcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 341 SHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 341 ~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
.-.+.|++.+...+.-....+|...+..|..++..+|.+.+-|+++.+..-+.-|+.-.+.++|...+..+..++...+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 34566888888888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhh-hhhhhHHHHH
Q psy16387 421 LTANY-RSLLPHFLDM 435 (676)
Q Consensus 421 l~~~~-~k~l~~f~~l 435 (676)
+..-+ ..+.+.++.+
T Consensus 943 L~t~~~~Tlvp~lLsl 958 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSL 958 (1030)
T ss_pred cchHHHhHHHHHHHhc
Confidence 86554 4556666554
No 133
>KOG0211|consensus
Probab=78.26 E-value=11 Score=45.40 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=113.5
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
.-++..++.=.+.||-+..-.+.++..-++..-+..+..++|+.+..+.-|..-.||.|++..+..++.+...+ -|-
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~---~~~ 516 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVE---FFD 516 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhH---Hhh
Confidence 44556778888889988887777777666655556677889999999999999999999999998776655533 333
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhcccccccccceeeEEecCCCcchhHHH
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFR 463 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~~~R 463 (676)
+.+..+++.-|+....+||+-+.+.|-.|.+.+. +.| ..+.+-++.+.+.. + -.-|
T Consensus 517 ~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~------~-------------y~~R 574 (759)
T KOG0211|consen 517 EKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQD------N-------------YLVR 574 (759)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCc------c-------------cchh
Confidence 4466667777999999999999999999999999 556 46888888887765 1 1236
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16387 464 IKVLTRLRSMLLAIVH 479 (676)
Q Consensus 464 ~kvL~~L~~fL~~~~~ 479 (676)
...|.++..|..++-+
T Consensus 575 ~t~l~si~~la~v~g~ 590 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQ 590 (759)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 7777777766555433
No 134
>PRK04023 DNA polymerase II large subunit; Validated
Probab=78.12 E-value=1.9 Score=52.55 Aligned_cols=65 Identities=18% Similarity=0.439 Sum_probs=44.6
Q ss_pred eHHhHhc-CceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCC
Q psy16387 64 TFTQAAR-GVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDG 142 (676)
Q Consensus 64 sLee~~~-G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G 142 (676)
++.+|+. +...++.+.. ..|+.|.-.+ ....|+.|+..- .....|+.|.-.+. ...|+.|.-
T Consensus 609 ~i~~A~~~~g~~eVEVg~-RfCpsCG~~t-----~~frCP~CG~~T---------e~i~fCP~CG~~~~--~y~CPKCG~ 671 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGR-RKCPSCGKET-----FYRRCPFCGTHT---------EPVYRCPRCGIEVE--EDECEKCGR 671 (1121)
T ss_pred cHHHHHhcCCceeecccC-ccCCCCCCcC-----CcccCCCCCCCC---------CcceeCccccCcCC--CCcCCCCCC
Confidence 5788888 6666666653 4699997653 457899998761 12357999944432 467999986
Q ss_pred Cce
Q psy16387 143 KGQ 145 (676)
Q Consensus 143 ~G~ 145 (676)
.-.
T Consensus 672 El~ 674 (1121)
T PRK04023 672 EPT 674 (1121)
T ss_pred CCC
Confidence 543
No 135
>KOG1058|consensus
Probab=78.12 E-value=13 Score=44.45 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=83.9
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
-|.|.-+..++-.+|+.+|.-.-++.++|-.+-+..++..=+.+..--=.|+...-|+.|++.++.+.-+-| +.-+-.+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-~~aatvV 398 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-EVAATVV 398 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-HHHHHHH
Confidence 367788889999999999999999999887543333444333333333567788889999999998866554 2233334
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh-hhhhhhHHHH
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLD 434 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~ 434 (676)
++++-||+ -.++.--.|.|.|+.-.+|.+|.|+.. ..+++..|-.
T Consensus 399 ~~ll~fis----D~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 399 SLLLDFIS----DSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQ 444 (948)
T ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhh
Confidence 44444443 334555567888889999999987654 4455555544
No 136
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.01 E-value=6.3 Score=39.46 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=71.9
Q ss_pred HHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC----c
Q psy16387 345 SILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP----I 420 (676)
Q Consensus 345 ~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p----~ 420 (676)
..|.-...-+...+.+-|--+.+-...++..-..+.+-|.++.++.-|+.|+.+-+++|...+|+.|..|+...+ .
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 344444455555555555555555555555457788999999999999999999999999999999999966655 3
Q ss_pred cchhhhhhhhHHHHHhccccc
Q psy16387 421 LTANYRSLLPHFLDMISSQTR 441 (676)
Q Consensus 421 l~~~~~k~l~~f~~lls~~~~ 441 (676)
|+-++.++|+.+--+.+...+
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n 138 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVN 138 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 566778888888777766543
No 137
>KOG1967|consensus
Probab=78.00 E-value=5.8 Score=48.03 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=79.4
Q ss_pred hccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCC---hHHHHHHHHHHHHHhccCChhhhcccHHHH
Q psy16387 312 LRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDIS---ATTRKAAVKLLSAMFSQVTEEELAPLFEIV 388 (676)
Q Consensus 312 l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~---~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l 388 (676)
+.=-...+|-++|.-+..++..++. ++..|++.+++....+-.|.+ -.||..+++.|..+...+|...+-||-+.+
T Consensus 918 Ls~~D~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~V 996 (1030)
T KOG1967|consen 918 LSMPDVIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLV 996 (1030)
T ss_pred cCCCccchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHH
Confidence 4456677899999999999999984 788999999999999999998 689999999999999999999999999988
Q ss_pred HHHHhhhhcccchhhccccH
Q psy16387 389 VRYLACAMSHLDAGVREDSL 408 (676)
Q Consensus 389 ~~~i~~AMTHi~~~Ir~dsl 408 (676)
+-=|.=-+-|=--=||..|.
T Consensus 997 l~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 997 LRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred HHHhhhccCcHHHHHHHHHH
Confidence 76555444444444554443
No 138
>PF14961 BROMI: Broad-minded protein
Probab=77.82 E-value=12 Score=46.69 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=98.7
Q ss_pred HHHHHHHhccCCch-hhhhHHHHHHHhhhcCCccchh-hcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSA-VKQDGLSGLLEIITLNPTSVIK-SHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~-~RkdaL~gl~~ll~~~P~~~~~-~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
++.++.++..-+++ +|.+|+.-|-..- |.+++. ..-+.+-+.+.-.+.|.|+.+..+.+++....|..-|....+
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p---~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAP---PSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCC---hhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhH
Confidence 45667777777776 8999987655443 444444 477778888999999999999999999999988866655432
Q ss_pred ----ccHHHHHHHHhhhhcccc---h--hhcc-c---cHHHHHHHHHh---CCcc-chh----hhhhhhHHHHHhccccc
Q psy16387 383 ----PLFEIVVRYLACAMSHLD---A--GVRE-D---SLLIIDVLLEQ---CPIL-TAN----YRSLLPHFLDMISSQTR 441 (676)
Q Consensus 383 ----p~~~~l~~~i~~AMTHi~---~--~Ir~-d---sl~~Ld~ll~~---~p~l-~~~----~~k~l~~f~~lls~~~~ 441 (676)
..+..+.+|..+.=.++- . ||+. + -|+.+.+|-++ .|.. .+. ...|++.++.+|+-.+.
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~~~~ 319 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLSTHHD 319 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhccccc
Confidence 223334444444433222 2 2322 2 24455555555 4531 111 22488999999998654
Q ss_pred ccccc--eeeEE-ec-----------CCCcchhHHHHHHHHHHH
Q psy16387 442 SHEQA--RQLTV-DL-----------DSRTTTTVFRIKVLTRLR 471 (676)
Q Consensus 442 ~~~~~--~~ltv-~~-----------~~~~~~~~~R~kvL~~L~ 471 (676)
.+... +.|+. .+ .+|+-.-..|..||..|.
T Consensus 320 ~~~~~s~k~L~pi~~lslLD~kA~WFkKWmHg~ySR~vvlr~L~ 363 (1296)
T PF14961_consen 320 QNSLGSPKTLTPIHFLSLLDPKAVWFKKWMHGYYSRTVVLRLLE 363 (1296)
T ss_pred CCCcccccccchhhhhhhhccchHHHHHHHhhcchHHHHHHHHc
Confidence 43222 22332 11 123334445888888773
No 139
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=76.76 E-value=1.4 Score=57.66 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=8.3
Q ss_pred ccCCCCCCCceeeee
Q psy16387 135 NPCTTCDGKGQFAQR 149 (676)
Q Consensus 135 ~~C~~C~G~G~v~~~ 149 (676)
.+|+.|+|..+..+.
T Consensus 1631 ~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1631 RPCPTCSGFRIQPLA 1645 (1809)
T ss_pred cCCCCCCCcCCCHHH
Confidence 456666666554443
No 140
>KOG1020|consensus
Probab=76.68 E-value=11 Score=47.91 Aligned_cols=109 Identities=22% Similarity=0.331 Sum_probs=85.1
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHH-HHhccCChhhhc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLS-AMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~-~l~~~~~~~~i~ 382 (676)
-|+.+++-+..-..++|-.||.=|-.+++..|..+ --..+..+|-..++|.+.+||.|++.|+. .++. .++.+.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHHH
Confidence 36777788888899999999999999999888422 22346778888999999999999999995 5654 556666
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL 421 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l 421 (676)
-|+..+.-- .---...||.-++++|.-+=+.+|.+
T Consensus 892 qyY~~i~er----IlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 892 QYYDQIIER----ILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred HHHHHHHhh----cCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 666665443 33446789999999999999999964
No 141
>KOG0414|consensus
Probab=76.65 E-value=11 Score=47.05 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=85.3
Q ss_pred cccccccceecccccCC---------CCCchhhHHHHHHHHHHHHH-----HcCCc--chhhhhhhhhHHHHHHHhccCC
Q psy16387 253 KARVKLRKSYKTILPKG---------QNVTNTEFKVKRIVIREQLK-----ERGEN--ELLSVQRKLSVKELMSRLRHNN 316 (676)
Q Consensus 253 ~~rGDL~V~~~V~~Pk~---------~nlTdt~fksk~i~l~~q~~-----~~~~~--~~~~~~r~l~lk~lLs~l~h~n 316 (676)
+..|...+.+.+.+|+- +-+...++..|..++.--.. ..++. +..-..+..-+..|..++.+-|
T Consensus 293 k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvs 372 (1251)
T KOG0414|consen 293 KIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVS 372 (1251)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 34566777777777772 12455666666655533221 11111 1100113323566778889999
Q ss_pred chhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 317 SAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 317 ~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+-||-.+|+.+..+...|- +-......+++.++...-|.+.-||+.+++|+..++...|
T Consensus 373 a~vRskVLqv~~~l~~~~s--~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 373 AYVRSKVLQVFRRLFQQHS--IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHHHHHHHHccC--CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999997775 2346778899999999999999999999999998887666
No 142
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=76.24 E-value=9.3 Score=34.94 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=53.2
Q ss_pred hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc--CChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHH
Q psy16387 318 AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD--ISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYL 392 (676)
Q Consensus 318 ~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D--~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i 392 (676)
.-|+.++..+.+++.. ...|++..++++...+.- ..++.|...++.|..+...++++.+.|.++.+++.|
T Consensus 30 ~ek~~~i~ai~~lI~~-----~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 30 NEKKRALRSIGFLIKL-----MGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3599999999999953 345555555555444331 255699999999999999999999999998876655
No 143
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=75.82 E-value=9.1 Score=35.01 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=67.4
Q ss_pred chhhcHHHHHHhhhcccccCC--hHH--HHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHH
Q psy16387 338 VIKSHFSSILDSVSPLMLDIS--ATT--RKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDV 413 (676)
Q Consensus 338 ~~~~~~~~il~~~~~li~D~~--~~V--R~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ 413 (676)
.+..|+=-|++.+...+.|.+ +++ |+..++-+..+.. +-...+..+.+.+++-+.+|+. .++.|..|++....
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~-~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~ 80 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK-LMGKHISSALPQIMACLQSALE--IPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHH
Confidence 356677778899999999887 655 8888888887777 4457889999999999999997 78899999999999
Q ss_pred HHHhCCc
Q psy16387 414 LLEQCPI 420 (676)
Q Consensus 414 ll~~~p~ 420 (676)
++.+.+.
T Consensus 81 ~i~~L~~ 87 (107)
T smart00802 81 LIKTLKE 87 (107)
T ss_pred HHHhCCH
Confidence 9999884
No 144
>KOG1824|consensus
Probab=75.56 E-value=14 Score=45.20 Aligned_cols=136 Identities=18% Similarity=0.273 Sum_probs=95.9
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE 380 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~ 380 (676)
+.--++-++.++...-..+||.|...|-++.++-|..+...-.-.++..+.+. +....+|. .++.|.+|+-+.. ..
T Consensus 172 h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~--~q~~~~rt-~Iq~l~~i~r~ag-~r 247 (1233)
T KOG1824|consen 172 HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNR--TQMSATRT-YIQCLAAICRQAG-HR 247 (1233)
T ss_pred HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC--CchHHHHH-HHHHHHHHHHHhc-ch
Confidence 34446667777888888999999999999998888654444444455555555 44555554 6677777665333 33
Q ss_pred hcccH----HHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc-cchhhhhhhhHHHHHhccccc
Q psy16387 381 LAPLF----EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI-LTANYRSLLPHFLDMISSQTR 441 (676)
Q Consensus 381 i~p~~----~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~-l~~~~~k~l~~f~~lls~~~~ 441 (676)
+..|. +++.=|...+ .-=..+.|+.+|..|..+|.+||. ....|..+++--++.|+...+
T Consensus 248 ~~~h~~~ivp~v~~y~~~~-e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 248 FGSHLDKIVPLVADYCNKI-EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred hhcccchhhHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCC
Confidence 33333 4444455444 444678999999999999999996 567799999999999998875
No 145
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.37 E-value=17 Score=38.59 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=90.3
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccc---h-hhc-HHHHHHhhhcccc--------cCChHHHHHHHH
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSV---I-KSH-FSSILDSVSPLML--------DISATTRKAAVK 367 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~---~-~~~-~~~il~~~~~li~--------D~~~~VR~~l~~ 367 (676)
-.+-+.-+|..+.||+...|..++.-|..++..-|... + ... ...+-.++.+++. |++-.+=.+++.
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 44446678999999999999999999999998777543 2 334 4445556677777 777777777777
Q ss_pred HHHHHhccC----ChhhhcccHHHHHHHHhhhhcccch----hhccccHHHHHHHHHhCCc-cchhhhhhhhHHHHHhc
Q psy16387 368 LLSAMFSQV----TEEELAPLFEIVVRYLACAMSHLDA----GVREDSLLIIDVLLEQCPI-LTANYRSLLPHFLDMIS 437 (676)
Q Consensus 368 ll~~l~~~~----~~~~i~p~~~~l~~~i~~AMTHi~~----~Ir~dsl~~Ld~ll~~~p~-l~~~~~k~l~~f~~lls 437 (676)
.|..++... ......-+...+.-.|.++|+|... +++.-.++.|..+++.... .+.+..+|++.+.++|.
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 777665532 2233334555566668889998774 5555555555555555543 23444556666655543
No 146
>KOG2171|consensus
Probab=73.61 E-value=35 Score=42.53 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=88.7
Q ss_pred HHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC-hhhhcccHHHH
Q psy16387 310 SRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT-EEELAPLFEIV 388 (676)
Q Consensus 310 s~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~-~~~i~p~~~~l 388 (676)
.-+++-|++.|.-|+.-|..+...-+ +....|+..++.=....+.|.+..||-++++.+..+...++ .....++|.-+
T Consensus 125 q~~~S~~~~~rE~al~il~s~~~~~~-~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~l 203 (1075)
T KOG2171|consen 125 QSTKSPNPSLRESALLILSSLPETFG-NTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDL 203 (1075)
T ss_pred HHhcCCCcchhHHHHHHHHhhhhhhc-cccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34577889999999998888876666 34567888999999999999999999999999998887674 33344455444
Q ss_pred HHHHhhhhcccchh----hccccHHHHHHHHHhCCccchh-hhhhhhHHHHHhccc
Q psy16387 389 VRYLACAMSHLDAG----VREDSLLIIDVLLEQCPILTAN-YRSLLPHFLDMISSQ 439 (676)
Q Consensus 389 ~~~i~~AMTHi~~~----Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~lls~~ 439 (676)
+.-+-..|.-...+ .=.++|+.|+-|++..|.+.+. ...|++--+.+.+..
T Consensus 204 lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~ 259 (1075)
T KOG2171|consen 204 LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNK 259 (1075)
T ss_pred hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444332221 1233677788888888866543 456666555554433
No 147
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=72.95 E-value=6.3 Score=35.54 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=43.2
Q ss_pred CccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHH
Q psy16387 335 PTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEI 387 (676)
Q Consensus 335 P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~ 387 (676)
|++.+..|...++.-+..-++-.+.+||...+++|+.++...|.+.+..+..-
T Consensus 1 ~~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~k 53 (102)
T PF12333_consen 1 QPELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVK 53 (102)
T ss_pred ChHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHH
Confidence 34567789999999999999999999999999999999998887644444433
No 148
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.83 E-value=1.8 Score=53.45 Aligned_cols=29 Identities=28% Similarity=0.680 Sum_probs=24.3
Q ss_pred EeCCCCCCcceEe---------cccCCCCCCCceeeee
Q psy16387 121 STCRYCKGSRNLI---------KNPCTTCDGKGQFAQR 149 (676)
Q Consensus 121 ~~C~~C~G~G~~i---------~~~C~~C~G~G~v~~~ 149 (676)
-.|+.|.|.|.+. ..+|+.|+|.++..+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 4599999999886 4799999999876654
No 149
>KOG2025|consensus
Probab=72.63 E-value=18 Score=43.07 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=78.7
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+++++|.-.-...-+||...++-|.-++...- ++-..-...|++++...+.|.++.||-+++..|..+-. +...+
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~----d~~de 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG----DPKDE 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc----CCCCC
Confidence 46777777777778899999999988886443 45567788899999999999999999999999987632 33445
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHH
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIID 412 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld 412 (676)
-+++.-+|...--.--+++||+-+|.-+.
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 66666666655556667778877776544
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=72.56 E-value=9 Score=44.62 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=70.6
Q ss_pred hhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 302 KLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 302 ~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
...+.-+++++-+=...+|+.|+.+|-++...+|. |++.|..-++-|+.-+|...+.+.-+.|..++..-|...+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~-----~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL 132 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE-----HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL 132 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T------HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH-----HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33477889999999999999999999999987773 4555555555677777777777777777777766788888
Q ss_pred cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 382 APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 382 ~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
..+|..+.. +.++ ...||+..++||..=|...|
T Consensus 133 ~~lf~~i~~---~~~~--de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 133 TGLFSQIES---SKSG--DEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHHHHHHH------HS---HHHHHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHh---cccC--chHHHHHHHHHHHHHHhhCc
Confidence 888877664 1222 56689999999965555544
No 151
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=72.51 E-value=12 Score=42.03 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=70.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-+++..+..++..|..-|..|--++..=|..++..++..|++=++.-+.=.|..||.+.+..|..++.. .++.+.+|
T Consensus 325 ~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~-~~~~i~~h 403 (415)
T PF12460_consen 325 LPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE-APELISEH 403 (415)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-CHHHHHHH
Confidence 44555666666666788888888888888898888899999988888888777888999999999988873 47888889
Q ss_pred HHHHHHHHh
Q psy16387 385 FEIVVRYLA 393 (676)
Q Consensus 385 ~~~l~~~i~ 393 (676)
++.++..+.
T Consensus 404 l~sLI~~LL 412 (415)
T PF12460_consen 404 LSSLIPRLL 412 (415)
T ss_pred HHHHHHHHH
Confidence 988877653
No 152
>KOG1242|consensus
Probab=72.40 E-value=17 Score=42.31 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=94.7
Q ss_pred HHHHHHhccCCchhhhh-HHHHHHHhh-hcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 306 KELMSRLRHNNSAVKQD-GLSGLLEII-TLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 306 k~lLs~l~h~n~~~Rkd-aL~gl~~ll-~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
..+-...++.+...|+| ++....-.. ..+| .-+..+-++++.+.--+.|..+.||+++....+.+..++++..+..
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~--~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGP--PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCC--CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 33444456777777775 555544443 3334 2467888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh-hhhhhhHHHHHhcccc
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLDMISSQT 440 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~lls~~~ 440 (676)
+.+.++.-+..+ .=.=..-|+..|+.+.+..|...+. ...++|...+.|.-.+
T Consensus 255 llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~ 308 (569)
T KOG1242|consen 255 LLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK 308 (569)
T ss_pred hhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC
Confidence 887766655544 2222346899999999999976554 4678888777775544
No 153
>PTZ00429 beta-adaptin; Provisional
Probab=72.27 E-value=18 Score=43.84 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=70.3
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh-
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL- 381 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i- 381 (676)
+.+..+...+.|.|+-+|--||+-+-.+-. +..+..++..+...+.|.++-||+++.-.+-.++..-| +.+
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~ 176 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFY 176 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-cccc
Confidence 456677788899999999999987766542 33445577788888899999999987777766666333 332
Q ss_pred -cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 382 -APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 382 -~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
..|.+.+.- .+..-++.|...|+..|.-+.+..|
T Consensus 177 ~~~~~~~L~~----LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 177 QQDFKKDLVE----LLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred ccchHHHHHH----HhcCCCccHHHHHHHHHHHHHHhCc
Confidence 234444332 3445566666666666666655555
No 154
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.85 E-value=20 Score=35.89 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=72.6
Q ss_pred hccCCchhhhhHHHHHHHhhhc-CCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHH---hccCChhhhcccHHH
Q psy16387 312 LRHNNSAVKQDGLSGLLEIITL-NPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAM---FSQVTEEELAPLFEI 387 (676)
Q Consensus 312 l~h~n~~~RkdaL~gl~~ll~~-~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l---~~~~~~~~i~p~~~~ 387 (676)
++.--..-|-=|.+|++|+|.. .+. -+-..+..|+.-+..-+.-.+.+|..+.++.|+.+ .+.+. +.+.||.+.
T Consensus 47 L~Et~~Py~flA~~g~~dll~~~~~~-kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-~aLvPyyrq 124 (183)
T PF10274_consen 47 LRETEHPYRFLARQGIKDLLERGGGE-KILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-EALVPYYRQ 124 (183)
T ss_pred hhccCccHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHH
Confidence 3333344567788999999988 553 34556777887777888889999999999999988 55555 678898888
Q ss_pred HHHHHh----hhhc-------ccchhhccccHHHHHHHHHhCC
Q psy16387 388 VVRYLA----CAMS-------HLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 388 l~~~i~----~AMT-------Hi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
++..++ .... --...++.---..|..|-++..
T Consensus 125 LLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 125 LLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 776666 4411 1224444444556666655555
No 155
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=71.50 E-value=12 Score=43.21 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=73.3
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCc-cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPT-SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~-~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
++++.+.. ...|.++|.+++..+...|. +-++.++ +...+.+.+++.=.....+|+.++...++..+ .
T Consensus 7 ~~l~~l~~--~~~~~~~L~~l~~~~~~~~~l~~~~~~~------lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~ 75 (503)
T PF10508_consen 7 ELLEELSS--KAERLEALPELKTELSSSPFLERLPEPV------LFDCLNTSNREQVELICDILKRLLSALSPDSL---L 75 (503)
T ss_pred HHHHHHhc--ccchHHHHHHHHHHHhhhhHHHhchHHH------HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---H
Confidence 44555432 26799999999999987772 1122222 33333455556667788899999888887777 7
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
+-+..++..+++|-++.||..+++-|.-++++-
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~ 108 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS 108 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 778899999999999999999999887776653
No 156
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=70.73 E-value=3.1 Score=49.99 Aligned_cols=32 Identities=31% Similarity=0.696 Sum_probs=17.3
Q ss_pred eCCCCCCcceEe---------cccCCCCCCCceeeeeeEEEEE
Q psy16387 122 TCRYCKGSRNLI---------KNPCTTCDGKGQFAQRQTITVP 155 (676)
Q Consensus 122 ~C~~C~G~G~~i---------~~~C~~C~G~G~v~~~~~l~V~ 155 (676)
.|..|+|-|.+- -.+|+.|+|+.+.++ +++|+
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E--tLev~ 772 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE--TLEVK 772 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCcccccc--eEEEE
Confidence 455555555442 146777777665443 45444
No 157
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.70 E-value=14 Score=39.14 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=84.1
Q ss_pred HhccCCchhhhhHHHHHHHhhhcCCccch-hhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh--ccCChhhhcccHHH
Q psy16387 311 RLRHNNSAVKQDGLSGLLEIITLNPTSVI-KSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF--SQVTEEELAPLFEI 387 (676)
Q Consensus 311 ~l~h~n~~~RkdaL~gl~~ll~~~P~~~~-~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~--~~~~~~~i~p~~~~ 387 (676)
-|.+=++.+|..|+.-|.+.+..-|...+ ......|++=....+ |+...|..+ ++-|..+. ...+.+.....+..
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~ 84 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPA-LKGLLALVKMKNFSPESAVKILRS 84 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHH-HHHHHHHHhCcCCChhhHHHHHHH
Confidence 34556778899999999999999986533 446667777777777 666677777 44444444 34455555555554
Q ss_pred HHHHHhhhhcccchhhccccHHHHHHHHHhCCccch-hhhhhhhHHHHHhcccc
Q psy16387 388 VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA-NYRSLLPHFLDMISSQT 440 (676)
Q Consensus 388 l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~-~~~k~l~~f~~lls~~~ 440 (676)
+.-++.. --.....|...+.+|+.|+++++.-.. .-...+..|+.++.-.+
T Consensus 85 l~~~~~~--q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEk 136 (262)
T PF14500_consen 85 LFQNVDV--QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEK 136 (262)
T ss_pred HHHhCCh--hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCC
Confidence 4443332 234556799999999999999885332 23467778888776544
No 158
>KOG0212|consensus
Probab=70.28 E-value=21 Score=41.34 Aligned_cols=129 Identities=20% Similarity=0.303 Sum_probs=85.4
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChH-HHHHHHH---HHHHHhc-cCCh--
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISAT-TRKAAVK---LLSAMFS-QVTE-- 378 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~-VR~~l~~---ll~~l~~-~~~~-- 378 (676)
.-+...+..-++-.+.-||.-++|.+.-.|.. +-..++.|+.++.|++.|.+.. .+..... +|..++. ....
T Consensus 253 ~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~ 331 (675)
T KOG0212|consen 253 NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE 331 (675)
T ss_pred hhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 33445555566668888999999999988864 5679999999999999999874 3332222 2222211 1111
Q ss_pred hhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc-cchhhhhhhhHHHHHhccc
Q psy16387 379 EELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI-LTANYRSLLPHFLDMISSQ 439 (676)
Q Consensus 379 ~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~-l~~~~~k~l~~f~~lls~~ 439 (676)
-+..+.++++.-|+ +|-..+-|.-+|+-+-.|...+|. +......|+++.+.-||-.
T Consensus 332 id~~~ii~vl~~~l----~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 332 IDYGSIIEVLTKYL----SDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR 389 (675)
T ss_pred cchHHHHHHHHHHh----hcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc
Confidence 22347777777776 566777888888888888888884 3444456666665555533
No 159
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.25 E-value=17 Score=38.25 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=81.4
Q ss_pred HHHHHHHhccCCc-hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccC-Chhhhc
Q psy16387 305 VKELMSRLRHNNS-AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQV-TEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~-~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~-~~~~i~ 382 (676)
|+.|+..|..-++ ..+..|+.-+-. .+.+|..--..+-...++-+..++.|.++.||..++..|..+.... ....|+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 5667777765444 455555555544 5677753212233346777888999999999999999988664322 234466
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhccc
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQ 439 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls~~ 439 (676)
.+++.++--+.+ .+...++|..+|+.|--|= .-+.--.-..+-++.|+.||+.+
T Consensus 93 ~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLt-v~~~~~~~l~~~i~~ll~LL~~G 146 (254)
T PF04826_consen 93 MYIPQVCEETVS--SPLNSEVQLAGLRLLTNLT-VTNDYHHMLANYIPDLLSLLSSG 146 (254)
T ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHHHHHccC-CCcchhhhHHhhHHHHHHHHHcC
Confidence 666665555544 3578899999998887661 11111111235677788887764
No 160
>KOG0915|consensus
Probab=68.42 E-value=11 Score=48.08 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=100.5
Q ss_pred hHHHHHHHhc--cCCchh-hhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh
Q psy16387 304 SVKELMSRLR--HNNSAV-KQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE 380 (676)
Q Consensus 304 ~lk~lLs~l~--h~n~~~-RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~ 380 (676)
.++-|..+|- .|.+.. -++|+..+=+.|...|..++..|+..|+.++++-++|.+=.||.+.--.|.-++..-|.++
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence 3556677763 355543 4679999999999888888899999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 381 LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 381 i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
+.-+++-+.--+..+|--|-..||+-|-++.+.|-.-+-
T Consensus 1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988888766644
No 161
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=68.04 E-value=27 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=19.4
Q ss_pred cEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 211 GTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 211 ~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
+++.||-| .+.||| +++.|..-.|.|
T Consensus 75 a~i~IPEl----~~ei~p----g~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPEL----DLEIPP----GPLGGFITTVEG 100 (160)
T ss_pred cEEEeeee----eEEecC----CCCCcEEEehHH
Confidence 56778754 688999 777787777754
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=67.26 E-value=6.2 Score=30.75 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHH
Q psy16387 360 TTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIID 412 (676)
Q Consensus 360 ~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld 412 (676)
.||.++...|..+.. ..++.+.|+.+-++..+...++.-.++||.-|..-|.
T Consensus 2 ~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 699999999977544 5678899999999999999999999999998877664
No 163
>KOG2259|consensus
Probab=66.76 E-value=18 Score=42.69 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=78.1
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh-----c
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL-----A 382 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i-----~ 382 (676)
+..........||+.|+.||-.+=. . -.--..+-+....++.|.+..||.++++|+.......|...- .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e---g---~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE---G---FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc---c---ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 3344566777889999888766542 1 111234778889999999999999999999988877752221 2
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
-+.+-...-|+.||.-++-+||.-|-+.|..+-+..-
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 2445567789999999999999999999877655544
No 164
>KOG1061|consensus
Probab=66.68 E-value=20 Score=42.85 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
...++..++|-++-+|+.|..++..+..-+|.. .|-..++..+--++.|.++.|=+.++..|.+|.+..+....-..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~---~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL---VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChhh---ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 345677789999999999999999999888853 45555666666667799999999999999999886654233233
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
...++-++.-|| ..-.-=-.+.+|+.|.++.|
T Consensus 200 ~~~~~~~lL~al---~ec~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 200 NPQLINKLLEAL---NECTEWGQIFILDCLAEYVP 231 (734)
T ss_pred cHHHHHHHHHHH---HHhhhhhHHHHHHHHHhcCC
Confidence 333333333333 33333444566666666666
No 165
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=66.47 E-value=3.9 Score=50.62 Aligned_cols=16 Identities=25% Similarity=0.713 Sum_probs=12.2
Q ss_pred ccCCCCCCCceeeeee
Q psy16387 135 NPCTTCDGKGQFAQRQ 150 (676)
Q Consensus 135 ~~C~~C~G~G~v~~~~ 150 (676)
-.|+.|.|.|++..+.
T Consensus 739 G~C~~C~G~G~~~~~~ 754 (943)
T PRK00349 739 GRCEACQGDGVIKIEM 754 (943)
T ss_pred CCCCcccccceEEEEe
Confidence 4699999999877443
No 166
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.87 E-value=29 Score=34.81 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=76.6
Q ss_pred hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhh------------hcccccCChHHHHHHHHHHHHHhccCCh-----h-
Q psy16387 318 AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSV------------SPLMLDISATTRKAAVKLLSAMFSQVTE-----E- 379 (676)
Q Consensus 318 ~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~------------~~li~D~~~~VR~~l~~ll~~l~~~~~~-----~- 379 (676)
++|..||.=|..+...-+...+..+...+++.. ..++.|.+..||.++..+|..++....+ +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 579999999988888733345677777887776 4456699999999999999998874321 1
Q ss_pred ---hhcccHHH------HHHHHhhhhccc-----chhhccccHHHHHHHHHhCC--ccchh-hhhhhhHHHHHhcc
Q psy16387 380 ---ELAPLFEI------VVRYLACAMSHL-----DAGVREDSLLIIDVLLEQCP--ILTAN-YRSLLPHFLDMISS 438 (676)
Q Consensus 380 ---~i~p~~~~------l~~~i~~AMTHi-----~~~Ir~dsl~~Ld~ll~~~p--~l~~~-~~k~l~~f~~lls~ 438 (676)
.-..|.++ ++.-+..++.++ ++.+-..-+|.|..|++..| .+..+ -.++++.-..++.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 01123222 233333333332 23344456888999999988 24333 23555555555555
No 167
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=65.69 E-value=6 Score=47.57 Aligned_cols=50 Identities=20% Similarity=0.535 Sum_probs=37.5
Q ss_pred eeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCC
Q psy16387 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGK 143 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 143 (676)
...|..|. ....|+.|...=...+. ..+..|..|+-. ..+...|+.|++.
T Consensus 435 ~l~C~~Cg--------~v~~Cp~Cd~~lt~H~~----~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG--------YIAECPNCDSPLTLHKA----TGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eeecccCC--------CcccCCCCCcceEEecC----CCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 56899995 46789999887432211 257789999877 6778999999876
No 168
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=65.32 E-value=22 Score=34.30 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=40.8
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCC--ccchhhcHHHHHHhhhcccc
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNP--TSVIKSHFSSILDSVSPLML 355 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P--~~~~~~~~~~il~~~~~li~ 355 (676)
+++.+.+.+|.+=..+.|++||..|+.++.+.| ..+-......|.+.+...|.
T Consensus 4 ~~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 4 LDINSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred chHHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 346778899999999999999999999998876 44445566667666665554
No 169
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=64.26 E-value=44 Score=33.51 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=81.6
Q ss_pred HHhccCCchhhhhHHHHHHHhhhcC------------Cc-c--chhhcHHHHHHhhhc-----ccccCChHHHHHHHHHH
Q psy16387 310 SRLRHNNSAVKQDGLSGLLEIITLN------------PT-S--VIKSHFSSILDSVSP-----LMLDISATTRKAAVKLL 369 (676)
Q Consensus 310 s~l~h~n~~~RkdaL~gl~~ll~~~------------P~-~--~~~~~~~~il~~~~~-----li~D~~~~VR~~l~~ll 369 (676)
..+++-|+++|..|+.-|..+|... |. + .+...++.+|.++=. +-...+..+-.+++|.|
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l 126 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL 126 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3457899999999999888887531 11 1 234455555555433 22355788888999999
Q ss_pred HHHhccCChhhhcc-cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 370 SAMFSQVTEEELAP-LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 370 ~~l~~~~~~~~i~p-~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..+....|=+.+.+ +.+-++-.++.=+.|-+++||..+|..+..|+...|.
T Consensus 127 a~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 127 AVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred HHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 99988888777654 5566777777778889999999999999999987664
No 170
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.14 E-value=32 Score=30.56 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 346 ILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 346 il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.++++...+.|...+||...+.+|+.++..-+ ......+.++--..+.+.|=.+=|-.-|.+-|..|.+.+|
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 45677778899999999999999988776444 2222333333333467888899999999999999999999
No 171
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=63.92 E-value=17 Score=43.62 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=67.9
Q ss_pred HHHHHHhccC--CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccc-ccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 306 KELMSRLRHN--NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLM-LDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 306 k~lLs~l~h~--n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li-~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
|++++++.+| ++..|..||.=|=.++.++|.-+...-=.+++..++.++ .|.+..|=..++.+|-.++|.+|. .+.
T Consensus 69 K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~-~l~ 147 (668)
T PF04388_consen 69 KHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS-SLG 147 (668)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-hhh
Confidence 6788888653 466899999999999999996422222224555555544 499999999999999999998885 455
Q ss_pred ccH-HHHHHHHhhhhc
Q psy16387 383 PLF-EIVVRYLACAMS 397 (676)
Q Consensus 383 p~~-~~l~~~i~~AMT 397 (676)
+|+ ++|..|++.+.=
T Consensus 148 ~~L~~Lf~If~Rl~~W 163 (668)
T PF04388_consen 148 PHLPDLFNIFGRLLSW 163 (668)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 555 778899988843
No 172
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=63.67 E-value=30 Score=31.45 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=66.4
Q ss_pred hhhcHHHHHHhhhccccc----CChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 339 IKSHFSSILDSVSPLMLD----ISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 339 ~~~~~~~il~~~~~li~D----~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
+..|+=-|++.+...+.| .+..-|...++-+..+.. .-...+.++.+.+++-+.+|+. .++.|..|++..+.+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALE--IPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHH
Confidence 456666788888888888 567778888888888887 7788999999999999999975 349999999999999
Q ss_pred HHhCCc
Q psy16387 415 LEQCPI 420 (676)
Q Consensus 415 l~~~p~ 420 (676)
+...+.
T Consensus 82 i~~L~~ 87 (107)
T PF08064_consen 82 IKTLDE 87 (107)
T ss_pred HHHCCH
Confidence 999884
No 173
>PRK09687 putative lyase; Provisional
Probab=63.37 E-value=23 Score=37.67 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHH
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAM 372 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l 372 (676)
+..|+..+++-++.+|..|...|-++=...| .+++.+..++.|.+..||.++...|..+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 5677788888888888888888887721222 3666677777999999999999988765
No 174
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.94 E-value=21 Score=41.71 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=56.4
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHH
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAM 372 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l 372 (676)
.+++++|.-+-..--+||+..|+-|.-+... -.++-..-++.++.++...+.|.++.||.+++..|..+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4578888888888889999999877655532 22455678889999999999999999999999999765
No 175
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=60.91 E-value=11 Score=34.31 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=61.7
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
.+.|+.|. .-++....++...-.|. .+...|++-+...+......-|-.++=|++.|+..........|.
T Consensus 3 ~~~L~~L~-----~s~~~I~~lt~~~~~~~-----~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~ 72 (121)
T smart00582 3 EQKLESLN-----NSQESIQTLTKWAIEHA-----SHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFG 72 (121)
T ss_pred HHHHHhcc-----ccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHH
Confidence 34455554 34555666666654443 244456666666666555555666666777776544333222344
Q ss_pred HHHHHHHhhhhcccc----hhhccccHHHHHHHHH--hCC
Q psy16387 386 EIVVRYLACAMSHLD----AGVREDSLLIIDVLLE--QCP 419 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~----~~Ir~dsl~~Ld~ll~--~~p 419 (676)
..+...+-.+++|+. +++|.--.++|+++-+ .||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~~iF~ 112 (121)
T smart00582 73 DELGPVFQDALRDVLGAANDETKKKIRRLLNIWEERGIFP 112 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCC
Confidence 555555555666655 4589999999999998 577
No 176
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=60.59 E-value=9.7 Score=36.79 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeC-CceeeEeCCCCCCcceE
Q psy16387 65 FTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTG-PFVMRSTCRYCKGSRNL 132 (676)
Q Consensus 65 Lee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G-~~~~~~~C~~C~G~G~~ 132 (676)
|.++..+.... .....|..|.|.+ -..|..|+|+=.+....+ .......|+.|+-.|-+
T Consensus 86 L~~lL~~~~~~---~~~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 86 LRKLLKGIRAR---AGGGVCEGCGGAR------FVPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred HHHHHhhcccc---cCCCCCCCCCCcC------eEECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 56666655221 1234688888765 456999999986644332 12245789999887753
No 177
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=59.59 E-value=19 Score=35.85 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=58.0
Q ss_pred HHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccc
Q psy16387 344 SSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILT 422 (676)
Q Consensus 344 ~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~ 422 (676)
..-++.|+.+..+.+..||.++++++..++. ...+-| ...+.++-+-.|--.+.||.-|...|..|-+.+|.++
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~---qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILR---QGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh---cCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 3455666778889999999999999998864 112222 1256677777888999999999999999999999865
No 178
>KOG2933|consensus
Probab=59.12 E-value=27 Score=37.81 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=71.9
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.|+..|.+|...+=-...|+|..++-+..-||+. +...+..++-.++.-+-..-..|=+++.-.+..|+.........
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~-l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPES-LNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566677777777778999999999999999843 33333333333333333444555556666677777766654444
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
-++.++..+.--=.--..=||+||.+.|.-+..+.-
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt 202 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT 202 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC
Confidence 344433333221111223479999999999999854
No 179
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.86 E-value=23 Score=41.19 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=69.6
Q ss_pred HHHHhhhcc-cccCChHHHHHHHHHHHHHhccCCh---hhhcccHHH----------HHHHHhhhhcccch------h--
Q psy16387 345 SILDSVSPL-MLDISATTRKAAVKLLSAMFSQVTE---EELAPLFEI----------VVRYLACAMSHLDA------G-- 402 (676)
Q Consensus 345 ~il~~~~~l-i~D~~~~VR~~l~~ll~~l~~~~~~---~~i~p~~~~----------l~~~i~~AMTHi~~------~-- 402 (676)
.++..+++. ++|.+.+||+|++-.|..++..-+. ..+.|..+. +.+-|.||=|-... .
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~ 630 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALM 630 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHh
Confidence 478888888 8999999999999998876653322 122332222 33444444333322 1
Q ss_pred ------hccccHHHHH-HHHHhCCccchhhhhhhhHHHHHhccccccc--------------ccceeeEEecCCC
Q psy16387 403 ------VREDSLLIID-VLLEQCPILTANYRSLLPHFLDMISSQTRSH--------------EQARQLTVDLDSR 456 (676)
Q Consensus 403 ------Ir~dsl~~Ld-~ll~~~p~l~~~~~k~l~~f~~lls~~~~~~--------------~~~~~ltv~~~~~ 456 (676)
||+.|.--+. +|+++-|.|..+...|.++|..+|--.+.+. .-+|-+|+++...
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~na 705 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNA 705 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEecc
Confidence 3333332222 4556666777788889999999998766532 1377778877443
No 180
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=57.99 E-value=14 Score=32.71 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=44.3
Q ss_pred CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc
Q psy16387 316 NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS 374 (676)
Q Consensus 316 n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~ 374 (676)
+...|..|+.||-.++.++|- .++..+-.+|..++....| ...||...-+.|...-.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py-~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPY-DVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S---SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 345688999999999999996 4688999999999999997 88888888888876644
No 181
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.88 E-value=18 Score=33.75 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHHh-ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh
Q psy16387 305 VKELMSRL-RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373 (676)
Q Consensus 305 lk~lLs~l-~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~ 373 (676)
++-|...| +..++.+-.=|+.-|-+.+..||...-...--..=..|..|+.+.|+.||.+++..++.++
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45555555 3445556666888888999888863111122234567889999999999999999998764
No 182
>KOG0392|consensus
Probab=57.49 E-value=16 Score=45.88 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=94.1
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
..++..+++-...+|-.|.+-+.+...+.- ..-+...++++.|+.-|.+..||++....+=.++.......+-||.
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~----~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~ 894 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSAT----RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYN 894 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccc
Confidence 344555567777899999999999886543 4567789999999999999999999888887777777888899999
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
++|+.=+..-|.--..+||.-|.+++..|+-..|
T Consensus 895 ~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 895 PLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred eeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999988766
No 183
>KOG1820|consensus
Probab=55.86 E-value=81 Score=38.74 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=80.0
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
+++...+-|-+-+.|+|||.++.+++++...+......+.+.--+.-+..|.+..|-......|..|+.+++.. ..+|.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHH
Confidence 45667777888889999999999999887722323344444444444556999999999999999998877765 55555
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
..+..=+.-..--.-+.+|.-.++++|-.+..+|
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~ 368 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP 368 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc
Confidence 5444444444445566777777888888877666
No 184
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=55.69 E-value=25 Score=43.62 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~ 373 (676)
.-++..|++-++.+|.+|+.-|..+- +. +.+..++.|.+..||.++...|..+.
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~---~~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVD---DV-----------ESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccc---Cc-----------HHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 45667789999999999999988741 11 11234566666666666666665553
No 185
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.52 E-value=96 Score=29.29 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=69.2
Q ss_pred HHHHHHh-ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh---
Q psy16387 306 KELMSRL-RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL--- 381 (676)
Q Consensus 306 k~lLs~l-~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i--- 381 (676)
.+++.+. .+.+...--++...|-|++.+.+ ......+..+...|...++.|--.++.||..+...+.+.--
T Consensus 7 ~~li~kATs~~~~~~Dw~~~l~icD~i~~~~-----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 7 TELIEKATSESLPSPDWSLILEICDLINSSP-----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHHT-TTSSS--HHHHHHHHHHHHTST-----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444443 33444444455666666666554 23345566666666667777888888888888876654332
Q ss_pred --cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 382 --APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 382 --~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
..|++.+.--+...-++....||+-.+.+|..+-+.|+
T Consensus 82 ~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 82 ASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp TSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 22556666656666666655599999999999999985
No 186
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.15 E-value=25 Score=41.77 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=60.7
Q ss_pred hhhHHHHH----HHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 302 KLSVKELM----SRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 302 ~l~lk~lL----s~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+.++.+|. .++.+-++-+|..||+++..++..+. ..+..-..+++-+...+.|.+..||+.+++|+..++-..|
T Consensus 341 ~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s--k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 341 KQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS--KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc--cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 33445544 45678999999999999999996543 3456677899999999999999999999999998876666
Q ss_pred hh
Q psy16387 378 EE 379 (676)
Q Consensus 378 ~~ 379 (676)
=.
T Consensus 419 F~ 420 (1128)
T COG5098 419 FA 420 (1128)
T ss_pred hh
Confidence 33
No 187
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=54.44 E-value=23 Score=39.86 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=73.3
Q ss_pred HHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHH--HHhccCChhhhcccHHHHHHHHhh-hhccc
Q psy16387 323 GLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLS--AMFSQVTEEELAPLFEIVVRYLAC-AMSHL 399 (676)
Q Consensus 323 aL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~--~l~~~~~~~~i~p~~~~l~~~i~~-AMTHi 399 (676)
.|..+.+++..-|..-.......+...++..+....-.|-..++.++. .+...+ .+.-...++++...+.. |.+|-
T Consensus 275 FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li-~~~~~~i~p~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 275 FLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI-SQNSRVILPIIFPALYRNSKNHW 353 (409)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH-HCTHHHHHHHHHHHHSSTTSS-S
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH-HhChHHHHHHHHHHHHHHHHHHh
Confidence 678889999776655556778889999999999999999999999984 333312 22333445555555544 67899
Q ss_pred chhhccccHHHHHHHHHhCCcc
Q psy16387 400 DAGVREDSLLIIDVLLEQCPIL 421 (676)
Q Consensus 400 ~~~Ir~dsl~~Ld~ll~~~p~l 421 (676)
+..||.-|..+|.+|++.-|.+
T Consensus 354 n~~Vr~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILMEMDPKL 375 (409)
T ss_dssp STTHHHHHHHHHHHHHTTSHHH
T ss_pred hHHHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999999999954
No 188
>KOG1949|consensus
Probab=54.10 E-value=19 Score=42.72 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=53.9
Q ss_pred hHHHHHHHh-----ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHH
Q psy16387 304 SVKELMSRL-----RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAM 372 (676)
Q Consensus 304 ~lk~lLs~l-----~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l 372 (676)
+++++|.+. ++-+..||.....||..++. +|.+ ..-+..+|+++-+++.|.+..||-|++.+|..|
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 466777654 45677899999999999984 4643 456778999999999999999999999999765
No 189
>KOG1062|consensus
Probab=54.01 E-value=59 Score=39.30 Aligned_cols=120 Identities=19% Similarity=0.395 Sum_probs=94.8
Q ss_pred HHHH-hccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 308 LMSR-LRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 308 lLs~-l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
.|.+ +....-+.|-=||+.|...+.+.| ...+.|-..|++. +-|.|.++|+.++.|+-.+ +.++.++....
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~-~avqrHr~tIleC----L~DpD~SIkrralELs~~l---vn~~Nv~~mv~ 388 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDP-TAVQRHRSTILEC----LKDPDVSIKRRALELSYAL---VNESNVRVMVK 388 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCc-HHHHHHHHHHHHH----hcCCcHHHHHHHHHHHHHH---hccccHHHHHH
Confidence 3455 355566789999999999999998 4678899888765 6799999999999999887 67889999999
Q ss_pred HHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc--------------chhh--hhhhhHHHHHhccc
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL--------------TANY--RSLLPHFLDMISSQ 439 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l--------------~~~~--~k~l~~f~~lls~~ 439 (676)
-++.|+-+. .++.+.|-..-+..+.|.|..- .+.+ .++..||+-+|+..
T Consensus 389 eLl~fL~~~----d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 389 ELLEFLESS----DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHhc----cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 999998876 7888888777777777765421 1122 25888999999887
No 190
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=53.92 E-value=26 Score=46.78 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=101.1
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+..+...++|-|..++++|..-|-.+.+.++...-..-...+++-++.++.+.+..||++.-..|..++.....++..-
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46777888899999999999999999998887432222334467777788889999999999988888876555555444
Q ss_pred cHHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCCccch-hhhhhhhHHHHHhccccccc
Q psy16387 384 LFEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA-NYRSLLPHFLDMISSQTRSH 443 (676)
Q Consensus 384 ~~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~-~~~k~l~~f~~lls~~~~~~ 443 (676)
+... .+..+...++.-+.+|++.++..|.-|+.+...... .-...++-+..+|..+....
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH
Confidence 3433 455566677888999999999999999998663211 11244677777777666433
No 191
>KOG3613|consensus
Probab=52.34 E-value=29 Score=45.07 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHhc-----cCC--------chhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccc-cCChHHHHHHH
Q psy16387 301 RKLSVKELMSRLR-----HNN--------SAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLML-DISATTRKAAV 366 (676)
Q Consensus 301 r~l~lk~lLs~l~-----h~n--------~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~-D~~~~VR~~l~ 366 (676)
-+-+++||+.+.. ..| ...|.-.|.-+.=++=+.|-+--..++..|.+.++.++. +.+..||++++
T Consensus 1472 d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vF 1551 (1749)
T KOG3613|consen 1472 DKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVF 1551 (1749)
T ss_pred CchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHH
Confidence 3446888887621 111 346777888888888777876667899999999999999 99999999999
Q ss_pred HHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhh--------------------ccccHHHHHHHHHhCCc-c--c-
Q psy16387 367 KLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGV--------------------REDSLLIIDVLLEQCPI-L--T- 422 (676)
Q Consensus 367 ~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~I--------------------r~dsl~~Ld~ll~~~p~-l--~- 422 (676)
-+++.++=.++++-+.+.-|+++.=+--+.+-.-.+- ..+|.|+||+++--=|. + .
T Consensus 1552 L~~RVLLLR~Sp~hL~~LWPImv~ELv~vf~q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlLDll~~Lp~~~lp~Fq 1631 (1749)
T KOG3613|consen 1552 LFFRVLLLRISPDHLTSLWPIMVYELVQVFLQLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLLDLLLLLPAGKLPQFQ 1631 (1749)
T ss_pred HHHHHHHHhcCHhhcccchHHHHHHHHHHHHHHHhhhccccccccccccCchHHHHHHHHHHHHHHHHHhcCcccCccce
Confidence 9999999899999999999987765544433333332 46777888877654321 1 1
Q ss_pred -hhhhhhhhHHHHHhcccccccccceeeEEecCCCcchhHHHHHHHHHHHHHHHH
Q psy16387 423 -ANYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSMLLA 476 (676)
Q Consensus 423 -~~~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~~~R~kvL~~L~~fL~~ 476 (676)
-.|+=+ .+ ..+. +-.+.++-.+..+..|..||+++|..
T Consensus 1632 m~rWaFv-------~~--~~~~-------~~~s~~~~~~~~~kp~verl~ell~~ 1670 (1749)
T KOG3613|consen 1632 MYRWAFV-------VS--PPRG-------RLPSEKADKTEEFKPVVERLAELLDK 1670 (1749)
T ss_pred eeeEEEE-------ec--CCcc-------ccccccccccchhhHHHHHHHHHHHh
Confidence 124333 00 0000 00122344667889999999999987
No 192
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=52.28 E-value=4.7 Score=48.54 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=0.0
Q ss_pred eHHhHhcCce--eeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCC
Q psy16387 64 TFTQAARGVN--KDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCD 141 (676)
Q Consensus 64 sLee~~~G~~--k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~ 141 (676)
++.+|+.-.. .++.+- ...|+.|.-.. ....|+.|+..=. ....|+.|+-. +....|++|.
T Consensus 637 ~i~~A~~~~~g~i~vei~-~r~Cp~Cg~~t-----~~~~Cp~CG~~T~---------~~~~Cp~C~~~--~~~~~C~~C~ 699 (900)
T PF03833_consen 637 DIQKAAKKGKGTIEVEIG-RRRCPKCGKET-----FYNRCPECGSHTE---------PVYVCPDCGIE--VEEDECPKCG 699 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHhcCCCeeEEeee-cccCcccCCcc-----hhhcCcccCCccc---------cceeccccccc--cCcccccccc
Confidence 3555665543 444444 35699996543 4678999966532 24579999763 3356999998
Q ss_pred CCceee
Q psy16387 142 GKGQFA 147 (676)
Q Consensus 142 G~G~v~ 147 (676)
-.....
T Consensus 700 ~~~~~~ 705 (900)
T PF03833_consen 700 RETTSY 705 (900)
T ss_dssp ------
T ss_pred ccCccc
Confidence 664433
No 193
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=52.27 E-value=6.4 Score=51.72 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=24.9
Q ss_pred ceeccccCceeEEEEeeCCce-eeEeCCCCCCcceE
Q psy16387 98 AQKCHYCNGTGLETISTGPFV-MRSTCRYCKGSRNL 132 (676)
Q Consensus 98 ~~~C~~C~G~G~~~~~~G~~~-~~~~C~~C~G~G~~ 132 (676)
.-.|+.|.|.|++...+.++- ...+|+.|+|+.+.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 445888888887766665543 56788888888764
No 194
>PRK14873 primosome assembly protein PriA; Provisional
Probab=52.12 E-value=15 Score=44.07 Aligned_cols=59 Identities=22% Similarity=0.485 Sum_probs=40.4
Q ss_pred cCceeeeeeee-----eeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCC
Q psy16387 70 RGVNKDVVLKI-----MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGK 143 (676)
Q Consensus 70 ~G~~k~i~~~r-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 143 (676)
.| ..-+-++| ...|..|. ....|+.|.+.=..... .....|..|+-. . ....|+.|++.
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg--------~~~~C~~C~~~L~~h~~----~~~l~Ch~CG~~-~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCR--------TPARCRHCTGPLGLPSA----GGTPRCRWCGRA-A-PDWRCPRCGSD 431 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCc--------CeeECCCCCCceeEecC----CCeeECCCCcCC-C-cCccCCCCcCC
Confidence 35 55555553 45899994 46789999886443211 135679999875 2 58899999875
No 195
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=52.03 E-value=35 Score=39.95 Aligned_cols=105 Identities=18% Similarity=0.087 Sum_probs=77.8
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh-hcccHH
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE-LAPLFE 386 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~-i~p~~~ 386 (676)
+.++.++-.+..|-+++..|.+-+...|...... ..+.-..=+++|.+..||..+.+.|..+....|... |+.|++
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~---~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKI---LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhh---hcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3467788899999999999999999999532221 256666778899999999999999999988777544 677777
Q ss_pred HHHHHHh-hhhcccchhhccccHHHHHHHHH
Q psy16387 387 IVVRYLA-CAMSHLDAGVREDSLLIIDVLLE 416 (676)
Q Consensus 387 ~l~~~i~-~AMTHi~~~Ir~dsl~~Ld~ll~ 416 (676)
.++..|. -+-|-++- ||.=|++.|.-|..
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 7666653 34455555 77777776655543
No 196
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=52.03 E-value=10 Score=45.78 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=7.4
Q ss_pred ccCCCCCCCceeeee
Q psy16387 135 NPCTTCDGKGQFAQR 149 (676)
Q Consensus 135 ~~C~~C~G~G~v~~~ 149 (676)
-+|++|.|.|+++-+
T Consensus 731 GRCe~C~GdG~ikIe 745 (935)
T COG0178 731 GRCEACQGDGVIKIE 745 (935)
T ss_pred cCCccccCCceEEEE
Confidence 355555555544433
No 197
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=51.29 E-value=23 Score=33.28 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=16.3
Q ss_pred eeEEEEEeCCCCcCCcEEEEc
Q psy16387 149 RQTITVPVPAGVEDGQTVRMN 169 (676)
Q Consensus 149 ~~~l~V~IP~Gv~~G~~irl~ 169 (676)
...+++.-+.+++.||.+.+.
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEE
Confidence 456777778889999988775
No 198
>KOG1943|consensus
Probab=50.51 E-value=57 Score=40.60 Aligned_cols=116 Identities=20% Similarity=0.326 Sum_probs=74.6
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHH---------------------------------hh
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILD---------------------------------SV 350 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~---------------------------------~~ 350 (676)
-+++||+-++|--..+|-.|..|+..+.+.-|.++...-++++++ .+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 378999999999999999999999999988886544444444444 34
Q ss_pred hcccc-----cC-------ChHHHHHHHHHHHHHhccCChhhhcccHH-HHHHHHhhhhcccchhhccccHHHHHHHHHh
Q psy16387 351 SPLML-----DI-------SATTRKAAVKLLSAMFSQVTEEELAPLFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 351 ~~li~-----D~-------~~~VR~~l~~ll~~l~~~~~~~~i~p~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~ 417 (676)
.|+|. |. -..||+|+-=+..++.-+-.+..|+|+.. ++..-+..|.=--...+|+-|-..|.-.+-+
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 44432 22 23566666666666666666666666665 4444445555555556666666666655555
Q ss_pred CC
Q psy16387 418 CP 419 (676)
Q Consensus 418 ~p 419 (676)
.+
T Consensus 502 ~~ 503 (1133)
T KOG1943|consen 502 QG 503 (1133)
T ss_pred CC
Confidence 33
No 199
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=50.13 E-value=55 Score=35.49 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=78.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.+++..+.+-+-.||-.-|.-+++.+-.-+. .+...+..++.++.|.+=|+..++-+..+++|..+-..+..+ -|
T Consensus 99 ~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F 174 (307)
T PF04118_consen 99 SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YF 174 (307)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HH
Confidence 46788888888999999999999998865554 567889999999999999999999999999999988777766 22
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..-+-+-+ + -+|++|.-|+.+| +.+.|.
T Consensus 175 ~~~lwl~i---i--~sp~~Rl~al~~l---~~~l~~ 202 (307)
T PF04118_consen 175 WQCLWLCI---I--TSPSRRLGALNYL---LRRLPK 202 (307)
T ss_pred HHHHHHHH---h--cCcchhHHHHHHH---HHhCCc
Confidence 22211111 1 3788898777654 555553
No 200
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.80 E-value=14 Score=42.69 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=38.7
Q ss_pred cCceeeeeeee-----eeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCC
Q psy16387 70 RGVNKDVVLKI-----MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGK 143 (676)
Q Consensus 70 ~G~~k~i~~~r-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 143 (676)
.|...-+-++| ...|..|. ....|+.|.+.=..... .....|..|+-+ ..+...|+.|.+.
T Consensus 197 ~g~qvLvflnrrGya~~~~C~~Cg--------~~~~C~~C~~~l~~h~~----~~~l~Ch~Cg~~-~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 197 AGEQSILFLNRRGYSKNLLCRSCG--------YILCCPNCDVSLTYHKK----EGKLRCHYCGYQ-EPIPKTCPQCGSE 262 (505)
T ss_pred cCCcEEEEEeCCcCCCeeEhhhCc--------CccCCCCCCCceEEecC----CCeEEcCCCcCc-CCCCCCCCCCCCC
Confidence 35444444443 45899995 45789999875332221 135679999633 3456899999875
No 201
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=49.67 E-value=38 Score=30.59 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=70.8
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
..|+.|..-+ .-++.+..|..+.-.|. .+...|++.+...+.-....-|-.++=|++.|+.......-..|..
T Consensus 6 ~~l~~L~~~~--~S~~~I~~lt~~a~~~~-----~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 6 ALLEKLTFNK--NSQPSIQTLTKLAIENR-----KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred HHHHHHHcCc--ccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHH
Confidence 4455555443 45566777777775543 4666677777777766666777777888888877665544444444
Q ss_pred HHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.+.--+..|+....+++|.-=.++++++-+..+
T Consensus 79 ~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~~ 111 (114)
T cd03562 79 FLVPLFLDAYEKVDEKTRKKLERLLNIWEERFV 111 (114)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCCC
Confidence 445555677788899999888888888776654
No 202
>PRK05580 primosome assembly protein PriA; Validated
Probab=49.22 E-value=22 Score=42.68 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=39.6
Q ss_pred cCceeeeeeee-----eeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCC
Q psy16387 70 RGVNKDVVLKI-----MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGK 143 (676)
Q Consensus 70 ~G~~k~i~~~r-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 143 (676)
.|...-+-++| ...|..|. ....|+.|.+.=..... .....|..|+.+ ..+...|+.|++.
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg--------~~~~C~~C~~~l~~h~~----~~~l~Ch~Cg~~-~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCG--------WVAECPHCDASLTLHRF----QRRLRCHHCGYQ-EPIPKACPECGST 430 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCc--------CccCCCCCCCceeEECC----CCeEECCCCcCC-CCCCCCCCCCcCC
Confidence 34445555554 57899995 35689999884222111 235679999754 4456899999875
No 203
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=47.14 E-value=58 Score=32.92 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=40.0
Q ss_pred eccccCceeEEEE--ee-CC-c----eeeEeCCCCCCcceEec-------------ccCCCCCCCceeeee------eEE
Q psy16387 100 KCHYCNGTGLETI--ST-GP-F----VMRSTCRYCKGSRNLIK-------------NPCTTCDGKGQFAQR------QTI 152 (676)
Q Consensus 100 ~C~~C~G~G~~~~--~~-G~-~----~~~~~C~~C~G~G~~i~-------------~~C~~C~G~G~v~~~------~~l 152 (676)
.|+.|++.|.... .. =| | .+...|+.|+=+-.-++ ...+.=-.+-+++.+ -.+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 4788877774321 12 23 2 36788999987743331 111111222333322 246
Q ss_pred EEEeCCC-CcCCcEEEEcc
Q psy16387 153 TVPVPAG-VEDGQTVRMNV 170 (676)
Q Consensus 153 ~V~IP~G-v~~G~~irl~g 170 (676)
.++|||| ...|..-.++|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 7788888 67888888886
No 204
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.39 E-value=19 Score=39.09 Aligned_cols=45 Identities=16% Similarity=0.453 Sum_probs=25.9
Q ss_pred ceeccccCceeEE--EEeeC-CceeeEeCCCCCCcceEecccCCCCCC
Q psy16387 98 AQKCHYCNGTGLE--TISTG-PFVMRSTCRYCKGSRNLIKNPCTTCDG 142 (676)
Q Consensus 98 ~~~C~~C~G~G~~--~~~~G-~~~~~~~C~~C~G~G~~i~~~C~~C~G 142 (676)
...||.|++.=.. .+..+ .+...-.|..|.-.=...+..|+.|..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4556666655311 11111 123456788888777777888888864
No 205
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.12 E-value=1.2e+02 Score=36.43 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=72.5
Q ss_pred cHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh-cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 342 HFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL-APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 342 ~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i-~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
|-..++..+-..+.+ +.-|-+++.||..++...|+..= -..-++|--=+.|.+.=-++-|=.-||.+|-.||=+.|.
T Consensus 67 ~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred cHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 445566666666664 57899999999988887774331 112234444566777777777777899999999999996
Q ss_pred c-chhhhhhhhHHHHHhcccccc
Q psy16387 421 L-TANYRSLLPHFLDMISSQTRS 442 (676)
Q Consensus 421 l-~~~~~k~l~~f~~lls~~~~~ 442 (676)
. ..+...||.-|.-+++|....
T Consensus 145 ~l~~~L~~Lf~If~Rl~~W~~~~ 167 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLLSWERKN 167 (668)
T ss_pred hhhHHHHHHHHHHHHHHHcccCC
Confidence 4 456789999999999999853
No 206
>KOG0213|consensus
Probab=46.08 E-value=73 Score=38.42 Aligned_cols=107 Identities=13% Similarity=0.269 Sum_probs=74.2
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccC--ChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDI--SATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~--~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+-.+|-+.|.=++..|++||+.|++--... ...+++++++|++.+. |..=|+-+++++..|+-+++ +..+
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~-------ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklD-dlvr 436 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNF-------GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLD-DLVR 436 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhc-ccch
Confidence 455677778888999999999999876333 4456899999988865 67789999999998887665 2223
Q ss_pred ccHH-----------------------HH------------HHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 383 PLFE-----------------------IV------------VRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 383 p~~~-----------------------~l------------~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
||+. +| ++-++--.+|+.+-||+-.-....++..++.
T Consensus 437 pYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalg 508 (1172)
T KOG0213|consen 437 PYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG 508 (1172)
T ss_pred hceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC
Confidence 3321 11 1122222367777777777777777777755
No 207
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=45.56 E-value=70 Score=33.72 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCc-cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh---hh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPT-SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE---EE 380 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~-~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~---~~ 380 (676)
+.-+.+.+...++++|..||.-|..+=...+- ..+..+...+++.+... .-+..|..+.+++|..+ .+.. ..
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nL--tv~~~~~~~ 131 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNL--TVTNDYHHM 131 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHcc--CCCcchhhh
Confidence 34455677889999999999999877543331 13344555555554432 24778888999999876 2333 44
Q ss_pred hcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhcccc
Q psy16387 381 LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISSQT 440 (676)
Q Consensus 381 i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~~~ 440 (676)
++..++-++--+.++ +..+|.-+|++|--|=+ .|..... ..+.+..|+.++....
T Consensus 132 l~~~i~~ll~LL~~G----~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~ 188 (254)
T PF04826_consen 132 LANYIPDLLSLLSSG----SEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSE 188 (254)
T ss_pred HHhhHHHHHHHHHcC----ChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCC
Confidence 556665554444433 66788778876655433 3433322 2467888887776554
No 208
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=44.98 E-value=9 Score=34.30 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=8.8
Q ss_pred cceeccccCceeEE
Q psy16387 97 KAQKCHYCNGTGLE 110 (676)
Q Consensus 97 ~~~~C~~C~G~G~~ 110 (676)
....|.+|+|.|..
T Consensus 4 iS~~c~~c~g~g~a 17 (95)
T PF03589_consen 4 ISDSCRRCAGDGAA 17 (95)
T ss_pred cCCCcCccCCccee
Confidence 34567777777743
No 209
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=44.27 E-value=39 Score=35.72 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=50.6
Q ss_pred cCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc--cchhhhhhhhH
Q psy16387 356 DISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI--LTANYRSLLPH 431 (676)
Q Consensus 356 D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~--l~~~~~k~l~~ 431 (676)
|..+.-|++|-.-|+..+.+.| -|.+..+.++.--++--.+.++.|+|+.|...++.|+. +..+|..|.+.
T Consensus 182 dp~~IT~edLk~~L~~cl~s~~-----~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 182 DPYGITREDLKRALRNCLSSTP-----LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred CCCCCCHHHHHHHHHHHhcCcH-----hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 4445566666666666555444 56677788888888888999999999999999999994 33445554443
No 210
>KOG1077|consensus
Probab=44.25 E-value=1.6e+02 Score=35.51 Aligned_cols=120 Identities=21% Similarity=0.342 Sum_probs=88.5
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCc-cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPT-SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~-~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
|-+-+.|.-.+.|-=||..+-.++++.+. +.+.-|...|+.+ |=++.|-+||+-++.||-.+ ++.+..+-.+.
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~s---LkterDvSirrravDLLY~m---cD~~Nak~IV~ 407 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINS---LKTERDVSIRRRAVDLLYAM---CDVSNAKQIVA 407 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHH---hchhhHHHHHH
Confidence 33456788899999999999999998875 2455677777765 34689999999999999887 56677777777
Q ss_pred HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhc
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMIS 437 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls 437 (676)
=++-||.+ ....||+|=..=..+|-|.|..=..-++.+.=+.+.+-|
T Consensus 408 elLqYL~t----Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 408 ELLQYLET----ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred HHHHHHhh----cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 88888876 588999997777788888776211222445545555554
No 211
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=43.30 E-value=12 Score=38.87 Aligned_cols=9 Identities=56% Similarity=1.350 Sum_probs=3.9
Q ss_pred eccccCcee
Q psy16387 100 KCHYCNGTG 108 (676)
Q Consensus 100 ~C~~C~G~G 108 (676)
+||+|+|+|
T Consensus 40 tCPTCqGtG 48 (238)
T PF07092_consen 40 TCPTCQGTG 48 (238)
T ss_pred cCCCCcCCc
Confidence 344444444
No 212
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=43.21 E-value=47 Score=30.80 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=17.7
Q ss_pred cCceeeee-eeeeeecCCCCCCCcCCCCcceeccccCcee
Q psy16387 70 RGVNKDVV-LKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG 108 (676)
Q Consensus 70 ~G~~k~i~-~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G 108 (676)
.|++.++. ++-...|..|+-...........||.|++..
T Consensus 59 ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 59 KDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 34444444 2345667777644332222222355555443
No 213
>PF04598 Gasdermin: Gasdermin family; InterPro: IPR007677 The precise function of this protein is unknown. However, it is thought that this entry represents the Gasdermin family which plays a role as secretory or metabolic product involved in secretory pathway and includes Gasdermin, Non-syndromic hearing impairment protein 5 (DFNA5)and Pejvakin. It may also play a role in achieving and maintaining the final differentiation state of epithelial cells [, ]. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [].
Probab=42.87 E-value=5.7e+02 Score=29.33 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=15.9
Q ss_pred eEEEEecCCCCcccCCCcEEEEcCCc
Q psy16387 221 DQTVLFLEQGSVKLSSHQIMVKTGHK 246 (676)
Q Consensus 221 ~~~v~Ip~~~~~gt~~g~~lrl~G~G 246 (676)
...|+||++-+ -.-.-.++.|++.|
T Consensus 199 ~k~vtIP~gtv-lAyrv~qL~i~~dg 223 (456)
T PF04598_consen 199 KKTVTIPKGTV-LAYRVKQLVIKEDG 223 (456)
T ss_pred cceEEeCCCCc-ceeeeEEEEEcCCc
Confidence 37899999332 22345567777776
No 214
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=42.14 E-value=1.5e+02 Score=30.09 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=4.6
Q ss_pred eeecCCCCC
Q psy16387 81 MDTCTRCHG 89 (676)
Q Consensus 81 ~~~C~~C~G 89 (676)
.+.|+.|+-
T Consensus 98 yV~C~~C~~ 106 (201)
T PRK12336 98 YVICSECGL 106 (201)
T ss_pred eEECCCCCC
Confidence 455555543
No 215
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=41.36 E-value=9.2 Score=34.24 Aligned_cols=10 Identities=40% Similarity=1.228 Sum_probs=5.6
Q ss_pred ecCCCCCCCc
Q psy16387 83 TCTRCHGEKC 92 (676)
Q Consensus 83 ~C~~C~GtG~ 92 (676)
.|..|+|.|.
T Consensus 7 ~c~~c~g~g~ 16 (95)
T PF03589_consen 7 SCRRCAGDGA 16 (95)
T ss_pred CcCccCCcce
Confidence 4555666653
No 216
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=41.33 E-value=86 Score=38.08 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHH
Q psy16387 310 SRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVV 389 (676)
Q Consensus 310 s~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~ 389 (676)
..+.|-++-|||.|...+.++....|. ..+. .-.+.-...++.|.|+.|=.+++..|..| .++...+|+..+.
T Consensus 134 ~~l~d~~ayVRk~Aalav~kly~ld~~-l~~~--~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i----~~e~a~~~~~~~~ 206 (757)
T COG5096 134 KLLTDPHAYVRKTAALAVAKLYRLDKD-LYHE--LGLIDILKELVADSDPIVIANALASLAEI----DPELAHGYSLEVI 206 (757)
T ss_pred HHccCCcHHHHHHHHHHHHHHHhcCHh-hhhc--ccHHHHHHHHhhCCCchHHHHHHHHHHHh----chhhhhhHHHHHH
Confidence 445666666777776666666655552 1111 11223333455566666666666666655 2234445554444
Q ss_pred HHH
Q psy16387 390 RYL 392 (676)
Q Consensus 390 ~~i 392 (676)
..|
T Consensus 207 ~~i 209 (757)
T COG5096 207 LRI 209 (757)
T ss_pred HHh
Confidence 443
No 217
>KOG1293|consensus
Probab=41.26 E-value=89 Score=37.03 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=65.9
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHH-HHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSS-ILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~-il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
.++-+.+.+...-.++|+.++.-|+++.=.--.......++. =.+.++.++.|.|-.|-++.+.||+-+.+
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c-------- 533 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC-------- 533 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc--------
Confidence 467788888999999999999999998855443222233333 35678889999999999999999998755
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
++-+.+|.|++-+|.
T Consensus 534 -----------------------~~~~svdfll~~~~~ 548 (678)
T KOG1293|consen 534 -----------------------NSRKSVDFLLEKFKD 548 (678)
T ss_pred -----------------------CcHHHHHHHHHhhhH
Confidence 455667888888884
No 218
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=39.53 E-value=1.2e+02 Score=29.49 Aligned_cols=88 Identities=16% Similarity=0.319 Sum_probs=61.1
Q ss_pred HHHHHHHhcc-CCchhhhhHHHHHHHhh---hcCCc---cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRH-NNSAVKQDGLSGLLEII---TLNPT---SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h-~n~~~RkdaL~gl~~ll---~~~P~---~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+..+++.+.. -+..+++-|+.-|..++ ..+|. ++...++..+++.++.++.| ..+....+.+|..+++. -
T Consensus 69 ~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~-~ 145 (165)
T PF08167_consen 69 LRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH-H 145 (165)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH-C
Confidence 3445566644 33445666555555544 66775 35667889999999998887 77888899999888884 4
Q ss_pred hhhhcccHHHHHHHHhhh
Q psy16387 378 EEELAPLFEIVVRYLACA 395 (676)
Q Consensus 378 ~~~i~p~~~~l~~~i~~A 395 (676)
+...+||..-+-..+..-
T Consensus 146 ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 146 PTTFRPFANKIESALLSL 163 (165)
T ss_pred CccccchHHHHHHHHHHH
Confidence 578889988776665543
No 219
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=38.29 E-value=2.3e+02 Score=30.79 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=98.2
Q ss_pred hhhhhHHHHHHHhccC--CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 300 QRKLSVKELMSRLRHN--NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 300 ~r~l~lk~lLs~l~h~--n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+++..+---|+|+=|. -+.|=+.||.=..-++..--.+-+...+.-.+..+.|++.-.+-+||-.++++++..+-.++
T Consensus 50 P~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~ 129 (307)
T PF04118_consen 50 PHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLG 129 (307)
T ss_pred CcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3555555557777444 35688999998888886655556677888899999999999999999999999974333588
Q ss_pred hhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 378 EEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 378 ~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
+ .+.|.++-+++=+..||--=..++....+++|+.+-+.+.
T Consensus 130 ~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 130 P-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred H-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 7 9999999999999999997799999999999999998876
No 220
>PF14353 CpXC: CpXC protein
Probab=37.53 E-value=38 Score=31.49 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=8.0
Q ss_pred eeccccCceeEE
Q psy16387 99 QKCHYCNGTGLE 110 (676)
Q Consensus 99 ~~C~~C~G~G~~ 110 (676)
.+||.|+..+..
T Consensus 2 itCP~C~~~~~~ 13 (128)
T PF14353_consen 2 ITCPHCGHEFEF 13 (128)
T ss_pred cCCCCCCCeeEE
Confidence 367777777754
No 221
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=37.32 E-value=68 Score=26.76 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=49.2
Q ss_pred Hhhhccc-ccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhh
Q psy16387 348 DSVSPLM-LDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYR 426 (676)
Q Consensus 348 ~~~~~li-~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~ 426 (676)
+.+...+ .|.+..||..++.+|..+ .. +-.+.++..++.|=++.||.-+...|..+ +..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---------~~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----GD-------PEAIPALIELLKDEDPMVRRAAARALGRI---------GDP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----TH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC---------HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh---------CCH
Confidence 4455555 799999999999998844 21 13456666677899999999999888765 234
Q ss_pred hhhhHHHHHhcc
Q psy16387 427 SLLPHFLDMISS 438 (676)
Q Consensus 427 k~l~~f~~lls~ 438 (676)
+.++-...++..
T Consensus 62 ~~~~~L~~~l~~ 73 (88)
T PF13646_consen 62 EAIPALIKLLQD 73 (88)
T ss_dssp HTHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 455555555544
No 222
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.01 E-value=40 Score=36.55 Aligned_cols=56 Identities=21% Similarity=0.505 Sum_probs=39.0
Q ss_pred eeeecCCCCCCC--------cCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------------cccCCC
Q psy16387 80 IMDTCTRCHGEK--------CEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------------KNPCTT 139 (676)
Q Consensus 80 r~~~C~~C~GtG--------~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~ 139 (676)
....||.|.+.- ...|...-.|..|+-.=.. .+..|+.|+-++..- ...|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~--------~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~ 257 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV--------VRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGD 257 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc--------cCccCCCCCCCCceeeeeecCCCcceEeeeccc
Confidence 457899998863 2356778889999765432 357899998775321 267888
Q ss_pred CCCC
Q psy16387 140 CDGK 143 (676)
Q Consensus 140 C~G~ 143 (676)
|++-
T Consensus 258 C~~Y 261 (309)
T PRK03564 258 CGTY 261 (309)
T ss_pred cccc
Confidence 8864
No 223
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.85 E-value=1.1e+02 Score=28.65 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=51.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc---chhhcHHHHHHhhhcccc--------cCChHHHHHHHHHHHHHh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS---VIKSHFSSILDSVSPLML--------DISATTRKAAVKLLSAMF 373 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~---~~~~~~~~il~~~~~li~--------D~~~~VR~~l~~ll~~l~ 373 (676)
+.-|+.+|+|.++.|+..||.-|+-++...+.. -+..+ +.+|..+..--- |....||.++-.++..|+
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~-~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN-SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh-HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 566778899999999999999999999888754 22233 345555554433 236789999999999887
Q ss_pred c
Q psy16387 374 S 374 (676)
Q Consensus 374 ~ 374 (676)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 5
No 224
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=36.79 E-value=36 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=25.4
Q ss_pred HHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 388 VVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 388 l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
|+.++...+++=+++||.-|..-|.-+.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4566778899999999999999999888764
No 225
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=36.68 E-value=1e+02 Score=29.84 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=66.0
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc-----chhhcHHHHHHhhhcccc-----cCChHHHHHHHHHHH
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS-----VIKSHFSSILDSVSPLML-----DISATTRKAAVKLLS 370 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~-----~~~~~~~~il~~~~~li~-----D~~~~VR~~l~~ll~ 370 (676)
...+.+.+..+++..+... +.|..|+-.|.+.|.. +-...+..|+.-+..+.. +.+..+-.++++-|+
T Consensus 64 ~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 64 AKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp -CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 4445677888887665554 8899999999888853 122333444433333322 355678888999999
Q ss_pred HHhccCChhhhccc--HHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 371 AMFSQVTEEELAPL--FEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 371 ~l~~~~~~~~i~p~--~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
.|+..-. .+.-. -+-.+-+|..++..-++.+|.-++.+|..+
T Consensus 142 al~n~~~--G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 142 ALMNTKY--GLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHTSSHH--HHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHccHH--HHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9877222 11111 233456666677777788999999888765
No 226
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=36.57 E-value=22 Score=42.44 Aligned_cols=49 Identities=18% Similarity=0.499 Sum_probs=32.6
Q ss_pred eecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCC
Q psy16387 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGK 143 (676)
Q Consensus 82 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 143 (676)
..|+.|+..-. ....-|+.|+.+-. ...|+.|+-.=..-..-|+.|+..
T Consensus 2 ~~Cp~Cg~~n~---~~akFC~~CG~~l~----------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENP---NNNRFCQKCGTSLT----------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCC---CCCccccccCCCCC----------CCcCCCCCCCCCcccccccccCCc
Confidence 57999976532 23567999944321 246999977644445789999754
No 227
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=36.40 E-value=1.1e+02 Score=30.30 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=18.1
Q ss_pred cEEEeeecCCeEEEEecCCCCccc-CCCcEEEEcC
Q psy16387 211 GTIRIPGIYDDQTVLFLEQGSVKL-SSHQIMVKTG 244 (676)
Q Consensus 211 ~~i~v~tldG~~~v~Ip~~~~~gt-~~g~~lrl~G 244 (676)
+++.||-| .+.||| |+ +.|..=.|.|
T Consensus 72 a~i~IPEl----~lei~p----g~~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPEL----GIKIEP----GPASQGYISNIEG 98 (163)
T ss_pred cEEEccce----eEEecC----CCcCCceEEehHh
Confidence 56777754 588998 76 5676666754
No 228
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=35.95 E-value=55 Score=32.44 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=62.1
Q ss_pred cccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc-chhhhhhhhHH
Q psy16387 354 MLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHF 432 (676)
Q Consensus 354 i~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f 432 (676)
..|+--++|+++|.++..++..+... + -+..++-++..|+.- ..|||.=+..+|--|...+|.. ......+.+.|
T Consensus 36 ~vDDGLelRK~ayE~lytlLd~~~~~-~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l 111 (169)
T PF08623_consen 36 KVDDGLELRKAAYECLYTLLDTCLSR-I--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPL 111 (169)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHSTCSS-S---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHHh-C--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 46888899999999999998754422 2 245557888899999 9999999999999999999964 44566777777
Q ss_pred HHHhccccc
Q psy16387 433 LDMISSQTR 441 (676)
Q Consensus 433 ~~lls~~~~ 441 (676)
-..|+....
T Consensus 112 ~~~L~~k~k 120 (169)
T PF08623_consen 112 RKTLSKKLK 120 (169)
T ss_dssp HHHHH----
T ss_pred HHHhhccCC
Confidence 777774443
No 229
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=35.90 E-value=40 Score=25.08 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=5.0
Q ss_pred eeEeCCCCCC
Q psy16387 119 MRSTCRYCKG 128 (676)
Q Consensus 119 ~~~~C~~C~G 128 (676)
....|+.|+|
T Consensus 18 ~id~C~~C~G 27 (41)
T PF13453_consen 18 EIDVCPSCGG 27 (41)
T ss_pred EEEECCCCCe
Confidence 3444555554
No 230
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=35.85 E-value=77 Score=31.07 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred EeCCCCCCcceEe---------------cccCCCCCCCceeeeeeEEEEEeCCCC-cCCcEEEEccccCCccEEEEEEEe
Q psy16387 121 STCRYCKGSRNLI---------------KNPCTTCDGKGQFAQRQTITVPVPAGV-EDGQTVRMNVGKSKKEIYITFRVE 184 (676)
Q Consensus 121 ~~C~~C~G~G~~i---------------~~~C~~C~G~G~v~~~~~l~V~IP~Gv-~~G~~irl~gG~~~GDL~v~i~vk 184 (676)
..||.|+..|... .-.|++|+ -+.-+|..-... +-|.++.+.... +.||.-.|---
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG-------yk~~ev~~~~~~~~~G~r~tl~V~~-~~DL~r~VvkS 73 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG-------YKNNEVKSGGQIQPKGVRITLKVES-PEDLNRQVVKS 73 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT---------EEEEEEEECSS-SSEEEEEEEE-S-HHHHC-EEEE-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC-------CEeeeEEECccCCCCceEEEEEECC-HHHhcceEEec
Q ss_pred cCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEe-cCCCCcccCCCcEEEEcC
Q psy16387 185 KSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLF-LEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 185 ~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~I-p~~~~~gt~~g~~lrl~G 244 (676)
++ +++.||-|+ +.| |. +++.|..-.|.|
T Consensus 74 ~~------------------------ati~IPEl~----~ei~P~----~~~~g~iTTVEG 102 (161)
T PF03367_consen 74 DT------------------------ATIEIPELG----LEIEPG----PSQGGFITTVEG 102 (161)
T ss_dssp TT-------------------------EEEEGGGT----EEE--T----TTT-SEEEEHHH
T ss_pred Cc------------------------EEEEEeecc----eEEccC----CCCCceEEehHH
No 231
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=35.71 E-value=97 Score=35.01 Aligned_cols=83 Identities=19% Similarity=0.085 Sum_probs=50.3
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
-|+..++|-++.+|..++ .+.......| .+.+.+++.|.|..||.+.+..|..+.. .. ..+
T Consensus 121 ~L~~~L~~~~p~vR~aal-~al~~r~~~~-----------~~~L~~~L~d~d~~Vra~A~raLG~l~~----~~---a~~ 181 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGL-AALGAHRHDP-----------GPALEAALTHEDALVRAAALRALGELPR----RL---SES 181 (410)
T ss_pred HHHHHhcCCChHHHHHHH-HHHHhhccCh-----------HHHHHHHhcCCCHHHHHHHHHHHHhhcc----cc---chH
Confidence 345556666677776666 3333221111 2345556668888888888888877632 11 111
Q ss_pred HHHHHHhhhhcccchhhccccHHHHH
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIID 412 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld 412 (676)
. |..++.|-+++||.-|+.-|-
T Consensus 182 ~----L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 182 T----LRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred H----HHHHHcCCCHHHHHHHHHHHH
Confidence 1 345688888999988886663
No 232
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=35.14 E-value=2.8e+02 Score=30.45 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=73.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+++.-+.+..-|...|+.||..|+.--.-|| +-.++...+.+-...-.|.+-.+=..++++.++|+. =|.=.|.||
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~tD~gl~~---LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Y 255 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRTDPGLQQ---LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPY 255 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCCchh---hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHh
Confidence 4445555556778889999988776665555 234444444444444444355556667777777765 233346677
Q ss_pred HHHHHHHHhhhhc--ccc--------hhhccccHHHHHHHHHhCCccchh-hhhhhhHHHHH
Q psy16387 385 FEIVVRYLACAMS--HLD--------AGVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLDM 435 (676)
Q Consensus 385 ~~~l~~~i~~AMT--Hi~--------~~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~l 435 (676)
+..|+.=+.+-+. .+. -.+|..|-.+|..+.+.|...-.. -.+++..+...
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~ 317 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKA 317 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 7666554432221 111 267888888888888887743211 23444444433
No 233
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=34.87 E-value=2.1e+02 Score=28.90 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=19.3
Q ss_pred cEEEeeecCCeEEEEecCCCCcc-cCCCcEEEEcC
Q psy16387 211 GTIRIPGIYDDQTVLFLEQGSVK-LSSHQIMVKTG 244 (676)
Q Consensus 211 ~~i~v~tldG~~~v~Ip~~~~~g-t~~g~~lrl~G 244 (676)
+++.||-| .+.||| | ++.|..-.|.|
T Consensus 74 ati~IPEl----~lei~p----g~~~~G~iTTVEG 100 (192)
T TIGR00310 74 ATIRIPEL----GLDIEP----GPTSGGFITNLEG 100 (192)
T ss_pred cEEEccce----EEEECC----CccCCceEEeeHh
Confidence 56777754 688999 7 57888888854
No 234
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.54 E-value=38 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=11.1
Q ss_pred eccccCceeEEEEeeCCceeeEeCCCCCC
Q psy16387 100 KCHYCNGTGLETISTGPFVMRSTCRYCKG 128 (676)
Q Consensus 100 ~C~~C~G~G~~~~~~G~~~~~~~C~~C~G 128 (676)
.|..|+..-.+...+.- .....||.|++
T Consensus 7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 35555444433332221 22344555544
No 235
>KOG2160|consensus
Probab=34.38 E-value=1.3e+02 Score=33.07 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=68.3
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc---chhhc-HHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChh
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS---VIKSH-FSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEE 379 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~---~~~~~-~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~ 379 (676)
.+..++..+.|-++.+|.-|+.=|-..+.+||.+ +++.. ++.|+..+. .|.+-.||..++-.+..++-.-+ .
T Consensus 125 gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~-~ 200 (342)
T KOG2160|consen 125 GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNK-P 200 (342)
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCc-H
Confidence 3567778889999999999999999999999975 33332 233333322 68888887777766665543222 2
Q ss_pred hhcccHHH-HHHHHhhhhcc--cchhhccccHHHHHHHHHhCC
Q psy16387 380 ELAPLFEI-VVRYLACAMSH--LDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 380 ~i~p~~~~-l~~~i~~AMTH--i~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.+.-|+.+ =..=++-+|-- -....+.=++.+++.|++.-+
T Consensus 201 g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 201 GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 22233322 01112334444 445555666666776666655
No 236
>KOG0946|consensus
Probab=34.06 E-value=1.8e+02 Score=35.48 Aligned_cols=94 Identities=15% Similarity=0.246 Sum_probs=60.7
Q ss_pred HHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc--HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc--c
Q psy16387 347 LDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL--FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL--T 422 (676)
Q Consensus 347 l~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~--~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l--~ 422 (676)
++.++..+--.|=-||...++||..++..-|.+.-.-. +|.=++-+-.-++-...-||.|++.+|.-|..-+|.+ .
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKl 203 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKL 203 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHH
Confidence 34444555566888999999999999987776553221 1222223333345557789999999999999999864 2
Q ss_pred hhhhhhhhHHHHHhcccc
Q psy16387 423 ANYRSLLPHFLDMISSQT 440 (676)
Q Consensus 423 ~~~~k~l~~f~~lls~~~ 440 (676)
-++.-++.-.+++|.-..
T Consensus 204 VAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 204 VAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344455555555555433
No 237
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=33.69 E-value=96 Score=30.58 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=37.0
Q ss_pred ccccCceeEEEE-e--eCC-c----eeeEeCCCCCCcceEec-------------ccCCCCCCCceeeee------eEEE
Q psy16387 101 CHYCNGTGLETI-S--TGP-F----VMRSTCRYCKGSRNLIK-------------NPCTTCDGKGQFAQR------QTIT 153 (676)
Q Consensus 101 C~~C~G~G~~~~-~--~G~-~----~~~~~C~~C~G~G~~i~-------------~~C~~C~G~G~v~~~------~~l~ 153 (676)
||.|++.+.... . .=| | .+...|+.|+=+-.-++ ...+.=-.+-+++.+ -.+.
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~~~~~p~r~~l~V~~~~DL~r~VvkS~ta~i~IPEl~ 80 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRSTDVYQLEEKEPVRYIIKIENEDDLFTLVYRSRSATIRIPELG 80 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchhheeEcCCcCCEEEEEEECChhhccceEEEcCCcEEEcccee
Confidence 778877764331 1 123 2 36788999976643221 111111122233222 2467
Q ss_pred EEeCCCC-cCCcEEEEcc
Q psy16387 154 VPVPAGV-EDGQTVRMNV 170 (676)
Q Consensus 154 V~IP~Gv-~~G~~irl~g 170 (676)
++||||. ..|..=.++|
T Consensus 81 lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 81 IKIEPGPASQGYISNIEG 98 (163)
T ss_pred EEecCCCcCCceEEehHh
Confidence 7888887 5776666776
No 238
>KOG0166|consensus
Probab=32.96 E-value=80 Score=36.62 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=78.1
Q ss_pred HHHHHHHhc-cCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLR-HNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~-h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
|..|...+. ||..+.||||.=-+-.+..-++..+-...=..|++.++.++...|-..|+++.-.+..+...-.++++.-
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 456667776 8999999999999988887776433223445689999999999999999999998876665555555433
Q ss_pred cHHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 384 LFEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 384 ~~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.++. ++-.++.-+|-...+|-.-+|.-|.-+++...
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 2222 23333333455566665556666666666544
No 239
>KOG1059|consensus
Probab=32.79 E-value=2.1e+02 Score=34.54 Aligned_cols=124 Identities=13% Similarity=0.251 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE 380 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~ 380 (676)
|-| -.|.+..|.|--+-+||.|..-+=.++-+||. -+.+-.+++.+-+=|.|..|-.|++..+=++..+-|..-
T Consensus 143 RDL-a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 143 RDL-ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 444 36889999999999999999999999999994 345577777888899999999999999999988777654
Q ss_pred h--cc-cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhcccc
Q psy16387 381 L--AP-LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQT 440 (676)
Q Consensus 381 i--~p-~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls~~~ 440 (676)
+ +| ||.++ |-++..- -=.++|.++-.-.|...+--.|+++-..++|-+..
T Consensus 217 L~LAP~ffkll--------ttSsNNW--mLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~ 269 (877)
T KOG1059|consen 217 LQLAPLFYKLL--------VTSSNNW--VLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV 269 (877)
T ss_pred ccccHHHHHHH--------hccCCCe--ehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH
Confidence 3 44 33332 2211110 01233444333344333334566666666665544
No 240
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.08 E-value=2.2e+02 Score=30.56 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=37.4
Q ss_pred HHHHhhhhcccchhhccccHHHHHHHHHhCCccc-hhhhhhhhHHHHHhcccccc
Q psy16387 389 VRYLACAMSHLDAGVREDSLLIIDVLLEQCPILT-ANYRSLLPHFLDMISSQTRS 442 (676)
Q Consensus 389 ~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~-~~~~k~l~~f~~lls~~~~~ 442 (676)
..+++ .+.|-+.-|+.=|..+|..|+.+.|... ......++.|+++|+....+
T Consensus 108 ~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~ 161 (312)
T PF03224_consen 108 SPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSS 161 (312)
T ss_dssp HHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcC
Confidence 34444 5677799999999999999999999543 22468899999999985544
No 241
>KOG2160|consensus
Probab=31.86 E-value=1.8e+02 Score=32.03 Aligned_cols=142 Identities=16% Similarity=0.097 Sum_probs=84.7
Q ss_pred hhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcc
Q psy16387 319 VKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSH 398 (676)
Q Consensus 319 ~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTH 398 (676)
.|-+||..|.+++-..- ....-+-..-+.-++-.+.+.+..||..+..++..++..-|..+..-+=.-....|-.+.|+
T Consensus 99 ~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 57789999999995432 11111111112223337889999999999999999988777655432221133333334443
Q ss_pred c-chhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhcccccccccceeeEEecCCCcchhHHHHHHHHHHHHHHHH
Q psy16387 399 L-DAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSMLLA 476 (676)
Q Consensus 399 i-~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~~~R~kvL~~L~~fL~~ 476 (676)
- ...+|.-||--+..|+.+.|.-...+ ..+++|..|+--- .++.++++.+.|++.-++..|+.
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~f-l~~~G~~~L~~vl--------------~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEF-LKLNGYQVLRDVL--------------QSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHH-HhcCCHHHHHHHH--------------HcCCcchHHHHHHHHHHHHHHHh
Confidence 3 34577889999999999988432222 1233333333222 22234677888898877777664
No 242
>KOG1243|consensus
Probab=31.26 E-value=3.1e+02 Score=33.00 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=85.5
Q ss_pred hhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHH----------------------------------HH
Q psy16387 302 KLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSS----------------------------------IL 347 (676)
Q Consensus 302 ~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~----------------------------------il 347 (676)
-+.+-.+|.-+.-.+...|++--.+|.+.+..-|.+++...+.. ++
T Consensus 253 fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~ 332 (690)
T KOG1243|consen 253 FVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRII 332 (690)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchh
Confidence 34445566666667777777888888887777665433222222 34
Q ss_pred HhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhh
Q psy16387 348 DSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRS 427 (676)
Q Consensus 348 ~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k 427 (676)
+-+.+|+.-.|+.||--|+.-+......++.+.+. +.+..|+..+|+--++.||+-.++.+-+|..-...- .--..
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~---d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-~Ln~E 408 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN---DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-NLNGE 408 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc---chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-hhcHH
Confidence 44455555667777777776665554444443332 345666777899999999999999888876554411 00134
Q ss_pred hhhHHHHHhcccccccccceeeEEec
Q psy16387 428 LLPHFLDMISSQTRSHEQARQLTVDL 453 (676)
Q Consensus 428 ~l~~f~~lls~~~~~~~~~~~ltv~~ 453 (676)
+|+.|-.+=. .+....|+.|+-+
T Consensus 409 llr~~ar~q~---d~~~~irtnttic 431 (690)
T KOG1243|consen 409 LLRYLARLQP---DEHGGIRTNTTIC 431 (690)
T ss_pred HHHHHHhhCc---cccCcccccceee
Confidence 5555555444 2222345555544
No 243
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=31.11 E-value=71 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=18.3
Q ss_pred eccccCceeEEEEe--e----CCceeeEeCCCCC
Q psy16387 100 KCHYCNGTGLETIS--T----GPFVMRSTCRYCK 127 (676)
Q Consensus 100 ~C~~C~G~G~~~~~--~----G~~~~~~~C~~C~ 127 (676)
.|+.|++...+..+ . -||+.--.|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 58888777754322 2 4677777888775
No 244
>KOG1243|consensus
Probab=30.76 E-value=1.3e+02 Score=35.96 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
..++..++.+...+|--=|+++.+.+..-+. +.--..|++.++-.+.|.++.+|.+-++.+..+.+++.+..+
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 4456667888899999999999988854443 234567999999999999999999999999999998887743
No 245
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.75 E-value=46 Score=36.05 Aligned_cols=52 Identities=27% Similarity=0.672 Sum_probs=0.0
Q ss_pred ecCCCCCC---------CcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------------cccCCC
Q psy16387 83 TCTRCHGE---------KCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------------KNPCTT 139 (676)
Q Consensus 83 ~C~~C~Gt---------G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------------~~~C~~ 139 (676)
.||.|.+. +...|...-.|..|+-.=.. ....|+.|+-....- ...|..
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~--------~R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~ 257 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY--------VRVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDS 257 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc--------cCccCCCCCCCCceeeEeecCCCCCcceEEeeccc
Q ss_pred CCC
Q psy16387 140 CDG 142 (676)
Q Consensus 140 C~G 142 (676)
|++
T Consensus 258 C~~ 260 (305)
T TIGR01562 258 CQG 260 (305)
T ss_pred ccc
No 246
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.54 E-value=28 Score=31.92 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=14.0
Q ss_pred eeecCCCCCCCcCCCCcceecccc
Q psy16387 81 MDTCTRCHGEKCEPGTKAQKCHYC 104 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g~~~~~C~~C 104 (676)
+.+|+.|...-+--+..+..||.|
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~C 32 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKC 32 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCC
Confidence 346777765555555555556665
No 247
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.51 E-value=61 Score=42.26 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=72.2
Q ss_pred HHHHHHh--ccCCchhhhhHHHHHHH--------------hhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHH
Q psy16387 306 KELMSRL--RHNNSAVKQDGLSGLLE--------------IITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLL 369 (676)
Q Consensus 306 k~lLs~l--~h~n~~~RkdaL~gl~~--------------ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll 369 (676)
=|++-.+ .+-|...|+.+-.=|+. .+..|+ .++..|..+|+.=+--++--.+..||.-...++
T Consensus 381 ~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~-~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y 459 (1426)
T PF14631_consen 381 IDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHS-EVLKDYFPSILSLAQSLLRSKEPSVREFGSHLY 459 (1426)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHH-HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3555544 33344456655544444 444454 467778888888888888888999999999999
Q ss_pred HHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh
Q psy16387 370 SAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN 424 (676)
Q Consensus 370 ~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~ 424 (676)
..+|...+.-.-+--+..|+.||+++ ....| .-||.+|-.|.+.+|.....
T Consensus 460 ~~lF~~fds~~qqeVv~~Lvthi~sg---~~~ev-~~aL~vL~~L~~~~~~~l~~ 510 (1426)
T PF14631_consen 460 KYLFKEFDSYCQQEVVGALVTHIGSG---NSQEV-DAALDVLCELAEKNPSELQP 510 (1426)
T ss_dssp HHHHHSS-HHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHcCC---cHHHH-HHHHHHHHHHHhccHHHHHH
Confidence 98888665322334556677888665 24444 46788888888888864433
No 248
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.90 E-value=1.7e+02 Score=35.18 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=80.6
Q ss_pred HHHHHhccCCchhhh---hHHHHHHHhhhcCCc--cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 307 ELMSRLRHNNSAVKQ---DGLSGLLEIITLNPT--SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 307 ~lLs~l~h~n~~~Rk---daL~gl~~ll~~~P~--~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
++...+..-+-+-|. |++..+-+.+...|. +..+..+..++.-+.+.+.|..+-+|.-++..+..|+. ++....
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifd-l~sk~~ 381 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFD-LNSKTV 381 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh-Cccccc
Confidence 344445555555565 567777777777763 23345677788888999999999999999999999987 555444
Q ss_pred cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 382 APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 382 ~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..--+++-+-++|- ---+.-||+.|.+++.-||-..|-
T Consensus 382 ~~r~ev~~lv~r~l-qDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 382 GRRHEVIRLVGRRL-QDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred chHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhcCCh
Confidence 44445555545543 345677999999999999999993
No 249
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.86 E-value=2.4e+02 Score=26.33 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=57.4
Q ss_pred hHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh---hc--ccHHHHHHHHhhhh
Q psy16387 322 DGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE---LA--PLFEIVVRYLACAM 396 (676)
Q Consensus 322 daL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~---i~--p~~~~l~~~i~~AM 396 (676)
++...+-|+|.+.+ ......+..+...|...++.|.-.++.||..+...+...- ++ .|+.-++-.+...
T Consensus 19 ~~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~- 92 (133)
T cd03561 19 ALNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS- 92 (133)
T ss_pred HHHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-
Confidence 34445555554443 2334455555555666667788888888888887776422 22 2333333333333
Q ss_pred cccchhhccccHHHHHHHHHhCCc
Q psy16387 397 SHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 397 THi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
+-..+.||.-.+.++.-+-+.++.
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 93 PKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 356788999999999988888874
No 250
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.33 E-value=50 Score=30.37 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=10.6
Q ss_pred hcCceeeeee-eeeeecCCCCCC
Q psy16387 69 ARGVNKDVVL-KIMDTCTRCHGE 90 (676)
Q Consensus 69 ~~G~~k~i~~-~r~~~C~~C~Gt 90 (676)
+.|++..+.. +-...|..|...
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg~~ 79 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCSQV 79 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCCCE
Confidence 3444444443 334556666533
No 251
>KOG2149|consensus
Probab=28.84 E-value=2.9e+02 Score=31.04 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=64.1
Q ss_pred hhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 302 KLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 302 ~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
...++.+.....+-+..+|....+-+..++...-.+.+..+.+-++.-+.--++-....||...+++|..++..+|+.-+
T Consensus 98 ~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 98 YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 33344455556677888999988888886633322345667777777777778888999999999999999998886655
Q ss_pred cccHHHHHHHH
Q psy16387 382 APLFEIVVRYL 392 (676)
Q Consensus 382 ~p~~~~l~~~i 392 (676)
.-...++--|+
T Consensus 178 ~~~~~il~n~~ 188 (393)
T KOG2149|consen 178 RYASKILENFK 188 (393)
T ss_pred HHHHHHHHHHH
Confidence 54444443333
No 252
>KOG0213|consensus
Probab=28.45 E-value=2.8e+02 Score=33.85 Aligned_cols=136 Identities=10% Similarity=0.208 Sum_probs=98.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhh---hcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEII---TLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll---~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
+-..|-+|++.++++|+.|+.-+-.+. +.--++-+-.|++.||-+ -+--..+.|--..++.+..|...+.-..+
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyE---ylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYE---YLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHH---hcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 345677899999999999986555444 222222234566666543 44556788888899999998887876677
Q ss_pred cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccc--hhhhhhhhHHHHHhccccccc
Q psy16387 382 APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILT--ANYRSLLPHFLDMISSQTRSH 443 (676)
Q Consensus 382 ~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~--~~~~k~l~~f~~lls~~~~~~ 443 (676)
.|=+.-|+.-|.--+-.-...|++....++..+-+..|.-+ .-|.+|-=..++||-....+.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~i 941 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEI 941 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666655555556678899999999999999999854 459998888888887655443
No 253
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=27.52 E-value=83 Score=23.36 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=16.5
Q ss_pred eccccCceeEEEE--ee----CCceeeEeCCCCC
Q psy16387 100 KCHYCNGTGLETI--ST----GPFVMRSTCRYCK 127 (676)
Q Consensus 100 ~C~~C~G~G~~~~--~~----G~~~~~~~C~~C~ 127 (676)
.||.|+....+.. |. .||+.--.|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 5888888885533 22 3577777788875
No 254
>KOG1062|consensus
Probab=27.29 E-value=1e+02 Score=37.46 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=59.8
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
+.-.+++|+++.+||.|+.-+-..+-.-| ..+.-++.+...+++|.+..|=-+.+.++..++. ..++.+.-|=.
T Consensus 146 eVe~Ll~~~~~~irKKA~Lca~r~irK~P-----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~-~~~~~l~~fr~ 219 (866)
T KOG1062|consen 146 EVERLLQHRDPYIRKKAALCAVRFIRKVP-----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCK-ISPDALSYFRD 219 (866)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHcCc-----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHh-cCHHHHHHHHH
Confidence 44466799999999999999999997777 3455688999999999999999999999988766 55566655544
Q ss_pred H
Q psy16387 387 I 387 (676)
Q Consensus 387 ~ 387 (676)
+
T Consensus 220 l 220 (866)
T KOG1062|consen 220 L 220 (866)
T ss_pred H
Confidence 3
No 255
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=27.19 E-value=2.2e+02 Score=30.81 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 358 SATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 358 ~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
+..|..+++.-|..|+..+|...+..+..-.+.++..=+-+-+.+||.-|-..|-+|-|....
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 367999999999999999998777776666777777777788999999999999999888663
No 256
>KOG1059|consensus
Probab=26.96 E-value=1e+02 Score=37.04 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=63.7
Q ss_pred hHHHHHHHhc----cCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChh
Q psy16387 304 SVKELMSRLR----HNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEE 379 (676)
Q Consensus 304 ~lk~lLs~l~----h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~ 379 (676)
+++=.+++++ +-..+-|-=+|.-+..++..||. .++.|..-||. ++.|.|.++|-.++.||-.+ ++.+
T Consensus 296 siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlr----cL~DkD~SIRlrALdLl~gm---Vskk 367 (877)
T KOG1059|consen 296 SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILR----CLDDKDESIRLRALDLLYGM---VSKK 367 (877)
T ss_pred HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHH----HhccCCchhHHHHHHHHHHH---hhhh
Confidence 3444455554 34455677799999999999995 56777776654 57899999999999999887 6778
Q ss_pred hhcccHHHHHHHHhhh
Q psy16387 380 ELAPLFEIVVRYLACA 395 (676)
Q Consensus 380 ~i~p~~~~l~~~i~~A 395 (676)
.+.-.+..||-|+-.|
T Consensus 368 Nl~eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 368 NLMEIVKTLMKHVEKA 383 (877)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8888888888877554
No 257
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.80 E-value=2.6e+02 Score=29.75 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=62.3
Q ss_pred cHHHHHHhhh-cccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC-
Q psy16387 342 HFSSILDSVS-PLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP- 419 (676)
Q Consensus 342 ~~~~il~~~~-~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p- 419 (676)
.+..+++.++ |.+.-.+..||...++.|... ..++.+.-..+++++.--+ ..-...||.-|++.+=-++-.|+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~-~Lld~~~a~~~l~l~~~~~----~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLC-CLLDKELAKEHLPLFLQAL----QKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCc
Confidence 4458888877 999999999999999999743 3356665566666654433 33488999999997644444544
Q ss_pred ccchh--h-------hhhhhHHHHHhccc
Q psy16387 420 ILTAN--Y-------RSLLPHFLDMISSQ 439 (676)
Q Consensus 420 ~l~~~--~-------~k~l~~f~~lls~~ 439 (676)
..... . ..+++-|...|...
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 126 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSE 126 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcC
Confidence 33322 1 34666666666655
No 258
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.62 E-value=1.4e+02 Score=33.81 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-++..+..-++.+|.++...|-++= .| .....+.+++.|.+..||.+.+.++..... + |
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~---------~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~-----~- 148 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG--GR---------QAEPWLEPLLAASEPPGRAIGLAALGAHRH--D-----P- 148 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC--ch---------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--C-----h-
Confidence 345666677777778877777775433 11 255667777888899999888877764221 1 1
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHH
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLE 416 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~ 416 (676)
..++..++.|-++.||..|+..|-.|-.
T Consensus 149 ----~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 149 ----GPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred ----HHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 1245556779999999999999987643
No 259
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=25.31 E-value=32 Score=35.85 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=5.3
Q ss_pred eCCCCCCcceE
Q psy16387 122 TCRYCKGSRNL 132 (676)
Q Consensus 122 ~C~~C~G~G~~ 132 (676)
+||+|+|+|++
T Consensus 40 tCPTCqGtGrI 50 (238)
T PF07092_consen 40 TCPTCQGTGRI 50 (238)
T ss_pred cCCCCcCCccC
Confidence 45555544443
No 260
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=25.06 E-value=46 Score=26.25 Aligned_cols=10 Identities=30% Similarity=1.195 Sum_probs=5.9
Q ss_pred eccccCceeE
Q psy16387 100 KCHYCNGTGL 109 (676)
Q Consensus 100 ~C~~C~G~G~ 109 (676)
.||-|+|+..
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 3666666554
No 261
>KOG1240|consensus
Probab=25.01 E-value=1.6e+02 Score=37.40 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHhccCC-chhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc---cCChhhhcc
Q psy16387 308 LMSRLRHNN-SAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS---QVTEEELAP 383 (676)
Q Consensus 308 lLs~l~h~n-~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~---~~~~~~i~p 383 (676)
+.+.++|-+ ..+|.+||.-|+++= .+- --+.-+..|++=++.|+.|.++.||.+++..|-.+++ .+|+...--
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS-~~i--~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELS-TYI--DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHh-hhc--chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 345566644 447888887777654 332 2356788899999999999999999999999987775 344455545
Q ss_pred cHHHHHHHHhhhhcccchh
Q psy16387 384 LFEIVVRYLACAMSHLDAG 402 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~ 402 (676)
|-++|..+ ++|+..|
T Consensus 504 F~eYlfP~----L~~l~~d 518 (1431)
T KOG1240|consen 504 FPEYLFPH----LNHLLND 518 (1431)
T ss_pred hHhhhhhh----hHhhhcc
Confidence 55555544 4555544
No 262
>PF14353 CpXC: CpXC protein
Probab=24.52 E-value=38 Score=31.46 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=7.0
Q ss_pred eecCCCCCCCc
Q psy16387 82 DTCTRCHGEKC 92 (676)
Q Consensus 82 ~~C~~C~GtG~ 92 (676)
+.|+.|+..+.
T Consensus 2 itCP~C~~~~~ 12 (128)
T PF14353_consen 2 ITCPHCGHEFE 12 (128)
T ss_pred cCCCCCCCeeE
Confidence 46777766653
No 263
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.28 E-value=40 Score=40.74 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=6.2
Q ss_pred CcEEEEcCCccc
Q psy16387 237 HQIMVKTGHKKF 248 (676)
Q Consensus 237 g~~lrl~G~G~p 248 (676)
|+++.-+|.=+|
T Consensus 540 GTQmiaKG~~fp 551 (730)
T COG1198 540 GTQMIAKGHDFP 551 (730)
T ss_pred cchhhhcCCCcc
Confidence 445555555444
No 264
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.93 E-value=3.4e+02 Score=28.73 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=69.9
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+|...++......-+.+.|-|..+-..|..+ ..+.+-..++.=++.++...-..+|...+++|+.+++.++.. +|
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~---f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--~~ 224 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREA---FFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--SP 224 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--CC
Confidence 3555666653333367777666666655432 123455667777888888899999999999999999977655 34
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
+-+-++.=| .-++..+-=..||++||..+.....
T Consensus 225 ~~~dlispl---lrlL~t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 225 HGADLISPL---LRLLQTDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred cchHHHHHH---HHHhCCccHHHHHHHHHHHHhhccc
Confidence 322211111 1234555566788888888877653
No 265
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.91 E-value=4.6e+02 Score=29.90 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=47.6
Q ss_pred CCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccC-ChHHHHHHHHHHHHHhccCC
Q psy16387 315 NNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDI-SATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 315 ~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~-~~~VR~~l~~ll~~l~~~~~ 377 (676)
++-+.|-+|+..|.+.+..+|. ...-.|=..+.-|+... ..++|++.++||.++.....
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~~~----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~ 61 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKYPL----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD 61 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc
Confidence 4567899999999999999984 45556777777777755 56799999999998877544
No 266
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.84 E-value=5.7e+02 Score=27.32 Aligned_cols=131 Identities=14% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc--chhhcH----HHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS--VIKSHF----SSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE 378 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~--~~~~~~----~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~ 378 (676)
+-.+|+.+ .+++.+.+-.|.-+-|++..+|.. ++.... .........+..-.|..+...+..+|..++..-+.
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 34566666 678889999999999999999942 111100 11334444455556999999999999988876665
Q ss_pred hhhc---ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh-h-hhhhhHHHHHhc
Q psy16387 379 EELA---PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN-Y-RSLLPHFLDMIS 437 (676)
Q Consensus 379 ~~i~---p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~-~-~k~l~~f~~lls 437 (676)
..-. -.++.++-++++-.+.-...++.-++..|..|| ..+..+.. | ...++.+.++|.
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHH
Confidence 4444 566777777777555555667777788888887 44433322 3 456666777774
No 267
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.78 E-value=68 Score=29.58 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=10.5
Q ss_pred hcCceeeeee-eeeeecCCCCC
Q psy16387 69 ARGVNKDVVL-KIMDTCTRCHG 89 (676)
Q Consensus 69 ~~G~~k~i~~-~r~~~C~~C~G 89 (676)
+.|++..+.. +-...|..|+-
T Consensus 57 ~egA~L~i~~~p~~~~C~~Cg~ 78 (114)
T PRK03681 57 AEGCKLHLEEQEAECWCETCQQ 78 (114)
T ss_pred cCCCEEEEEeeCcEEEcccCCC
Confidence 3455555543 33456666653
No 268
>KOG1020|consensus
Probab=23.67 E-value=3.1e+02 Score=35.96 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=51.9
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
.-.++.+-++.||-.||.=+=..+-++|. +... .-..++..|+|..-+||+-+++.|+.+....|
T Consensus 860 Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~q----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 860 VHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQ----YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHhhccchhHHHHHHHHHHhhhhhccHH-HHHH----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 34777888899999998877777778873 4444 45566778999999999999999999987665
No 269
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=23.41 E-value=51 Score=30.54 Aligned_cols=19 Identities=26% Similarity=0.829 Sum_probs=12.7
Q ss_pred CCCCCCcceEecccCCCCC
Q psy16387 123 CRYCKGSRNLIKNPCTTCD 141 (676)
Q Consensus 123 C~~C~G~G~~i~~~C~~C~ 141 (676)
||.|++.=.+.+..|+.|+
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 6666666666667777775
No 270
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=23.18 E-value=2.6e+02 Score=31.90 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=28.5
Q ss_pred cHHHHHHHHHhCC--ccchhhhhhhhHHHHHhccccccc
Q psy16387 407 SLLIIDVLLEQCP--ILTANYRSLLPHFLDMISSQTRSH 443 (676)
Q Consensus 407 sl~~Ld~ll~~~p--~l~~~~~k~l~~f~~lls~~~~~~ 443 (676)
.+.+|..|+|..| .+...+..+++.++.---|.+...
T Consensus 137 vfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gn 175 (435)
T PF03378_consen 137 VFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGN 175 (435)
T ss_dssp HHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTT
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCC
Confidence 3788889999999 456678889999998888877654
No 271
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.18 E-value=48 Score=31.31 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=16.6
Q ss_pred eeecCCCCCCCcCCCCcceeccccCc
Q psy16387 81 MDTCTRCHGEKCEPGTKAQKCHYCNG 106 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g~~~~~C~~C~G 106 (676)
+.+|+.|...-+.-+..+..||.|+-
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCC
Confidence 45677776666555666677776643
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.17 E-value=1.3e+02 Score=29.90 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=52.6
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
+..-+++-|.-+|+-|+..+-..+.. .....++..+.+++.|.+.-||.+.--+|+.++.. .++.+.+|+.
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~ 195 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQ 195 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 34556788888999998877555533 56678999999999999999999999999998773 4444444443
No 273
>KOG2973|consensus
Probab=23.06 E-value=1.4e+02 Score=32.69 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=46.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHH
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKA 364 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~ 364 (676)
+.++...++.-|+.||+.|...+--+... |-.++..+-...|+.+..|+.|.+. .+.|
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a 62 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPA 62 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHH
Confidence 45677888999999999999999888877 5455555666788889999999888 4443
No 274
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=23.04 E-value=1e+02 Score=22.25 Aligned_cols=12 Identities=42% Similarity=1.121 Sum_probs=7.0
Q ss_pred eeccccCceeEE
Q psy16387 99 QKCHYCNGTGLE 110 (676)
Q Consensus 99 ~~C~~C~G~G~~ 110 (676)
..|+.|+|.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 456666666644
No 275
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=23.04 E-value=3.6e+02 Score=25.04 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=55.5
Q ss_pred hhcHHHHHHhhhcccccCChHHHHHHHHHHHHH-hccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 340 KSHFSSILDSVSPLMLDISATTRKAAVKLLSAM-FSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 340 ~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l-~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
...+...+..+-...-+.+..++.-+-+|.+.= +..-+++.|+.+..-+-.++. +|..+..++. +..++.++++-.
T Consensus 53 ~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~-~L~~lg~~~~--~~~l~~~i~~KL 129 (145)
T PF03564_consen 53 EENYEEAWELLEERYGNPRRIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIR-ALKALGVNVD--DPLLISIILSKL 129 (145)
T ss_pred chhhHHHHHHHHHHhCCchHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH-HHHHcCCCCC--CHHHHHHHHHHC
Confidence 345666677666666666665555444444422 234456778888888888875 7777766665 667999999999
Q ss_pred Cc-cchhhh
Q psy16387 419 PI-LTANYR 426 (676)
Q Consensus 419 p~-l~~~~~ 426 (676)
|. +...|.
T Consensus 130 p~~~~~~w~ 138 (145)
T PF03564_consen 130 PPEIREKWE 138 (145)
T ss_pred CHHHHHHHH
Confidence 95 445554
No 276
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=23.01 E-value=92 Score=38.96 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=68.6
Q ss_pred HHHHHHHhccC----------CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc
Q psy16387 305 VKELMSRLRHN----------NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS 374 (676)
Q Consensus 305 lk~lLs~l~h~----------n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~ 374 (676)
|.||+-++..- -++-|+.-|.-+.=++-+.|...-..|..++++.++.+++..+..+|+.++-|++.++-
T Consensus 1380 lnDLi~~~dsgliTff~s~ds~~~~k~~nl~rIsyl~~ssP~d~fl~~~~~LI~~I~~l~~sp~~klkk~~fll~r~L~L 1459 (1618)
T COG5221 1380 LNDLIVRLDSGLITFFVSQDSDANNKTLNLKRISYLIFSSPYDYFLGFSLKLIEKIATLMNSPSSKLKKEVFLLSRMLIL 1459 (1618)
T ss_pred HHHHHHHhcCCceEEEecchhhhhhhhhhhhheeEEEEeCchHhhhhccHHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 56666665332 23345666666666777788777778999999999999999999999999999999888
Q ss_pred cCChhhhcccHHHHHH
Q psy16387 375 QVTEEELAPLFEIVVR 390 (676)
Q Consensus 375 ~~~~~~i~p~~~~l~~ 390 (676)
..+.+-+-|+-|+++-
T Consensus 1460 r~S~~hl~~lwpi~~y 1475 (1618)
T COG5221 1460 RISHDHLGNLWPILLY 1475 (1618)
T ss_pred HhhHhhcccchHHHHH
Confidence 8999999999988654
No 277
>KOG0168|consensus
Probab=22.95 E-value=1.4e+02 Score=36.61 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=70.6
Q ss_pred hhcCCccchhhcHHHHHHhhhcccc-cCChHHHHHHHHHHHHHhccCChhhhcccHH--HHHHHHhhhhcccchhhcccc
Q psy16387 331 ITLNPTSVIKSHFSSILDSVSPLML-DISATTRKAAVKLLSAMFSQVTEEELAPLFE--IVVRYLACAMSHLDAGVREDS 407 (676)
Q Consensus 331 l~~~P~~~~~~~~~~il~~~~~li~-D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~--~l~~~i~~AMTHi~~~Ir~ds 407 (676)
|...| +++.+-...|++-+.+.-. -.+..||.-.+..|..+.--..++.|...+. .+..||...+.-=+..|=.-|
T Consensus 542 l~nqp-el~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgA 620 (1051)
T KOG0168|consen 542 LKNQP-ELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGA 620 (1051)
T ss_pred hhcCH-HHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeeh
Confidence 34444 3444433344444444444 3478899999988877766677777776663 367777777777778888899
Q ss_pred HHHHHHHHHhCCccchh-hhh--hhhHHHHHhc
Q psy16387 408 LLIIDVLLEQCPILTAN-YRS--LLPHFLDMIS 437 (676)
Q Consensus 408 l~~Ld~ll~~~p~l~~~-~~k--~l~~f~~lls 437 (676)
|.+.++|++.+|+++.. +.+ ++-.+-.|..
T Consensus 621 LQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 621 LQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 99999999999987543 332 5555545444
No 278
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.84 E-value=69 Score=29.97 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=24.6
Q ss_pred hhhHHHH-HHHhccCCchhhhhHHHHHHHhhhcC
Q psy16387 302 KLSVKEL-MSRLRHNNSAVKQDGLSGLLEIITLN 334 (676)
Q Consensus 302 ~l~lk~l-Ls~l~h~n~~~RkdaL~gl~~ll~~~ 334 (676)
++..|+. +.++.|-|+.||++||.-++.++..+
T Consensus 84 ~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 84 KLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred hcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4445554 45668999999999999999998654
No 279
>KOG1949|consensus
Probab=22.82 E-value=1.3e+02 Score=36.25 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=76.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhh-cHHHHHHhhhc-ccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKS-HFSSILDSVSP-LMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~-~~~~il~~~~~-li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+..+.+.|.+--+.+|-.|..|+-.+++.+- +++++ -+..+|.+|.- +.-|...+||-+.++=|..++. .| .--
T Consensus 222 f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW-e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np--~sh 297 (1005)
T KOG1949|consen 222 FEELYSLLEDPYPMVRSTAILGVCKITSKFW-EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NP--LSH 297 (1005)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cc--cch
Confidence 4567888999999999999999999998775 33343 33444444443 3337788999999999987764 22 223
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHh
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~ 417 (676)
|.+++++.-++-+|---+..||.-+..+|-.+-.+
T Consensus 298 ~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 298 PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 56677777777778778888887666665555443
No 280
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.81 E-value=1e+02 Score=26.26 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=25.7
Q ss_pred ecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec------ccCCCCCC
Q psy16387 83 TCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK------NPCTTCDG 142 (676)
Q Consensus 83 ~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------~~C~~C~G 142 (676)
.||.|+..-...+ ..-.|..|+.. +.....||.|+-.=.+.+ --|.+|+|
T Consensus 3 ~CP~C~~~L~~~~-~~~~C~~C~~~---------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQELEWQG-GHYHCEACQKD---------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SBEEEET-TEEEETTT--E---------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCccEEeC-CEEECcccccc---------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 5888876643332 46678888663 335677888887765543 46777765
No 281
>KOG2011|consensus
Probab=22.49 E-value=1.1e+02 Score=38.34 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=45.1
Q ss_pred cchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhcccccccccceeeEEecCCCcchhHHHHHHHHHHHHHHHH
Q psy16387 399 LDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSMLLA 476 (676)
Q Consensus 399 i~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~~~R~kvL~~L~~fL~~ 476 (676)
+.++||.+.+..|.++++.||... +=.+|+-.|||.-++. . -+| |.++|..|.++.+.
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~F-----l~dsYLKYiGWtLsDk--~--~~V-----------Rl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIF-----LSDSYLKYIGWTLSDK--N--GTV-----------RLRCLKALIKLYEK 356 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHH-----hcchHHHHhcceeecC--c--cHH-----------HHHHHHHHHHHHhc
Confidence 789999999999999999999432 2356888999998776 1 133 88888888777543
No 282
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=22.39 E-value=36 Score=34.56 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=32.6
Q ss_pred eeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCce--eeEeCCCCCCcceE---ecccCCCCC
Q psy16387 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFV--MRSTCRYCKGSRNL---IKNPCTTCD 141 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~--~~~~C~~C~G~G~~---i~~~C~~C~ 141 (676)
...|+.|.+.|. .|.-|+..... =||. ....|+.|+.-=.. .+..|+.|.
T Consensus 142 V~~C~lC~~kGf-------iCe~C~~~~~I----fPF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 142 VYSCELCQQKGF-------ICEICNSDDII----FPFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHhHHHHhCCC-------CCccCCCCCCC----CCCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 347889988773 58888877543 2543 46778888654221 246888885
No 283
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.37 E-value=59 Score=29.87 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=10.0
Q ss_pred hcCceeeeee-eeeeecCCCCCCC
Q psy16387 69 ARGVNKDVVL-KIMDTCTRCHGEK 91 (676)
Q Consensus 69 ~~G~~k~i~~-~r~~~C~~C~GtG 91 (676)
+.|+...+.. +-...|..|....
T Consensus 57 ~e~a~L~Ie~~p~~~~C~~Cg~~~ 80 (113)
T PF01155_consen 57 LEGAELEIEEVPARARCRDCGHEF 80 (113)
T ss_dssp TTT-EEEEEEE--EEEETTTS-EE
T ss_pred ccCCEEEEEecCCcEECCCCCCEE
Confidence 3444444443 3445676665544
No 284
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.35 E-value=63 Score=23.65 Aligned_cols=7 Identities=29% Similarity=1.023 Sum_probs=3.3
Q ss_pred eEeCCCC
Q psy16387 120 RSTCRYC 126 (676)
Q Consensus 120 ~~~C~~C 126 (676)
...|+.|
T Consensus 25 ~vrC~~C 31 (37)
T PF13719_consen 25 KVRCPKC 31 (37)
T ss_pred EEECCCC
Confidence 3445444
No 285
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=21.72 E-value=4.1e+02 Score=31.52 Aligned_cols=123 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccc--cCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHh
Q psy16387 316 NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLML--DISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLA 393 (676)
Q Consensus 316 n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~--D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~ 393 (676)
|..-|++-|..=---..+|-++.+-..+-.|+.+++..-- |.|.+.|.+++..|..+.. ..++.+.+...-+..|+
T Consensus 469 ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~-~~~d~V~~~~a~~~~~~- 546 (858)
T COG5215 469 NCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL-ICPDAVSDILAGFYDYT- 546 (858)
T ss_pred hhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHH-
Q ss_pred hhhcccchhhcccc------------------HHHHHHHHHhCCccchh-hhhhhhHHHHHhcccccc
Q psy16387 394 CAMSHLDAGVREDS------------------LLIIDVLLEQCPILTAN-YRSLLPHFLDMISSQTRS 442 (676)
Q Consensus 394 ~AMTHi~~~Ir~ds------------------l~~Ld~ll~~~p~l~~~-~~k~l~~f~~lls~~~~~ 442 (676)
|+.|...|+.++ +.+|..++...|.-+.. ..++++-|+.+|-..+..
T Consensus 547 --~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t 612 (858)
T COG5215 547 --SKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPT 612 (858)
T ss_pred --HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCc
No 286
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=21.58 E-value=2.3e+02 Score=33.90 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=59.2
Q ss_pred cCChHHHHHHHHHHHHHhccCChhh---hcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccc---------h
Q psy16387 356 DISATTRKAAVKLLSAMFSQVTEEE---LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILT---------A 423 (676)
Q Consensus 356 D~~~~VR~~l~~ll~~l~~~~~~~~---i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~---------~ 423 (676)
|+-...|.+.+.||+.+.-..=++- =+|-|.++.--|.=+.-|++-||+.-+|.+|-.|...+...- .
T Consensus 845 ~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~ 924 (1053)
T COG5101 845 DEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQ 924 (1053)
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHH
Confidence 6678999999999986543211111 145666666667778999999999999999999999876321 2
Q ss_pred hhhhhhhHHHHHhcccc
Q psy16387 424 NYRSLLPHFLDMISSQT 440 (676)
Q Consensus 424 ~~~k~l~~f~~lls~~~ 440 (676)
++..+|.+.+.+|--+.
T Consensus 925 yy~s~l~~il~vltDsD 941 (1053)
T COG5101 925 YYMSTLENILGVLTDSD 941 (1053)
T ss_pred HHHHHHHHHHeeeeccc
Confidence 34456666666654333
No 287
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=21.53 E-value=6.5e+02 Score=25.69 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=12.3
Q ss_pred EEEEeCCC--CcCCcEEEEcc
Q psy16387 152 ITVPVPAG--VEDGQTVRMNV 170 (676)
Q Consensus 152 l~V~IP~G--v~~G~~irl~g 170 (676)
-.+++|+| +.-|+.|.+.+
T Consensus 65 ~~vel~~gE~l~vGDei~vd~ 85 (201)
T COG1326 65 KEVELDPGETLKVGDEIEVDG 85 (201)
T ss_pred eeEecCCCCeEecCCEEEEcC
Confidence 34677777 56677777664
No 288
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=21.26 E-value=2.5e+02 Score=29.90 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=67.9
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
.+++.++..+.+.+..+|..|...+.++= ....++.+..++.|.+..||.+....|..+. +++.+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---~~~a~~ 108 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG---DPEAVP 108 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---ChhHHH
Confidence 45677888888888899999987744432 2347888889999999999999999665542 344444
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHh
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~ 417 (676)
++...+ .+ |-...||..+...|..+-+.
T Consensus 109 ~li~~l----~~---d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 109 PLVELL----EN---DENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HHHHHH----Hc---CCcHhHHHHHHHHHHhcCch
Confidence 444433 32 88999999998888766544
No 289
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.19 E-value=1.4e+02 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=16.2
Q ss_pred eeEEEEEeCCCCcCCcEEEEc
Q psy16387 149 RQTITVPVPAGVEDGQTVRMN 169 (676)
Q Consensus 149 ~~~l~V~IP~Gv~~G~~irl~ 169 (676)
...+++.-+.+++.||.+.+.
T Consensus 48 ~~~~~v~~~~~~~vGD~V~v~ 68 (154)
T PRK10862 48 THQLVVPSSQPLVPGQKVELG 68 (154)
T ss_pred ceEEEecCCCCCCCCCEEEEe
Confidence 355777778888999988776
No 290
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.08 E-value=62 Score=38.86 Aligned_cols=33 Identities=27% Similarity=0.682 Sum_probs=20.9
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe----cccCCCCCC
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI----KNPCTTCDG 142 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----~~~C~~C~G 142 (676)
....|..|+ ....|+.|.+.=..- ...|..|+-
T Consensus 382 p~l~C~~Cg-------------~~~~C~~C~~~L~~h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 382 PSLACARCR-------------TPARCRHCTGPLGLPSAGGTPRCRWCGR 418 (665)
T ss_pred CeeEhhhCc-------------CeeECCCCCCceeEecCCCeeECCCCcC
Confidence 455788883 245788888764443 256777763
No 291
>KOG0946|consensus
Probab=20.87 E-value=2.8e+02 Score=33.92 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhh--cHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh-h
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKS--HFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE-L 381 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~--~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~-i 381 (676)
+.-+|.-+-||+-.||.-|++=|..+++..|.++-.. -...=+++++-++.|.--.||.+.+-||.++....+.-+ |
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKl 203 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKL 203 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHH
Confidence 4456788899999999999999999999999752111 111236777888999999999999999999876444221 2
Q ss_pred cccHHHH---HHHHhhhhcccch-hhccccHHHHHHHHHhCC
Q psy16387 382 APLFEIV---VRYLACAMSHLDA-GVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 382 ~p~~~~l---~~~i~~AMTHi~~-~Ir~dsl~~Ld~ll~~~p 419 (676)
.-|-+.+ ..-|.- =-.+.- =|=+|.|.+|.-||.+--
T Consensus 204 VAFENaFerLfsIIee-EGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 204 VAFENAFERLFSIIEE-EGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHhhCc
Confidence 2222221 111110 000111 256799999999999855
No 292
>KOG1114|consensus
Probab=20.21 E-value=6.2e+02 Score=31.87 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=74.3
Q ss_pred HHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHH---HHHHHHHHhccCChhhhcccHHHHHHHHhhhhccc
Q psy16387 323 GLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKA---AVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHL 399 (676)
Q Consensus 323 aL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~---l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi 399 (676)
|=.-+..+.++||. .+ ..+-..+.++.+-. |..+..-+- .+++-+.+...++.+.+ ..|+.+
T Consensus 1094 ~~k~~~~l~s~ypd-~l-pll~~~l~kl~~~s-D~~kE~~~ki~eIl~~A~~Vi~~~D~eaL-------~~y~~~----- 1158 (1304)
T KOG1114|consen 1094 AEKIYNYLKSSYPD-YL-PLLEVRLAKLMQKS-DAVKETNKKIEEILSAADSVIQEIDTEAL-------ARYYAL----- 1158 (1304)
T ss_pred HHHHHHHHHHhCcc-cc-hHHHHHHHHhhhhc-ccchHHHHHHHHHHHHHHHHHHhhcHHHH-------HHHHhc-----
Confidence 55566677788883 22 23444555555544 765554433 34444455554554444 345543
Q ss_pred chhhccccHHHH-----------HHHHHhCCc------cc-----------hhhhhhhhHHHHHhcccccccccceeeEE
Q psy16387 400 DAGVREDSLLII-----------DVLLEQCPI------LT-----------ANYRSLLPHFLDMISSQTRSHEQARQLTV 451 (676)
Q Consensus 400 ~~~Ir~dsl~~L-----------d~ll~~~p~------l~-----------~~~~k~l~~f~~lls~~~~~~~~~~~ltv 451 (676)
..|=|-|+.++- +.|....=. |. +.-.++.++|.+++.|...++.+-|++
T Consensus 1159 k~D~r~da~klk~~me~qk~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~-- 1236 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQKDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQI-- 1236 (1304)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheeh--
Confidence 677777776653 333322111 10 013458899999999999888555543
Q ss_pred ecCCCcchhHHHHHHHHHHHHHHHHHHh
Q psy16387 452 DLDSRTTTTVFRIKVLTRLRSMLLAIVH 479 (676)
Q Consensus 452 ~~~~~~~~~~~R~kvL~~L~~fL~~~~~ 479 (676)
.+|+.+.|.++-+-|.++.+
T Consensus 1237 --------a~~ha~~~~~yGr~lK~l~k 1256 (1304)
T KOG1114|consen 1237 --------AKKHAKALGQYGRALKALLK 1256 (1304)
T ss_pred --------hHHHHHHHHHHHHHHHHHHH
Confidence 35777777666665555554
Done!