Query psy16387
Match_columns 676
No_of_seqs 387 out of 2271
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:02:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlt_A Protein YDJ1, mitochond 100.0 6.7E-52 2.3E-56 426.4 19.7 221 51-276 8-243 (248)
2 3agx_A DNAJ homolog subfamily 100.0 2.2E-37 7.6E-42 304.1 16.9 169 54-287 2-178 (181)
3 3lz8_A Putative chaperone DNAJ 100.0 3.6E-37 1.2E-41 328.4 18.8 194 23-289 115-315 (329)
4 2q2g_A HSP40 protein, heat sho 100.0 7.2E-36 2.5E-40 293.2 17.8 167 53-286 2-177 (180)
5 1c3g_A Heat shock protein 40; 100.0 6.8E-34 2.3E-38 276.7 16.5 156 55-276 1-165 (170)
6 2ctt_A DNAJ homolog subfamily 99.9 7.7E-23 2.6E-27 183.2 3.9 103 54-156 1-103 (104)
7 3i38_A Putative chaperone DNAJ 99.8 7.3E-21 2.5E-25 171.8 9.0 95 184-290 2-96 (109)
8 1xao_A YDJ1, mitochondrial pro 99.8 3.5E-19 1.2E-23 163.7 7.1 94 188-289 1-97 (121)
9 1exk_A DNAJ protein; extended 99.5 4.4E-15 1.5E-19 125.9 6.4 78 71-148 1-78 (79)
10 1nlt_A Protein YDJ1, mitochond 98.8 4E-09 1.4E-13 108.1 6.0 105 97-266 37-153 (248)
11 3lz8_A Putative chaperone DNAJ 98.1 2.6E-06 8.9E-11 90.6 6.6 75 190-268 137-225 (329)
12 3i38_A Putative chaperone DNAJ 98.1 2.8E-06 9.7E-11 76.2 5.6 70 52-190 9-83 (109)
13 1c3g_A Heat shock protein 40; 98.0 5.2E-06 1.8E-10 80.2 5.2 71 194-268 1-80 (170)
14 2q2g_A HSP40 protein, heat sho 98.0 5.5E-06 1.9E-10 80.7 5.4 71 193-267 3-85 (180)
15 1xao_A YDJ1, mitochondrial pro 97.9 1.3E-05 4.3E-10 73.3 5.8 77 53-197 5-92 (121)
16 2qk2_A LP04448P; mini spindles 97.9 8.7E-05 3E-09 74.1 12.3 157 272-437 24-186 (242)
17 3agx_A DNAJ homolog subfamily 97.8 1.4E-05 4.7E-10 78.0 5.3 71 193-268 2-86 (181)
18 1exk_A DNAJ protein; extended 97.8 1.1E-05 3.7E-10 67.8 3.3 47 96-147 9-63 (79)
19 3lcz_A YCZA, inhibitor of trap 97.7 1E-05 3.5E-10 63.2 2.4 31 119-149 8-38 (53)
20 2qk1_A Protein STU2; STU2P, XM 97.7 0.00074 2.5E-08 68.6 15.4 170 265-436 16-200 (249)
21 2qk2_A LP04448P; mini spindles 97.6 0.00013 4.4E-09 72.9 8.8 125 306-437 18-143 (242)
22 3pmq_A Decaheme cytochrome C M 97.6 1.2E-06 4.2E-11 100.5 -7.7 74 58-131 168-257 (669)
23 2qk1_A Protein STU2; STU2P, XM 97.3 0.00076 2.6E-08 68.5 9.8 131 307-438 20-157 (249)
24 2ctt_A DNAJ homolog subfamily 97.1 0.00022 7.4E-09 63.1 3.4 46 97-147 27-80 (104)
25 2bx9_A Anti-trap, AT, tryptoph 97.1 0.00024 8.2E-09 55.4 3.1 29 120-148 9-37 (53)
26 2bx9_A Anti-trap, AT, tryptoph 96.5 0.0013 4.5E-08 51.3 2.6 28 82-112 10-37 (53)
27 1u6g_C TIP120 protein, CAND1; 96.4 0.012 4.1E-07 72.0 12.4 130 304-437 7-143 (1230)
28 4fdd_A Transportin-1; heat rep 96.4 0.0056 1.9E-07 72.0 8.4 130 306-437 177-309 (852)
29 3lcz_A YCZA, inhibitor of trap 96.3 0.00086 2.9E-08 52.3 0.6 32 81-115 9-40 (53)
30 1qgr_A Protein (importin beta 96.3 0.011 3.8E-07 68.7 10.2 132 308-440 371-518 (876)
31 4fdd_A Transportin-1; heat rep 96.3 0.0089 3.1E-07 70.3 9.5 130 308-438 364-494 (852)
32 1u6g_C TIP120 protein, CAND1; 96.1 0.02 6.8E-07 70.1 11.7 130 305-438 50-186 (1230)
33 1ibr_B P95, importin beta-1 su 96.0 0.022 7.4E-07 60.7 10.2 117 316-436 341-460 (462)
34 1ibr_B P95, importin beta-1 su 95.9 0.041 1.4E-06 58.6 11.7 131 305-436 130-268 (462)
35 2vgl_B AP-2 complex subunit be 95.6 0.044 1.5E-06 62.0 11.0 125 306-436 124-248 (591)
36 1qgr_A Protein (importin beta 95.6 0.042 1.5E-06 63.8 11.0 119 316-438 341-462 (876)
37 2bpt_A Importin beta-1 subunit 95.6 0.03 1E-06 64.9 9.7 133 305-439 599-735 (861)
38 2bpt_A Importin beta-1 subunit 95.5 0.046 1.6E-06 63.4 11.1 133 305-438 413-552 (861)
39 4hxt_A De novo protein OR329; 95.3 0.049 1.7E-06 52.9 8.9 132 305-437 4-138 (252)
40 1b3u_A Protein (protein phosph 94.6 0.081 2.8E-06 58.2 9.3 126 306-437 206-334 (588)
41 4ffb_C Protein STU2; tubulin f 94.5 0.2 6.9E-06 50.7 11.3 150 265-420 11-172 (278)
42 1b3u_A Protein (protein phosph 94.4 0.074 2.5E-06 58.5 8.2 121 310-437 171-291 (588)
43 4db6_A Armadillo repeat protei 94.2 0.057 1.9E-06 51.5 5.9 111 304-415 97-208 (210)
44 4hxt_A De novo protein OR329; 93.9 0.084 2.9E-06 51.2 6.7 116 304-420 129-245 (252)
45 4db6_A Armadillo repeat protei 93.7 0.093 3.2E-06 50.0 6.5 133 304-437 55-190 (210)
46 4db8_A Armadillo-repeat protei 93.7 0.083 2.8E-06 51.8 6.2 136 301-437 10-148 (252)
47 1w63_A Adapter-related protein 93.4 0.26 9.1E-06 56.0 10.5 120 305-439 315-434 (618)
48 4ffb_C Protein STU2; tubulin f 93.3 0.36 1.2E-05 48.9 10.3 116 301-419 10-135 (278)
49 1w63_A Adapter-related protein 93.2 0.14 4.7E-06 58.4 7.8 123 302-436 106-228 (618)
50 4db8_A Armadillo-repeat protei 93.1 0.14 4.9E-06 50.0 6.8 134 304-438 55-191 (252)
51 2jdq_A Importin alpha-1 subuni 92.9 0.15 5.1E-06 54.2 7.1 131 305-438 22-160 (450)
52 2of3_A ZYG-9; multifunctional 92.7 0.82 2.8E-05 46.9 12.0 112 307-419 50-164 (266)
53 2jdq_A Importin alpha-1 subuni 92.6 0.11 3.8E-06 55.1 5.7 115 304-419 277-393 (450)
54 3gs3_A Symplekin, LD45768P; he 92.3 1.2 4E-05 45.5 12.4 65 305-374 17-82 (257)
55 1xqr_A HSPBP1 protein; armadil 92.2 0.19 6.6E-06 52.2 6.6 117 304-421 125-243 (296)
56 1wa5_B Importin alpha subunit; 92.1 0.29 9.8E-06 54.0 8.3 133 305-439 217-353 (530)
57 1wa5_B Importin alpha subunit; 91.8 0.19 6.6E-06 55.4 6.4 130 305-438 175-310 (530)
58 4b8j_A Importin subunit alpha- 91.1 0.34 1.2E-05 53.2 7.4 136 301-437 72-212 (528)
59 2x19_B Importin-13; nuclear tr 90.8 2.1 7.4E-05 50.5 14.5 118 316-438 461-579 (963)
60 2of3_A ZYG-9; multifunctional 90.6 1.4 4.9E-05 45.1 11.0 115 312-437 96-217 (266)
61 2iw3_A Elongation factor 3A; a 89.3 0.69 2.4E-05 55.7 8.5 131 305-440 56-188 (986)
62 2vgl_A Adaptor protein complex 88.2 1.6 5.5E-05 49.8 10.3 105 305-420 331-437 (621)
63 4b8j_A Importin subunit alpha- 88.2 0.78 2.7E-05 50.3 7.5 134 304-438 118-255 (528)
64 3o2t_A Symplekin; heat repeat, 87.7 3.3 0.00011 44.6 11.7 65 305-374 27-92 (386)
65 1xqr_A HSPBP1 protein; armadil 87.2 1.8 6.2E-05 44.7 9.2 133 304-439 82-221 (296)
66 3ltm_A Alpha-REP4; protein eng 87.2 1.1 3.6E-05 42.7 6.9 89 304-414 20-108 (211)
67 3ltm_A Alpha-REP4; protein eng 87.1 1.1 3.8E-05 42.5 7.0 88 305-414 83-170 (211)
68 3ltj_A Alpharep-4; protein eng 86.4 1.2 4.2E-05 41.9 6.8 89 304-414 15-103 (201)
69 3tpo_A Importin subunit alpha- 84.9 2.4 8.2E-05 46.8 9.2 153 305-477 295-451 (529)
70 1wa5_C Importin alpha RE-expor 84.9 4.5 0.00015 48.1 12.2 126 309-438 461-605 (960)
71 3ltj_A Alpharep-4; protein eng 84.8 1.9 6.5E-05 40.5 7.3 88 305-414 47-134 (201)
72 3ul1_B Importin subunit alpha- 84.7 2.4 8.3E-05 46.7 9.1 153 305-477 276-432 (510)
73 2vgl_B AP-2 complex subunit be 82.5 3.4 0.00011 46.5 9.2 107 305-423 51-157 (591)
74 1oyz_A Hypothetical protein YI 82.2 7.4 0.00025 38.4 10.8 100 303-419 23-123 (280)
75 1te4_A Conserved protein MTH18 81.5 2.6 8.8E-05 37.3 6.3 85 305-411 44-128 (131)
76 4gmo_A Putative uncharacterize 79.4 1.4 4.6E-05 50.9 4.7 69 305-374 36-105 (684)
77 2x1g_F Cadmus; transport prote 79.4 3.3 0.00011 49.1 8.2 116 318-439 478-596 (971)
78 3tpo_A Importin subunit alpha- 79.1 1.8 6E-05 47.9 5.3 116 305-420 337-453 (529)
79 1upk_A MO25 protein; transfera 78.8 4.4 0.00015 42.9 7.8 121 308-435 169-309 (341)
80 1oyz_A Hypothetical protein YI 78.6 5.5 0.00019 39.4 8.4 99 305-414 56-155 (280)
81 2iw3_A Elongation factor 3A; a 78.3 3.6 0.00012 49.5 8.0 113 303-417 133-258 (986)
82 2vgl_A Adaptor protein complex 78.1 4.5 0.00016 46.0 8.4 106 306-423 77-184 (621)
83 4flb_A Regulation of nuclear P 77.2 12 0.0004 33.6 9.4 105 305-419 10-117 (132)
84 3b2a_A TON_1937, putative unch 76.4 13 0.00046 37.5 10.1 125 305-436 35-159 (265)
85 3ul1_B Importin subunit alpha- 74.3 1.9 6.4E-05 47.6 3.8 115 307-421 320-435 (510)
86 1jdh_A Beta-catenin; beta-cate 74.1 10 0.00035 40.7 9.7 130 305-438 187-319 (529)
87 2z6h_A Catenin beta-1, beta-ca 73.9 8.2 0.00028 43.5 9.1 133 305-439 16-152 (644)
88 2x19_B Importin-13; nuclear tr 73.4 8.9 0.00031 45.2 9.6 91 305-398 531-623 (963)
89 1wa5_C Importin alpha RE-expor 73.3 15 0.00053 43.5 11.6 52 305-356 498-559 (960)
90 3tjz_B Coatomer subunit gamma; 72.9 6.8 0.00023 41.7 7.6 108 307-427 72-179 (355)
91 1ltl_A DNA replication initiat 72.1 6.1 0.00021 40.4 6.8 9 136-144 158-166 (279)
92 2db0_A 253AA long hypothetical 72.1 17 0.00058 35.6 9.3 121 304-437 33-154 (253)
93 3m1i_C Exportin-1; heat repeat 72.1 6.1 0.00021 47.5 7.8 96 323-418 776-880 (1049)
94 2db0_A 253AA long hypothetical 70.8 10 0.00036 37.1 7.5 63 306-373 147-209 (253)
95 2z6g_A B-catenin; FULL-length, 70.7 6.1 0.00021 46.1 7.2 128 305-438 152-287 (780)
96 1jdh_A Beta-catenin; beta-cate 69.9 11 0.00037 40.6 8.6 132 305-438 19-154 (529)
97 3b2a_A TON_1937, putative unch 66.0 18 0.00061 36.6 8.3 125 305-439 77-201 (265)
98 1xm9_A Plakophilin 1; armadill 65.8 15 0.0005 39.8 8.5 129 304-436 3-136 (457)
99 3fga_B Serine/threonine-protei 63.0 12 0.00041 40.5 7.0 110 312-422 257-372 (403)
100 3tjz_B Coatomer subunit gamma; 62.5 29 0.001 36.7 9.9 101 305-417 106-206 (355)
101 2z6g_A B-catenin; FULL-length, 61.9 25 0.00086 40.8 10.1 130 305-437 320-451 (780)
102 1te4_A Conserved protein MTH18 61.2 8.7 0.0003 33.7 4.7 55 305-370 75-129 (131)
103 2npp_B PP2A, B subunit, serine 58.4 11 0.00037 41.4 5.7 109 312-421 290-404 (449)
104 3grl_A General vesicular trans 57.7 22 0.00076 40.7 8.3 118 301-419 120-244 (651)
105 3dad_A FH1/FH2 domain-containi 57.5 21 0.00071 37.7 7.4 108 305-420 120-235 (339)
106 4hat_C Exportin-1; heat repeat 55.4 22 0.00075 43.0 8.3 80 341-420 536-622 (1023)
107 2x1g_F Cadmus; transport prote 54.7 18 0.00061 42.8 7.3 90 305-398 548-639 (971)
108 2z6h_A Catenin beta-1, beta-ca 54.2 50 0.0017 37.0 10.6 130 305-438 184-316 (644)
109 3gs3_A Symplekin, LD45768P; he 54.1 61 0.0021 32.7 10.1 109 305-418 55-175 (257)
110 3m1i_C Exportin-1; heat repeat 51.7 21 0.00072 42.8 7.3 95 305-399 542-644 (1049)
111 2qkd_A Zinc finger protein ZPR 49.8 35 0.0012 36.9 7.8 27 210-244 294-320 (404)
112 4ady_A RPN2, 26S proteasome re 49.1 24 0.00081 42.4 6.9 73 313-392 622-697 (963)
113 3now_A UNC-45 protein, SD10334 49.0 23 0.00078 41.8 6.8 131 305-438 582-719 (810)
114 3oc3_A Helicase MOT1, MOT1; re 48.4 19 0.00067 40.8 5.6 100 305-412 265-400 (800)
115 3l9t_A Putative uncharacterize 48.4 27 0.00093 35.0 6.3 77 305-385 141-217 (240)
116 3nmz_A APC variant protein; pr 48.2 32 0.0011 37.7 7.4 114 305-419 332-453 (458)
117 1w9c_A CRM1 protein, exportin 47.9 38 0.0013 35.4 7.6 137 305-441 71-229 (321)
118 3u0r_A Apoptosis inhibitor 5; 44.8 25 0.00085 38.9 5.8 102 303-419 65-166 (507)
119 3pmq_A Decaheme cytochrome C M 43.0 3.7 0.00013 47.3 -1.2 47 96-145 189-257 (669)
120 3o2t_A Symplekin; heat repeat, 42.4 85 0.0029 33.6 9.4 108 305-418 65-185 (386)
121 3grl_A General vesicular trans 42.1 69 0.0024 36.7 9.1 134 305-440 23-179 (651)
122 3nmw_A APC variant protein; AR 41.6 37 0.0013 35.6 6.5 115 305-420 216-338 (354)
123 2qkd_A Zinc finger protein ZPR 40.8 56 0.0019 35.3 7.7 27 210-244 86-112 (404)
124 1xm9_A Plakophilin 1; armadill 39.9 73 0.0025 34.2 8.7 108 305-414 333-447 (457)
125 3gjx_A Exportin-1; transport, 39.5 50 0.0017 40.2 7.9 116 305-420 523-648 (1073)
126 3tt9_A Plakophilin-2; cell adh 36.0 52 0.0018 32.6 6.2 111 301-414 6-122 (233)
127 3nmw_A APC variant protein; AR 35.9 50 0.0017 34.6 6.4 73 305-377 265-337 (354)
128 2vl6_A SSO MCM N-TER, minichro 35.9 1E+02 0.0036 30.8 8.5 33 148-180 191-233 (268)
129 4atg_A TAF6; transcription, TF 35.4 3.1E+02 0.011 26.4 11.5 114 318-436 23-140 (196)
130 1bq0_A DNAJ, HSP40; chaperone, 34.9 13 0.00043 32.1 1.2 17 19-35 83-99 (103)
131 4hat_C Exportin-1; heat repeat 32.8 48 0.0016 40.0 6.2 100 343-442 799-914 (1023)
132 4ady_A RPN2, 26S proteasome re 32.3 3.2E+02 0.011 32.8 12.9 147 305-468 579-746 (963)
133 2vf7_A UVRA2, excinuclease ABC 30.7 22 0.00076 42.1 2.8 13 100-112 640-652 (842)
134 2r6f_A Excinuclease ABC subuni 28.6 29 0.001 41.6 3.3 15 100-114 755-769 (972)
135 3nmz_A APC variant protein; pr 27.4 79 0.0027 34.5 6.3 72 305-376 381-452 (458)
136 1qo8_A Flavocytochrome C3 fuma 27.1 5.1 0.00017 44.8 -3.4 62 83-144 14-86 (566)
137 1x5b_A Signal transducing adap 25.6 2.8E+02 0.0097 25.6 9.0 69 349-420 56-129 (163)
138 3u0r_A Apoptosis inhibitor 5; 25.3 4.1E+02 0.014 29.4 11.3 136 302-440 133-301 (507)
139 3gjx_A Exportin-1; transport, 23.1 2.3E+02 0.0078 34.4 9.7 102 341-442 823-938 (1073)
140 3now_A UNC-45 protein, SD10334 23.0 1.2E+02 0.004 35.8 7.0 126 305-437 625-760 (810)
141 2jne_A Hypothetical protein YF 22.8 59 0.002 28.1 3.2 51 82-142 33-89 (101)
142 2jrp_A Putative cytoplasmic pr 22.8 1.2E+02 0.0042 25.2 5.1 52 82-143 3-60 (81)
143 3tj1_A RNA polymerase I-specif 22.6 4.2E+02 0.014 30.3 11.1 72 305-377 96-170 (649)
144 3tj1_A RNA polymerase I-specif 22.5 3.2E+02 0.011 31.2 10.2 99 315-424 150-250 (649)
145 1juq_A ADP-ribosylation factor 22.3 2E+02 0.0068 27.0 7.3 92 345-473 32-126 (171)
146 1y0p_A Fumarate reductase flav 22.2 11 0.00036 42.2 -2.0 61 83-143 13-88 (571)
147 2fiy_A Protein FDHE homolog; F 22.0 81 0.0028 32.7 4.8 48 97-144 181-232 (309)
148 2ygr_A Uvrabc system protein A 21.8 46 0.0016 40.0 3.3 14 100-113 773-786 (993)
149 3dad_A FH1/FH2 domain-containi 21.6 6.8E+02 0.023 26.2 11.8 114 304-420 161-290 (339)
150 3j20_Y 30S ribosomal protein S 21.0 54 0.0019 24.7 2.4 7 120-126 37-43 (50)
151 3opb_A SWI5-dependent HO expre 20.9 3.3E+02 0.011 31.8 10.0 114 320-439 576-709 (778)
152 1ltl_A DNA replication initiat 20.8 1.7E+02 0.0059 29.4 7.0 36 98-133 134-169 (279)
153 3nyb_B Protein AIR2; polya RNA 20.1 48 0.0016 27.7 2.1 59 80-140 4-65 (83)
No 1
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=6.7e-52 Score=426.38 Aligned_cols=221 Identities=22% Similarity=0.418 Sum_probs=199.5
Q ss_pred CCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEE--EeeCCce--eeEeCCCC
Q psy16387 51 FGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLET--ISTGPFV--MRSTCRYC 126 (676)
Q Consensus 51 ~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~--~~~G~~~--~~~~C~~C 126 (676)
+.+|+|+.++|+|||||||+|+++++.+++.+.|+.|+|+|++++. ..+|+.|+|+|+++ +++|||+ .+++|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence 4579999999999999999999999999999999999999999988 59999999999753 4568853 67899999
Q ss_pred CCcceEe--cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc------ccCCccEEEEEEEecCCCccccCCCeee
Q psy16387 127 KGSRNLI--KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV------GKSKKEIYITFRVEKSDIFERDGPDIHS 198 (676)
Q Consensus 127 ~G~G~~i--~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g------G~~~GDL~v~i~vk~h~~F~R~G~DL~~ 198 (676)
+|+|++| +++|+.|+|.|++++.++++|+||||+++|++|+|+| ++++|||||+|+++||+.|+|+|+|||+
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 9999999 8999999999999999999999999999999999996 4578999999999999999999999999
Q ss_pred eEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcc--cCCCcEEEEcCCccccccccccccccceecccccCCCCCchh
Q psy16387 199 NAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVK--LSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNT 275 (676)
Q Consensus 199 ~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~g--t~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V~~Pk~~nlTdt 275 (676)
+++|+|+||++|++++||||||+ ++|+||+ + ++||++++|+|+|||..+...+|||||+|.|.+|+..++|++
T Consensus 167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~----g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~ 242 (248)
T 1nlt_A 167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVP----GEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEE 242 (248)
T ss_dssp EEEEEHHHHHHCBCCEEECSSSCEEECCBCT----TTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-------
T ss_pred EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCC----CCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHH
Confidence 99999999999999999999995 8999999 6 999999999999999765447899999999999995458888
Q ss_pred h
Q psy16387 276 E 276 (676)
Q Consensus 276 ~ 276 (676)
+
T Consensus 243 q 243 (248)
T 1nlt_A 243 N 243 (248)
T ss_dssp -
T ss_pred H
Confidence 7
No 2
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=2.2e-37 Score=304.11 Aligned_cols=169 Identities=21% Similarity=0.353 Sum_probs=148.3
Q ss_pred CCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe
Q psy16387 54 SQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI 133 (676)
Q Consensus 54 g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 133 (676)
|+|+.++++|||||||+|+++++.+.+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------------------------- 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------------------------- 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence 568999999999999999999998763
Q ss_pred cccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc------ccCCccEEEEEEEecCCCccccCCCeeeeEeeCceee
Q psy16387 134 KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQA 207 (676)
Q Consensus 134 ~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eA 207 (676)
+|+.|+|.|++++.++++|+||||+++|++|+|+| ++++|||||+|+++||+.|+|+|+||+++++|++.||
T Consensus 29 --~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eA 106 (181)
T 3agx_A 29 --KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREA 106 (181)
T ss_dssp --EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHH
T ss_pred --ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHH
Confidence 23345566677788999999999999999999997 4578999999999999999999999999999999999
Q ss_pred ecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccccc-ccccccccceecccccCCCCCchhhHHHHHHHHH
Q psy16387 208 VLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKK-EKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIR 285 (676)
Q Consensus 208 llG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~-~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~l~ 285 (676)
++|++++|+|+||+ ++|++|+ +++||+++||+|+|||..+ .+.+|||+|+|.|.+|+ ++|+++ +.+|.
T Consensus 107 llG~~i~v~tldG~~~~i~i~~----~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~--~ls~~q----~~~l~ 176 (181)
T 3agx_A 107 LCGCTVNVPTLDGRTIPVVFKD----VIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE--RIPQTS----RTVLE 176 (181)
T ss_dssp HHCEEEEEECTTSCEEEEEECS----CCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCS--CCCHHH----HHHHH
T ss_pred hCCCEEEeECCCCCEEEEECCC----ccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCC--CCCHHH----HHHHH
Confidence 99999999999995 8999999 9999999999999999764 46789999999999999 799988 65555
Q ss_pred HH
Q psy16387 286 EQ 287 (676)
Q Consensus 286 ~q 287 (676)
+.
T Consensus 177 ~~ 178 (181)
T 3agx_A 177 QV 178 (181)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 3
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=3.6e-37 Score=328.40 Aligned_cols=194 Identities=16% Similarity=0.261 Sum_probs=152.7
Q ss_pred CChhhHhHhhhCCCCCCCCCCCCCCCCCCCCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceecc
Q psy16387 23 IDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCH 102 (676)
Q Consensus 23 ~d~~diF~~fFGg~~~fgg~~f~~~~~~~~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~ 102 (676)
.+|+|||++|||+++ .++ + ..+..+|+|+.++|.|||+|+|+|+++++.+.+.+.| |
T Consensus 115 ~~f~diF~~~Fg~~g-~~~---~--~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g------------- 171 (329)
T 3lz8_A 115 QDFDDIFSSMFGQQA-HQR---R--RQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V------------- 171 (329)
T ss_dssp ----------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S-------------
T ss_pred CchhhhhHhhhcCcC-CCC---C--CCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C-------------
Confidence 368899999998521 111 0 1124589999999999999999999999999876532 1
Q ss_pred ccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCc
Q psy16387 103 YCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKK 175 (676)
Q Consensus 103 ~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~G 175 (676)
.| ...+.+.++++|+||||+++|++|||+| |+++|
T Consensus 172 ----~G----------------------------------~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~G 213 (329)
T 3lz8_A 172 ----FG----------------------------------MIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNG 213 (329)
T ss_dssp ----CC-----------------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCC
T ss_pred ----Ce----------------------------------EEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCC
Confidence 11 1123345789999999999999999996 35789
Q ss_pred cEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCcccccccccc
Q psy16387 176 EIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKAR 255 (676)
Q Consensus 176 DL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~r 255 (676)
||||+|+++||+.|+|+|+||+++++|+++||++|++++||||||+++|+||+ +++||+++||+|+|||.. +.+
T Consensus 214 DL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~----gt~~g~~~rl~G~GmP~~--~~r 287 (329)
T 3lz8_A 214 DLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPP----GSQAGQRLRIKGKGLVSK--THT 287 (329)
T ss_dssp CEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECT----TCCTTCEEEETTCSCBCS--SCB
T ss_pred cEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECC----CCCCCCEEEEcCCCCCCC--CCC
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999975 579
Q ss_pred ccccceecccccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 256 VKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 256 GDL~V~~~V~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
|||+|+|+|.+|+ ++|+++ +.+|.+...
T Consensus 288 GDL~v~~~V~~P~--~l~~~q----~~~l~~~~~ 315 (329)
T 3lz8_A 288 GDLFAVIKIVMPT--KPDEKA----RELWQQLAA 315 (329)
T ss_dssp CCEEEEEEECCCS--SCCHHH----HHHHHHHHH
T ss_pred CCEEEEEEEECCC--CCCHHH----HHHHHHHHh
Confidence 9999999999999 799998 778877766
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.2e-36 Score=293.16 Aligned_cols=167 Identities=16% Similarity=0.232 Sum_probs=150.6
Q ss_pred CCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceE
Q psy16387 53 FSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNL 132 (676)
Q Consensus 53 ~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 132 (676)
+|+|+.++++|||||||+|+++++.+.+.+.|+.
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 5789999999999999999999999999887731
Q ss_pred ecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeEeeCce
Q psy16387 133 IKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLS 205 (676)
Q Consensus 133 i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~ 205 (676)
|++++.++++|+||||+++|++|+|+| |+++|||||+|+++||+.|+|+|+||+++++|++.
T Consensus 36 -----------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~ 104 (180)
T 2q2g_A 36 -----------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV 104 (180)
T ss_dssp -----------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHH
T ss_pred -----------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHH
Confidence 456678899999999999999999996 35689999999999999999999999999999999
Q ss_pred eeecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccccc-ccccccccceecccccCCCCCchhhHHHHHHH
Q psy16387 206 QAVLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKK-EKARVKLRKSYKTILPKGQNVTNTEFKVKRIV 283 (676)
Q Consensus 206 eAllG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~-~~~rGDL~V~~~V~~Pk~~nlTdt~fksk~i~ 283 (676)
||++|++++|+||||+ ++|++|+ +++||+++||+|+|||..+ .+.+|||+|+|.|.+|+ ++|+++ +.+
T Consensus 105 eAllG~~i~v~tldG~~v~i~ip~----~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~--~Ls~~q----~~~ 174 (180)
T 2q2g_A 105 RALTGFTCPVTTLDNRNLQIPIKE----IVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPK--SLTPEQ----KKL 174 (180)
T ss_dssp HHHHCEEEEEECTTCCEEEEEECS----CCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCS--CCCHHH----HHH
T ss_pred HHhCCCEEEeeCCCCCEEEEECCC----ccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCC--CCCHHH----HHH
Confidence 9999999999999995 8999999 9999999999999999764 36789999999999999 799988 555
Q ss_pred HHH
Q psy16387 284 IRE 286 (676)
Q Consensus 284 l~~ 286 (676)
|.+
T Consensus 175 l~~ 177 (180)
T 2q2g_A 175 IKE 177 (180)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=6.8e-34 Score=276.69 Aligned_cols=156 Identities=16% Similarity=0.241 Sum_probs=141.2
Q ss_pred CCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec
Q psy16387 55 QPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK 134 (676)
Q Consensus 55 ~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~ 134 (676)
+|+++.++|||+|||+|+++++.+.+.. +
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~----------------------------------------------- 29 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P----------------------------------------------- 29 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-----------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-----------------------------------------------
Confidence 4788999999999999999999998751 0
Q ss_pred ccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-------ccCCccEEEEEEEecCCCccccCCCeeeeEeeCceee
Q psy16387 135 NPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQA 207 (676)
Q Consensus 135 ~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-------G~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eA 207 (676)
.|.+ +.++++|+||||+++|++|+|+| |+++|||||+|+++||+.|+|+|+||+++++|++.||
T Consensus 30 --------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eA 100 (170)
T 1c3g_A 30 --------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKES 100 (170)
T ss_dssp --------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHH
T ss_pred --------CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHH
Confidence 1234 67899999999999999999996 3578999999999999999999999999999999999
Q ss_pred ecCcEEEeeecCCe-EEEEecCCCCcccCCCcEEEEcCCcccccc-ccccccccceecccccCCCCCchhh
Q psy16387 208 VLGGTIRIPGIYDD-QTVLFLEQGSVKLSSHQIMVKTGHKKFVKK-EKARVKLRKSYKTILPKGQNVTNTE 276 (676)
Q Consensus 208 llG~~i~v~tldG~-~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~-~~~rGDL~V~~~V~~Pk~~nlTdt~ 276 (676)
++|++++|+||||+ ++|++|+ +++||+++||+|+|||..+ .+.+|||+|+|.|.+|+ ++|+++
T Consensus 101 llG~~~~v~tldG~~~~i~i~~----~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~--~Ls~~q 165 (170)
T 1c3g_A 101 LLGFSKTIQTIDGRTLPLSRVQ----PVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPI--SLNDAQ 165 (170)
T ss_dssp HHCEEEEEECSSSCEEEEEESS----CCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCS--SCCTTH
T ss_pred hCCCeEEeeCCCCCEEEEECCC----ccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCC--CCCHHH
Confidence 99999999999996 8999999 9999999999999999764 34789999999999999 788887
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.7e-23 Score=183.19 Aligned_cols=103 Identities=53% Similarity=1.002 Sum_probs=97.5
Q ss_pred CCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe
Q psy16387 54 SQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI 133 (676)
Q Consensus 54 g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 133 (676)
|.|+.++|+|||||||+|.++++.+++.+.|+.|+|+|++++..+.+|+.|+|+|+++..+|+|+.+++|+.|+|+|+++
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 56788999999999999999999999999999999999999998999999999999887789999999999999999999
Q ss_pred cccCCCCCCCceeeeeeEEEEEe
Q psy16387 134 KNPCTTCDGKGQFAQRQTITVPV 156 (676)
Q Consensus 134 ~~~C~~C~G~G~v~~~~~l~V~I 156 (676)
+++|+.|+|.|+++++++++|++
T Consensus 81 ~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 81 ISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSCCSSSSSCSEECCCCSSCCSC
T ss_pred CCcCCCCCCeeEEEEEEEEEEEc
Confidence 99999999999999999888765
No 7
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.83 E-value=7.3e-21 Score=171.80 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=86.9
Q ss_pred ecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceec
Q psy16387 184 EKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYK 263 (676)
Q Consensus 184 k~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~ 263 (676)
+||+.|+|+|+||+++++|++.||++|++++|+|+||.++|+||+ |+++|+++||+|+|||.. + .+|||+|+|.
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~----g~~~G~~~rl~G~G~p~~-~-~~GDL~v~~~ 75 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPP----GSQAGQRLRIKGKGLVSK-T-HTGDLFAVIK 75 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECT----TCCTTCEEEETTCSCBCS-S-CBCCEEEEEE
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCC----CcCcCeEEEECCccCCCC-C-CCcCEEEEEE
Confidence 689999999999999999999999999999999999999999999 999999999999999983 3 7999999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHH
Q psy16387 264 TILPKGQNVTNTEFKVKRIVIREQLKE 290 (676)
Q Consensus 264 V~~Pk~~nlTdt~fksk~i~l~~q~~~ 290 (676)
|.+|+ ++|+++ +..|.+.+..
T Consensus 76 V~~P~--~Ls~~q----~~~l~~l~~~ 96 (109)
T 3i38_A 76 IVMPT--KPDEKA----RELWQQLAAA 96 (109)
T ss_dssp ECCCS--SCCHHH----HHHHHHHHHH
T ss_pred EECCC--CCCHHH----HHHHHHHHhh
Confidence 99999 799998 7777776654
No 8
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.5e-19 Score=163.72 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=80.8
Q ss_pred CccccCCCeeeeEeeCceeeecCcEEEeeecCCe-EEEEecCCCCcc--cCCCcEEEEcCCccccccccccccccceecc
Q psy16387 188 IFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD-QTVLFLEQGSVK--LSSHQIMVKTGHKKFVKKEKARVKLRKSYKT 264 (676)
Q Consensus 188 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~-~~v~Ip~~~~~g--t~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V 264 (676)
.|+|+|+||+++++|++.||++|++++|+|+||+ +.|+||+ | +++|+++||+|+|||..++..+|||+|+|.|
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~----g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V 76 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVP----GEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTI 76 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECT----TSCCCTTCEEEETTCSCC------CCCEEEEEEE
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCC----CCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence 4999999999999999999999999999999996 9999999 7 9999999999999997655478999999999
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHH
Q psy16387 265 ILPKGQNVTNTEFKVKRIVIREQLK 289 (676)
Q Consensus 265 ~~Pk~~nlTdt~fksk~i~l~~q~~ 289 (676)
.+|+...+++++ +.+|.+.+.
T Consensus 77 ~~P~~~~ls~~q----~~~l~~l~~ 97 (121)
T 1xao_A 77 KFPENHFTSEEN----LKKLEEILP 97 (121)
T ss_dssp ECCCTTCSCHHH----HHHHHHHSC
T ss_pred ECCCCCCCCHHH----HHHHHHHcc
Confidence 999955599998 666766653
No 9
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.55 E-value=4.4e-15 Score=125.91 Aligned_cols=78 Identities=37% Similarity=0.939 Sum_probs=71.7
Q ss_pred CceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEecccCCCCCCCceeee
Q psy16387 71 GVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQ 148 (676)
Q Consensus 71 G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 148 (676)
|++++|.+++...|+.|+|+|..++....+|+.|+|+|.+...+|+|+.+.+|+.|+|+|+++.++|+.|+|.|++++
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER 78 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence 677899999999999999999988888899999999998876669888889999999999999999999999998764
No 10
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.79 E-value=4e-09 Score=108.11 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=74.1
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceE------------ecccCCCCCCCceeeeeeEEEEEeCCCCcCCc
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNL------------IKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQ 164 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~------------i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~ 164 (676)
....|+.|+|+|.. +.. ..+|+.|+|+|++ ...+|+.|+|.|.+...+.
T Consensus 37 r~~~C~~C~G~G~~-----~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~------------- 97 (248)
T 1nlt_A 37 KQILCKECEGRGGK-----KGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKD------------- 97 (248)
T ss_dssp EEEECTTTTTCSBS-----TTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTS-------------
T ss_pred EEEeCCCCcCccCC-----CCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCC-------------
Confidence 35689999999964 233 3799999999975 4579999999995541100
Q ss_pred EEEEccccCCccEEEEEEEecCCCccccCCCeeeeEeeCceeeecCcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 165 TVRMNVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 165 ~irl~gG~~~GDL~v~i~vk~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
.-.-|.+.-.+.. ...++|+||+ |+..|+.++++|
T Consensus 98 ----------------------------------------~C~~C~G~g~~~~-~~~l~V~Ip~----G~~~G~~ir~~g 132 (248)
T 1nlt_A 98 ----------------------------------------RCKSCNGKKVENE-RKILEVHVEP----GMKDGQRIVFKG 132 (248)
T ss_dssp ----------------------------------------BCSSSTTSCEEEE-EEEEEEEECT----TCCTTCEEEETT
T ss_pred ----------------------------------------CCcccCCCceEee-eEEEEEEECC----CccCCCEEEEee
Confidence 0111222222211 1247899999 999999999999
Q ss_pred Cccccccccccccccceecccc
Q psy16387 245 HKKFVKKEKARVKLRKSYKTIL 266 (676)
Q Consensus 245 ~G~p~~~~~~rGDL~V~~~V~~ 266 (676)
+|-+. .++..|||+|.+.++.
T Consensus 133 ~G~~~-~~g~~GDl~v~i~v~~ 153 (248)
T 1nlt_A 133 EADQA-PDVIPGDVVFIVSERP 153 (248)
T ss_dssp CSCCC-TTCBCCCEEEEEEECC
T ss_pred eecCC-CCCCcceEEEEEEEec
Confidence 99875 3457899999998753
No 11
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.11 E-value=2.6e-06 Score=90.64 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred cccCCCeeeeEeeCceeeecCcEEEeeec--------------CCeEEEEecCCCCcccCCCcEEEEcCCcccccccccc
Q psy16387 190 ERDGPDIHSNAEISLSQAVLGGTIRIPGI--------------YDDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKAR 255 (676)
Q Consensus 190 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl--------------dG~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~r 255 (676)
.+.|.||.+++.|+|.||..|....|..- ...++|+||+ |+++|+++|++|+|.+...++..
T Consensus 137 ~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~----Gv~~G~~Irl~G~G~~g~~gg~~ 212 (329)
T 3lz8_A 137 AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPA----GVVDGQRIRLKGQGTPGENGGPN 212 (329)
T ss_dssp CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECT----TCCTTCEEEESSCSCCC---CCC
T ss_pred cCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCC----CCCCCCEEEEcccccCCCCCCCC
Confidence 35688888888888888888876655432 1247899999 99999999999999987667789
Q ss_pred ccccceecccccC
Q psy16387 256 VKLRKSYKTILPK 268 (676)
Q Consensus 256 GDL~V~~~V~~Pk 268 (676)
|||+|.+.|+.-+
T Consensus 213 GDL~v~I~v~~h~ 225 (329)
T 3lz8_A 213 GDLWLVIHIAPHP 225 (329)
T ss_dssp CCEEEEECCCCCS
T ss_pred CcEEEEEEEecCC
Confidence 9999999886543
No 12
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=98.10 E-value=2.8e-06 Score=76.22 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=56.3
Q ss_pred CCCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcce
Q psy16387 52 GFSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRN 131 (676)
Q Consensus 52 ~~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 131 (676)
..|.|+..++.|+|.||+.|+++++..-
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl---------------------------------------------------- 36 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 36 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence 3688999999999999999998776521
Q ss_pred EecccCCCCCCCceeeeeeEEEEEeCCCCcCCcEEEEcc-c----cCCccEEEEEEEecCCCcc
Q psy16387 132 LIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-G----KSKKEIYITFRVEKSDIFE 190 (676)
Q Consensus 132 ~i~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~g-G----~~~GDL~v~i~vk~h~~F~ 190 (676)
.| .++|+||+|+++|++++++| | +..|||||+++|.-.....
T Consensus 37 -----------dG------~~~v~ip~g~~~G~~~rl~G~G~p~~~~~GDL~v~~~V~~P~~Ls 83 (109)
T 3i38_A 37 -----------KE------SILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPTKPD 83 (109)
T ss_dssp -----------SS------CEEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEEEECCCSSCC
T ss_pred -----------CC------CEEEeeCCCcCcCeEEEECCccCCCCCCCcCEEEEEEEECCCCCC
Confidence 01 36899999999999999998 3 2469999999998555443
No 13
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=97.97 E-value=5.2e-06 Score=80.20 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=59.9
Q ss_pred CCeeeeEeeCceeeecCcEEEeeecC---------CeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccceecc
Q psy16387 194 PDIHSNAEISLSQAVLGGTIRIPGIY---------DDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKT 264 (676)
Q Consensus 194 ~DL~~~~~Isl~eAllG~~i~v~tld---------G~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V~~~V 264 (676)
.|+.+++.|||.||+.|++.+|..-. ..++|+||+ |+.+|+.+|++|+|-+...++..|||++.+.+
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~----G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v 76 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKP----GWKAGTKITYKNQGDYNPQTGRRKTLQFVIQE 76 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCT----TCCTTCEEEESSCSSBCSSSSCBCEEEEEEEE
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCC----CccCCCEEEEeccccCCCCCCccccEEEEEEE
Confidence 37899999999999999988886421 237899999 99999999999999876667889999999998
Q ss_pred cccC
Q psy16387 265 ILPK 268 (676)
Q Consensus 265 ~~Pk 268 (676)
+--+
T Consensus 77 ~~h~ 80 (170)
T 1c3g_A 77 KSHP 80 (170)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6443
No 14
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=97.97 E-value=5.5e-06 Score=80.74 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=59.3
Q ss_pred CCCeeeeEeeCceeeecCcEEEeeecC------------CeEEEEecCCCCcccCCCcEEEEcCCccccccccccccccc
Q psy16387 193 GPDIHSNAEISLSQAVLGGTIRIPGIY------------DDQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRK 260 (676)
Q Consensus 193 G~DL~~~~~Isl~eAllG~~i~v~tld------------G~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL~V 260 (676)
|.|+.+++.|||.||+.|++.++..-. ..++|+||+ |+..|+++|++|+|-+...++..|||++
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~----G~~~G~~ir~~g~G~~g~~gg~~GDl~v 78 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKP----GWKDGTKLTYSGEGDQESPGTSPGDLVL 78 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECT----TCCTTCEEEETTCSCCSSTTSCCCEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECC----CCcCCcEEEEeeccCCCCCCCccccEEE
Confidence 789999999999999999988776321 237899999 9999999999999977445778899999
Q ss_pred eeccccc
Q psy16387 261 SYKTILP 267 (676)
Q Consensus 261 ~~~V~~P 267 (676)
.+.++--
T Consensus 79 ~i~~~~h 85 (180)
T 2q2g_A 79 IIQTKTH 85 (180)
T ss_dssp EEEECCC
T ss_pred EEEEEec
Confidence 9987643
No 15
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.3e-05 Score=73.28 Aligned_cols=77 Identities=10% Similarity=0.080 Sum_probs=59.6
Q ss_pred CCCCeEEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceE
Q psy16387 53 FSQPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNL 132 (676)
Q Consensus 53 ~g~d~~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 132 (676)
.|.|+.+++.|+|.||+.|+++++..-
T Consensus 5 ~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------- 31 (121)
T 1xao_A 5 DGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------- 31 (121)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------------
T ss_pred ECCeEEEEEEcCHHHHhCCCEEEEecC-----------------------------------------------------
Confidence 588999999999999999998776421
Q ss_pred ecccCCCCCCCceeeeeeEEEEEeCCC--CcCCcEEEEcc-cc------CCccEEEEEEEecCCC--ccccCCCee
Q psy16387 133 IKNPCTTCDGKGQFAQRQTITVPVPAG--VEDGQTVRMNV-GK------SKKEIYITFRVEKSDI--FERDGPDIH 197 (676)
Q Consensus 133 i~~~C~~C~G~G~v~~~~~l~V~IP~G--v~~G~~irl~g-G~------~~GDL~v~i~vk~h~~--F~R~G~DL~ 197 (676)
. .+.++|+||+| +++|++++++| |. ..|||||+++|+-... +..+..+++
T Consensus 32 ----------d-----G~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l 92 (121)
T 1xao_A 32 ----------S-----GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKL 92 (121)
T ss_dssp ----------T-----SCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHH
T ss_pred ----------C-----CCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
Confidence 0 13578999999 99999999997 21 4699999999996655 555444443
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.87 E-value=8.7e-05 Score=74.12 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=119.9
Q ss_pred CchhhHHHHHHHHHHHHHHc-C-CcchhhhhhhhhHHHHHHHh-ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHH
Q psy16387 272 VTNTEFKVKRIVIREQLKER-G-ENELLSVQRKLSVKELMSRL-RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILD 348 (676)
Q Consensus 272 lTdt~fksk~i~l~~q~~~~-~-~~~~~~~~r~l~lk~lLs~l-~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~ 348 (676)
+++++++.|+.++......- + +.-....-.++ +..+...+ ++.|..+|..|+..|..+...-.. ....+...|++
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i-~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~~~~~ilp 101 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGAL-VSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSNYASACVP 101 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHH-HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHH-HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 46778888888887765321 1 11000001222 45566778 599999999999999999854332 35678999999
Q ss_pred hhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhC-Cc-c-chhh
Q psy16387 349 SVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC-PI-L-TANY 425 (676)
Q Consensus 349 ~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~-p~-l-~~~~ 425 (676)
.+...+.|....||.++...|..++...+ ++.++-.+..++.|-++.||..++.+|..+++.+ |. . ...+
T Consensus 102 ~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 102 SLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 99999999999999999999999987554 4556677788899999999999999999999998 44 3 3457
Q ss_pred hhhhhHHHHHhc
Q psy16387 426 RSLLPHFLDMIS 437 (676)
Q Consensus 426 ~k~l~~f~~lls 437 (676)
..+++..+.+|.
T Consensus 175 ~~l~p~l~~~l~ 186 (242)
T 2qk2_A 175 KLLTTSLVKTLN 186 (242)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 789999999884
No 17
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=97.82 E-value=1.4e-05 Score=78.02 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=56.0
Q ss_pred CCCeeeeEeeCceeeecCcEEEeeec------CC--------eEEEEecCCCCcccCCCcEEEEcCCccccccccccccc
Q psy16387 193 GPDIHSNAEISLSQAVLGGTIRIPGI------YD--------DQTVLFLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKL 258 (676)
Q Consensus 193 G~DL~~~~~Isl~eAllG~~i~v~tl------dG--------~~~v~Ip~~~~~gt~~g~~lrl~G~G~p~~~~~~rGDL 258 (676)
|.|+.+++.|||.||..|.+.+|..- .| .++|+||+ |+..|+.+|++|+|-+.. ++..|||
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~----G~~~G~~ir~~G~G~~~~-~g~~GDl 76 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKK----GWKEGTKITFPKEGDQTS-NNIPADI 76 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECT----TCCTTCEEEETTCSCCCS-SSCCCCE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECC----CccCCcEEEEeeccccCC-CCCcccE
Confidence 56899999999999999998877532 12 26899999 999999999999998754 5678999
Q ss_pred cceecccccC
Q psy16387 259 RKSYKTILPK 268 (676)
Q Consensus 259 ~V~~~V~~Pk 268 (676)
++.+.++--+
T Consensus 77 ~v~i~~~~h~ 86 (181)
T 3agx_A 77 VFVLKDKPHN 86 (181)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEeccc
Confidence 9999886443
No 18
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.79 E-value=1.1e-05 Score=67.81 Aligned_cols=47 Identities=30% Similarity=0.799 Sum_probs=38.2
Q ss_pred CcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec--------ccCCCCCCCceee
Q psy16387 96 TKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK--------NPCTTCDGKGQFA 147 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~ 147 (676)
.....|+.|+|+|.. ++....+|+.|+|+|+++. .+|+.|+|.|.+.
T Consensus 9 ~~~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 9 PTLEECDVCHGSGAK-----PGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp CCEEECGGGTTTSBC-----SSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred ccceECCCCcccccC-----CCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 457899999999964 2344679999999998864 5999999999764
No 19
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.75 E-value=1e-05 Score=63.20 Aligned_cols=31 Identities=35% Similarity=0.779 Sum_probs=28.3
Q ss_pred eeEeCCCCCCcceEecccCCCCCCCceeeee
Q psy16387 119 MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQR 149 (676)
Q Consensus 119 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~ 149 (676)
++++|+.|+|+|+++.++|+.|+|.|++.+.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 5789999999999999999999999988765
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00074 Score=68.59 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=130.4
Q ss_pred cccCCC--CCchhhHHHHHHHHHHHHH-Hc-CCcchh--hhh-hhhhHHHHHHHh-ccCCchhhhhHHHHHHHhhhcCC-
Q psy16387 265 ILPKGQ--NVTNTEFKVKRIVIREQLK-ER-GENELL--SVQ-RKLSVKELMSRL-RHNNSAVKQDGLSGLLEIITLNP- 335 (676)
Q Consensus 265 ~~Pk~~--nlTdt~fksk~i~l~~q~~-~~-~~~~~~--~~~-r~l~lk~lLs~l-~h~n~~~RkdaL~gl~~ll~~~P- 335 (676)
++|+.. .+..+.++-|+.++.+... .. +..... ... ..+ +..+...+ ++-|..+|..|+.-|..+.+.-.
T Consensus 16 kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~-~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 16 KLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL-LGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH-HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH-HHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 566632 2467788889999988777 42 311111 111 222 56666777 79999999999999988875432
Q ss_pred ccchh-hcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 336 TSVIK-SHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 336 ~~~~~-~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
.. .. .|...+++.++..+-|..+.||+++...|..++..+++....++++.++-.|..+|.|=.+.||+-++.+|.-+
T Consensus 95 ~~-f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 95 PG-FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp TT-SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 23 46 89999999999999999999999999999999998877554455889999999999999999999999999999
Q ss_pred HHhCCcc----chhh-hhhhhHHHHHh
Q psy16387 415 LEQCPIL----TANY-RSLLPHFLDMI 436 (676)
Q Consensus 415 l~~~p~l----~~~~-~k~l~~f~~ll 436 (676)
++.++.. .... ..+++....+|
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHh
Confidence 9999852 2334 56777777777
No 21
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.61 E-value=0.00013 Score=72.88 Aligned_cols=125 Identities=13% Similarity=0.209 Sum_probs=106.9
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccc-cCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLML-DISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~-D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+++++.+.+.+-..|++|+..|..++..+|. +...++..+++.+..++. |.+..||.+.++.|..++..+.+ .+.+|
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHHH
Confidence 3567888888999999999999999998884 456677899999999996 99999999999999998876543 67899
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhc
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMIS 437 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls 437 (676)
.+.++.-|...+.+-.+.||..+...|+-+++..+ ...+++.++..|.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----LEAQQESIVESLS 143 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHc
Confidence 99999999999999999999999999999998765 2456777666653
No 22
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.56 E-value=1.2e-06 Score=100.45 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=58.4
Q ss_pred EEEEeeeHHhHhcCceeeeeeeeeeecCCCCCCCcCCCC---cceeccccCceeEEEEe------------eCCc-eeeE
Q psy16387 58 EIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGT---KAQKCHYCNGTGLETIS------------TGPF-VMRS 121 (676)
Q Consensus 58 ~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~GtG~~~g~---~~~~C~~C~G~G~~~~~------------~G~~-~~~~ 121 (676)
.+.+.++|+|++.|.++++++.+...|..|+|+|+++|. .+.+|+.|+|+.....+ .|.| ....
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 367889999999999999999999999999999999987 68999999999411000 1211 2345
Q ss_pred eCCCCCCcce
Q psy16387 122 TCRYCKGSRN 131 (676)
Q Consensus 122 ~C~~C~G~G~ 131 (676)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7888888774
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00076 Score=68.48 Aligned_cols=131 Identities=10% Similarity=0.168 Sum_probs=110.0
Q ss_pred HHHHHhccCCchhhhhHHHHHHH-hhhcCCccch--hhcHHHHHHhhhccc-ccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLE-IITLNPTSVI--KSHFSSILDSVSPLM-LDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~-ll~~~P~~~~--~~~~~~il~~~~~li-~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
++...+.+.+-..|++||..|.. ++..+|. +. ..++..++..+.+.+ .|.+..||.++++.|..+...+....+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~-i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKK-LKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCC-BCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCc-cccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 56778888999999999999999 9988884 44 567789999999999 7999999999999999998766524577
Q ss_pred -ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccch--hhhhhhhHHHHHhcc
Q psy16387 383 -PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA--NYRSLLPHFLDMISS 438 (676)
Q Consensus 383 -p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~--~~~k~l~~f~~lls~ 438 (676)
+|...++.-|...+..-.+.||.-+...|+-+.++++.... +...+++..+..|..
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~ 157 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH 157 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999864322 245688877777653
No 24
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00022 Score=63.14 Aligned_cols=46 Identities=35% Similarity=0.808 Sum_probs=30.9
Q ss_pred cceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe--------cccCCCCCCCceee
Q psy16387 97 KAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI--------KNPCTTCDGKGQFA 147 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~ 147 (676)
....|+.|+|+|.. +.....+|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 27 ~~~~C~~C~G~G~~-----~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 27 IMDTCERCNGKGNE-----PGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CCEECSSSSSSSSC-----TTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred eeeECCCCcCCccC-----CCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 45778888888743 333456788888888653 35788888887553
No 25
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.13 E-value=0.00024 Score=55.44 Aligned_cols=29 Identities=28% Similarity=0.772 Sum_probs=21.8
Q ss_pred eEeCCCCCCcceEecccCCCCCCCceeee
Q psy16387 120 RSTCRYCKGSRNLIKNPCTTCDGKGQFAQ 148 (676)
Q Consensus 120 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 148 (676)
+.+|+.|+|+|.++..+|+.|+|.|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 56777777777777778888888887654
No 26
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.47 E-value=0.0013 Score=51.25 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=16.5
Q ss_pred eecCCCCCCCcCCCCcceeccccCceeEEEE
Q psy16387 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETI 112 (676)
Q Consensus 82 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~ 112 (676)
..|+.|+|+|...+ .+|+.|+|+|.+..
T Consensus 10 ~~C~~C~GsG~~~~---~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 10 VACPKCERAGEIEG---TPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEETT---EECTTTTTSSEEEC
T ss_pred ccCCCCcceeccCC---CCCccCCCCccEEE
Confidence 46666666665542 45666666665544
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.44 E-value=0.012 Score=72.03 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=107.1
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+..+|.++.+.+..+|+.|+..|.+.+...+...-+.....++..+...+.|.+..||.++...|..+...+++ +
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~----~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH----H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH----H
Confidence 467899999999999999999999998866543232345678888888888999999999999999999887776 5
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc-------chhhhhhhhHHHHHhc
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL-------TANYRSLLPHFLDMIS 437 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l-------~~~~~k~l~~f~~lls 437 (676)
+.+.++..+..++.+-.+.||.-|...|..+.+..+.. ...|..+++..+..+.
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc
Confidence 66677777888888889999999999999999988743 2358889998888886
No 28
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.35 E-value=0.0056 Score=71.99 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=104.6
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
..++..+++-++.+|..|+.-|...+...|. .+..++..+++.+..++.|.+..||++++..|..+... .++.+.||+
T Consensus 177 ~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~-~~~~~~~~l 254 (852)
T 4fdd_A 177 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV-RMDRLLPHM 254 (852)
T ss_dssp HHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-CHHHHGGGH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 3445556788999999999999988877663 34567888999999999999999999999999988874 457799999
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCC--c-cchhhhhhhhHHHHHhc
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP--I-LTANYRSLLPHFLDMIS 437 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p--~-l~~~~~k~l~~f~~lls 437 (676)
+-++.++...+.|-.++||..|+.|+..+.+.-. . +.....++++..+..|.
T Consensus 255 ~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~ 309 (852)
T 4fdd_A 255 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999988776432 1 12234567777777773
No 29
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.29 E-value=0.00086 Score=52.29 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=18.6
Q ss_pred eeecCCCCCCCcCCCCcceeccccCceeEEEEeeC
Q psy16387 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTG 115 (676)
Q Consensus 81 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G 115 (676)
...|+.|+|+|.... ..|+.|+|+|.+...+|
T Consensus 9 ~~~C~~C~GsG~~i~---~~C~~C~G~G~v~~~~G 40 (53)
T 3lcz_A 9 ETTCPNCNGSGREEP---EPCPKCLGKGVILTAQG 40 (53)
T ss_dssp EEECTTTTTSCEETT---EECTTTTTSSEEECHHH
T ss_pred eccCcCCcccccCCC---CcCCCCCCcEEEEEEeC
Confidence 356777777765442 55666666665544433
No 30
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.26 E-value=0.011 Score=68.70 Aligned_cols=132 Identities=13% Similarity=0.171 Sum_probs=107.1
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh-hcccHH
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE-LAPLFE 386 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~-i~p~~~ 386 (676)
+...+.+.+..+|..|+.-|..+....+...+..++..+++.+.+.+.|.+..||.++...|..+....++.. ..++++
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 3455677888899999999988886554234557888999999999999999999999999998887666544 578999
Q ss_pred HHHHHHhhhhcccchhhccccHHHHHHHHHhCC--------------c-cchhhhhhhhHHHHHhcccc
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP--------------I-LTANYRSLLPHFLDMISSQT 440 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p--------------~-l~~~~~k~l~~f~~lls~~~ 440 (676)
.++..+..+|.+ .+.||..+...|.-+.+.++ . +..+...+++.++.++....
T Consensus 451 ~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~ 518 (876)
T 1qgr_A 451 PLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC
Confidence 999999999988 49999999999999998863 1 33456789999999987653
No 31
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.26 E-value=0.0089 Score=70.26 Aligned_cols=130 Identities=16% Similarity=0.082 Sum_probs=108.1
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHH
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEI 387 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~ 387 (676)
+...+.+-+..+|..|+.-|..+....+ ..+..++..+++.+.+++.|.+..||.++...|..+...+++....++++-
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 442 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 442 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3445677888999999999999886655 345678999999999999999999999999999887776665667888888
Q ss_pred HHHHHhhhhcccchhhccccHHHHHHHHHhCCcc-chhhhhhhhHHHHHhcc
Q psy16387 388 VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMISS 438 (676)
Q Consensus 388 l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f~~lls~ 438 (676)
++..+..+|..-.++||..|...|.-+.+.++.. ..+...+++.++.++..
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH
Confidence 8888888888788999999999999999988753 34567888888888864
No 32
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.10 E-value=0.02 Score=70.12 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=107.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChh-----
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEE----- 379 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~----- 379 (676)
+..++..+.+-|..+|+.|+.-|..+...-|. .++..|++.+...+.|.+..||.++...|..+...+++.
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~----~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 56778888899999999999999999865552 577889999999999999999999999999988877765
Q ss_pred hhcccHHHHHHHHhhhhc-ccchhhccccHHHHHHHHHhCCcc-chhhhhhhhHHHHHhcc
Q psy16387 380 ELAPLFEIVVRYLACAMS-HLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMISS 438 (676)
Q Consensus 380 ~i~p~~~~l~~~i~~AMT-Hi~~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f~~lls~ 438 (676)
....+.+.++..+..+|. +-.+++|..|+.+|.-+++.+|.. ..+...+++.++..|..
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~ 186 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC
T ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC
Confidence 355678889999999998 678899999999999999998863 34456788888887754
No 33
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.01 E-value=0.022 Score=60.73 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=96.0
Q ss_pred CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhh
Q psy16387 316 NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACA 395 (676)
Q Consensus 316 n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~A 395 (676)
+.++|+.|..-|..+....+. ..+..+++.+...+.|.+..||.+++..|..+.....++.+.++.+.++.++..+
T Consensus 341 ~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 416 (462)
T 1ibr_B 341 DWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (462)
T ss_dssp CCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred cchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 347899999999988877763 3445678888888889999999999999999998777778899999999999999
Q ss_pred hcccchhhccccHHHHHHHHHhCCccc---hhhhhhhhHHHHHh
Q psy16387 396 MSHLDAGVREDSLLIIDVLLEQCPILT---ANYRSLLPHFLDMI 436 (676)
Q Consensus 396 MTHi~~~Ir~dsl~~Ld~ll~~~p~l~---~~~~k~l~~f~~ll 436 (676)
|.+-.+.||.-|...|.-+.+..+... .+...+++..+..|
T Consensus 417 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999987522 34556666655444
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.89 E-value=0.041 Score=58.60 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHhccC--CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccC--ChHHHHHHHHHHHHHhccCChhh
Q psy16387 305 VKELMSRLRHN--NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDI--SATTRKAAVKLLSAMFSQVTEEE 380 (676)
Q Consensus 305 lk~lLs~l~h~--n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~--~~~VR~~l~~ll~~l~~~~~~~~ 380 (676)
+..++..+.+- ++.+|..||.-|..+........+..++..+++.+..++.|. +..||.++++.|..+++.+.. .
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-~ 208 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-N 208 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-H
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-h
Confidence 45667777777 788999999999999976633456788999999999999999 799999999999887653321 1
Q ss_pred hcc--cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccch-hhh-hhhhHHHHHh
Q psy16387 381 LAP--LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA-NYR-SLLPHFLDMI 436 (676)
Q Consensus 381 i~p--~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~-~~~-k~l~~f~~ll 436 (676)
+.. +.+.++-.+..+..+-.++||..++..|.-+.+.+|.... ... .+++-++..+
T Consensus 209 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 2234455555667788899999999999999999996543 344 5666555544
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.59 E-value=0.044 Score=61.99 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=86.7
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
..+...+.|.|+.||+.|...+..+...+|. .++. ..+++.+..++.|.+..||.+++.+|..+.+.-+....-.+.
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 3466778999999999999999999998884 3322 468899999999999999999999999987744422133444
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHh
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMI 436 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~ll 436 (676)
+..+.++...+...++-.|. .+|++|-.++|.-...-.++++....+|
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~---~il~~l~~l~~~~~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQI---FILDCLSNYNPKDDREAQSICERVTPRL 248 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHH---HHHHHHHTSCCCSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCCCchHHH---HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 55555666666666666654 6666666666642222234444444433
No 36
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.57 E-value=0.042 Score=63.78 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=98.4
Q ss_pred CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhh
Q psy16387 316 NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACA 395 (676)
Q Consensus 316 n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~A 395 (676)
+.++|+.|+.-|..+....+. ..+..+++.+...+.|.+..||.+++..|..+...++++.+.++.+.++.++..+
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~ 416 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 567999988888888765553 3356788888888899999999999999999988777788889999999999999
Q ss_pred hcccchhhccccHHHHHHHHHhCCcc---chhhhhhhhHHHHHhcc
Q psy16387 396 MSHLDAGVREDSLLIIDVLLEQCPIL---TANYRSLLPHFLDMISS 438 (676)
Q Consensus 396 MTHi~~~Ir~dsl~~Ld~ll~~~p~l---~~~~~k~l~~f~~lls~ 438 (676)
+.+-.+.||.-|...|.-+.+.+|.. ......+++..+..|..
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 462 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999998752 23456777777777643
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.57 E-value=0.03 Score=64.94 Aligned_cols=133 Identities=8% Similarity=0.118 Sum_probs=105.6
Q ss_pred HHHHHHHhccCCc-hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNS-AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~-~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..++..+.+.+. .+|.+++..+..+....... ...++..+++.+...+.|.+..||.+++.++..+...++ +.+.|
T Consensus 599 ~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~ 676 (861)
T 2bpt_A 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-EDFRR 676 (861)
T ss_dssp HHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GGGHH
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc-hhccc
Confidence 3445555666666 89999998888877655432 456788888888888889999999999999998888776 57889
Q ss_pred cHHHHHHHHhhhhcccc--hhhccccHHHHHHHHHhCCccc-hhhhhhhhHHHHHhccc
Q psy16387 384 LFEIVVRYLACAMSHLD--AGVREDSLLIIDVLLEQCPILT-ANYRSLLPHFLDMISSQ 439 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~--~~Ir~dsl~~Ld~ll~~~p~l~-~~~~k~l~~f~~lls~~ 439 (676)
|++.++..+...+.+-. +++|..++..|.-+...++.-. .+...+++..+..+.+.
T Consensus 677 ~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 99999888888887754 8999999999999999998643 34567888888877653
No 38
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.53 E-value=0.046 Score=63.37 Aligned_cols=133 Identities=11% Similarity=0.156 Sum_probs=101.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccc-hhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC---hhh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSV-IKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT---EEE 380 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~-~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~---~~~ 380 (676)
+..++..+++-++.+|..|+.-|-.+...-+..+ ...++..+++.+...+.|. ..||.++...|..+...++ .+.
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence 4556677788899999988776666554322211 2457888999999888886 9999999999988777654 578
Q ss_pred hcccHHHHHHHHhhhhcccc--hhhccccHHHHHHHHHhCCccc-hhhhhhhhHHHHHhcc
Q psy16387 381 LAPLFEIVVRYLACAMSHLD--AGVREDSLLIIDVLLEQCPILT-ANYRSLLPHFLDMISS 438 (676)
Q Consensus 381 i~p~~~~l~~~i~~AMTHi~--~~Ir~dsl~~Ld~ll~~~p~l~-~~~~k~l~~f~~lls~ 438 (676)
+.||++.++..+...+.+-. +++|..++..|..+.+..|.-. .....+++.+++.|..
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 552 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999998988888654 7899999999999999999543 3345677777766653
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.30 E-value=0.049 Score=52.87 Aligned_cols=132 Identities=13% Similarity=0.166 Sum_probs=93.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..++..+++.++.+|.+|+.-|..+....|.......-..+++.+..++.+.+..||..+...|..+... .++....+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHH
Confidence 56788899999999999999999999977762211111224788899999999999999999999988652 12222222
Q ss_pred HH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhc
Q psy16387 385 FE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMIS 437 (676)
Q Consensus 385 ~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls 437 (676)
.. -.+..+...|.+-+++||..++..|.-|....|..... ....++..+.+|.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~ 138 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 11 13445555666778999999999999998776643222 2346777777776
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.63 E-value=0.081 Score=58.16 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=90.6
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
.-++..+.+-++.+|+.|+..|-.+....|.. .....+++.+..++.|.+..||.++...|..+....+++. +.
T Consensus 206 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~ 279 (588)
T 1b3u_A 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI---TK 279 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH---HH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc---ch
Confidence 34455567778889998888888877655532 2334466666667788899999999999988877655543 33
Q ss_pred HHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccc---hhhhhhhhHHHHHhc
Q psy16387 386 EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILT---ANYRSLLPHFLDMIS 437 (676)
Q Consensus 386 ~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~---~~~~k~l~~f~~lls 437 (676)
+.++.++...|.+-.++||..+...|.-+.+.++.-. ..+..+++.+..++.
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 334 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence 4456666777888889999999999999999887431 235567777777664
No 41
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.2 Score=50.75 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=100.9
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHc--CCcchh---hhhhhhhHHHHH-HHhccCCchhhhhHHHHHHHhhhcCCcc-
Q psy16387 265 ILPKGQNVTNTEFKVKRIVIREQLKER--GENELL---SVQRKLSVKELM-SRLRHNNSAVKQDGLSGLLEIITLNPTS- 337 (676)
Q Consensus 265 ~~Pk~~nlTdt~fksk~i~l~~q~~~~--~~~~~~---~~~r~l~lk~lL-s~l~h~n~~~RkdaL~gl~~ll~~~P~~- 337 (676)
++|-...+..++||.|..++.+..+.- ...... ....-..+..++ ..+++-|..+-..||.-|..++......
T Consensus 11 klpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 11 TLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred cCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 467667899999999999998865421 111100 000011112233 3457999999999999999988654321
Q ss_pred ----chhhcHHHHHHhhhcc-cccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHH
Q psy16387 338 ----VIKSHFSSILDSVSPL-MLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIID 412 (676)
Q Consensus 338 ----~~~~~~~~il~~~~~l-i~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld 412 (676)
.....+..+++.++.- +.|..+.+|++++..+-.+..... ....++-++..+|.|=+|.||..++.+|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT------SITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS------SSHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1123445566666654 678889999999888876654322 12344567788999999999999999999
Q ss_pred HHHHhCCc
Q psy16387 413 VLLEQCPI 420 (676)
Q Consensus 413 ~ll~~~p~ 420 (676)
-+++.|+.
T Consensus 165 ~~l~~fg~ 172 (278)
T 4ffb_C 165 ELMAAFGL 172 (278)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99999874
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.37 E-value=0.074 Score=58.48 Aligned_cols=121 Identities=19% Similarity=0.128 Sum_probs=88.7
Q ss_pred HHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHH
Q psy16387 310 SRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVV 389 (676)
Q Consensus 310 s~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~ 389 (676)
..+.+-++.+|+.|+..|-++....+. ......+++.+..++.|.+..||.+++..|..+...++++.. .+.++
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~ 244 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL---EALVM 244 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH---HHHTH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH---HHHHH
Confidence 445788889999999999988866553 234556777777888899999999999999888877776543 33445
Q ss_pred HHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhc
Q psy16387 390 RYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMIS 437 (676)
Q Consensus 390 ~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls 437 (676)
.++...+.+-+..||.-+...|..+.+.++.-. ....+++.|+.++.
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-TKTDLVPAFQNLMK 291 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHHHHHHT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-chhHHHHHHHHHhC
Confidence 555566677788899999999999888765210 12356777777774
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.16 E-value=0.057 Score=51.48 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+.-++..+++.++.+|..|+.-|..+....|...-...-..+++.++.++.+.+..||..+...|..+... +++....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~ 175 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQA 175 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CcHHHHH
Confidence 367788899999999999999999999876553211111234788889999999999999999999988763 2333222
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHH
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLL 415 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll 415 (676)
+.. -.+..+...+.|-+++||+.|+..|.-|-
T Consensus 176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 222 24555666677889999999999987664
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.93 E-value=0.084 Score=51.19 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=87.0
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+..++..+++.++.+|..|+.-|..+...+|...-...-..+++.+..++.+.+..||..++..|..+.. ..++....
T Consensus 129 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 207 (252)
T 4hxt_A 129 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKA 207 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 36778888999999999999999999886655321111223478888999999999999999999998865 23333333
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
+.+ -++..+...|.+-.+++|+.|+..|.-|..+.+.
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 322 2455666667788999999999999999988764
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.73 E-value=0.093 Score=49.95 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=91.0
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+.-++..+++.++.+|..|+.-|..+...++......--...++.++.++.|.+..||..+...|..+... .++....
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~ 133 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQA 133 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 367788889999999999999999998866653211111123678888899999999999999999988652 3333222
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhc
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMIS 437 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls 437 (676)
.++ -++..+...|.+-++++|..|+..|.-|....|..... ....++..+.++.
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh
Confidence 111 13334444456668999999999999999876643221 1245666666665
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.70 E-value=0.083 Score=51.77 Aligned_cols=136 Identities=11% Similarity=0.140 Sum_probs=94.5
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE 380 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~ 380 (676)
....+..+..++++-++.+|.+|+..|+.+++.++...-..--..+++.++.++.+.+..||.++...|..+...- ++.
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~ 88 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 88 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHH
Confidence 4445788999999999999999999999988764322111122347888999999999999999999999886522 222
Q ss_pred hcccHHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhc
Q psy16387 381 LAPLFEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMIS 437 (676)
Q Consensus 381 i~p~~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls 437 (676)
...++.. .+..+...|.+-.++||..|+..|.-|....+..... -...++..+.+|.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 148 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh
Confidence 2222221 4555566677778999999999998886655432111 2246777777774
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.38 E-value=0.26 Score=56.05 Aligned_cols=120 Identities=14% Similarity=0.243 Sum_probs=89.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
..-+...+.+.++++|.-||..|..+...+|. ++..|.. .+.+++.|.+..||...+.+|-.+.. ++.+...
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-~~~~~~~----~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~i 386 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHN-AVQRHRS----TIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGM 386 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-HHGGGHH----HHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-HHHHHHH----HHHHHccCCChhHHHHHHHHHHHHcc---cccHHHH
Confidence 34444557788899999999999999998884 4455544 55666789999999999999988854 4445555
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhccc
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQ 439 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls~~ 439 (676)
++-++-|+. +.+.++|..+...+..+-+.||.- ....++.++++|+-.
T Consensus 387 v~eL~~~l~----~~d~e~r~~~v~~I~~la~k~~~~---~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 387 MKELLYFLD----SCEPEFKADCASGIFLAAEKYAPS---KRWHIDTIMRVLTTA 434 (618)
T ss_dssp HHHHHHHHH----HCCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHhc
Confidence 666666665 578999999999999999998732 223356666666544
No 48
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.36 Score=48.87 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=79.2
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchh----hcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccC
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIK----SHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQV 376 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~----~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~ 376 (676)
.+|. +-+++.|.|=+.|++|+..|.+++...|..... ..+..++..+...+.|....|....+.+|..++...
T Consensus 10 sklp---l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 10 TTLP---LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp -CCC---HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred hcCC---HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 4555 348899999999999999999999887743211 123344445556678999999999999999888755
Q ss_pred Chhh-----hcccHHHHHHHHhh-hhcccchhhccccHHHHHHHHHhCC
Q psy16387 377 TEEE-----LAPLFEIVVRYLAC-AMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 377 ~~~~-----i~p~~~~l~~~i~~-AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.... ...++..++..|.- .+..-.+.+|..|+..|..+++...
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 5432 23344445555543 3566678899999999988887653
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.22 E-value=0.14 Score=58.42 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=85.4
Q ss_pred hhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 302 KLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 302 ~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
.+.+..+...+.|.|+.+|--||.-|-.+-. | + ....+++.+..++.|.++.||+++...+..+.... ++.+
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~-~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v 177 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S-E----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM 177 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H-H----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H-H----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH
Confidence 3456667778899999999999999988762 2 2 23467888888889999999999999998887744 3455
Q ss_pred cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHh
Q psy16387 382 APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMI 436 (676)
Q Consensus 382 ~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~ll 436 (676)
..+ +..+...+..-++.|+..|+..|.-+.+..|.....+.++++.++.+|
T Consensus 178 ~~~----~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L 228 (618)
T 1w63_A 178 EMF----LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRIL 228 (618)
T ss_dssp GGG----GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHH
T ss_pred HHH----HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 443 344556666777777777777777666555543333444445444444
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.10 E-value=0.14 Score=50.03 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=94.0
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+.-++..+++.++.+|..|+.-|..+...+|.......-...++.++.++.+.+..||.++...|..+... ++..+..
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~ 133 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQA 133 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHH
Confidence 356788889999999999999999999876653211111123788899999999999999999999988652 2222122
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhcc
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISS 438 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~ 438 (676)
+.. -.+..+...|.+-+++||..++..|.-|....|..... -...++..+.+|..
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC
Confidence 221 14455555667778999999999999988766643222 13567777888764
No 51
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.91 E-value=0.15 Score=54.16 Aligned_cols=131 Identities=11% Similarity=0.165 Sum_probs=89.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhh--cCCccchhhcHH--HHHHhhhcccccC-ChHHHHHHHHHHHHHhccCChh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIIT--LNPTSVIKSHFS--SILDSVSPLMLDI-SATTRKAAVKLLSAMFSQVTEE 379 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~--~~P~~~~~~~~~--~il~~~~~li~D~-~~~VR~~l~~ll~~l~~~~~~~ 379 (676)
+..++..+.+-++.+|..|+..|+.+++ .+|. +...+. .+++.++.++.+. +..||.++...|..+...-+ +
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~--~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~ 98 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPP--IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-L 98 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCC--HHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-H
Confidence 5678888888899999999999999987 3342 122222 4777778888888 89999999999998876322 2
Q ss_pred hhcccH-HHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhcc
Q psy16387 380 ELAPLF-EIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMISS 438 (676)
Q Consensus 380 ~i~p~~-~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls~ 438 (676)
....++ .-++..+...+.+-.++||+-|+..|.-|....|...... ..+++-++.+|..
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 160 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 221111 1134444445566689999999999999888766432221 2466677777763
No 52
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.72 E-value=0.82 Score=46.89 Aligned_cols=112 Identities=18% Similarity=0.252 Sum_probs=90.7
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh--hccc
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE--LAPL 384 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~--i~p~ 384 (676)
++..++-|.+-+.|.+|+..|.+.+++.|.+ +..++.-++.=+.=.+.|....|=...+.+|..++..+.... +..+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~-~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRS-LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH-HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 6678898999999999999999999988853 455666666666667779999999999999998877554332 4444
Q ss_pred -HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 385 -FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 385 -~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
...++.|+--=|-|--..||..+-.+|..+.+.||
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC
Confidence 46788888888888889999999999999998888
No 53
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.65 E-value=0.11 Score=55.11 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=84.8
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcH-HHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHF-SSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~-~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
-+..++..+.+.++.+|+.|+.-|..+....+. .....+ ..+++.+..++.|.+..||.++...|..+....+++.+.
T Consensus 277 ~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRA-QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 366778888998999999999999998865542 122111 257778888888999999999999998876544555554
Q ss_pred ccHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 383 PLFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 383 p~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
.++. -++..+...+.+-.++||..++..|.-|++..+
T Consensus 356 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 356 YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 4332 244455555666689999999999999998776
No 54
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.27 E-value=1.2 Score=45.50 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=55.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhh-cCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIIT-LNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS 374 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~-~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~ 374 (676)
+-++|...+-+++.+|-+.|..++|++- ++| ..+..+++.++++..|.+..||+.+..++.+.+.
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp-----~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~ 82 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCA-----ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK 82 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG-----GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH-----hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 4678888877777899999999999664 344 4677899999999999999999999999988875
No 55
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.20 E-value=0.19 Score=52.17 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred hHHHHHHHhcc-CCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 304 SVKELMSRLRH-NNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h-~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
.+.-|+..+++ .+..+|+.|+--|-.+...+|...-...-...++.++.++.+.+..||..+..+|..+... +++.+.
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~ 203 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKG 203 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHH
Confidence 46778888885 4788999999999998877764211111134677888888899999999999999988754 444433
Q ss_pred ccHHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCCcc
Q psy16387 383 PLFEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL 421 (676)
Q Consensus 383 p~~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l 421 (676)
-+.+. ++..+..-|.|-.++||+-++..|.-|+...+..
T Consensus 204 ~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 33221 3344444466778999999999999999887743
No 56
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.09 E-value=0.29 Score=53.98 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcC-CccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLN-PTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~-P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..++..+.+.+..+|+.|+.-|..+.... |. .-......+++.++.++.|.+..||..++..|..+... +++.+..
T Consensus 217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~ 294 (530)
T 1wa5_B 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ-PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQA 294 (530)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC-CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-CHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC-CcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 667788888888899999999999988654 42 22344567888889999999999999999999988753 3333332
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhccc
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISSQ 439 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~~ 439 (676)
++. -++..|...|.|-.++||..|+..|.-|....+..... -..+++.++.+|...
T Consensus 295 ~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 295 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353 (530)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC
Confidence 222 23344445567888999999999999888766543222 135777788888654
No 57
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.78 E-value=0.19 Score=55.35 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=92.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccC----Chhh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQV----TEEE 380 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~----~~~~ 380 (676)
+.-|+..+++.++.+|..|+.-|..+....|..--...-..+++.++.++.|.+..||..+...|..+.... ....
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 567788888899999999999999998655421101111246778888888999999999999999887422 2223
Q ss_pred hcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhcc
Q psy16387 381 LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISS 438 (676)
Q Consensus 381 i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~ 438 (676)
....++.| ...|.|-.++||.+++..|.-|....|..... ...+++..+.+|..
T Consensus 255 ~~~~l~~L----~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 255 VSQALPTL----AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp HGGGHHHH----HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHhHHHHH----HHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC
Confidence 33444444 44556778999999999999998776643322 23577778888753
No 58
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.08 E-value=0.34 Score=53.23 Aligned_cols=136 Identities=10% Similarity=0.139 Sum_probs=90.0
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCC-ccchhhcHHHHHHhhhcccccCC-hHHHHHHHHHHHHHhccCCh
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNP-TSVIKSHFSSILDSVSPLMLDIS-ATTRKAAVKLLSAMFSQVTE 378 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P-~~~~~~~~~~il~~~~~li~D~~-~~VR~~l~~ll~~l~~~~~~ 378 (676)
...++..++..+.+-++.+|.+|+..|..+++..+ ...-...-..+++.++.++.+.+ ..||.++...|..+...- +
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~ 150 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-S 150 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-H
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-H
Confidence 34458899999999899999999999999997664 11111222346777888888876 999999999998887622 2
Q ss_pred hhhcccHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhc
Q psy16387 379 EELAPLFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMIS 437 (676)
Q Consensus 379 ~~i~p~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls 437 (676)
+....++. -.+..+...|.+-.++||.-|+..|.-|....|..... ....++..+.+|.
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence 22222111 13334444555668899999999999888765532221 1235666666663
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.79 E-value=2.1 Score=50.50 Aligned_cols=118 Identities=9% Similarity=0.108 Sum_probs=78.5
Q ss_pred CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhh
Q psy16387 316 NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACA 395 (676)
Q Consensus 316 n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~A 395 (676)
++...+||+...--.+......-....+..+++ +++-+.+..+.||.+++.++..+..-+... ..+++.++-+|..+
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHA 537 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence 344567777777667766553322345666777 344556668889999999997543321111 13444455566667
Q ss_pred hcccchhhccccHHHHHHHHHhCCc-cchhhhhhhhHHHHHhcc
Q psy16387 396 MSHLDAGVREDSLLIIDVLLEQCPI-LTANYRSLLPHFLDMISS 438 (676)
Q Consensus 396 MTHi~~~Ir~dsl~~Ld~ll~~~p~-l~~~~~k~l~~f~~lls~ 438 (676)
|.+ +.||..|...|.-|.+.++. +..+...+++.+..++..
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 766 89999999999999998885 345567788888888763
No 60
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.64 E-value=1.4 Score=45.12 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=88.9
Q ss_pred hccCCchhhhhHHHHHHHhhhc----CCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHH
Q psy16387 312 LRHNNSAVKQDGLSGLLEIITL----NPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEI 387 (676)
Q Consensus 312 l~h~n~~~RkdaL~gl~~ll~~----~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~ 387 (676)
+.+-|.++=..+|..|..++.. ++ .+.....+.+++.++..+-|....||.++..+|+.+....|+ ..
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y-~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~ 167 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTET-PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LK 167 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HH
Confidence 3477888888888888888642 22 234455788999999999999999999999999877553342 33
Q ss_pred HHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhh---hHHHHHhc
Q psy16387 388 VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLL---PHFLDMIS 437 (676)
Q Consensus 388 l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l---~~f~~lls 437 (676)
+.-|+..||+|=+...|+.++..|..+++.++.- ..+.+ +....+|+
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~ 217 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVG 217 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGG
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHc
Confidence 5677888999999999999999999999999843 34556 66666665
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.31 E-value=0.69 Score=55.65 Aligned_cols=131 Identities=9% Similarity=0.132 Sum_probs=99.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCc-cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPT-SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~-~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..+...++..++. -.|+..+..+....+. ...+.++-.+++.+.....|+.+.||+|+-..+..|+..++++.+..
T Consensus 56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~ 133 (986)
T 2iw3_A 56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA 133 (986)
T ss_dssp HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555666665555 6678888887755432 13467777889999999999999999999999999999999999887
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh-hhhhhhHHHHHhcccc
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLDMISSQT 440 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~lls~~~ 440 (676)
.++.++-|+.++= -=..+.-||++|+-|.+.+|..++. ...|+|-.-+.|--.+
T Consensus 134 ~~~~~~~~~~~~~---kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k 188 (986)
T 2iw3_A 134 LLPHLTNAIVETN---KWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTK 188 (986)
T ss_dssp HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhcccc---chHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCc
Confidence 8888887775432 2457888999999999999965544 5678887777764333
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.21 E-value=1.6 Score=49.75 Aligned_cols=105 Identities=20% Similarity=0.357 Sum_probs=80.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCc-cchhhcHHHHHHhhhcccc-cCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPT-SVIKSHFSSILDSVSPLML-DISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~-~~~~~~~~~il~~~~~li~-D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
++-+...+.+..+++|-=||..|..++..+|. ..+..|...+ ...+. |.|..||...+.+|-.+ +.++.+.
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i----~~~L~~d~d~~Ir~~aL~lL~~l---~~~~Nv~ 403 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETV----INALKTERDVSVRQRAVDLLYAM---CDRSNAQ 403 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHH----HHHHTTCCCHHHHHHHHHHHHHH---CCHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHH----HHHhccCCCHhHHHHHHHHHHHH---cChhhHH
Confidence 33444445677889999999999999999872 2334454444 44455 99999999999998877 5677777
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..+.-+.-|+. +.+.++|.+++.-+..+-+.||.
T Consensus 404 ~Iv~eL~~yl~----~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 404 QIVAEMLSYLE----TADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCC
Confidence 77777777765 46899999999999999988884
No 63
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=88.17 E-value=0.78 Score=50.29 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=90.5
Q ss_pred hHHHHHHHhccCC-chhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 304 SVKELMSRLRHNN-SAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n-~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
-+.-|+..+.+.+ +.+|..|+..|..+...+|.......-..+++.++.++.|.+..||.+++..|..|...-+ ..-.
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~ 196 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-KCRD 196 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-HHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-hhHH
Confidence 3677788888876 8999999999999987655321111112478888899999999999999999988865222 1100
Q ss_pred ccHH-HHHHHHhhhh-cccchhhccccHHHHHHHHHhCCccc-hhhhhhhhHHHHHhcc
Q psy16387 383 PLFE-IVVRYLACAM-SHLDAGVREDSLLIIDVLLEQCPILT-ANYRSLLPHFLDMISS 438 (676)
Q Consensus 383 p~~~-~l~~~i~~AM-THi~~~Ir~dsl~~Ld~ll~~~p~l~-~~~~k~l~~f~~lls~ 438 (676)
.... -.+..+...| .+-.+.+|..++..|.-|....|... .....+++.++.+|..
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~ 255 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 255 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC
Confidence 0000 0223333444 56789999999999999998876432 2235577777777753
No 64
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.65 E-value=3.3 Score=44.59 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=53.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhh-hcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEII-TLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS 374 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll-~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~ 374 (676)
+-++|...+-.+..+|-+.|..++|++ .++| +-+..+++.++++..|.+..||+....+|.+.+.
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dp-----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~ 92 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIINKDP-----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK 92 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCG-----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 356777766555678999999999975 4666 3456699999999999999999999999998875
No 65
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=87.23 E-value=1.8 Score=44.72 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=91.6
Q ss_pred hHHHHHH-HhccCCchhhhhHHHHHHHhhhcCCccchhhcH--HHHHHhhhcccc-cCChHHHHHHHHHHHHHhccCChh
Q psy16387 304 SVKELMS-RLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHF--SSILDSVSPLML-DISATTRKAAVKLLSAMFSQVTEE 379 (676)
Q Consensus 304 ~lk~lLs-~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~--~~il~~~~~li~-D~~~~VR~~l~~ll~~l~~~~~~~ 379 (676)
.+.-++. .|+|-++.+|..|+.-|-.+...+|.. ...+ ...++.++.++. |.+..||+.++..|..|...-+ .
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~--~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~-~ 158 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI--QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE-A 158 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH-H
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH--HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc-H
Confidence 4677888 899999999999999999999888742 1111 135666677776 4588999999999988764222 2
Q ss_pred hhcccHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhccc
Q psy16387 380 ELAPLFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMISSQ 439 (676)
Q Consensus 380 ~i~p~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls~~ 439 (676)
....|.. -.+..+...+.+-.+.+|.+|...|.-|....|...... ...++-.+.||...
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~ 221 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE 221 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence 2222221 122233333445689999999999999999877654443 34778888888643
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.16 E-value=1.1 Score=42.73 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=66.8
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
.+..++..+++-+..+|..|+..|.++-. | ..++.+..++.|.+..||.+++..|..+.. ++
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~---------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~---- 81 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--E---------RAVEPLIKALKDEDAWVRRAAADALGQIGD---ER---- 81 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GG----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--c---------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---HH----
Confidence 46778899999999999999999987642 2 245666777889999999999999988743 22
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
.++. +..++.|-++.||.-++..|.-+
T Consensus 82 ~~~~----L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 82 AVEP----LIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GHHH----HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHcCCCHHHHHHHHHHHHHh
Confidence 2233 33456788899999988887654
No 67
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.06 E-value=1.1 Score=42.55 Aligned_cols=88 Identities=22% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..++..+++.++.+|..|+..|..+-. | ..++.+..++.|.+..||.++...|..+.. ++ .
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~----~ 144 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---ER----A 144 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GG----G
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---HH----H
Confidence 4567788889999999999998887631 2 144556667789999999999999987733 11 2
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
++. +...+.+-++.||.-+...|..+
T Consensus 145 ~~~----L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 145 VEP----LIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHH----HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHcCCCHHHHHHHHHHHHHh
Confidence 222 23345667788888777766655
No 68
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.36 E-value=1.2 Score=41.92 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=66.7
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+...++..+++-++.+|..|+..|..+-. + ..++.+..++.|.+..||.+++..|..+.. ++
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---~~---- 76 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--E---------RAVEPLIKALKDEDAWVRRAAADALGQIGD---ER---- 76 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GG----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--h---------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---HH----
Confidence 35678999999999999999999987642 1 245566677789999999999999987743 22
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
.+ ..+..++.|-++.||..++..|.-+
T Consensus 77 ~~----~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 77 AV----EPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp GH----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 22 2333467788999999998887654
No 69
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=84.89 E-value=2.4 Score=46.84 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=102.2
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-+...+.|-+..++..|+.-|..+.+..+.......-..+++.+..++.+.+..||.++...|..|.. -+++.....
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~-~~~~~~~~v 373 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA-GRQDQIQQV 373 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT-SCHHHHHHH
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 4567788899999999999999999887655311111112355667778889999999999999988765 233333322
Q ss_pred HHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCCc-cchh--hhhhhhHHHHHhcccccccccceeeEEecCCCcchh
Q psy16387 385 FEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI-LTAN--YRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTT 460 (676)
Q Consensus 385 ~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~-l~~~--~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~ 460 (676)
++. ++..+...|.+-..+||..|...|.-|...... -... -...++-+++||... +.
T Consensus 374 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~-------------------d~ 434 (529)
T 3tpo_A 374 VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-------------------DT 434 (529)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-------------------CH
T ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC-------------------CH
Confidence 221 333444455667889999999998888776542 1222 124677788888532 23
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16387 461 VFRIKVLTRLRSMLLAI 477 (676)
Q Consensus 461 ~~R~kvL~~L~~fL~~~ 477 (676)
+-+..+|..|.++|+..
T Consensus 435 ~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44667888888888764
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=84.87 E-value=4.5 Score=48.09 Aligned_cols=126 Identities=12% Similarity=0.165 Sum_probs=93.6
Q ss_pred HHHhccC---CchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhcc----------
Q psy16387 309 MSRLRHN---NSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQ---------- 375 (676)
Q Consensus 309 Ls~l~h~---n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~---------- 375 (676)
+..+.+. ++-+|..|+..|-..-..- .+.++..+++.++..+.|.+..||.++...|..++..
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~ 536 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccc
Confidence 4445655 7789999998777655322 2457888999999999999999999999999988763
Q ss_pred CChhhhcccHHHHHHHHhhhhcccc-----hhhccccHHHHHHHHHhCCcc-chhhhhhhhHHHHHhcc
Q psy16387 376 VTEEELAPLFEIVVRYLACAMSHLD-----AGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMISS 438 (676)
Q Consensus 376 ~~~~~i~p~~~~l~~~i~~AMTHi~-----~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f~~lls~ 438 (676)
...+.+.||++.++-.+..++.... .......+..|.-+++.++.- ..+...+++..+.++..
T Consensus 537 ~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~ 605 (960)
T 1wa5_C 537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTI 605 (960)
T ss_dssp SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHH
T ss_pred ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2467799999999999988887752 224567788888888888753 34455666666666654
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.81 E-value=1.9 Score=40.55 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=65.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..++..+.+-++.+|..|+..|-.+- .| ..++.+..++.|.+..||.+++..|..+.. ++ .
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~----~ 108 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIG--DE---------RAVEPLIKALKDEDGWVRQSAAVALGQIGD---ER----A 108 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GG----G
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC--CH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH----H
Confidence 467788889999999999999887763 12 234555667789999999999999988743 11 2
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
++. +..++.+-++.||.-+...|..+
T Consensus 109 ~~~----L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 109 VEP----LIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHH----HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHcCCCHHHHHHHHHHHHHh
Confidence 233 34456788999999998888765
No 72
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=84.73 E-value=2.4 Score=46.66 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=102.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-+...+.|.+..++..|+.-|..+.+..+.......-..+++.+..++.+.+..||.++...|..|.. -+++.....
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a-~~~~~~~~v 354 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA-GRQDQIQQV 354 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc-CcHHHHHHH
Confidence 5567788899999999999999999887655311111112356677788889999999999999988765 233333322
Q ss_pred HH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCc-cchh--hhhhhhHHHHHhcccccccccceeeEEecCCCcchh
Q psy16387 385 FE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI-LTAN--YRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTT 460 (676)
Q Consensus 385 ~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~-l~~~--~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~ 460 (676)
++ -++..+...|.+-..+||..|...|.-|...... -... -...++-+++||... +.
T Consensus 355 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~-------------------d~ 415 (510)
T 3ul1_B 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-------------------DT 415 (510)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-------------------CH
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-------------------CH
Confidence 22 1334444455666899999999999888776542 1221 124677788888532 23
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16387 461 VFRIKVLTRLRSMLLAI 477 (676)
Q Consensus 461 ~~R~kvL~~L~~fL~~~ 477 (676)
+-+..+|..|.++|++.
T Consensus 416 ~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677888899998864
No 73
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=82.49 E-value=3.4 Score=46.47 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+-+.+..+.+.+..+||-+-.++..+...+|. . +--+++.+..-+.|.+..||..+++.|..+. .+ ..
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e-~----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~----~~ 118 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD-M----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD----KI 118 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH-H----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG----GG
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCch-H----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH----HH
Confidence 45677788889999999999999998876663 2 2234677777888999999999987776552 22 24
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccch
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA 423 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~ 423 (676)
.+.++.-+..++.|-++.||.-|...|--+.+.+|.+..
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc
Confidence 556667778889999999999999999999998887543
No 74
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.23 E-value=7.4 Score=38.44 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=71.5
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
.++..++..+.+-++.+|..|+..|.++- .| ..++.+..++.|.+..||.++...|..+.. +++.+.
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~ 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCED 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccch
Confidence 34677889999999999999999998764 12 256667778889999999999999987653 222222
Q ss_pred ccHHHHHHHHh-hhhcccchhhccccHHHHHHHHHhCC
Q psy16387 383 PLFEIVVRYLA-CAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 383 p~~~~l~~~i~-~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
+ ++..+. .+..+-++.||..+...|.-+-...|
T Consensus 90 ~----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~ 123 (280)
T 1oyz_A 90 N----VFNILNNMALNDKSACVRATAIESTAQRCKKNP 123 (280)
T ss_dssp H----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG
T ss_pred H----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC
Confidence 2 222232 35677788899999888887765443
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=81.49 E-value=2.6 Score=37.28 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..++..+++-++.+|..|+..|-.+=. ...++.+..++.|.+..||.++...|..+.. ++
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~----- 104 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER----- 104 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH-----
Confidence 3566777888888999999887765431 1235555666679999999999999987742 11
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHH
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLII 411 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~L 411 (676)
.+..+..++.+-++.||..+...|
T Consensus 105 ---a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 105 ---VRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp ---HHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 223334445667778887776654
No 76
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=79.45 E-value=1.4 Score=50.91 Aligned_cols=69 Identities=9% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc-chhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS-VIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS 374 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~-~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~ 374 (676)
+--++.+|++-++..|..|+.-|.+++. .|.. -+..+-..|..-+.++++|.+..||.++..+|+.|..
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4457888999999999999999999985 5532 1112222344456788999999999999999987754
No 77
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=79.37 E-value=3.3 Score=49.06 Aligned_cols=116 Identities=9% Similarity=0.116 Sum_probs=77.5
Q ss_pred hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccc--cCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhh
Q psy16387 318 AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLML--DISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACA 395 (676)
Q Consensus 318 ~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~--D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~A 395 (676)
...+||....-..+...+..-...++..+++ +++.+. |....||.+++.++..+..-+.... .+++.++-+|..+
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAINLLVRG 554 (971)
T ss_dssp CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHH
Confidence 3455555554555555543323456677777 555555 6799999999999976554333221 5777778888888
Q ss_pred hcccchhhccccHHHHHHHHHhCCcc-chhhhhhhhHHHHHhccc
Q psy16387 396 MSHLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMISSQ 439 (676)
Q Consensus 396 MTHi~~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f~~lls~~ 439 (676)
| + +.|+..|-..|.-|.+.++.. ..+...|++.+..++...
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 8 4 899999999999999988853 445678888888888864
No 78
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=79.08 E-value=1.8 Score=47.92 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-|...+++.++.+|++|..-|..+...++......--..+++.++.++.+.+..||.++...|..+...-+++.+.-.
T Consensus 337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34567788999999999999999988866553211111234777788888999999999999998776654455443322
Q ss_pred HHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 385 FEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 385 ~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
++. .+..+..-++.-.++|+.-+|..|.-+++..+.
T Consensus 417 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 417 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 211 122233334556899999999999999887654
No 79
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.76 E-value=4.4 Score=42.85 Aligned_cols=121 Identities=13% Similarity=0.326 Sum_probs=89.1
Q ss_pred HHHHhccCCchhhhhHHHHHHHhhhcCCc---cchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 308 LMSRLRHNNSAVKQDGLSGLLEIITLNPT---SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 308 lLs~l~h~n~~~RkdaL~gl~~ll~~~P~---~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
++.-+..-|--+=.||..-++++|++|+. +.+..|+.......-.|+...+=.+|++.++||..|+- + +..
T Consensus 169 fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl--d----r~N 242 (341)
T 1upk_A 169 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL--D----RHN 242 (341)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH--S----GGG
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh--C----chH
Confidence 44444555566789999999999999984 25567888999999999999999999999999987653 1 245
Q ss_pred HHHHHHHHhhh---------hcccchhhccccHHHHHHHHHhCCc--------cchhhhhhhhHHHHH
Q psy16387 385 FEIVVRYLACA---------MSHLDAGVREDSLLIIDVLLEQCPI--------LTANYRSLLPHFLDM 435 (676)
Q Consensus 385 ~~~l~~~i~~A---------MTHi~~~Ir~dsl~~Ld~ll~~~p~--------l~~~~~k~l~~f~~l 435 (676)
+.+++.||++. +..-+..||-.|..++.+++.. |. |..+..|+|.-+-++
T Consensus 243 ~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN-P~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN-PNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC-SSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC-CCCChHHHHHHHHHHHHHHHHHHhC
Confidence 56666665542 4555788999999999999965 31 234556666555444
No 80
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=78.57 E-value=5.5 Score=39.40 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=69.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhh-cccccCChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVS-PLMLDISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~-~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..++..+.+-++.+|..|+..|-.+-.. + .....+++-+. .+..|.+..||.++...|..+....+ .
T Consensus 56 ~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~-----~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~ 124 (280)
T 1oyz_A 56 VRLAIEFCSDKNYIRRDIGAFILGQIKIC-K-----KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----I 124 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T-----TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----G
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccc-c-----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----c
Confidence 45677888999999999999888776421 1 11223444333 24568999999999999988764222 2
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
+.+-++..+..++.|-++.||..+...|.-+
T Consensus 125 ~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 125 YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 3445566667778899999999988877643
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.33 E-value=3.6 Score=49.51 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=85.5
Q ss_pred hhHHHHHHHhccCCc-hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh
Q psy16387 303 LSVKELMSRLRHNNS-AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL 381 (676)
Q Consensus 303 l~lk~lLs~l~h~n~-~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i 381 (676)
.-|..++..+++-+- .++.-||.-+..+....| ..+...+..|++-+...+.|.-+.|-+++++.+..++..+...+|
T Consensus 133 ~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 336677777755432 377788888888887777 456788899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHh------------hhhcccchhhccccHHHHHHHHHh
Q psy16387 382 APLFEIVVRYLA------------CAMSHLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 382 ~p~~~~l~~~i~------------~AMTHi~~~Ir~dsl~~Ld~ll~~ 417 (676)
.||+|.|+--|. +| |-.+.+|-.=+|.+|-=||++
T Consensus 212 ~~~~~~~~~~~~~p~~~~~~~~~l~~-~tfv~~v~~~~l~~~~p~l~r 258 (986)
T 2iw3_A 212 ERFIPSLIQCIADPTEVPETVHLLGA-TTFVAEVTPATLSIMVPLLSR 258 (986)
T ss_dssp GGGHHHHHHHHHCTTHHHHHHHHHTT-CCCCSCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcChhhhHHHHHHhhc-CeeEeeecchhHHHHHHHHHh
Confidence 999999764332 22 333445555556666655555
No 82
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=78.06 E-value=4.5 Score=45.99 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=77.1
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccH
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLF 385 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~ 385 (676)
-+.+..+.+.|...||=+-.++..+...+|. ++. -+++.+..=+.|.+..||..+++.|..|.. + .++
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e-~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~----e~~ 144 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSE-LIR----LINNAIKNDLASRNPTFMGLALHCIANVGS---R----EMA 144 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH-HHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H----HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCcH-HHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H----HHH
Confidence 4556667777788888888888888877763 222 234444445568888999998888887732 2 256
Q ss_pred HHHHHHHhhhh--cccchhhccccHHHHHHHHHhCCccch
Q psy16387 386 EIVVRYLACAM--SHLDAGVREDSLLIIDVLLEQCPILTA 423 (676)
Q Consensus 386 ~~l~~~i~~AM--THi~~~Ir~dsl~~Ld~ll~~~p~l~~ 423 (676)
+.++..|..++ +|-++-||.-|...+--+.+.+|.++.
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~ 184 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP 184 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC
Confidence 67788888888 888999988888888888888886544
No 83
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=77.20 E-value=12 Score=33.64 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=78.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
|.+.|+.| |. -++++..+...+-.|. .|...|++.+...+......-|-.++=|++.|+..........|
T Consensus 10 l~~~L~~L---~~--s~~sI~~~s~w~l~h~-----~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 10 LDRKFQSV---TN--TMESIQGLSSWCIENK-----KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHC---CS--SHHHHHHHHHHHHHTG-----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHC---cc--cHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 44455555 32 3688888888887664 46777888888888888888899999999988876655444556
Q ss_pred HHHHHHHHhhhhccc-chhhccccHHHHHHHHH--hCC
Q psy16387 385 FEIVVRYLACAMSHL-DAGVREDSLLIIDVLLE--QCP 419 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi-~~~Ir~dsl~~Ld~ll~--~~p 419 (676)
.+.+...+..++.|+ .++.|.--.++|+++-+ .||
T Consensus 80 ~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~ 117 (132)
T 4flb_A 80 RESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYP 117 (132)
T ss_dssp HHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCCcC
Confidence 777777788888887 66778777899999987 477
No 84
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=76.44 E-value=13 Score=37.51 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=88.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-++..++.-++.+|-.||.-|.++++..|...-..-+..++..++.+..+.+.-|---+++.|+.++..+|... --
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~--~~ 112 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS--KT 112 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH--HH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH--HH
Confidence 4567788899999999999999999999988655456788899999999999999999999999999998777321 11
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHh
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMI 436 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~ll 436 (676)
+..++-=+.+-++-=.+-.++.+...|+.| ....-..++.+-.+++|
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-----kv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-----QPLEDSKLVRTYINELV 159 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-----CBSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-----CcccchHHHHHHHHHHH
Confidence 222333233334444444555556666655 11222456777777777
No 85
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=74.32 E-value=1.9 Score=47.58 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=77.9
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
-|...+++.++.+|++|..-|..+...++.......-..+++.++.++.+.+..||+++...|..+...-+.+.+.-+.+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 34566789999999999999999887655321111123477788888899999999999999987765445554332211
Q ss_pred H-HHHHHhhhhcccchhhccccHHHHHHHHHhCCcc
Q psy16387 387 I-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL 421 (676)
Q Consensus 387 ~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l 421 (676)
. .+..+..-++.-.++|+.-+|..|.-+++..+.+
T Consensus 400 ~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~ 435 (510)
T 3ul1_B 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435 (510)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence 1 1122222344558899999999999999876643
No 86
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=74.09 E-value=10 Score=40.72 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=86.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh-hhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE-EELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~-~~i~p 383 (676)
+..++..+++.++..++.+...+-..++.+|...-..--...++.+.+++.|.+..||..+...|..+....+. +.+..
T Consensus 187 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 266 (529)
T 1jdh_A 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 266 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHh
Confidence 56677778888888888877776666666764211111124788889999999999999999999887653332 12233
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhcc
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMISS 438 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls~ 438 (676)
.++.++ ..+.+-++++|..+...|.-|-...|...... ...++..+.+|..
T Consensus 267 ~i~~L~----~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 267 LLGTLV----QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHH----HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHH----HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 344444 44567789999999999998876554322221 2356677777754
No 87
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=73.87 E-value=8.2 Score=43.52 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=85.1
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccC-ChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDI-SATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~-~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..|...+++-++.+|..|+.-|..+-...+..........+++.++.++.+. +..||.++...|..+.. ..+...-
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~--~~~~~~~ 93 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGLLA 93 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT--SHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--ChhhHHH
Confidence 56778888899999999999999998865542110111234667777777654 88999999999986643 2222111
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhccc
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISSQ 439 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~~ 439 (676)
++. -.+.-+...+.+-.+++|..|+..|.-|....+..... -...++-++.+|...
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 111 12223333345557899999999999998886643222 134666677777543
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=73.36 E-value=8.9 Score=45.15 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=72.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccc--cCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLML--DISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~--D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+.-+++.+++ +.+|..|..-|..+....+. .+..++..|++.+..++. +.+..+|..+++.+..++...+++...
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECKY-DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4455666644 78999999889988876664 467899999999988887 357899999999999988878778888
Q ss_pred ccHHHHHHHHhhhhcc
Q psy16387 383 PLFEIVVRYLACAMSH 398 (676)
Q Consensus 383 p~~~~l~~~i~~AMTH 398 (676)
|++..++..+...+..
T Consensus 608 ~~~~~l~~~l~~~l~~ 623 (963)
T 2x19_B 608 KNLHSLISPYIQQLEK 623 (963)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888777766644
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=73.25 E-value=15 Score=43.48 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhc-C---------CccchhhcHHHHHHhhhccccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITL-N---------PTSVIKSHFSSILDSVSPLMLD 356 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~-~---------P~~~~~~~~~~il~~~~~li~D 356 (676)
+..++..+.+-+..||..|..-|..++.. . +...+..++..|++.+..++..
T Consensus 498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 45566667776777999999999987762 1 1234677888888887777654
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=72.91 E-value=6.8 Score=41.68 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=85.1
Q ss_pred HHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHH
Q psy16387 307 ELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386 (676)
Q Consensus 307 ~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~ 386 (676)
+.+..+.+.+...||=...+++++... |.+++ . +++.+..=+.|.+.-+|..+++.|-.|.. + ..++
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~----~m~~ 138 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-I----VTSSLTKDMTGKEDSYRGPAVRALCQITD---S----TMLQ 138 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCC---T----TTHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCC---H----HHHH
Confidence 445578889999999999999987766 44443 3 34444445678999999999999988733 2 3577
Q ss_pred HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhh
Q psy16387 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRS 427 (676)
Q Consensus 387 ~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k 427 (676)
.+..|+..++.|-.|.||.-|+--.--|+...|+++..|..
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~ 179 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN 179 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 88999999999999999999999888888889987766543
No 91
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=72.11 E-value=6.1 Score=40.43 Aligned_cols=9 Identities=33% Similarity=1.180 Sum_probs=4.7
Q ss_pred cCCCCCCCc
Q psy16387 136 PCTTCDGKG 144 (676)
Q Consensus 136 ~C~~C~G~G 144 (676)
.|+.|.+.|
T Consensus 158 ~Cp~C~~~~ 166 (279)
T 1ltl_A 158 LCSECGGRS 166 (279)
T ss_dssp CCTTTCCCC
T ss_pred cCCCCCCCC
Confidence 455555544
No 92
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=72.10 E-value=17 Score=35.62 Aligned_cols=121 Identities=16% Similarity=0.272 Sum_probs=93.9
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccc-cCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLML-DISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~-D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
-+++++..|.+--=+|+++||.-+-.+...+|. + ..+++.++..++. |+.-+.-++.-+.|..+.. +.|+.++
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l----~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i~Pe~v~ 106 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-L----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVK 106 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-G----HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-H----HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-hCHHHHH
Confidence 367777777776667999999999999988883 3 4457777777755 5555566777777765544 7899999
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhc
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMIS 437 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls 437 (676)
+.+|.+.+-.+.| .+.||..=-..|.-++..+|.+.+ .+...++.|++
T Consensus 107 ~vVp~lfanyrig----d~kikIn~~yaLeeIaranP~l~~---~v~rdi~smlt 154 (253)
T 2db0_A 107 SMIPVLFANYRIG----DEKTKINVSYALEEIAKANPMLMA---SIVRDFMSMLS 154 (253)
T ss_dssp HHHHHHHHHSCCC----SHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHTS
T ss_pred hhHHHHHHHHhcC----CccceecHHHHHHHHHHhChHHHH---HHHHHHHHHhc
Confidence 9999999988888 888998888999999999996543 45566777777
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.06 E-value=6.1 Score=47.52 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=68.6
Q ss_pred HHHHHHHhhhcCCcc---chhhcHHHHHHhhhcccc---cCChHHHHHHHHHHHHHhccCChhhh--ccc-HHHHHHHHh
Q psy16387 323 GLSGLLEIITLNPTS---VIKSHFSSILDSVSPLML---DISATTRKAAVKLLSAMFSQVTEEEL--APL-FEIVVRYLA 393 (676)
Q Consensus 323 aL~gl~~ll~~~P~~---~~~~~~~~il~~~~~li~---D~~~~VR~~l~~ll~~l~~~~~~~~i--~p~-~~~l~~~i~ 393 (676)
+|.=+..++...+.. .++.-+..++..+.++|. |..++||+.++.||..++..++...+ .|- +..++-.+.
T Consensus 776 ~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~ 855 (1049)
T 3m1i_C 776 VLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAIC 855 (1049)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHH
Confidence 555455555444321 223333445555555564 56899999999999999988887665 333 566777888
Q ss_pred hhhcccchhhccccHHHHHHHHHhC
Q psy16387 394 CAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 394 ~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
.|++|-.+++...+++||.-|++..
T Consensus 856 ~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 856 WAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp HHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999873
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=70.77 E-value=10 Score=37.10 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh
Q psy16387 306 KELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373 (676)
Q Consensus 306 k~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~ 373 (676)
+|+++.+.+.|..-|--||+.+--+=.+|| .+..+-|+++..|+-|.+..||..++..|-.+.
T Consensus 147 rdi~smltskd~~Dkl~aLnFi~alGen~~-----~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 147 RDFMSMLSSKNREDKLTALNFIEAMGENSF-----KYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209 (253)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHTCCTTTH-----HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhccCc-----cccCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence 444555554444444444444433333332 233344555555555555555555555554443
No 95
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=70.72 E-value=6.1 Score=46.12 Aligned_cols=128 Identities=11% Similarity=0.084 Sum_probs=83.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccC-ChHHHHHHHHHHHHHhccCChhhhc-
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDI-SATTRKAAVKLLSAMFSQVTEEELA- 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~-~~~VR~~l~~ll~~l~~~~~~~~i~- 382 (676)
+..|...+.+-++.+|..|+.-|..+-...+..........+++.++.++.+. +..||.++...|..+.. . .+...
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~-~~~~~~ 229 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-H-REGLLA 229 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-S-HHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHH
Confidence 66777888888999999999999887643321111111234677777777644 89999999999987643 1 22111
Q ss_pred ----ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhcc
Q psy16387 383 ----PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMISS 438 (676)
Q Consensus 383 ----p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls~ 438 (676)
.-++.|+-. +.+-.+.||..|+..|--|....+...... ...++.++.+|..
T Consensus 230 i~~~g~I~~Lv~l----L~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~ 287 (780)
T 2z6g_A 230 IFKSGGIPALVNM----LGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287 (780)
T ss_dssp HHHTTHHHHHHHH----TTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHH----HcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence 223344444 444579999999999999998877543222 3466667777754
No 96
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=69.91 E-value=11 Score=40.57 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=84.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc-CChHHHHHHHHHHHHHhccCChhhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD-ISATTRKAAVKLLSAMFSQVTEEELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D-~~~~VR~~l~~ll~~l~~~~~~~~i~p 383 (676)
+..+...+++-++.+|..|+.-|..+-...+...........++.++.++.+ .+..+|..+...|..+.. .++....
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~--~~~~~~~ 96 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGLLA 96 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--CchhHHH
Confidence 5667788889999999999999998875433110001112456666666654 488999999999987643 2222211
Q ss_pred cHH-HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhcc
Q psy16387 384 LFE-IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISS 438 (676)
Q Consensus 384 ~~~-~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~ 438 (676)
++. -.+..+...+.+-.+++|..++..|.-|....+..... -...++.++.+|..
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence 111 12233333455567999999999999998887643322 23567777777765
No 97
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=66.00 E-value=18 Score=36.64 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=97.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
|.+++..+++-|.++--.|+.=|+-++...| +-+..+..++..+.-++.+.+..+|..+...|..+ .+...
T Consensus 77 Ld~iI~llk~~dEkval~A~r~L~~LLe~vp--L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-------kv~~~ 147 (265)
T 3b2a_A 77 LDVFINALSQENEKVTIKALRALGYLVKDVP--MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-------QPLED 147 (265)
T ss_dssp HHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-------CBSCC
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-------Ccccc
Confidence 5667777899999999999999999999998 45788999999999999999999999999999876 34456
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhhhhhhhHHHHHhccc
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQ 439 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~~k~l~~f~~lls~~ 439 (676)
.+.++-+|++=|+.=..+++.-++.+|--+.-+..+ ...|..++...-+||...
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D-~~i~~~I~~eI~elL~~e 201 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD-SGHLTLILDEIPSLLQND 201 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS-CCCGGGTTTTHHHHHTCS
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHHHHcCC
Confidence 778888899999777788888887765444333210 123556677777777655
No 98
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=65.84 E-value=15 Score=39.82 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=89.7
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh--h
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE--L 381 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~--i 381 (676)
++..+...|++.++.++.+|+..|+.+...++..-...--.-.++.++.++.+.+..|+.++...|..|...-++.. |
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46778899999999999999999999886665311112233467888888888999999999999988865212111 1
Q ss_pred --cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh-hhhhhhHHHHHh
Q psy16387 382 --APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLDMI 436 (676)
Q Consensus 382 --~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~ll 436 (676)
..-++.|+-.+.. +-.+++|+.+...|.-|-.. +..... ..-.++-++.+|
T Consensus 83 ~~~G~i~~Lv~lL~~---~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 83 RRQNGIREAVSLLRR---TGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRV 136 (457)
T ss_dssp HHTTCHHHHHHHHTT---CCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhh---CCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHH
Confidence 2234455555541 34689999999999888876 543221 116788888888
No 99
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=63.02 E-value=12 Score=40.46 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=81.3
Q ss_pred hccCC-chhhhh--HHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHH--HHhccCChhhhcccHH
Q psy16387 312 LRHNN-SAVKQD--GLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLS--AMFSQVTEEELAPLFE 386 (676)
Q Consensus 312 l~h~n-~~~Rkd--aL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~--~l~~~~~~~~i~p~~~ 386 (676)
++|+= .+..|+ -|..|.+++..-|..-....+..+...++..+....-.|-..++.+++ .++..+ .+..+..++
T Consensus 257 Lk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li-~~n~~~IlP 335 (403)
T 3fga_B 257 LKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-SDNAAKILP 335 (403)
T ss_dssp HHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-HTTHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH-HHhHHHHHH
Confidence 45543 224555 567788888655544445677789999999999999999999999984 444422 233445556
Q ss_pred HHHHHH-hhhhcccchhhccccHHHHHHHHHhCCccc
Q psy16387 387 IVVRYL-ACAMSHLDAGVREDSLLIIDVLLEQCPILT 422 (676)
Q Consensus 387 ~l~~~i-~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~ 422 (676)
++...+ +.|-+|-+..||.-+..+|.+|+|.-|.+.
T Consensus 336 ii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 336 IMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLF 372 (403)
T ss_dssp HHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHH
Confidence 666555 778999999999999999999999999663
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=62.52 E-value=29 Score=36.73 Aligned_cols=101 Identities=10% Similarity=0.090 Sum_probs=72.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
...+...+.|.|+-+|--||+-|-.+.. ++ -+..|...+...+.|.++-||++++-..-.+++ ..++.+..|
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~-~~pe~v~~~ 177 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITD---ST----MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLK-CSFDVVKRW 177 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC---TT----THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT-TCHHHHHTT
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCC---HH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc-cCHHHHHHH
Confidence 4556678899999999999999999873 23 345688888899999999999999888777777 455667666
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHh
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQ 417 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~ 417 (676)
++- +..+..--++-|+.-|+.+|--+-++
T Consensus 178 ~~~----l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 178 VNE----AQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHH----HHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHH----HHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 553 33444444555555566655555443
No 101
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=61.90 E-value=25 Score=40.84 Aligned_cols=130 Identities=12% Similarity=0.001 Sum_probs=80.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+..++..+++.++..++++...+-..|+..+..--..--..+++.++.++.|.+..++..+...|..+....+... .
T Consensus 320 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~ 396 (780)
T 2z6g_A 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---G 396 (780)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---C
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---h
Confidence 5566777777777777766555555565555311001112367888999999999999999999988875433211 1
Q ss_pred HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhc
Q psy16387 385 FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMIS 437 (676)
Q Consensus 385 ~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls 437 (676)
..-++..|...+.+-.++||..|...|.-|....+..... -...++.++.+|.
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 2334444445566788999999999998886654422111 1124455555554
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=61.23 E-value=8.7 Score=33.73 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=42.9
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHH
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLS 370 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~ 370 (676)
+..++..+++.++.||..|+..|-.+= .| ..++.+..++.|.+..||.++...|.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456677788999999999999988764 11 24566667778999999999988764
No 103
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=58.39 E-value=11 Score=41.44 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=79.4
Q ss_pred hccCCc-hhhhh--HHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHH--HHhccCChhhhcccHH
Q psy16387 312 LRHNNS-AVKQD--GLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLS--AMFSQVTEEELAPLFE 386 (676)
Q Consensus 312 l~h~n~-~~Rkd--aL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~--~l~~~~~~~~i~p~~~ 386 (676)
++|+=- +..|+ -|..|.+++..-+..-....+..+...++..+....-.|-..++.+++ .++..+ .+...-.++
T Consensus 290 Lk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li-~~n~~~IlP 368 (449)
T 2npp_B 290 LKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-SDNAAKILP 368 (449)
T ss_dssp HHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-HTTHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH-HhchhhhHH
Confidence 455432 24454 567788888655544445677889999999999999999999999984 444322 223333455
Q ss_pred HHHHHH-hhhhcccchhhccccHHHHHHHHHhCCcc
Q psy16387 387 IVVRYL-ACAMSHLDAGVREDSLLIIDVLLEQCPIL 421 (676)
Q Consensus 387 ~l~~~i-~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l 421 (676)
++...+ ++|-+|-+..||.-|..+|.+|++.-|.+
T Consensus 369 ii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 369 IMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp HHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHH
Confidence 555555 78899999999999999999999999954
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=57.67 E-value=22 Score=40.71 Aligned_cols=118 Identities=20% Similarity=0.217 Sum_probs=83.6
Q ss_pred hhhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHH--HHHHhhhcccccCChHHHHHHHHHHHHHhccCCh
Q psy16387 301 RKLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFS--SILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE 378 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~--~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~ 378 (676)
+.-++.-|++.+..++..+|.-|++-|+-++..+|..+-..-+. .=++.++.++.|....||.+.+-||..|...-+.
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 44557788999999999999999999999999998533222222 3577788899999999999999999988763221
Q ss_pred -hhhccc---HHHHHHHH-hhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 379 -EELAPL---FEIVVRYL-ACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 379 -~~i~p~---~~~l~~~i-~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
+.+.-| |+.+..=| .-+.. -..-|-+|.|.+|.-||++-|
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~~-~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGNS-DGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTGG-GSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHHhcCH
Confidence 112222 33333222 22332 244678999999999999865
No 105
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=57.48 E-value=21 Score=37.73 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=77.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc----chhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh--
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS----VIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE-- 378 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~----~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~-- 378 (676)
..+++.+|...+...+++||..|+.++...+.- +....+.. ++.++.+.+...-.-.+..|..+..-+.-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~----Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSC----LIRVGAAADHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHH----HHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHH----HHHHHHhcChHHHHHHHHHHHHHHhcccccc
Confidence 467788888888899999999999999765531 22233444 44455666999999999988877652110
Q ss_pred hhh--cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 379 EEL--APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 379 ~~i--~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..+ ..|+..+..++.+ ....|-.-||++|.+++++.+.
T Consensus 196 gvvs~~~fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~ 235 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSEN 235 (339)
T ss_dssp HHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGG
T ss_pred chhCCHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcc
Confidence 122 2366777788874 5688899999999999999873
No 106
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=55.44 E-value=22 Score=42.98 Aligned_cols=80 Identities=6% Similarity=0.123 Sum_probs=68.5
Q ss_pred hcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh-------hcccHHHHHHHHhhhhcccchhhccccHHHHHH
Q psy16387 341 SHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE-------LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDV 413 (676)
Q Consensus 341 ~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~-------i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ 413 (676)
..+.++|+.+.+.+.|..+.|..++-..|..|...+.... +.||++.++..+..+...+.+.=+.-...-+..
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688899999999999999999999999988887766544 379999999988888888888888888888999
Q ss_pred HHHhCCc
Q psy16387 414 LLEQCPI 420 (676)
Q Consensus 414 ll~~~p~ 420 (676)
+++..|.
T Consensus 616 vi~~~~~ 622 (1023)
T 4hat_C 616 IISEERS 622 (1023)
T ss_dssp HHTTCCS
T ss_pred HHHhCCC
Confidence 9999884
No 107
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=54.68 E-value=18 Score=42.78 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhccccc--CChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLD--ISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D--~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+.-+++.+ + +.++..|..-+.++...-+ ..+..++..|++.+..++.. .+..++..+++.+-.++..++++...
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44555566 3 7788888888888886655 34678899999999888876 57899999999999888888888888
Q ss_pred ccHHHHHHHHhhhhcc
Q psy16387 383 PLFEIVVRYLACAMSH 398 (676)
Q Consensus 383 p~~~~l~~~i~~AMTH 398 (676)
|++..++..+...+..
T Consensus 624 ~~~~~ll~~l~~~l~~ 639 (971)
T 2x1g_F 624 KYLDIIVSPCFEELQA 639 (971)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888776666655543
No 108
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=54.23 E-value=50 Score=37.01 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=78.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh-hhhcc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE-EELAP 383 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~-~~i~p 383 (676)
+.-|+..+++.+....+++...+-..++.+|..--...-..+++.+++++.+.+..||..++.+|..+....+. +.+..
T Consensus 184 v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 263 (644)
T 2z6h_A 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 263 (644)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHH
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhh
Confidence 55677777776654444444444344445553210011123688889999999999999999999888653322 22333
Q ss_pred cHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh--hhhhhhHHHHHhcc
Q psy16387 384 LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN--YRSLLPHFLDMISS 438 (676)
Q Consensus 384 ~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~--~~k~l~~f~~lls~ 438 (676)
.++. +...+.+-.++||.++...|.-|-...+..... -...++..+.+|..
T Consensus 264 ~i~~----Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 264 LLGT----LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHH----HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHH----HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444 444455778999999999998887654432111 12355666666654
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=54.07 E-value=61 Score=32.70 Aligned_cols=109 Identities=13% Similarity=0.254 Sum_probs=71.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhc-------cCC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS-------QVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~-------~~~ 377 (676)
+.++|+...+.+..+||-....+.|....+| .++..++..+.-++.|.+..|-+.++.....+.+ ..+
T Consensus 55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 55 LESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667776566777799999999999998887 3566677788888889999998877664433322 111
Q ss_pred h-----hhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 378 E-----EELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 378 ~-----~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
. +..=-.+..+=.+|.+=+-+-..+||.-++||+.-++..+
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 1 1111122223334444455567888888888888776543
No 110
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=51.72 E-value=21 Score=42.80 Aligned_cols=95 Identities=11% Similarity=0.172 Sum_probs=72.3
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccch-------hhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVI-------KSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~-------~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+..++..+.+-|..+|..|..-|..+....+..+. ..++..|++.+..++.+.+..-+..+++.+..++...+
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 44566677777889999998888888866553322 37899999999999988888778888888888888777
Q ss_pred -hhhhcccHHHHHHHHhhhhccc
Q psy16387 378 -EEELAPLFEIVVRYLACAMSHL 399 (676)
Q Consensus 378 -~~~i~p~~~~l~~~i~~AMTHi 399 (676)
++...+++..++..+..+...+
T Consensus 622 ~~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 622 SVAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp SHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888777766555444
No 111
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=49.83 E-value=35 Score=36.91 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=20.5
Q ss_pred CcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 210 GGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 210 G~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
.+.+.||-|+ +.||| |++.|..=.|.|
T Consensus 294 ta~i~IPEL~----lei~p----g~~~G~~TTVEG 320 (404)
T 2qkd_A 294 TCSVEIPELE----FELGM----AVLGGKFTTLEG 320 (404)
T ss_dssp TCEEEEGGGT----EEECT----TTTCSEEEEHHH
T ss_pred ceEEEeeeee----EEecC----CCCCceEEeHHH
Confidence 3678888773 78899 888777777765
No 112
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.10 E-value=24 Score=42.36 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=49.5
Q ss_pred ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChh---hhcccHHHHH
Q psy16387 313 RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEE---ELAPLFEIVV 389 (676)
Q Consensus 313 ~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~---~i~p~~~~l~ 389 (676)
.++|+.+|+-|..-|=-+-..+|. ..++.-+.++..|.+..||++++..|..|+...+.. .++.+...+.
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 356666666665555444444442 246777778888999999999999998888766655 5666666655
Q ss_pred HHH
Q psy16387 390 RYL 392 (676)
Q Consensus 390 ~~i 392 (676)
.|+
T Consensus 695 ~~~ 697 (963)
T 4ady_A 695 SVI 697 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 113
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=48.99 E-value=23 Score=41.75 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=83.0
Q ss_pred HHHHHHHhccCCc-hhhhhHHHHHHHhhhcCCccchhhcH-HHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNS-AVKQDGLSGLLEIITLNPTSVIKSHF-SSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~-~~RkdaL~gl~~ll~~~P~~~~~~~~-~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+.-|+..|.+-+. -.+.+|+.-|..+.+..+. ....-. .-.++.+..++.+.+..||+++..+|..|.. .++.+.
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~ 658 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIK 658 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHH
Confidence 5666777764323 3456899999988865432 111101 1257788888899999999999999988765 333433
Q ss_pred ccHH--HHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh---hhhhhHHHHHhcc
Q psy16387 383 PLFE--IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY---RSLLPHFLDMISS 438 (676)
Q Consensus 383 p~~~--~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~---~k~l~~f~~lls~ 438 (676)
.|.. -.+-++..-+.+-..+||..|...|.-|-...|...... ...++-.+.||..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 3331 112222223445678999999999999988777433221 3466667777764
No 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=48.38 E-value=19 Score=40.82 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHh-----------
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF----------- 373 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~----------- 373 (676)
|..++..+.+..=.+|.-+|.|||=+ .+++.. +..+++.+...+.|.|.+||..+...|--+.
T Consensus 265 L~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~i 338 (800)
T 3oc3_A 265 IEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEK 338 (800)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHH
T ss_pred HHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444666667999999999977 234444 8889999999999999999998765543222
Q ss_pred -----ccCChhhhcccHHHHHHHHh--------------------hhhcccchhhccccHHHHH
Q psy16387 374 -----SQVTEEELAPLFEIVVRYLA--------------------CAMSHLDAGVREDSLLIID 412 (676)
Q Consensus 374 -----~~~~~~~i~p~~~~l~~~i~--------------------~AMTHi~~~Ir~dsl~~Ld 412 (676)
... +++++-...+|--+. -=++|..++||...|+.|.
T Consensus 339 LWd~L~~L--DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~ 400 (800)
T 3oc3_A 339 CWKNIESE--ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVK 400 (800)
T ss_dssp HHHHHHTC--CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTT
T ss_pred HHHHhhhh--cccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHH
Confidence 111 344444443333222 2378999999997776553
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=48.37 E-value=27 Score=35.04 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhccc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPL 384 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~ 384 (676)
+.-+...++|-|..+|+-|..+++- .+..|. .......+++-+.++..|.+.-||+++-.-|+.+.. ..|+.+..|
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK-~~Pd~V~~~ 216 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRI-WTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK-KFPDLVKIE 216 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCS-GGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHH-Hhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-hCHHHHHHH
Confidence 4556777899999999999999874 444453 356777899999999999999999999999998766 455555444
Q ss_pred H
Q psy16387 385 F 385 (676)
Q Consensus 385 ~ 385 (676)
+
T Consensus 217 ~ 217 (240)
T 3l9t_A 217 L 217 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 116
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=48.17 E-value=32 Score=37.66 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=78.6
Q ss_pred HHHHHHHhccCCch----hhhhHHHHHHHhhh---cCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRHNNSA----VKQDGLSGLLEIIT---LNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~----~RkdaL~gl~~ll~---~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+.-|...+++.++. ++++|..-|..+-. .+|...-...-...++.++.++.+.+..|++.+...|..+.. -.
T Consensus 332 l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-~~ 410 (458)
T 3nmz_A 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RN 410 (458)
T ss_dssp HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS-SC
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc-CC
Confidence 55667777776654 78887766665543 455321111112367888889999999999999999988763 24
Q ss_pred hhhhcccHHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 378 EEELAPLFEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 378 ~~~i~p~~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
++......+. .+..+..-|..-.+.||+.|...|.-|+.+-|
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 5555444433 45566666777789999999999999998877
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=47.92 E-value=38 Score=35.43 Aligned_cols=137 Identities=19% Similarity=0.259 Sum_probs=87.6
Q ss_pred HHHHHHH-hccCCch---hh-hhHHHHHHHhhhcCCc---cchhhcHHHHHHhhhccccc---CChHHHHHHHHHHHHHh
Q psy16387 305 VKELMSR-LRHNNSA---VK-QDGLSGLLEIITLNPT---SVIKSHFSSILDSVSPLMLD---ISATTRKAAVKLLSAMF 373 (676)
Q Consensus 305 lk~lLs~-l~h~n~~---~R-kdaL~gl~~ll~~~P~---~~~~~~~~~il~~~~~li~D---~~~~VR~~l~~ll~~l~ 373 (676)
+..++.. |.+|+.+ .| -|.|.-+..++.+-.. ..++.-+..+.+..+.+|.+ +-++.|.++++||+++.
T Consensus 71 ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~ 150 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVN 150 (321)
T ss_dssp HHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 3444433 4555533 33 3455555555544332 12334455555566778884 67999999999999887
Q ss_pred ccCChhhhc---ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc---cc-----hhhhhhhhHHHHHhccccc
Q psy16387 374 SQVTEEELA---PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI---LT-----ANYRSLLPHFLDMISSQTR 441 (676)
Q Consensus 374 ~~~~~~~i~---p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~---l~-----~~~~k~l~~f~~lls~~~~ 441 (676)
..+-+..+. ..+.+++=.|.-|.-|-..+|-+-+|++|.-|++.+.. .. .++..||..-+.+|--..+
T Consensus 151 ~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 151 SHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 655555443 23455555666799999999999999999999998752 21 1234577776666654443
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=44.76 E-value=25 Score=38.93 Aligned_cols=102 Identities=14% Similarity=0.262 Sum_probs=75.9
Q ss_pred hhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 303 l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
..+.-++..+-+-...+|+.|+.+|=.+... .+++.|..-++-|+.-+|...+.+.-+.|-.++..-|...+.
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~ 137 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG-------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG 137 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHH
Confidence 3467789999999999999999998777743 345566666666777777777777777766666667777787
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCC
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP 419 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p 419 (676)
..|..+.. + .+.+|+..|+||..=+.-.|
T Consensus 138 ~lf~~i~~----~----~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 138 GLFSQILQ----G----EDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp HHHHHHHH----S----CHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHcc----c----chHHHHHHHHHHHHHHhhcc
Confidence 77776655 2 68999999999976666655
No 119
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=42.95 E-value=3.7 Score=47.31 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=32.8
Q ss_pred CcceeccccCceeEEEEeeCC-ceeeEeCCCCCCcceE---------------------ecccCCCCCCCce
Q psy16387 96 TKAQKCHYCNGTGLETISTGP-FVMRSTCRYCKGSRNL---------------------IKNPCTTCDGKGQ 145 (676)
Q Consensus 96 ~~~~~C~~C~G~G~~~~~~G~-~~~~~~C~~C~G~G~~---------------------i~~~C~~C~G~G~ 145 (676)
.....|..|+|+|.. .|. .....+|+.|+|.... -...|..|+..+.
T Consensus 189 ~~~~~C~tCHGsGA~---~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 189 VSIDTCNSCHSNLAF---HGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp CCSHHHHHHHSSCCT---TTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred ccCCcCCCCCCCCCc---CCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 457789999999962 122 2256799999999311 1257999998763
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=42.36 E-value=85 Score=33.65 Aligned_cols=108 Identities=11% Similarity=0.133 Sum_probs=73.5
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHH--------HHHhccC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLL--------SAMFSQV 376 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll--------~~l~~~~ 376 (676)
|.++++....-+..+||-....|.|....++ .++..++..+.-|+.|.+..|-+.++... +.+.. -
T Consensus 65 l~~il~f~~d~~~~vRk~~a~FieEa~~~~~-----el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~-~ 138 (386)
T 3o2t_A 65 LDEIIAFQADKSIEVRKFVIGFIEEACKRDI-----ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK-S 138 (386)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 5666666666788899999999999998776 34567777888888899999988765543 33332 1
Q ss_pred Ch-----hhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhC
Q psy16387 377 TE-----EELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQC 418 (676)
Q Consensus 377 ~~-----~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~ 418 (676)
+. +..=-.+..+--.|.+-.-+-...||.-++||+.-++..+
T Consensus 139 ~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 139 RVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 21 1111223334445555566668899999999998887654
No 121
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=42.13 E-value=69 Score=36.68 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred HHHHHHHhcc-CCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChh----
Q psy16387 305 VKELMSRLRH-NNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEE---- 379 (676)
Q Consensus 305 lk~lLs~l~h-~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~---- 379 (676)
+.-|..++.+ --..-||+|+.+||++-..||..+-..-+..++..+..=- ++...||. .+..|-.++...+.+
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~-~D~e~v~~-~LetL~~l~~~~~~~~~~~ 100 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR-SDSEIIGY-ALDTLYNIISNDEEEEVEE 100 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT-TCHHHHHH-HHHHHHHHHCCC-------
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc-ccHHHHHH-HHHHHHHHhCCCCcccccc
Confidence 4556677754 2233699999999999999997654445666666554432 33344554 455554344422211
Q ss_pred -------hhcc-cHHHH------HHHHhhhhcccchhhccccHHHHHHHHHhCCccchh----hhhhhhHHHHHhcccc
Q psy16387 380 -------ELAP-LFEIV------VRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN----YRSLLPHFLDMISSQT 440 (676)
Q Consensus 380 -------~i~p-~~~~l------~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~----~~k~l~~f~~lls~~~ 440 (676)
.+.. |.+.+ +.=+..-+..-+-.+|..|+.+|..|+..-|..... -..-++..+++|+-.+
T Consensus 101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r 179 (651)
T 3grl_A 101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179 (651)
T ss_dssp -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS
T ss_pred cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch
Confidence 1222 11222 111222345667899999999999999998853221 1134555667776443
No 122
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=41.56 E-value=37 Score=35.63 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=75.7
Q ss_pred HHHHHHHhccCCch----hhhhHHHHHHHhhh---cCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRHNNSA----VKQDGLSGLLEIIT---LNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~----~RkdaL~gl~~ll~---~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+.-|...+++.++. ++++|..-|..+-. .+|...-..--...++.++.++.+.+..|++.+...|..+.. -.
T Consensus 216 i~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~ 294 (354)
T 3nmw_A 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RN 294 (354)
T ss_dssp HHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-SC
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC-CC
Confidence 56677777776653 78877666655443 344311000112357888888889999999999999988853 23
Q ss_pred hhhhcccHHH-HHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 378 EEELAPLFEI-VVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 378 ~~~i~p~~~~-l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
++......+. .+..+..-+..-.+.||+.|...|.-|...-|.
T Consensus 295 ~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 295 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4444333322 344444555666889999999999999998774
No 123
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=40.78 E-value=56 Score=35.27 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=20.3
Q ss_pred CcEEEeeecCCeEEEEecCCCCcccCCCcEEEEcC
Q psy16387 210 GGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTG 244 (676)
Q Consensus 210 G~~i~v~tldG~~~v~Ip~~~~~gt~~g~~lrl~G 244 (676)
.+++.||-|+ +.||| +++.|..=.|.|
T Consensus 86 tati~IPEL~----~eI~p----g~~~G~iTTVEG 112 (404)
T 2qkd_A 86 SATTRIPELD----FEIPA----FSQKGALTTVEG 112 (404)
T ss_dssp TCEEEEGGGT----EEECT----TSSCCEEEEHHH
T ss_pred CcEEEeeeee----EEecC----ccCCceEEeHHH
Confidence 3678888773 78899 887777777765
No 124
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.95 E-value=73 Score=34.19 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=64.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCCh------HHHHHHHHHHHHHhccCCh
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISA------TTRKAAVKLLSAMFSQVTE 378 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~------~VR~~l~~ll~~l~~~~~~ 378 (676)
+.-+...+.+-++.+|++|+.-|..+- .++. .....-...++.++.++...+. .|-.+++..|..++..-+.
T Consensus 333 l~~Lv~LL~~~~~~v~~~A~~aL~nls-~~~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~ 410 (457)
T 1xm9_A 333 LPQIARLLQSGNSDVVRSGASLLSNMS-RHPL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410 (457)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHH-TSGG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred chHHHHHHhCCCHhHHHHHHHHHHHHh-cCHH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 567788889999999999998888774 4553 2222223467777777776643 5777777777776653332
Q ss_pred hhhcccHHHHHHHHhhhhccc-chhhccccHHHHHHH
Q psy16387 379 EELAPLFEIVVRYLACAMSHL-DAGVREDSLLIIDVL 414 (676)
Q Consensus 379 ~~i~p~~~~l~~~i~~AMTHi-~~~Ir~dsl~~Ld~l 414 (676)
....-.-.-.+-.|..=+.|- .++|++.|..+|.-+
T Consensus 411 ~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 111111011222222223344 677777777766543
No 125
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=39.46 E-value=50 Score=40.15 Aligned_cols=116 Identities=7% Similarity=0.144 Sum_probs=79.6
Q ss_pred HHHHHHHhccCCchhhhhHHHH-HHHhhhcCCcc--chhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhh-
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSG-LLEIITLNPTS--VIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEE- 380 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~g-l~~ll~~~P~~--~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~- 380 (676)
++.+++...|-..+--|-.++. +-=.+.+||.- -.+..+.++++.+...+.|.++.|..++-..|..|...++...
T Consensus 523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv 602 (1073)
T 3gjx_A 523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV 602 (1073)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGT
T ss_pred HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666655433222222222 11255565531 1235678899999999999999999999999999988887654
Q ss_pred ------hcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 381 ------LAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 381 ------i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..||++.++-++.++..++.++=..-=.+-+..++...|.
T Consensus 603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 4589999998888888888776555555556677777774
No 126
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=36.02 E-value=52 Score=32.59 Aligned_cols=111 Identities=7% Similarity=0.004 Sum_probs=71.2
Q ss_pred hhhhHHHHHHHhccCCc--hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh
Q psy16387 301 RKLSVKELMSRLRHNNS--AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE 378 (676)
Q Consensus 301 r~l~lk~lLs~l~h~n~--~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~ 378 (676)
-..++..+...|++-++ .++..|...|+.+-..+|..-...--.-.|+.++.++...+..|+.++...|..|...-+.
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 34677888999988887 7888999999887766653211111123468888888889999999999999887542221
Q ss_pred hh--h--cccHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 379 EE--L--APLFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 379 ~~--i--~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
.. | ..-++.|+-.+++ +-..++|+.+...|--|
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~---~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQ---TRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 11 1 1233444444432 23567777777655544
No 127
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=35.88 E-value=50 Score=34.60 Aligned_cols=73 Identities=10% Similarity=0.143 Sum_probs=55.9
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
+..|+..+++.+..++++|+.-|..+-..+|...-..--.-.++.+..|+.+.+..+|+.+...|..|+..-|
T Consensus 265 i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 6788899999999999999999999876555321111112357788888889999999999999998876433
No 128
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=35.86 E-value=1e+02 Score=30.80 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=16.8
Q ss_pred eeeEEEE-----EeCCCCcCCc-EEEEcc----ccCCccEEEE
Q psy16387 148 QRQTITV-----PVPAGVEDGQ-TVRMNV----GKSKKEIYIT 180 (676)
Q Consensus 148 ~~~~l~V-----~IP~Gv~~G~-~irl~g----G~~~GDL~v~ 180 (676)
...+++| .+|+|-.+.. .+.+.+ .-.|||-+.+
T Consensus 191 D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~v 233 (268)
T 2vl6_A 191 DWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKV 233 (268)
T ss_dssp EEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEE
T ss_pred eeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEE
Confidence 3345555 3455544432 333443 3468887763
No 129
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=35.39 E-value=3.1e+02 Score=26.41 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=72.6
Q ss_pred hhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhh-
Q psy16387 318 AVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAM- 396 (676)
Q Consensus 318 ~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AM- 396 (676)
..|++||..|++--.-|| ++|--..=|.+++..-+. +-.+=..++++.++++. =|.=.+.|++..++.=+-+-+
T Consensus 23 ~~r~~aL~sL~~D~gL~~--LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~-N~~l~lepYlH~LipsvLtCll 97 (196)
T 4atg_A 23 DMKDIAIECLEKESGLQQ--LVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIK-NKHVFIDPYLHQILPSLLTCVI 97 (196)
T ss_dssp TTHHHHHHHHHHCSSCTT--THHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH-CTTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhh--hHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHH
Confidence 569999999988877776 333333345555555554 55666777888888876 344568888877665432222
Q ss_pred c-ccch-hhccccHHHHHHHHHhCCccchh-hhhhhhHHHHHh
Q psy16387 397 S-HLDA-GVREDSLLIIDVLLEQCPILTAN-YRSLLPHFLDMI 436 (676)
Q Consensus 397 T-Hi~~-~Ir~dsl~~Ld~ll~~~p~l~~~-~~k~l~~f~~ll 436 (676)
+ ++.+ ++|..|-++|..+...|...-.. -.++++.+...+
T Consensus 98 ~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l 140 (196)
T 4atg_A 98 GKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVW 140 (196)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHH
Confidence 1 2223 69999999999999998753222 345555555433
No 130
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=34.91 E-value=13 Score=32.08 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=0.0
Q ss_pred CCCCCChhhHhHhhhCC
Q psy16387 19 FHSTIDPEELFRNIFGQ 35 (676)
Q Consensus 19 f~~g~d~~diF~~fFGg 35 (676)
|++++++.|+|+.|||+
T Consensus 83 ~~~~~~~~~~f~~~f~~ 99 (103)
T 1bq0_A 83 FGGGADFSDIFGDVFGD 99 (103)
T ss_dssp -----------------
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 33344677888888864
No 131
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=32.76 E-value=48 Score=40.01 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=71.6
Q ss_pred HHHHHHhhhccccc---CChHHHHHHHHHHHHHhccCChhhhcc---cHHHHHHHHhhhhcccchhhccccHHHHHHHHH
Q psy16387 343 FSSILDSVSPLMLD---ISATTRKAAVKLLSAMFSQVTEEELAP---LFEIVVRYLACAMSHLDAGVREDSLLIIDVLLE 416 (676)
Q Consensus 343 ~~~il~~~~~li~D---~~~~VR~~l~~ll~~l~~~~~~~~i~p---~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~ 416 (676)
+..+.+....+|.+ .-++.|..+++||+.+...++...+.. .+..++=.+.-|..|-..+|-..+|++|--|++
T Consensus 799 l~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~ 878 (1023)
T 4hat_C 799 LQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1023)
T ss_dssp HHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 33344445566765 578999999999999988777766652 456677778889999999999999999999998
Q ss_pred hCCc-----cc-----hhhhhhhhHHHHHhcccccc
Q psy16387 417 QCPI-----LT-----ANYRSLLPHFLDMISSQTRS 442 (676)
Q Consensus 417 ~~p~-----l~-----~~~~k~l~~f~~lls~~~~~ 442 (676)
.+.. .. .++..++..-+.+|--..+.
T Consensus 879 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~ 914 (1023)
T 4hat_C 879 NIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHK 914 (1023)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCG
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 6542 11 22345666666666544443
No 132
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=32.28 E-value=3.2e+02 Score=32.77 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=91.7
Q ss_pred HHHHHHHh-ccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhc-ccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRL-RHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSP-LMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l-~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~-li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
++.||..+ .|-++.+|+-|..+|--+....|. .+..+.. +.-+.+..||.++--.|-.+...-+...+
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~a- 648 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSA- 648 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHH-
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHH-
Confidence 55677776 466778999999999988877763 2333444 33478999999999998877543342111
Q ss_pred ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCcc-chhhhhhhhHHHHHhcccc---------------cccccc
Q psy16387 383 PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMISSQT---------------RSHEQA 446 (676)
Q Consensus 383 p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l-~~~~~k~l~~f~~lls~~~---------------~~~~~~ 446 (676)
+++|. -.++.-+.+||.-|+.-|..+..--... ...-..++..+...++..+ ..- -+
T Consensus 649 --id~L~----~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a-G~ 721 (963)
T 4ady_A 649 --IDVLD----PLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA-GG 721 (963)
T ss_dssp --HHHHH----HHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT-GG
T ss_pred --HHHHH----HHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc-CC
Confidence 12222 2245689999999999999988665532 1223445555555555322 111 26
Q ss_pred eeeEEec-CC--CcchhHHHHHHHH
Q psy16387 447 RQLTVDL-DS--RTTTTVFRIKVLT 468 (676)
Q Consensus 447 ~~ltv~~-~~--~~~~~~~R~kvL~ 468 (676)
|.+|+++ ++ +..+..+-...|.
T Consensus 722 ~n~tis~~~s~~~~~~~~a~~Gl~~ 746 (963)
T 4ady_A 722 RNVTIQLENADTGTLDTKSVVGLVM 746 (963)
T ss_dssp GTEEECSBCTTTCCBCHHHHHHHHH
T ss_pred CceEEEeeeccCCCCCHHHHHHHHH
Confidence 7889988 33 3345555544444
No 133
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=30.66 E-value=22 Score=42.05 Aligned_cols=13 Identities=31% Similarity=0.963 Sum_probs=7.6
Q ss_pred eccccCceeEEEE
Q psy16387 100 KCHYCNGTGLETI 112 (676)
Q Consensus 100 ~C~~C~G~G~~~~ 112 (676)
.|+.|.|.|.+..
T Consensus 640 ~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 640 RCEHCQGEGWVMV 652 (842)
T ss_dssp BCTTTTTCSEEEE
T ss_pred ccccccCCCccch
Confidence 3666666665543
No 134
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=28.64 E-value=29 Score=41.64 Aligned_cols=15 Identities=33% Similarity=0.935 Sum_probs=8.9
Q ss_pred eccccCceeEEEEee
Q psy16387 100 KCHYCNGTGLETIST 114 (676)
Q Consensus 100 ~C~~C~G~G~~~~~~ 114 (676)
.|++|.|.|.+...+
T Consensus 755 rC~~C~g~G~i~~em 769 (972)
T 2r6f_A 755 RCEACHGDGIIKIEM 769 (972)
T ss_dssp BCTTTTTCSEEEECC
T ss_pred cccccccccceeeeh
Confidence 466666666654433
No 135
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=27.39 E-value=79 Score=34.46 Aligned_cols=72 Identities=10% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQV 376 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~ 376 (676)
+..|+..+++.+..++++|+.-|..+-..+|...-..--.-.++.+..++...+..||+.+...|..|+..-
T Consensus 381 i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 667888999999999999999999987666642111111235777888888899999999999999887643
No 136
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=27.06 E-value=5.1 Score=44.80 Aligned_cols=62 Identities=21% Similarity=0.519 Sum_probs=39.5
Q ss_pred ecCCCCCCCcCCC----CcceeccccCceeEEEEe-e---CCc---eeeEeCCCCCCcceEecccCCCCCCCc
Q psy16387 83 TCTRCHGEKCEPG----TKAQKCHYCNGTGLETIS-T---GPF---VMRSTCRYCKGSRNLIKNPCTTCDGKG 144 (676)
Q Consensus 83 ~C~~C~GtG~~~g----~~~~~C~~C~G~G~~~~~-~---G~~---~~~~~C~~C~G~G~~i~~~C~~C~G~G 144 (676)
.|..|||.+.... .....|-.||+....... . -|- .-...|..|+..-..-...|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 6999999865321 134579999986321100 0 010 125689999987666668899999653
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=25.60 E-value=2.8e+02 Score=25.63 Aligned_cols=69 Identities=13% Similarity=0.000 Sum_probs=42.1
Q ss_pred hhhcccccCChHHHHHHHHHHHHHhccCChhhh-----cccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 349 SVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL-----APLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 349 ~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i-----~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
.+...|...+..|.-.++.||..+...+...-. +-|.+-++--+ ..-+| +.||+-.+.++.-+-+.|+.
T Consensus 56 al~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~-~~~~~--~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 56 AIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI-KNKAH--PKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHH-HTTCC--HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH-ccCCC--HHHHHHHHHHHHHHHHHhcC
Confidence 333334444566666777888877776664322 33555444323 23344 68999888888888887774
No 138
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=25.28 E-value=4.1e+02 Score=29.38 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=86.5
Q ss_pred hhhHHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcHH-HHHHhhhcccccCChHH-------------------
Q psy16387 302 KLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFS-SILDSVSPLMLDISATT------------------- 361 (676)
Q Consensus 302 ~l~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~-~il~~~~~li~D~~~~V------------------- 361 (676)
+-+|..+++++..-.+.+|-.+|.-|.+-+..-|.+++..-+- -|+..+-.++-|....=
T Consensus 133 k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g 212 (507)
T 3u0r_A 133 KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSG 212 (507)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchH
Confidence 4567888889877788999999999999997766655443222 24444444445554433
Q ss_pred HHHHHHHHHHHhcc---CChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHh-CCcc---chh-----h-hhh
Q psy16387 362 RKAAVKLLSAMFSQ---VTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQ-CPIL---TAN-----Y-RSL 428 (676)
Q Consensus 362 R~~l~~ll~~l~~~---~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~-~p~l---~~~-----~-~k~ 428 (676)
|++|+.++...+.. .++.+. -+++.++..+..|+--.+..++ |.+|+..+.++ .|.+ ... + ..+
T Consensus 213 ~qeLv~ii~eQa~L~~~f~~sD~-e~vdRlI~C~~~ALP~FS~~v~--StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~L 289 (507)
T 3u0r_A 213 RQQLVELVAEQADLEQTFNPSDP-DCVDRLLQCTRQAVPLFSKNVH--STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEV 289 (507)
T ss_dssp HHHHHHHHHHHHTTTSCCCSSCH-HHHHHHHHHHHHHGGGCBTTBC--CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcCH-HHHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHhhccchhhccccccchHHHHHH
Confidence 56666666544221 111111 1567788888888888887766 78888888877 4532 221 2 357
Q ss_pred hhHHHHHhcccc
Q psy16387 429 LPHFLDMISSQT 440 (676)
Q Consensus 429 l~~f~~lls~~~ 440 (676)
|+.|.+|.....
T Consensus 290 LK~lAE~s~~~~ 301 (507)
T 3u0r_A 290 LKLLAEMSSFCG 301 (507)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHccCCC
Confidence 777777766655
No 139
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=23.10 E-value=2.3e+02 Score=34.41 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=73.1
Q ss_pred hcHHHHHHhhhcccc---cCChHHHHHHHHHHHHHhccCChhhhc---ccHHHHHHHHhhhhcccchhhccccHHHHHHH
Q psy16387 341 SHFSSILDSVSPLML---DISATTRKAAVKLLSAMFSQVTEEELA---PLFEIVVRYLACAMSHLDAGVREDSLLIIDVL 414 (676)
Q Consensus 341 ~~~~~il~~~~~li~---D~~~~VR~~l~~ll~~l~~~~~~~~i~---p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~l 414 (676)
.-+..+.+....+|. +.-++.|..+++||+.+...+....+. ..|.+++=.+.-|+.|-..+|-..+|++|--|
T Consensus 823 ~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~l 902 (1073)
T 3gjx_A 823 QIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 902 (1073)
T ss_dssp HHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 344444455567776 457899999999999988877776665 24566666778899999999999999999999
Q ss_pred HHhCCc---cc-----hhhhhhhhHHHHHhcccccc
Q psy16387 415 LEQCPI---LT-----ANYRSLLPHFLDMISSQTRS 442 (676)
Q Consensus 415 l~~~p~---l~-----~~~~k~l~~f~~lls~~~~~ 442 (676)
++..-. .. .++..++..-+.+|--..+.
T Consensus 903 l~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~ 938 (1073)
T 3gjx_A 903 LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHT 938 (1073)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCG
T ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHh
Confidence 887431 21 23446777766666554443
No 140
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=22.99 E-value=1.2e+02 Score=35.76 Aligned_cols=126 Identities=12% Similarity=0.136 Sum_probs=83.9
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccchhhcH--HHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhc
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHF--SSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELA 382 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~~~~~--~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~ 382 (676)
+.-+...+.|.|..+|+.|+.-|..+.. +|.. ..... ...++-++.|+-..+..||.++...|..|... .++.++
T Consensus 625 l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~-~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~ 701 (810)
T 3now_A 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDV-IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCE 701 (810)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHH-HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHH-HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHH
Confidence 5667788889999999999999998875 4422 22222 23677777888888999999999999877552 222222
Q ss_pred ------ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchhh--hhhhhHHHHHhc
Q psy16387 383 ------PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANY--RSLLPHFLDMIS 437 (676)
Q Consensus 383 ------p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~~--~k~l~~f~~lls 437 (676)
..++.|+-. +.|-+.+||.-|+..|.-|...-+.....- .-.++-+..++.
T Consensus 702 ~ii~~~g~I~~Lv~L----L~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 702 KILAIASWLDILHTL----IANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHHTSTTHHHHHHHH----HTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred HHHHHcCCHHHHHHH----HCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence 344444444 446799999999999988887544322111 134555555554
No 141
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.85 E-value=59 Score=28.13 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=33.5
Q ss_pred eecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEec------ccCCCCCC
Q psy16387 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK------NPCTTCDG 142 (676)
Q Consensus 82 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------~~C~~C~G 142 (676)
..||.|+-.-...|. ...|..|+.. +..+.-||.|+-.=++.+ --|..|+|
T Consensus 33 ~~CP~Cq~eL~~~g~-~~hC~~C~~~---------f~~~a~CPdC~q~LevLkACGAvdYFC~~chg 89 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG-HARCRSCGEF---------IEMKALCPDCHQPLQVLKACGAVDYFCQHGHG 89 (101)
T ss_dssp CBCSSSCSBEEEETT-EEEETTTCCE---------EEEEEECTTTCSBCEEEEETTEEEEEETTTTE
T ss_pred ccCccCCCcceecCC-EEECccccch---------hhccccCcchhhHHHHHHHhcCcchhhccCCc
Confidence 689999876443333 4569999774 335677999987755543 35676664
No 142
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.84 E-value=1.2e+02 Score=25.23 Aligned_cols=52 Identities=23% Similarity=0.589 Sum_probs=31.3
Q ss_pred eecCCCCCCCcCCCCcceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe------cccCCCCCCC
Q psy16387 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI------KNPCTTCDGK 143 (676)
Q Consensus 82 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------~~~C~~C~G~ 143 (676)
..|+.|+..-...+ ....|..|+.. +....-||.|+-.=.+. ..-|..|+|-
T Consensus 3 ~~CP~C~~~l~~~~-~~~~C~~C~~~---------~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 3 ITCPVCHHALERNG-DTAHCETCAKD---------FSLQALCPDCRQPLQVLKACGAVDYFCQNGHGL 60 (81)
T ss_dssp CCCSSSCSCCEECS-SEEECTTTCCE---------EEEEEECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred CCCCCCCCccccCC-CceECcccccc---------CCCcccCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence 56888887654433 35568888763 22334677776553322 3567777753
No 143
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=22.58 E-value=4.2e+02 Score=30.31 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=48.7
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHhhhcCCccch-hhcHHHHHHhhhcc--cccCChHHHHHHHHHHHHHhccCC
Q psy16387 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVI-KSHFSSILDSVSPL--MLDISATTRKAAVKLLSAMFSQVT 377 (676)
Q Consensus 305 lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~~~-~~~~~~il~~~~~l--i~D~~~~VR~~l~~ll~~l~~~~~ 377 (676)
|++.|+.-....+...-+-|..+-..|+++- ..+ ..+-+.++++|+.+ +++.+..|.++...+|..|..+.+
T Consensus 96 L~~~~~~~~~~~d~~~~~~L~~~L~aLs~~V-s~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~ 170 (649)
T 3tj1_A 96 IANQVALPSKNPERINDKNLNILLDILSSNI-NRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP 170 (649)
T ss_dssp HHHHHHSCTTCTTSCCHHHHHHHHHHHHHTG-GGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHhcCCCcCcCcCCHHHHHHHHHHHHhhh-hhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH
Confidence 4444543223333444445666666666664 345 34667899999887 678899999999999999887665
No 144
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=22.54 E-value=3.2e+02 Score=31.22 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=57.8
Q ss_pred CCchhhhhHHHHHHHhhhcCCccchhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhh
Q psy16387 315 NNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLAC 394 (676)
Q Consensus 315 ~n~~~RkdaL~gl~~ll~~~P~~~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~ 394 (676)
.++.+.+.=+.-|..|++.+| .++..++..++..+.-. ......+..+|+.|+..+| .-...|...|..
T Consensus 150 r~~~~v~~Y~~FL~~LvSa~~-----~yl~~vl~mLV~~F~~~-~~~~~~~H~~L~~Il~lvP-----~s~~~L~~iL~~ 218 (649)
T 3tj1_A 150 LPPHTLSKYIYFIKILCSSIP-----KWWQDVSMILVSCFILP-IKQTVCHHDMLKYFLRMIP-----SSMGFIDTYLAK 218 (649)
T ss_dssp SCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHhccCC-CcccHHHHHHHHHHHHHcC-----CCHHHHHHHHHH
Confidence 455666777777888888887 35555555555555432 1122336777777777666 344566667777
Q ss_pred hhcccchhhcccc--HHHHHHHHHhCCccchh
Q psy16387 395 AMSHLDAGVREDS--LLIIDVLLEQCPILTAN 424 (676)
Q Consensus 395 AMTHi~~~Ir~ds--l~~Ld~ll~~~p~l~~~ 424 (676)
.+-|....-+.=. +.=|=.|.+|+|.|...
T Consensus 219 ~FP~~~~s~~~~~~Yv~NLLrl~~Y~PeL~~~ 250 (649)
T 3tj1_A 219 FFPNKNDTRRKLVNYTSNLLKLRGYCSELGFQ 250 (649)
T ss_dssp TCCCTTSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred hCCCCCCchhHHHHHHHHHHHHHhhchHHHHH
Confidence 7777643322221 22233455788877543
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.33 E-value=2e+02 Score=26.98 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhhcccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccch-
Q psy16387 345 SILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA- 423 (676)
Q Consensus 345 ~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i~p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~- 423 (676)
.++-.+.-+|...+...|.|+..+-+. +.|-++.++.-||.+||.++++|+..+.
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~kr------------------------l~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHK------------------------IQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHH------------------------HTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHH------------------------hcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Q ss_pred --hhhhhhhHHHHHhcccccccccceeeEEecCCCcchhHHHHHHHHHHHHH
Q psy16387 424 --NYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSM 473 (676)
Q Consensus 424 --~~~k~l~~f~~lls~~~~~~~~~~~ltv~~~~~~~~~~~R~kvL~~L~~f 473 (676)
+..+.|+.+..+++...... .+..+-|-|+|.-++.+
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~-------------~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGD-------------RVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCT-------------TSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhccccCCC-------------CCCHHHHHHHHHHHHHH
No 146
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=22.18 E-value=11 Score=42.19 Aligned_cols=61 Identities=21% Similarity=0.459 Sum_probs=38.9
Q ss_pred ecCCCCCCCcCCC-----CcceeccccCceeEEEEe------eCCc----eeeEeCCCCCCcceEecccCCCCCCC
Q psy16387 83 TCTRCHGEKCEPG-----TKAQKCHYCNGTGLETIS------TGPF----VMRSTCRYCKGSRNLIKNPCTTCDGK 143 (676)
Q Consensus 83 ~C~~C~GtG~~~g-----~~~~~C~~C~G~G~~~~~------~G~~----~~~~~C~~C~G~G~~i~~~C~~C~G~ 143 (676)
.|..||+...... .....|-.||........ .-|- .....|..|+..=......|..|+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSCBCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccCCCccccccChh
Confidence 7999999874321 135789999986421100 0010 12468999998755556789999964
No 147
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.96 E-value=81 Score=32.74 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=32.8
Q ss_pred cceeccccCceeEEE-Eee-C--CceeeEeCCCCCCcceEecccCCCCCCCc
Q psy16387 97 KAQKCHYCNGTGLET-IST-G--PFVMRSTCRYCKGSRNLIKNPCTTCDGKG 144 (676)
Q Consensus 97 ~~~~C~~C~G~G~~~-~~~-G--~~~~~~~C~~C~G~G~~i~~~C~~C~G~G 144 (676)
....||.|++.=... ... | .......|..|+-.=......|+.|...+
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 356777787765321 121 2 23456789999988888899999998653
No 148
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=21.79 E-value=46 Score=40.05 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=8.5
Q ss_pred eccccCceeEEEEe
Q psy16387 100 KCHYCNGTGLETIS 113 (676)
Q Consensus 100 ~C~~C~G~G~~~~~ 113 (676)
.|++|.|.|.+...
T Consensus 773 rC~~C~g~G~~~~e 786 (993)
T 2ygr_A 773 RCEACTGDGTIKIE 786 (993)
T ss_dssp BCTTTTSSSEEEEC
T ss_pred cccccccccceeeh
Confidence 46777777665443
No 149
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.65 E-value=6.8e+02 Score=26.18 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=74.0
Q ss_pred hHHHHHHHhccCCchhhhhHHHHHHHhhhcCCcc--chhhcHHHHHHhhhcccccCChHHHHHHHHHHHHHhccCCh---
Q psy16387 304 SVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTS--VIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTE--- 378 (676)
Q Consensus 304 ~lk~lLs~l~h~n~~~RkdaL~gl~~ll~~~P~~--~~~~~~~~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~--- 378 (676)
.+.-|+....+-..++-.=+|.-|.+++. |..- -+.+| ...|..+..++...++.|=+.++++|..+....+.
T Consensus 161 GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~ 238 (339)
T 3dad_A 161 GLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP 238 (339)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred cHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch
Confidence 46677777766666677777888888874 2100 01112 45888999999999999999999999877653321
Q ss_pred ---hhhc--------ccHHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCc
Q psy16387 379 ---EELA--------PLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPI 420 (676)
Q Consensus 379 ---~~i~--------p~~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~ 420 (676)
..+. |.++.++.++... .--+.+++.-|+..++.+|..+|+
T Consensus 239 lv~~av~~v~~~~~~~p~~~Lv~~L~~~-~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 239 LFIRAVNSVASTTGAPPWANLVSILEEK-NGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHHHHCCCTTHHHHHHHTTT-TSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHhcCCC
Confidence 1111 2233344444300 013678999999999999999994
No 150
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.05 E-value=54 Score=24.72 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=3.3
Q ss_pred eEeCCCC
Q psy16387 120 RSTCRYC 126 (676)
Q Consensus 120 ~~~C~~C 126 (676)
...|+.|
T Consensus 37 R~~C~kC 43 (50)
T 3j20_Y 37 RWACGKC 43 (50)
T ss_dssp EEECSSS
T ss_pred eEECCCC
Confidence 3445554
No 151
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=20.88 E-value=3.3e+02 Score=31.84 Aligned_cols=114 Identities=20% Similarity=0.340 Sum_probs=76.8
Q ss_pred hhhHHHHHHHhhhcCC---ccchhhcHH--HHHHhhhcccccCChHHHHHHHHHHHHHhccCChhhh-ccc---------
Q psy16387 320 KQDGLSGLLEIITLNP---TSVIKSHFS--SILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEEL-APL--------- 384 (676)
Q Consensus 320 RkdaL~gl~~ll~~~P---~~~~~~~~~--~il~~~~~li~D~~~~VR~~l~~ll~~l~~~~~~~~i-~p~--------- 384 (676)
+.+||..|+.+-+... .++-..-+. ..++.+..++.+....||+++..++..+.. .++.+ +-|
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS--HPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT--SGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHhhcCchhh
Confidence 8899999999876431 111111222 267788888999999999999999988875 44443 233
Q ss_pred --HHHHHHHHhhhhcccchhhccccHHHHHHHHHhCCccchh---hhhhhhHHHHHhccc
Q psy16387 385 --FEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN---YRSLLPHFLDMISSQ 439 (676)
Q Consensus 385 --~~~l~~~i~~AMTHi~~~Ir~dsl~~Ld~ll~~~p~l~~~---~~k~l~~f~~lls~~ 439 (676)
+++++.++.+ =+.++|+-|.-+|..|-..+|..+.. ....++..++++..+
T Consensus 654 ~rL~lLV~Ll~s----~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 654 RNFNILVKLLQL----SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp HHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcC----CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc
Confidence 4567776654 47899999999998887777753221 124555566666654
No 152
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=20.78 E-value=1.7e+02 Score=29.41 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=23.7
Q ss_pred ceeccccCceeEEEEeeCCceeeEeCCCCCCcceEe
Q psy16387 98 AQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLI 133 (676)
Q Consensus 98 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 133 (676)
.-.|..|+....+....|-++....|+.|.+.|..+
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l 169 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRL 169 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEE
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEE
Confidence 457999986654333233455567899999999544
No 153
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.12 E-value=48 Score=27.68 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=29.3
Q ss_pred eeeecCCCCCCCcCCC--CcceeccccCceeEEEEe-eCCceeeEeCCCCCCcceEecccCCCC
Q psy16387 80 IMDTCTRCHGEKCEPG--TKAQKCHYCNGTGLETIS-TGPFVMRSTCRYCKGSRNLIKNPCTTC 140 (676)
Q Consensus 80 r~~~C~~C~GtG~~~g--~~~~~C~~C~G~G~~~~~-~G~~~~~~~C~~C~G~G~~i~~~C~~C 140 (676)
+.+.|..|...|=... -....|-.|...|.+.+. ..| .....|-.|...|.+ ...|+.=
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p-~~~~~CYnCG~~GH~-~rdC~~~ 65 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP-FHTIYCYNCGGKGHF-GDDCKEK 65 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC--------------CCCBCSSSSCBSSC-GGGCSSC
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCC-CCCCeecccCCCCcC-cccCCcc
Confidence 3567999988774321 123357788888754221 111 134679999999964 5556543
Done!