RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16387
(676 letters)
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 173 bits (441), Expect = 2e-48
Identities = 83/243 (34%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 1 MGREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEII 60
G G G G G +N I F +IFG G GG G G +
Sbjct: 64 FGHAGFNGGGGGGGGGFNG-FDIGFFGDFGDIFGDFFGGGG--------GSGRRRRSGPR 114
Query: 61 --------MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETI 112
++LTF +A GV K++ + ++C CHG +PGT + C C GTG
Sbjct: 115 RGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRR 174
Query: 113 STGP----FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM 168
G F + TC C G +IK PC+TC GKG+ +R+TITV +PAGV+ GQ +R+
Sbjct: 175 QQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRV 234
Query: 169 N-------VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD 221
+ G ++Y+ RV+ IFERDG D++ IS +QA+LGG I +P + D
Sbjct: 235 SGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGD 294
Query: 222 QTV 224
+
Sbjct: 295 VKL 297
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 172 bits (437), Expect = 1e-47
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 18/227 (7%)
Query: 7 GGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFT 66
GG G +G + D ++F + FG GG G + G +++T
Sbjct: 77 GGFGGFGFGGFGG----DFGDIFEDFFGG-GGGGRRRPNRPRRG----ADLRYNLEITLE 127
Query: 67 QAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG--LETISTGPFVMRSTCR 124
+A GV K++ + TC+ CHG +PGT + C CNG+G TG F + TC
Sbjct: 128 EAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCP 187
Query: 125 YCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN-------VGKSKKEI 177
C G+ +IK+PC C GKG+ ++++I+V +PAGV+DG +R++ G ++
Sbjct: 188 TCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDL 247
Query: 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTV 224
Y+ V+ IFERDG D++ IS ++A LGG I +P + +
Sbjct: 248 YVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKL 294
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 166 bits (422), Expect = 1e-45
Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 2 GREGMGGAGNYGSANWN--FHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEI 59
G EG+ G G G + ++ F S F +IF GFGG G +
Sbjct: 70 GHEGLSGTGFSGFSGFDDIFSS-------FGDIFEDFFGFGG---GRRGRSRTAVRAGAD 119
Query: 60 I---MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGP 116
+ + L F +AA G K++ ++ ++TC CHG CEPGT C C G+G T S G
Sbjct: 120 LRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGF 179
Query: 117 FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN------- 169
F +R+TC C+G +I +PC TC G+G+ +T+ V +PAGV+ G +R+
Sbjct: 180 FSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGV 239
Query: 170 VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
G ++Y+ VE + FERDG D+H IS QA LG I +P
Sbjct: 240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVP 286
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 164 bits (418), Expect = 4e-45
Identities = 88/263 (33%), Positives = 126/263 (47%), Gaps = 58/263 (22%)
Query: 33 FGQTG---GFGGSQEGG--FSEGFGF-----------------SQPQ-----EIIMKLTF 65
FG G GFGG GG F GFGF + P+ + M LTF
Sbjct: 68 FGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTF 127
Query: 66 TQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRS 121
+A G K++ + +TC CHG +PGT + C +C G+G ++ G V R
Sbjct: 128 EEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQ 187
Query: 122 TCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM--------NVGKS 173
TC +C G+ IK C TC GKG+ +R+ I V +PAGV++GQ +R+ N G +
Sbjct: 188 TCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPA 247
Query: 174 KKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVK 233
++Y+ FRV + FERDG DI+ ++ +QA LG I +P ++ G VK
Sbjct: 248 -GDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH----------GKVK 296
Query: 234 L---SSHQIMVKTGHKKFVKKEK 253
L + Q TG +F K K
Sbjct: 297 LKIPAGTQ----TG-TQFRLKGK 314
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 156 bits (397), Expect = 3e-42
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 1 MGREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEII 60
G G GG G +G F ++F +IFG G G + + ++
Sbjct: 78 GGGGGFGGGGGFGDI---F------GDIFGDIFGGGRGGGRQRA---------RRGADLR 119
Query: 61 --MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFV 118
M++T +A RGV K++ + + TC CHG +PGT + C C+G G + G F
Sbjct: 120 YNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFT 179
Query: 119 MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN-------VG 171
++ TC C G +IK+PC C G+G+ + +T++V +PAGV+ G +R++ G
Sbjct: 180 VQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERG 239
Query: 172 KSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGI 218
++Y+ V++ IFERDG D++ IS + A LGG I +P +
Sbjct: 240 GPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTL 286
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 154 bits (392), Expect = 2e-41
Identities = 91/260 (35%), Positives = 122/260 (46%), Gaps = 42/260 (16%)
Query: 29 FRNIFGQTGGFGGSQEGG-----FSEGFGF-------SQPQ-----EIIMKLTFTQAARG 71
F G GGF GS G FS FG + P+ + + L F +A G
Sbjct: 77 FGGGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFG 136
Query: 72 VNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST-GPF-VMRS--TCRYCK 127
K+V TC C+G +PGT C C+G+G+ T+ T P +MR TC C
Sbjct: 137 KEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCH 196
Query: 128 GSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM-NVGKSKK------EIYIT 180
G+ IK PC TC G G Q T++V +PAGVE GQ +R+ G++ ++Y+
Sbjct: 197 GTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVV 256
Query: 181 FRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIM 240
FRVE S FERDG I+ IS QA LG T+ +P ++ G V+L I
Sbjct: 257 FRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH----------GDVELK---IP 303
Query: 241 VKT-GHKKFVKKEKARVKLR 259
T KKF + K KLR
Sbjct: 304 AGTQTGKKFRLRGKGAPKLR 323
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 144 bits (365), Expect = 8e-38
Identities = 78/235 (33%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 2 GREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQ---E 58
G G+ G G +G F S D F +IFG GF G GG G +PQ +
Sbjct: 70 GHAGVNGNGGFG----GFSSAEDIFSHFSDIFGDLFGFSG---GGSRRG---PRPQAGSD 119
Query: 59 IIMKLT--FTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGP 116
+ LT F QAA+G + + TC C G PGT + C +C G+G S G
Sbjct: 120 LRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF 179
Query: 117 FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN------- 169
F + C C+G +I +PC C G G Q + + V +PAGV+ G +R+
Sbjct: 180 FQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGV 239
Query: 170 VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTV 224
G ++Y+ VE IF+R G D+ EIS QA LG I +P + D T+
Sbjct: 240 HGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTL 294
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 142 bits (359), Expect = 5e-37
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Query: 7 GGAGNYGSANWNFHSTIDPEELFRNIFGQTG------GFGGSQEGGFSEGFGFSQPQEII 60
G AG G + + + I+ E++F+ G GFGG G G
Sbjct: 70 GHAGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYT----E 125
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG----LETISTGP 116
+++T +AA GV KD+ ++ C C+G + EPG++ + C C GTG + G
Sbjct: 126 VEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQ 185
Query: 117 FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN------- 169
+ +TC C+G +++ PC+ C GKG + +TI+V +PAGVE G +R++
Sbjct: 186 MMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGD 245
Query: 170 VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGI 218
G ++Y+ +V+ IF R+G +++ IS QA LG T+ +P I
Sbjct: 246 RGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTI 294
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 141 bits (358), Expect = 9e-37
Identities = 73/237 (30%), Positives = 109/237 (45%), Gaps = 25/237 (10%)
Query: 1 MGREGMGGAGNYGSANWNFHSTIDPEEL-FRNIFGQTGGFGGSQ-----EGGFSEGFGFS 54
G G G +G F + D E ++F G GG G F+ G G +
Sbjct: 83 FGGRRFDGGGGFGG----FGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSA 138
Query: 55 QPQ--------EIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNG 106
+P E L F +AA+GV + L CT CHG PGT + C CNG
Sbjct: 139 RPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNG 198
Query: 107 TGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTV 166
+G+ + + G F C C+G+ ++I++PC C G G + +TI V +P GVEDGQ +
Sbjct: 199 SGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRI 258
Query: 167 RMN-------VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
R+ G ++Y+T V +F RDG D+ +S ++ LG T+ +P
Sbjct: 259 RLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVP 315
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 141 bits (356), Expect = 1e-36
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 19/227 (8%)
Query: 5 GMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGS--QEGGFSEGFGFSQPQEIIMK 62
G GG G+ G ++F ++F + FG GGFG S + G G E +
Sbjct: 76 GAGGFGSGGFGGFDFSDMGGFGDIFDSFFG--GGFGSSSRRRNGPQRGADI----EYTIN 129
Query: 63 LTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFV 118
LTF +A GV K++ + + C C+G +PGT + C C GTG + G FV
Sbjct: 130 LTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFV 189
Query: 119 MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM-------NVG 171
+TC C GS +I++PC C GKG+ + + I V VPAGV+ G + + G
Sbjct: 190 STTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNG 249
Query: 172 KSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGI 218
++YI RV F+R G DI+ + IS ++A LG I++P +
Sbjct: 250 GPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTV 296
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 135 bits (342), Expect = 1e-34
Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 34/245 (13%)
Query: 20 HSTIDPEELFRNIFGQ-----------TGGFGGSQEGGFSEGFGFSQ------PQE---- 58
H+ DP + FGQ GGFG E F + FG + PQ+
Sbjct: 72 HAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADI 131
Query: 59 -IIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST--- 114
++LTF +AA G K++ ++ + C C G +PG+K C C+GTG
Sbjct: 132 RYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTP 191
Query: 115 -GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN---- 169
G V TC C G +I +PC C G G+ +R+ I V +PAG++DGQ + +
Sbjct: 192 FGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGE 251
Query: 170 ---VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLF 226
G ++YI +V+ +F+R+G +++ I+ + A LGG I IP + D +
Sbjct: 252 PGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTL-DGKVKFT 310
Query: 227 LEQGS 231
+ +G+
Sbjct: 311 IPEGT 315
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 128 bits (324), Expect = 2e-32
Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 19/256 (7%)
Query: 2 GREGM-GGAGNYGSANWNFHSTI--DPEELFRNIFG--QTGGFGGSQEGGFSEGFGFSQP 56
G+ G+ GAG +G + S I D ++F + FG + GG GG + G G
Sbjct: 70 GKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYN 129
Query: 57 QEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGP 116
E+ + AA G + + +++C C+G G+ C C G+G + G
Sbjct: 130 LEV----SLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGF 185
Query: 117 FVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN------- 169
F + +TC C+G +I NPC TC G+G +R+TI + +P GVE G ++++
Sbjct: 186 FSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGP 245
Query: 170 VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQ 229
G ++Y+ ++K ++FER G D+ +ISL+QA+LG I +P I + + + +
Sbjct: 246 NGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPE 305
Query: 230 GSVKLSSHQIMVKTGH 245
G+ S Q+ GH
Sbjct: 306 GT---ESGQVFRLKGH 318
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 128 bits (322), Expect = 3e-32
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 34/232 (14%)
Query: 19 FHSTIDPEELFR-NIFGQTG---GFGGSQEGGFSE-----------GFGFSQPQ------ 57
+ + DP++ + FG T GFGG G F G G P
Sbjct: 53 YDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGA 112
Query: 58 --EIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG-LETIST 114
+ M L F +A G ++ + +TC CHG +PGTK + C +C G+G L
Sbjct: 113 DLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQN 172
Query: 115 GPF---VMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN-- 169
PF V R C +C+G+ +IK C TC GKG+ +R+ I V VPAG++ GQ +R++
Sbjct: 173 TPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQ 232
Query: 170 -----VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
G ++Y+ F V+ + FERDG DI+ ++ Q LG I +P
Sbjct: 233 GEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVP 284
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 124 bits (313), Expect = 6e-31
Identities = 76/225 (33%), Positives = 108/225 (48%), Gaps = 26/225 (11%)
Query: 20 HSTID----PEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQ--------EIIMKLTFTQ 67
H+ ID E++FR GGFG E F G + +T +
Sbjct: 71 HAGIDNQYSAEDIFRG--ADFGGFGDIFEMFFGGGGR-RGRMGPRRGSDLRYDLYITLEE 127
Query: 68 AARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG--LETIST--GPFVMRSTC 123
AA GV KD+ + + C+ C G +PGT ++C C GTG T ST G FV +TC
Sbjct: 128 AAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTC 187
Query: 124 RYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN-------VGKSKKE 176
C G +I++PC C G G+ + + ITV VPAG + G ++++ G +
Sbjct: 188 STCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGD 247
Query: 177 IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD 221
+YI V++ D FER G DI S IS +QA LG I +P +Y
Sbjct: 248 LYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK 292
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 121 bits (304), Expect = 1e-29
Identities = 72/242 (29%), Positives = 107/242 (44%), Gaps = 31/242 (12%)
Query: 5 GMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGG-FGGSQE------GGFSEGFGF-SQP 56
G GG G G N E+ R G GG FGG GG E FG P
Sbjct: 74 GAGGFGGAGMGNM--------EDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGP 125
Query: 57 --------QEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG 108
+++ + L+F +AA+GV K++++ +C C G + C C G+G
Sbjct: 126 AGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSG 185
Query: 109 LETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM 168
S G F M STC C G +I +PC+ C G+G+ ++++ V +PAGV+ G ++M
Sbjct: 186 QVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKM 245
Query: 169 N-------VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD 221
G ++Y+ VE +FER G D+ I A LG IP + +
Sbjct: 246 EGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKE 305
Query: 222 QT 223
T
Sbjct: 306 GT 307
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 119 bits (300), Expect = 4e-29
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 26/229 (11%)
Query: 8 GAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFG--------FSQPQ-- 57
G G G +NF D +LF G GG G GG + FG +QP+
Sbjct: 86 GPGGGGGGGFNF----DLGDLFGG--GAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRG 139
Query: 58 ---EIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST 114
E + L+FT+A G + L C C G + GT + C C+GTG + ++
Sbjct: 140 ADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS 199
Query: 115 GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM------ 168
G F + C CKG + +PC C G G+ +T+ V +PAGV DGQ +R+
Sbjct: 200 GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAP 259
Query: 169 -NVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
G ++Y+ V+ +F R G ++ ++ +A LG +R+P
Sbjct: 260 GERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVP 308
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 118 bits (298), Expect = 5e-29
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 24/240 (10%)
Query: 3 REGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMK 62
++ GG GN+G FH I+ ++F + F G S+ G + +
Sbjct: 75 QQSRGGGGNHGG----FHPDIN--DIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTIN 128
Query: 63 LTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRST 122
L +A G+ K++ C CHG E G C C+G G + G F +
Sbjct: 129 LE--EAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQA 186
Query: 123 CRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN-------VGKSKK 175
C C+G+ +IKNPC C G G++ +++ ++V +PAGVE+G +R G +
Sbjct: 187 CHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSG 246
Query: 176 EIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLS 235
++Y+ ++ DI++ DG ++H IS A LGG I +P I E G V L+
Sbjct: 247 DLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVI---------EGGKVNLT 297
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 115 bits (291), Expect = 6e-28
Identities = 70/240 (29%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 34 GQTGGFGGSQEGGFSEGF--------------GFSQPQE---IIMKLTFTQAARGVNKDV 76
G GGFGG GG + F G +P + M+L + A GV K V
Sbjct: 76 GGGGGFGGGF-GGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQV 134
Query: 77 VLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPF---VMRST-CRYCKGSRNL 132
+ C RCHG+ +K C C G G F VM S C C+G +
Sbjct: 135 TVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV 194
Query: 133 IKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM----NVGKS---KKEIYITFRVEK 185
I +PC C G G+ R+ ITV +PAGV DG +R+ VG ++Y+ +
Sbjct: 195 IPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQP 254
Query: 186 SDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGH 245
D+F RDG D+H + + A LG T+ + I D + + + G+ ++ G
Sbjct: 255 HDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGT---QPGSVITLRGR 311
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 112 bits (281), Expect = 8e-27
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 39/258 (15%)
Query: 33 FGQTGGFGGSQEGGFSEGF-GFS---------------------------QPQEII--MK 62
FG T GG GFS GF GFS + Q++ ++
Sbjct: 68 FGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIE 127
Query: 63 LTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRST 122
++ A G ++ + C C G+K E GT C+ CNG+G G F + +T
Sbjct: 128 ISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTT 187
Query: 123 CRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM----NVGKSKKE-- 176
C C G+ +I NPC +C GKG +++TI + +PAG++D Q ++M +V ++
Sbjct: 188 CPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYG 247
Query: 177 -IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLS 235
+YI ++ IF+R+G D+++ IS +QA LG I+I I + + + +G+ +
Sbjct: 248 DLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTE--N 305
Query: 236 SHQIMVKTGHKKFVKKEK 253
QI++K + EK
Sbjct: 306 DEQIIIKNEGMPILHTEK 323
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 112 bits (281), Expect = 1e-26
Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 39/273 (14%)
Query: 2 GREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEII- 60
G G+ GA + + ++F F GFGG+ G Q + +
Sbjct: 68 GEAGVSGAAGFP----DMGDMGGFADIFETFFS---GFGGAGGQGGRRRRRGPQRGDDLR 120
Query: 61 --MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST---- 114
+KL F +A G K++ + ++TC C G +PGT C C G G +T
Sbjct: 121 YDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPF 180
Query: 115 GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM----NV 170
G F S C C G+ +I++PC C G+G + + + +PAGV+ G +R+ +
Sbjct: 181 GSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDA 240
Query: 171 GKS---KKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIR-----------IP 216
G ++Y+ V+ F RDG +I S +IS QA+LG T+ IP
Sbjct: 241 GLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIP 300
Query: 217 GIYDDQTVLFLE-QGSVKLSS------HQIMVK 242
TVL LE +G +L + H I VK
Sbjct: 301 AGTQPNTVLTLENKGVPRLGNPVARGDHLITVK 333
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 108 bits (272), Expect = 1e-25
Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 20/230 (8%)
Query: 5 GMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLT 64
GM G +G + DP ++F +FG G GG G + G E ++T
Sbjct: 73 GMPGGDPFGGMGF------DPMDIFEQLFGGAGFGGGRGRRGPARG----DDLETEARIT 122
Query: 65 FTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQK-CHYCNGTGLETIST----GPFVM 119
QA G +V + + C CHG + EPG K K C C G G G
Sbjct: 123 LEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVET 182
Query: 120 RSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM----NVG-KSK 174
+ C C+G +I +PCT C G+G+ + +T+ V +P G+++G +R+ N G
Sbjct: 183 QQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN 242
Query: 175 KEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTV 224
++Y+ +E R+ + A I ++A LGG I +P + Q +
Sbjct: 243 GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVI 292
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 107 bits (270), Expect = 3e-25
Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 22/249 (8%)
Query: 1 MGREGMGGAGNYGSANWNFHSTIDPEELFRNIFG-QTGGFGGSQEGGFSEGFGFSQPQE- 58
G G+GGA G + S D +F +IFG GGFGG GGF G +
Sbjct: 70 FGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGF--GGFGGGGSQQRVFRG 127
Query: 59 ----IIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLET--- 111
+ +KL + + GV K +K C+ CHG E ++ C C G+G T
Sbjct: 128 SDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQ 187
Query: 112 -ISTGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV 170
G +STC C G +IK C C G+G + ITV +PAGV +G + MN
Sbjct: 188 NTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMN- 246
Query: 171 GKSKK--------EIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQ 222
GK ++ + E RD D+ N +S+ A LGG + +P I D +
Sbjct: 247 GKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTI-DGK 305
Query: 223 TVLFLEQGS 231
+ +E G+
Sbjct: 306 AKVKIEAGT 314
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 105 bits (264), Expect = 2e-24
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 29 FRNIFGQTGGFGGSQEGG-FSEGFGF--------SQPQEIIMK--LTFTQAARGVNKDVV 77
F ++F G G S FS+ FG ++ Q + + LTF + GV+K +
Sbjct: 86 FEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIE 145
Query: 78 LKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST--GPFVMRS--TCRYCKGSRNLI 133
L ++ C++C G E + C+ C+GTG + G F + C C G+ +I
Sbjct: 146 LDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII 205
Query: 134 KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKEI--------YITFRVEK 185
KN C C GKG++ +R+ I V +P G+ Q ++++ K + I +++
Sbjct: 206 KNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLS-QKGHASLNNGVNGDLIIDIYLKE 264
Query: 186 SDIFER-DGPDIHSNAEISLSQAVLGGTI-----------RIP-GIYDDQTVLFLEQGSV 232
S +FE + DI IS A+LG I ++P I ++ ++ +G
Sbjct: 265 SKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLY 324
Query: 233 K 233
K
Sbjct: 325 K 325
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 103 bits (259), Expect = 8e-24
Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 37/252 (14%)
Query: 7 GGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQ--------- 57
GG YG +F+ D F ++FG GG GF + FG +
Sbjct: 80 GGGPGYGGGGGDFN---DIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPG 136
Query: 58 ---EIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTG-LETIS 113
+I +KLT + A+GV K + +K C C+G + G + C C+G+G + S
Sbjct: 137 TDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQAS 195
Query: 114 T---GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN- 169
G FV + C C G ++K+ C C G+G T+ V VPAGV+DG + +
Sbjct: 196 KTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRG 255
Query: 170 ------VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQT 223
G + ++ + + ++F R+G D+ N +S VLG + +P +
Sbjct: 256 QGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTL----- 310
Query: 224 VLFLEQGSVKLS 235
G+VKL+
Sbjct: 311 -----DGAVKLT 317
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 100 bits (251), Expect = 8e-23
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 59 IIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGL--ETIST-- 114
+++T + G V +TC C G EPG+ C C+GTG E +
Sbjct: 130 YEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFF 189
Query: 115 GPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSK 174
G FV TC C G+ + C C G G+ +R TV +PAGVEDG +R+ G +
Sbjct: 190 GVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNA 249
Query: 175 -------KEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
++Y+ RV F+R G D+ + I QA+LG T+ +P
Sbjct: 250 GYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVP 298
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 95.0 bits (236), Expect = 5e-21
Identities = 70/245 (28%), Positives = 104/245 (42%), Gaps = 35/245 (14%)
Query: 7 GGAGNYGSANW-NFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEII----- 60
G N+ NW NF D ++F IFG G FG F GFG Q I
Sbjct: 76 AGGSNF---NWDNFTHFSDINDIFNQIFG--GNFGSD----FFSGFGNQQSTRNIDLDIY 126
Query: 61 --MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFV 118
+ ++ A G K + + C C G + G K C C+GTG + I G
Sbjct: 127 TNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVRGQGF 185
Query: 119 MR----STCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM-NVGKS 173
R +TCR C G + + C C+G G + I+V +P G D +R+ G+S
Sbjct: 186 FRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS 245
Query: 174 ----KKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQ 229
++Y+ RV +R D++ + +I+ QA LGG I I LF E+
Sbjct: 246 YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK--------LFREK 297
Query: 230 GSVKL 234
++K+
Sbjct: 298 YNLKI 302
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 88.3 bits (220), Expect = 2e-20
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 148 QRQTITVPVPAGVEDGQTVRM----NVGKSKKE---IYITFRVEKSDIFERDGPDIHSNA 200
+++T+TV +PAGV+DGQ +R+ + G + +Y+ RV+ +F RDG D++
Sbjct: 33 EKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEV 92
Query: 201 EISLSQAVLGGTIRIPGIYDDQTV 224
ISL++A+LGG I +P + +
Sbjct: 93 PISLTEALLGGEIEVPTLGGKVKL 116
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 92.1 bits (229), Expect = 5e-20
Identities = 53/233 (22%), Positives = 106/233 (45%), Gaps = 17/233 (7%)
Query: 2 GREGMGGAG--NYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEG--FGFSQP- 56
G G+G G ++ + E++ ++F G + + +P
Sbjct: 68 GHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPV 127
Query: 57 --QEIIMKLTFT--QAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETI 112
++I + + +A G + + C C G +PG+ + C C G+G
Sbjct: 128 KGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQ 187
Query: 113 STGPFVMRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMN--- 169
G F + TC C G +++ PC+ C+G+G +++TI V +P GV++G +R+
Sbjct: 188 RGGFFRISQTCPTCGGE-GVLREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKG 246
Query: 170 ----VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGI 218
G ++YI +V+ +FER G +++ + I++++AVLG + +P +
Sbjct: 247 HAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLL 299
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40.
Central/middle or CxxCxGxG-motif containing domain of
DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are
highly conserved and play crucial roles in protein
translation, folding, unfolding, translocation, and
degradation. They act primarily by stimulating the
ATPase activity of Hsp70s, an important chaperonin
family. Hsp40 proteins are characterized by the presence
of an N-terminal J domain, which mediates the
interaction with Hsp70. This central domain contains
four repeats of a CxxCxGxG motif and binds to two Zinc
ions. It has been implicated in substrate binding.
Length = 65
Score = 82.7 bits (205), Expect = 1e-19
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 84 CTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCKGSRNLIKNPCTT 139
C C+G +PGTK + C C G+G G F ++TC C G+ +IK+PC
Sbjct: 1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60
Query: 140 CDGKG 144
C GKG
Sbjct: 61 CKGKG 65
Score = 28.8 bits (65), Expect = 1.5
Identities = 9/27 (33%), Positives = 9/27 (33%), Gaps = 5/27 (18%)
Query: 83 TCTRCHGEKCEPGTK-AQKCHYCNGTG 108
TC C G G C C G G
Sbjct: 43 TCPTCGGT----GKIIKDPCPKCKGKG 65
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 87.8 bits (217), Expect = 1e-18
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 26/215 (12%)
Query: 29 FRNIFGQTGGFGGSQEGGFSEGFGFS------QPQEI------IMKLTFTQAARGVNKDV 76
F + F G F F + FGF Q I ++L+F +A G K +
Sbjct: 83 FSDFFEDLGSF-------FEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTI 135
Query: 77 VLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNP 136
++ C C G + + C CNG G + G TC C+G +IK P
Sbjct: 136 KVQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTP 194
Query: 137 CTTCDGKGQFAQRQTITVPVPAGVED-GQTVRMNVG----KSKK-EIYITFRVEKSDIFE 190
C C GK + + I +P G++D + V N G K K+ ++Y+ RV++ + F+
Sbjct: 195 CQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFK 254
Query: 191 RDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVL 225
R+G D+ A + + LG TI++P + D+ L
Sbjct: 255 REGCDLFIEAPVFFTTIALGHTIKVPSLKGDELEL 289
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central
cysteine-rich (CR) domain of DnaJ proteins contains four
repeats of the motif CXXCXGXG where X is any amino acid.
The isolated cysteine rich domain folds in zinc
dependent fashion. Each set of two repeats binds one
unit of zinc. Although this domain has been implicated
in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 65
Score = 78.6 bits (194), Expect = 4e-18
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 84 CTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCKGSRNLIKNPCTT 139
C CHG +PG K + C CNG+G G F M+ TC C G+ +IK+PC
Sbjct: 1 CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60
Query: 140 CDGKG 144
C GKG
Sbjct: 61 CKGKG 65
>gnl|CDD|221535 pfam12333, Ipi1_N, Rix1 complex component involved in 60S ribosome
maturation. This domain family is found in eukaryotes,
and is typically between 91 and 105 amino acids in
length. This family is the N terminal of Ipi1, a
component of the Rix1 complex which works in conjunction
with Rea1 to mature the 60S ribosome.
Length = 86
Score = 70.7 bits (174), Expect = 4e-15
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 378 EEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTA--NYRSLLPHFLDM 435
L P +++ Y+ AM+H+ +R DSL +D+LLE P L + +L +F D+
Sbjct: 2 PSLLEPHIRLLLLYIRSAMTHIAPDIRLDSLKFLDLLLEYAPDLVVSGYWVKILNNFFDL 61
Query: 436 ISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSML 474
+ T+ RIKVL L L
Sbjct: 62 LGWNRNG--------------KTSKKARIKVLQALAQFL 86
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 76.4 bits (188), Expect = 9e-15
Identities = 83/339 (24%), Positives = 131/339 (38%), Gaps = 74/339 (21%)
Query: 2 GREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEII- 60
G EG+ G A D +LF IFG GG + GG G ++I+
Sbjct: 90 GEEGL--EGGEQPA--------DASDLFDLIFG-----GGRKPGGKKRG------EDIVS 128
Query: 61 -MKLTFTQAARG------VNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETI- 112
+K+T Q G +NKDV+ C C G P C CNG G+
Sbjct: 129 HLKVTLEQIYNGAMRKLAINKDVI------CANCEGHG-GPKDAFVDCKLCNGQGIRVQI 181
Query: 113 -STGPFVMR--STCRYCKGSRNLI--KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR 167
G + + STC C G +I C C GKG R+ + V + GV + +
Sbjct: 182 RQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKIT 241
Query: 168 MNVGKSKKEIYITFRV------EKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDD 221
+ +K I V + D F+R+G D+ +ISL +A+ G I + D
Sbjct: 242 FHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHL-DG 300
Query: 222 QTVL-------FLEQGSVKLSSHQIM------VKTGH------------KKFVKKEKARV 256
+ +L ++ G +K+ +++ M K G+ +KF +EK +
Sbjct: 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEIL 360
Query: 257 KLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKERGENE 295
K K T E + V E++K+R + +
Sbjct: 361 KSLFPQNPEEKKDLEDTEIEVVTAQNVDPEEVKDRDQKQ 399
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 52.6 bits (126), Expect = 2e-07
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 152 ITVPVPAGVEDGQTVRM-NVGKSKKEIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLG 210
++V +P GV +GQ +R+ G+ ++Y+ R+ +F +G D+++ ++ AV+G
Sbjct: 158 LSVRIPPGVREGQVIRLAGKGRQGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVG 217
Query: 211 GTIRIP 216
G +R+
Sbjct: 218 GKVRVM 223
>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional.
Length = 111
Score = 41.0 bits (96), Expect = 2e-04
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 79 KIMDTCTRCHGEKCEP--GTKAQKCHYCNGTGLETISTGPFVMR-STCRYCKGSRNLIKN 135
+I + R + + C P GT AQ C +C G+G T+ G S C C G+ +L
Sbjct: 31 QIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT-- 88
Query: 136 PCTTCDGKG 144
CTTC G G
Sbjct: 89 -CTTCQGSG 96
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 37.9 bits (89), Expect = 0.001
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 195 DIHSNAEISLSQAVLGGTIRIPGIY 219
D++ ISL +A+LGGT+ +P +
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLD 25
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 39.4 bits (92), Expect = 0.005
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 150 QTITVPVPAGVEDGQTVRMN-------VGKSKKEIYITFRVEKSDIFERDGPDIHSNAEI 202
+T+ V +PAGV +GQ +R+ G ++++ + +F+ G D+ +
Sbjct: 158 KTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPL 217
Query: 203 SLSQAVLGGTIRIP 216
+ +A LG + +P
Sbjct: 218 APWEAALGAKVTVP 231
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 37.3 bits (87), Expect = 0.031
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 282 IVIREQLKERGENELLSVQRKLSVKELMSRLRHNNS---AVKQDGLSGLLEIITLN---- 334
V + LKE+G L + KLS ++L RLR ++ Q GL L ++++++
Sbjct: 580 FVFLKDLKEKGITNLSELNDKLSSEDLYKRLRPKHATIYVKNQVGLKNLYKLVSISHTKY 639
Query: 335 -------PTSVIKSHFSSIL 347
P SV+K + +L
Sbjct: 640 FYGRPRIPRSVLKKNREGLL 659
>gnl|CDD|193556 cd05681, M20_dipept_like_4, Uncharacterized M20 Dipeptidases.
Peptidase M20 family, unknown dipeptidase-like subfamily
3 (inferred by homology to be dipeptidases). M20
dipeptidases include a large variety of bacterial
enzymes including cytosolic nonspecific dipeptidase
(CNDP), Xaa-methyl-His dipeptidase (anserinase),and
canosinase. These dipeptidases have been shown to act on
a wide range of dipeptides, but not larger peptides. For
example, anserinase mainly catalyzes the hydrolysis of
N-alpha-acetylhistidine while carnosinase degrades
beta-alanyl-L-histidine.
Length = 430
Score = 33.3 bits (77), Expect = 0.37
Identities = 33/147 (22%), Positives = 43/147 (29%), Gaps = 56/147 (38%)
Query: 195 DIHS-------NAEISLSQAV-----LGGTIRIPGIYDDQTVLFLEQ----GSVKLSSHQ 238
D+HS N L QA+ GG I IPG YDD E+ +
Sbjct: 192 DLHSSYAAVVDNPAWRLVQALASLRDEGGRILIPGFYDDVRPPTEEEKELIDKLPFDEEA 251
Query: 239 IMVKTGHKKFVKKEKARVKLRKSY-------------------KTILPKGQNVTNTEFKV 279
+ G K+ + R L KTILP E
Sbjct: 252 LKKAFGLKRPLDGLTGRDALEALVFEPTCNINGLYSGYTGEGSKTILPA-------EATA 304
Query: 280 K---RIV-----------IREQLKERG 292
K R+V +R L + G
Sbjct: 305 KLDFRLVPDQDPEEVLDLLRAHLDKNG 331
>gnl|CDD|199910 cd10748, anti-TRAP, anti-TRAP (AT) protein specific to Bacilli. In
Bacillus subtilis and related bacteria, AT binds to the
TRAP protein, (tryptophan-activated trp RNA-binding
attenuation protein), effectively disrupting interaction
of TRAP with mRNAs. Upon binding of tryptophan, TRAP
(which forms a complex of 11 identical subunits)
interacts with a specific location in the leader RNA and
blocks translation of the tryptophan biosynthetic
operon. AT, in turn, recognizes the tryptophan-activated
TRAP complex and prevents RNA binding. AT is expressed
in response to high levels of uncharged tryptophan tRNA.
AT contains a zinc-binding motif that closely resembles
the zinc-binding motifs in the zinc-finger region of
DnaJ/Hsp40. AT has been shown to form homo-dodecameric
assemblies, and can actually do that in two different
relative orientations, resulting in two different
dodecamers. Recent data suggest that the trimeric form
of AT may be the biologically relevant active complex.
Length = 52
Score = 29.9 bits (67), Expect = 0.42
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 119 MRSTCRYCKGSRNLIKNPCTTCDGKG 144
+ TC C+ + PC C GKG
Sbjct: 7 LEVTCPKCERAGEEEGTPCPKCSGKG 32
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 32.9 bits (74), Expect = 0.69
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 139 TCDGKGQFAQRQTITVPVPAGVEDGQTVRMNV-------GKSKKEIYITFRVEKSDIFER 191
T DG + + IT+ + + + G ++ + F+V S+ F+
Sbjct: 684 TVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIPSNFFQI 743
Query: 192 DGPDIHSNAEISLSQAVLGGTIRIPGIY 219
+H A + A GG I + G
Sbjct: 744 KNDGLHVAALVDPLVAYNGGIIDVFGPN 771
>gnl|CDD|225502 COG2952, COG2952, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 183
Score = 31.4 bits (71), Expect = 1.0
Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 32/172 (18%)
Query: 236 SHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKE----- 290
+H+I H K ++ + R L++ IL K N + + ++ E E
Sbjct: 12 AHKIANDFIHSKLLELKAPRELLKELIIGILEKSVKKENALDEQAKELLEENTDEIEFMR 71
Query: 291 -RGENELLSVQRKLSVKE---LMSRLRHN-------NSAVKQDGLSGLLEIITLNPTSVI 339
V+RKL+ +E L R N N + +D L+ +I
Sbjct: 72 MDERQLFWMVKRKLAQEENFHLDWEERCNDLSHQILNKILDED----LIMFSVSEN--LI 125
Query: 340 KSHFSSILDSVSPLMLDISATTR----KAAVKLLSA------MFSQVTEEEL 381
++ +D+ + I KL +F ++ EEEL
Sbjct: 126 RNLIYKSIDTYLKIYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEEL 177
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain,
Gram-positive type. This model describes a polypeptide
chain of DNA polymerase III. Full-length homologs of
this protein are restricted to the Gram-positive
lineages, including the Mycoplasmas. This protein is
designated alpha chain and given the gene symbol polC,
but is not a full-length homolog of other polC genes.
The N-terminal region of about 200 amino acids is rich
in low-complexity sequence, poorly alignable, and not
included n this model [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1213
Score = 31.2 bits (71), Expect = 2.2
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 282 IVIREQLKERGENELLSVQRKLSVKELMSRLR--HNNSAVK-QDGLSGLLEIITLN---- 334
V+ EQLKE+G L + KLS +EL RLR H K Q GL L ++++++
Sbjct: 349 KVMVEQLKEKGITNLEELNNKLSSEELYKRLRPNHIIIYAKNQAGLKNLYKLVSISLTKY 408
Query: 335 -------PTSVIKSHFSSIL 347
S++K + +L
Sbjct: 409 FYTRPRILRSLLKKYREGLL 428
>gnl|CDD|240827 cd12381, RRM4_I_PABPs, RNA recognition motif 4 in type I
polyadenylate-binding proteins. This subfamily
corresponds to the RRM4 of type I poly(A)-binding
proteins (PABPs), highly conserved proteins that bind
to the poly(A) tail present at the 3' ends of most
eukaryotic mRNAs. They have been implicated in theThe
CD corresponds to the RRM. regulation of poly(A) tail
length during the polyadenylation reaction, translation
initiation, mRNA stabilization by influencing the rate
of deadenylation and inhibition of mRNA decapping. The
family represents type I polyadenylate-binding proteins
(PABPs), including polyadenylate-binding protein 1
(PABP-1 or PABPC1), polyadenylate-binding protein 3
(PABP-3 or PABPC3), polyadenylate-binding protein 4
(PABP-4 or APP-1 or iPABP), polyadenylate-binding
protein 5 (PABP-5 or PABPC5), polyadenylate-binding
protein 1-like (PABP-1-like or PABPC1L),
polyadenylate-binding protein 1-like 2 (PABPC1L2 or
RBM32), polyadenylate-binding protein 4-like
(PABP-4-like or PABPC4L), yeast polyadenylate-binding
protein, cytoplasmic and nuclear (PABP or ACBP-67), and
similar proteins. PABP-1 is an ubiquitously expressed
multifunctional protein that may play a role in 3' end
formation of mRNA, translation initiation, mRNA
stabilization, protection of poly(A) from nuclease
activity, mRNA deadenylation, inhibition of mRNA
decapping, and mRNP maturation. Although PABP-1 is
thought to be a cytoplasmic protein, it is also found
in the nucleus. PABP-1 may be involved in
nucleocytoplasmic trafficking and utilization of mRNP
particles. PABP-1 contains four copies of RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains), a
less well conserved linker region, and a proline-rich
C-terminal conserved domain (CTD). PABP-3 is a
testis-specific poly(A)-binding protein specifically
expressed in round spermatids. It is mainly found in
mammalian and may play an important role in the
testis-specific regulation of mRNA homeostasis. PABP-3
shows significant sequence similarity to PABP-1.
However, it binds to poly(A) with a lower affinity than
PABP-1. Moreover, PABP-1 possesses an A-rich sequence
in its 5'-UTR and allows binding of PABP and blockage
of translation of its own mRNA. In contrast, PABP-3
lacks the A-rich sequence in its 5'-UTR. PABP-4 is an
inducible poly(A)-binding protein (iPABP) that is
primarily localized to the cytoplasm. It shows
significant sequence similarity to PABP-1 as well. The
RNA binding properties of PABP-1 and PABP-4 appear to
be identical. PABP-5 is encoded by PABPC5 gene within
the X-specific subinterval, and expressed in fetal
brain and in a range of adult tissues in mammalian,
such as ovary and testis. It may play an important role
in germ cell development. Moreover, unlike other PABPs,
PABP-5 contains only four RRMs, but lacks both the
linker region and the CTD. PABP-1-like and PABP-1-like
2 are the orthologs of PABP-1. PABP-4-like is the
ortholog of PABP-5. Their cellular functions remain
unclear. The family also includes the yeast PABP, a
conserved poly(A) binding protein containing poly(A)
tails that can be attached to the 3'-ends of mRNAs. The
yeast PABP and its homologs may play important roles in
the initiation of translation and in mRNA decay. Like
vertebrate PABP-1, the yeast PABP contains four RRMs, a
linker region, and a proline-rich CTD as well. The
first two RRMs are mainly responsible for specific
binding to poly(A). The proline-rich region may be
involved in protein-protein interactions. .
Length = 79
Score = 28.0 bits (63), Expect = 3.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 18 NFHSTIDPEELFRNIFGQTGGFGGSQ----EGGFSEGFGF---SQPQE 58
N +ID E L R F G ++ E G S+GFGF S P+E
Sbjct: 8 NLDDSIDDERL-REEFSPFGTITSAKVMTDEKGRSKGFGFVCFSSPEE 54
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2. The PB1 domain is a
modular domain mediating specific protein-protein
interaction which play a role in many critical cell
processes such as osteoclastogenesis, angiogenesis,
early cardiovascular development, and cell polarity. A
canonical PB1-PB1 interaction, which involves
heterodimerization of two PB1 domains, is required for
the formation of macromolecular signaling complexes
ensuring specificity and fidelity during cellular
signaling. The interaction between two PB1 domain
depends on the type of PB1. There are three types of PB1
domains: type I which contains an OPCA motif, acidic
aminoacid cluster, type II which contains a basic
cluster, and type I/II which contains both an OPCA motif
and a basic cluster. Interactions of PB1 domains with
other protein domains have been described as
noncanonical PB1-interactions.
Length = 97
Score = 28.3 bits (64), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 292 GENELLSVQRKLSVKELMSRLRH 314
GE ++SV R +S KEL+S+L
Sbjct: 22 GETRIVSVDRSISFKELVSKLSE 44
>gnl|CDD|235087 PRK02925, PRK02925, glucuronate isomerase; Reviewed.
Length = 466
Score = 30.1 bits (69), Expect = 4.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 4 EGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFG 40
G+ G +G+ W F+ D E +TG
Sbjct: 367 LGIPGKMQFGAGWW-FNDQKDGMERQMEQLAETGLLS 402
>gnl|CDD|176740 cd08326, CARD_CASP9, Caspase activation and recruitment domain of
Caspase-9. Caspase activation and recruitment domain
(CARD) similar to that found in caspase-9 (CASP9, MCH6,
APAF3), which interacts with the CARD of apoptotic
protease-activating factor 1 (APAF-1). Caspases are
aspartate-specific cysteine proteases with functions in
apoptosis and immune signaling. Initiator caspases are
the first to be activated following death- or
inflammation-inducing signals. Caspase-9 is the
initiator caspase associated with the intrinsic or
mitochondrial pathway of apoptosis, induced by many
pro-apoptotic signals. Together with APAF-1, it forms
the heptameric 'apoptosome' in response to the release
of cytochrome c from mitochondria. Activated caspase-9
cleaves and activates downstream effector caspases, like
caspase-3, caspase-6, and caspase-7, resulting in
apoptosis. In general, CARDs are death domains (DDs)
associated with caspases. They are known to be important
in the signaling pathways for apoptosis, inflammation
and host-defense mechanisms. DDs are protein-protein
interaction domains found in a variety of domain
architectures. Their common feature is that they form
homodimers by self-association or heterodimers by
associating with other members of the DD superfamily
including PYRIN and DED (Death Effector Domain). They
serve as adaptors in signaling pathways and can recruit
other proteins into signaling complexes.
Length = 84
Score = 27.8 bits (62), Expect = 4.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 430 PHFLDMISSQTRSHEQARQLTVDLDSR 456
P ++ I + +QARQL +DL++R
Sbjct: 33 PDMIEEIQAAGSRRDQARQLLIDLETR 59
>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain
containing protein subfamily; composed of
uncharacterized eukaryotic proteins containing a
GRX-like domain having only one conserved cysteine,
aligning to the C-terminal cysteine of the CXXC motif of
GRXs. This subfamily is predominantly composed of plant
proteins. GRX is a glutathione (GSH) dependent
reductase, catalyzing the disulfide reduction of target
proteins via a redox active CXXC motif using a similar
dithiol mechanism employed by TRXs. GRX has preference
for mixed GSH disulfide substrates, in which it uses a
monothiol mechanism where only the N-terminal cysteine
is required. Proteins containing only the C-terminal
cysteine are generally redox inactive.
Length = 147
Score = 28.7 bits (65), Expect = 5.7
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 84 CTRCHG------EKCEPGTKAQKCHYCNGTGL 109
C+ C+G E +C CN GL
Sbjct: 113 CSECNGSCKVFAENATAAGGFLRCPECNENGL 144
>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional.
Length = 367
Score = 29.2 bits (65), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 262 YKTILPKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQ 321
YK K + F++ V REQ +GE + + +EL L+ +N+ V
Sbjct: 265 YKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYM 324
Query: 322 DGLSGL 327
GL G+
Sbjct: 325 CGLKGM 330
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 29.3 bits (66), Expect = 8.5
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKN--PCT 138
+ C C G+ + ++C C+GTG V + PC
Sbjct: 2 IKKCPECGGKGKIVVGE-EECPVCHGTGFSDDFDPKGVANL---SRETVDLFASFEIPCP 57
Query: 139 TCDGKG 144
C GKG
Sbjct: 58 KCRGKG 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,385,387
Number of extensions: 3261322
Number of successful extensions: 3045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2862
Number of HSP's successfully gapped: 69
Length of query: 676
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 573
Effective length of database: 6,369,140
Effective search space: 3649517220
Effective search space used: 3649517220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)