RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16387
(676 letters)
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 141 bits (359), Expect = 2e-38
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 23/205 (11%)
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIS--TGPFV 118
+ + + +G + L C C G + G +KC CNG G++ ++ GP +
Sbjct: 18 ISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAV-KKCTSCNGQGIKFVTRQMGPMI 76
Query: 119 MR--STCRYCKGSRNLI--KNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSK 174
R + C C G+ ++I K+ C +C+GK +R+ + V V G++DGQ + G++
Sbjct: 77 QRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK-GEAD 135
Query: 175 KE-------IYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFL 227
+ + F+RDG D+ AEI L A+ GG + + D + +
Sbjct: 136 QAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGI 195
Query: 228 EQGSVKLSSHQIMVKTGHKKFVKKE 252
G V + G +K ++ +
Sbjct: 196 VPGEV--------IAPGMRKVIEGK 212
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 105 bits (265), Expect = 2e-27
Identities = 55/94 (58%), Positives = 69/94 (73%)
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMR 120
M+LTF QAA+GVNK+ + IMDTC RC+G+ EPGTK Q CHYC G+G+ETI+TGPFVMR
Sbjct: 8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMR 67
Query: 121 STCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITV 154
STCR C G ++I +PC C G GQ Q++
Sbjct: 68 STCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGP 101
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 86.2 bits (214), Expect = 6e-21
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 71 GVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSR 130
GV K++ + ++ C CHG +PGT+ Q C C+G+G + G F ++ TC +C+G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 131 NLIKNPCTTCDGKGQ 145
LIK+PC C G G+
Sbjct: 61 TLIKDPCNKCHGHGR 75
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 91.5 bits (228), Expect = 2e-20
Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 72/224 (32%)
Query: 1 MGREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEII 60
+ G +S D +++F ++FGQ Q EI
Sbjct: 95 HRNDPGFGRQRQTHEQ--SYSQQDFDDIFSSMFGQQAHQRRRQ------HAARGHDLEIE 146
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMR 120
+ + + + + G K
Sbjct: 147 VAVFLEETLAEQTRTI--SYNLPVYNVFGMIESETPK----------------------- 181
Query: 121 STCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKK----- 175
T+ V +PAGV DGQ +R+ G+
Sbjct: 182 ------------------------------TLNVKIPAGVVDGQRIRLK-GQGTPGENGG 210
Query: 176 ---EIYITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
++++ + +F+ G ++ ++ +A LG + +P
Sbjct: 211 PNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVP 254
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 74.9 bits (185), Expect = 8e-16
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 19/135 (14%)
Query: 126 CKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKE--------I 177
G R IK + + V + G +DG + + G+ +E +
Sbjct: 18 YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYS-GEGDQESPGTSPGDL 76
Query: 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSH 237
+ + + F RD + I L +A+ G T + + D++ +++
Sbjct: 77 VLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTL-DNRN--------LQIPIK 127
Query: 238 QIMVKTGHKKFVKKE 252
+I V +K V E
Sbjct: 128 EI-VNPKTRKIVPNE 141
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 72.6 bits (179), Expect = 4e-15
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 22/135 (16%)
Query: 126 CKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVR--------MNVGKSKKEI 177
G + K G +++ I + + G + G + G+ K +
Sbjct: 15 FVGKKKSFK---IGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRK-TL 70
Query: 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSH 237
+ + F+RDG D+ +S +++LG + I I D +T + LS
Sbjct: 71 QFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTI-DGRT--------LPLSRV 121
Query: 238 QIMVKTGHKKFVKKE 252
Q V+ +
Sbjct: 122 QP-VQPSQTSTYPGQ 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 5e-14
Identities = 83/553 (15%), Positives = 163/553 (29%), Gaps = 148/553 (26%)
Query: 175 KEIYITFRVE-KSDIFERDGPD----IHSNAEISLSQAVLGGTIRIPGIYDDQTVLF--- 226
K+I F + +D D I S EI ++ + G LF
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTL----RLFWTL 71
Query: 227 LEQGSVKLSSHQIMVKTGHK--------KFVKKEKARVKLRKSYKTILPKGQNVTNTEFK 278
L + Q V+ + +++ + + Y + N N F
Sbjct: 72 LSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFA 127
Query: 279 VKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAVKQDGLSG----LLEIITLN 334
K V R Q + +++ + LR + V DG+ G + +
Sbjct: 128 -KYNVSRLQPYLK-------------LRQALLELRPAKN-VLIDGVLGSGKTWVALDVCL 172
Query: 335 PTSVIKSHFSSIL-------DSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEI 387
V I +S ++ + + S + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 388 VVRYLACAMSHLDAGVREDSLLIID-V----LLE----QCPIL-TANYRSLLPHFLDMIS 437
+R L + + E+ LL++ V C IL T ++ + D +S
Sbjct: 233 ELRRLLKSKPY------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV----TDFLS 282
Query: 438 SQTRSHEQARQLTVDLDSRTTTTVFRIKVLTRLRSM-LLAIVHLFKTKSSSSNVSREIVV 496
+ T +H + LD + LT LL ++ RE++
Sbjct: 283 AATTTH-------ISLDHHS-------MTLTPDEVKSLLLKY----LDCRPQDLPREVLT 324
Query: 497 TSSTRHVPLYCSQQPGKSFIYDKKITSNETLDDVQNYTQMLMPLLMETFIEVV--ADRKQ 554
T+ P S I + T D+ ++ + ++E+ + V+ A+ ++
Sbjct: 325 TN-----PRRLSI------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 555 AGSDIVVEAVALLQCVVDIILNVLHILQQSGTVGVSWFKQTY--ARSIREHLYKGRFPYT 612
+ + +++ I +L ++ WF + L+K
Sbjct: 374 -----MFDRLSVFPPSAHIPTILLSLI---------WFDVIKSDVMVVVNKLHK------ 413
Query: 613 VGSWGSTPNKNAKQRRKDSEAALKLLDSSLDLHCTGQNL-SL---------CLLAFQLNI 662
S K K+ + + L+L +N +L F +
Sbjct: 414 ----YSLVEKQPKEST------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 663 DTPVTLD-YVLRH 674
P LD Y H
Sbjct: 464 LIPPYLDQYFYSH 476
Score = 42.9 bits (100), Expect = 4e-04
Identities = 67/430 (15%), Positives = 137/430 (31%), Gaps = 127/430 (29%)
Query: 222 QTVLF-LEQGSVKLSSHQIMVKTGHKKFVKKEKARVKLRKSYKT---ILPKGQNVTNTE- 276
Q +L+ ++ S H +K ++ E R+ K Y+ +L NV N +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKA 258
Query: 277 ---F----------------------KVKRIVIREQLKERGENELLSVQRK---LSVKEL 308
F I + +E+ S+ K ++L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 309 -----------MS----RLRHNNSA---VKQDGLSGLLEII-----TLNPTSVIKSHFSS 345
+S +R + K L II L P + + F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDR 377
Query: 346 ILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVRE 405
+ SV P I LLS ++ V + ++ +VV L S ++ +E
Sbjct: 378 L--SVFPPSAHIPT-------ILLSLIWFDVIKSDV----MVVVNKL-HKYSLVEKQPKE 423
Query: 406 DSLLIIDVLLE---QCPILTANYRSLLPHFLDMISSQTRSHEQARQLTVDLDS------- 455
++ I + LE + A +RS++ H+ + ++ + + LD
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 456 ---RTT-----TTVFRIKVLTRLRSMLLAIVHLF---KTKSSSSNVSREIVVTSSTRHVP 504
+ T+FR V R F K + S+ + + ++ + +
Sbjct: 479 HHLKNIEHPERMTLFR-MVFLDFR---------FLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 505 LYCSQQPGKSFIYDKKITSNETLDDVQNYTQMLMPLLMET-FIEVVADRKQ-----AGSD 558
Y K +I D ++ + ++ + L+ + + +++ +
Sbjct: 529 FY------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL----RIALMAEDEA 578
Query: 559 IVVEAVALLQ 568
I EA +Q
Sbjct: 579 IFEEAHKQVQ 588
Score = 41.8 bits (97), Expect = 8e-04
Identities = 60/396 (15%), Positives = 113/396 (28%), Gaps = 114/396 (28%)
Query: 336 TSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQV-TEEELAPLFEIVVRYLAC 394
T + + IL + D A K + M + ++EE+ I+
Sbjct: 11 TGEHQYQYKDIL----SVFED--AFVDNFDCKDVQDMPKSILSKEEID---HII------ 55
Query: 395 AMSHLDAGVREDSLLIIDVLLEQ---------CPILTANYRSLLPHFL-DMISSQTRSHE 444
+G + LL + +L NY+ FL I ++ R
Sbjct: 56 MSKDAVSGTL----RLFWTLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPS 106
Query: 445 QARQLTVDLDSRTTTT--------VFRIKVLTRLRSMLLA-------IVH-LFKT-KSS- 486
++ ++ R V R++ +LR LL ++ + + K+
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 487 SSNVSREIVVTSSTRHVPLYCSQQPGKSFIY----DKKITSNETLDDVQN-YTQMLMPLL 541
+ +V V + K I+ + L+ +Q Q+
Sbjct: 167 ALDVCLSYKVQ----------CKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 542 -----METFIEVVADRKQAGSDIVVEAV---ALLQCVVDIILNVLHILQQSGTVGVSWFK 593
+ + ++ LL V+ NV Q+ + F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLL---NV-----QNAKA-WNAFN 263
Query: 594 -------QTYARSIREHL---YKGRFPYTVGSWGSTPNKNAKQRRKDSEAAL-KLLDSSL 642
T + + + L S TP + ++ L K LD
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------DEVKSLLLKYLDCRP 315
Query: 643 -DL---HCTGQNLSLCLLAFQLNIDTPVTLDYVLRH 674
DL T L ++A + D T D +H
Sbjct: 316 QDLPREVLTTNPRRLSIIAESI-RDGLATWDN-WKH 349
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 64.6 bits (158), Expect = 3e-12
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 126 CKGS--RNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM------NVGKSKKEI 177
G + I + DGK + + +T+ V G ++G + +I
Sbjct: 17 YSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADI 76
Query: 178 YITFRVEKSDIFERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSH 237
+ + +IF+RDG D+ A ISL +A+ G T+ +P + D + + V
Sbjct: 77 VFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTL--DGRTIPVVFKDV----- 129
Query: 238 QIMVKTGHKKFVKKE 252
++ G ++ V E
Sbjct: 130 ---IRPGMRRKVPGE 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 6e-10
Identities = 112/601 (18%), Positives = 199/601 (33%), Gaps = 207/601 (34%)
Query: 109 LETISTGPFVMR----------STCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPA 158
++ ST P + T + S+ L + QF + + P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQ-L----------QEQFNK--ILPEPTEG 47
Query: 159 GVEDGQTVRMNVGKSKKEI------YITFRVEKSDI-------------FERD---GPDI 196
D + + E+ Y++ VE S + FE G DI
Sbjct: 48 FAADDEP------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 197 HSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVK--LSSHQIMVKTGHKK-----F- 248
H+ A L Q ++ T L + +K +++ + + KK F
Sbjct: 102 HALA-AKLLQ-------------ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 249 -VKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKERGE--NELLSVQRKLSV 305
V + A++ I GQ T+ F E+L++ + + L+ K S
Sbjct: 148 AVGEGNAQL-----V-AIFG-GQGNTDDYF--------EELRDLYQTYHVLVGDLIKFSA 192
Query: 306 KELMSRLRHNNSAVK--QDGLSGLLEIITLNPTSVIKSHFSSILDS--VS-PL------- 353
+ L +R A K GL+ +LE + NP++ + L S +S PL
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLN-ILEWLE-NPSNTPDKDY---LLSIPISCPLIGVIQLA 247
Query: 354 ---------------MLDI--SATTRKAAVKLLSAMFSQVTEEE---------LAPLFEI 387
+ AT + + + ++ E + LF I
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 388 VVR-YLACAMSHLDAGVREDSLLIIDVLLEQ-----CPILTANYRSLLPHFLDMISSQTR 441
VR Y A + L + EDS LE P+L+ +L + ++T
Sbjct: 307 GVRCYEAYPNTSLPPSILEDS-------LENNEGVPSPMLSI--SNLTQEQVQDYVNKTN 357
Query: 442 SH-EQARQLTVDL-DSRTTTTVFRIKVLT-RLRSMLLAIVHLFKTKSSS----SNV---S 491
SH +Q+ + L + V++ +S+ + L K K+ S S +
Sbjct: 358 SHLPAGKQVEISLVNGAKN---L---VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 492 REIVVTSSTR--------HVPLYCSQQPGKSFIYDKKITSNETLDDVQNYTQMLMPLLME 543
R++ S R H L P I + +N + + + +P+ +
Sbjct: 412 RKLKF--SNRFLPVASPFHSHLL---VPASDLINKDLVKNNVSFNA----KDIQIPVY-D 461
Query: 544 TFIEVVADRKQAGSDIVVEAVALLQCVVDIIL------------NVLHILQ--QSGTVGV 589
TF D GSD+ V + ++ + +VD I+ HIL G G+
Sbjct: 462 TF-----D----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 590 S 590
Sbjct: 513 G 513
Score = 41.2 bits (96), Expect = 0.001
Identities = 52/351 (14%), Positives = 110/351 (31%), Gaps = 139/351 (39%)
Query: 309 MSR-LRHNNSAVKQ-----D-------GLSGLLEIITLNPTSVIKSHFS-----SILDSV 350
M L + A + D G S +L+I+ NP ++ HF I ++
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDIVINNPVNLT-IHFGGEKGKRIRENY 1688
Query: 351 SPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLI 410
S ++ + + K+ F ++ E + F +
Sbjct: 1689 SAMIFETIVDGKLKTEKI----FKEINEHSTSYTFR---------------SEKG----- 1724
Query: 411 IDVLLE-----QCP-ILT---ANYRSLLPHFLDMISSQTRS----H---E------QARQ 448
LL Q P + A + L L + H E A
Sbjct: 1725 ---LLSATQFTQ-PALTLMEKAAFEDLKSKGL----IPADATFAGHSLGEYAALASLADV 1776
Query: 449 LTVDLDSRTTTTVFRIKVLTRLRSMLLAIVHLFKTKSSSSNVSREIVVTSSTRHVPLYCS 508
++++ ++V+ R M + + V R+ + S+ + +
Sbjct: 1777 MSIE-SL--------VEVV-FYRGMTMQVA-----------VPRDELGRSNYGMIAI--- 1812
Query: 509 QQPGKSFIYDKKITSNETLDDVQNYTQMLMPLLMET--FIEVV---ADRKQAGSDIVV-- 561
PG ++ ++ + + +Q + + T +E+V + +Q V
Sbjct: 1813 -NPG-------RVAASFSQEALQYVVER---VGKRTGWLVEIVNYNVENQQ----YVAAG 1857
Query: 562 EAVALLQCVVDIILNVLHI-------LQQSGTVGVSWFKQTYARSIREHLY 605
+ A L V + +LN + + LQ+S ++ + HL+
Sbjct: 1858 DLRA-LDTVTN-VLNFIKLQKIDIIELQKSLSL----------EEVEGHLF 1896
Score = 37.0 bits (85), Expect = 0.022
Identities = 49/297 (16%), Positives = 76/297 (25%), Gaps = 119/297 (40%)
Query: 2 GREGMGGAGNYGSANWNFHSTIDPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIM 61
G +G NY + F + +D + IF + S + F + + +
Sbjct: 1678 GEKGKRIRENYSAMI--FETIVDGKLKTEKIFKEINEH--------STSYTFRSEKGL-L 1726
Query: 62 KLT-FTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPF-VM 119
T FTQ A + + F +
Sbjct: 1727 SATQFTQPA----------LT-----------------------------LMEKAAFEDL 1747
Query: 120 RSTCRYCKGSRNLIKNPCTTCDGKGQFA---------------------------QR-QT 151
+S KG LI T FA R T
Sbjct: 1748 KS-----KG---LIPADAT-------FAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 152 ITVPVPAGVEDGQTVRM---NVGKSKKEIYITFRVEK-SDIFERDGPDIHSNAEI----- 202
+ V VP M N G+ + +F E + ER G EI
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGR----VAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 203 SLSQAVLGGTIRIPGIYDDQTVL-FLEQGSVKLSSHQIMVKTGHKKFVKKEKARVKL 258
Q V G +R + VL F++ + + Q + E+ L
Sbjct: 1849 ENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDIIELQKSLSL--------EEVEGHL 1895
Score = 34.3 bits (78), Expect = 0.16
Identities = 52/281 (18%), Positives = 76/281 (27%), Gaps = 99/281 (35%)
Query: 23 IDPEELFRNIFGQTGGFGG-------SQEGGFSEGFGFSQPQEIIMKLTFTQAARGV--- 72
P EL + G TG G ++ + F + + F R
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWES---FFVSVRKAITVLFFIGVRCYEAY 314
Query: 73 -NKDVVLKIMDTCTRCHGEKCEPG--------TKAQ---KCHYCNGTGLET----IS--T 114
N + I++ + E P T+ Q + N IS
Sbjct: 315 PNTSLPPSILEDSLE-NNEG-VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 115 GP--FVM----RSTCRYCKGSRNLIKNPCTTCDGKGQ----FAQRQ--------TITVP- 155
G V+ +S R K P G Q F++R+ + P
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRK-AKAP----SGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 156 -----VPAG---VED--GQTVRMNVGKSKKEIYITF-----RVEKSDIFER--------- 191
VPA +D V N + +Y TF RV I ER
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 192 ---------------D-GPDIHSNAEISLSQAVLGGT-IRI 215
D GP S L+ GT +R+
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLG-VLTHRNKDGTGVRV 527
Score = 31.6 bits (71), Expect = 1.0
Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 48/125 (38%)
Query: 19 FHSTI--DPEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKL----TFTQA-ARG 71
FHS + +L + F+ +++ TF + R
Sbjct: 427 FHSHLLVPASDLI-------------NKDLVKNNVSFNAKD---IQIPVYDTFDGSDLRV 470
Query: 72 VNKDVVLKIMD--TCTRCHGEKCE-----------PG--------TKAQKCHYCNGTGLE 110
++ + +I+D E PG T K +GTG+
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK----DGTGVR 526
Query: 111 TISTG 115
I G
Sbjct: 527 VIVAG 531
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 52.8 bits (125), Expect = 3e-07
Identities = 41/244 (16%), Positives = 75/244 (30%), Gaps = 19/244 (7%)
Query: 356 DISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLL 415
D+S R+AA K L A+ S E L ++ V L + V+ D LL
Sbjct: 344 DMSWKVRRAAAKCLDAVVS-TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402
Query: 416 EQCPILT----------------ANYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTT 459
+Q + +S +P+ + + Q + +
Sbjct: 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV 462
Query: 460 TVFRIKVLTRLRSMLLAIVHLFKTKSSSSNVSREIVVTSSTRHVPLYCSQQPGKSFIYDK 519
V + + ++ I+ KSSSSN+ + + S + S Q +
Sbjct: 463 NVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL--SCLYVILCNHSPQVFHPHVQAL 520
Query: 520 KITSNETLDDVQNYTQMLMPLLMETFIEVVADRKQAGSDIVVEAVALLQCVVDIILNVLH 579
+ D L+ + ++V+ Q S + L L
Sbjct: 521 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 580
Query: 580 ILQQ 583
I Q+
Sbjct: 581 IDQE 584
Score = 48.9 bits (115), Expect = 5e-06
Identities = 24/185 (12%), Positives = 69/185 (37%), Gaps = 6/185 (3%)
Query: 254 ARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLR 313
A +K + + +++ + I + R L++ + + L+ +L
Sbjct: 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI-LTCLLPQLT 185
Query: 314 HNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMF 373
AV++ + L ++ V +L L + S +T + ++ ++A+
Sbjct: 186 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE---LSKNDSMSTTRTYIQCIAAIS 242
Query: 374 SQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP-ILTANYRSLLPHF 432
Q + E ++ + + D +RE + + + +CP + + +++
Sbjct: 243 RQA-GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301
Query: 433 LDMIS 437
L ++
Sbjct: 302 LKYLT 306
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 50.8 bits (121), Expect = 4e-07
Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 1/132 (0%)
Query: 256 VKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHN 315
L K + +FK K+ + L+E + S + + ++ L +
Sbjct: 86 KGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK 145
Query: 316 NSAVKQDGLSGLLEIITL-NPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFS 374
N +VK + + +T PT++ K + S+ + + T R ++ + L +
Sbjct: 146 NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205
Query: 375 QVTEEELAPLFE 386
+ ++ + PL
Sbjct: 206 LMGDKAVTPLLA 217
Score = 34.6 bits (79), Expect = 0.078
Identities = 20/145 (13%), Positives = 46/145 (31%), Gaps = 11/145 (7%)
Query: 343 FSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAG 402
S + + + T RK ++++L + + + E +V +
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 403 VREDSLLIIDVLLEQCPILTANYRS-LLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTV 461
+ + + +L + +NY S +P L+ + + A +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTA----------LREAI 122
Query: 462 FRIKVLTRLRSMLLAIVHLFKTKSS 486
I T L + +IV K+
Sbjct: 123 DAIYASTSLEAQQESIVESLSNKNP 147
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 43.7 bits (104), Expect = 1e-05
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 187 DIFERDGPDIHSNAEISLSQAVLGGTIRIP 216
+F+ G ++ ++ +A LG + +P
Sbjct: 5 PLFDIVGHNLEIVLPLAPWEAALGAKVTVP 34
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 43.0 bits (102), Expect = 3e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 189 FERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVKTGHKKF 248
F+RDG D+ AEI L A+ GG + + D + + G V + G +K
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEV--------IAPGMRKV 53
Query: 249 VKKE 252
++ +
Sbjct: 54 IEGK 57
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 42.0 bits (98), Expect = 3e-04
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 18/166 (10%)
Query: 289 KERGE------NELLSVQRKLSVK-----ELMSRLRH-----NNSAVKQDGLSGLLEIIT 332
K+R E + +LS +KL L+ H N + I
Sbjct: 31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD 90
Query: 333 -LNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRY 391
L K + S + + + + +A K L + + E +++
Sbjct: 91 KLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150
Query: 392 LACAMSHLDAGVREDSLLIIDVLLEQCPIL-TANYRSLLPHFLDMI 436
+ M H +R + + + +++ + R L + ++
Sbjct: 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIV 196
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 36.3 bits (84), Expect = 0.034
Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 19/210 (9%)
Query: 305 VKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKA 364
+ L L+ + V++ + ++ +N V F L L+ D +
Sbjct: 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRD---LIADSNPMVVAN 179
Query: 365 AVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTAN 424
AV LS + L L + L A++ + + I+D L P
Sbjct: 180 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQ---IFILDCLSNYNPKDDRE 236
Query: 425 YRSLLPHFLDMISSQTRS--HEQARQLTVDLDSRTTTTVFRIKVLTRLRSMLLAIVHLFK 482
+S+ +S + + L L+ + + +L +L L+ +
Sbjct: 237 AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL----- 291
Query: 483 TKSSSSNVSREIVVTSSTRHVPLYCSQQPG 512
S + + + R++ L ++P
Sbjct: 292 --LSGEPEVQYVAL----RNINLIVQKRPE 315
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.060
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 625 KQRRKDSEAALKLLDSSLDLHCTGQNLSLCLLAFQLNID 663
KQ ALK L +SL L+ S LA + ++
Sbjct: 19 KQ-------ALKKLQASLKLYADD---SAPALAIKATME 47
Score = 32.2 bits (72), Expect = 0.28
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 32/59 (54%)
Query: 302 KLSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISAT 360
K ++K+L + L+ L DS +P L I AT
Sbjct: 19 KQALKKLQASLK-------------LYA-----D------------DS-AP-ALAIKAT 45
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized
tetraheme cytochrome C, electron transport; HET: HEM;
0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB:
1m1p_A* 1m1r_A*
Length = 91
Score = 30.9 bits (69), Expect = 0.28
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 81 MDTCTRCHGEKCEPG---TKAQKCHYCNGTGLE----TISTGPFVMRSTCRYCKGSRNLI 133
C CH + + +C C+G E ++ + C
Sbjct: 12 SGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQ 71
Query: 134 KNPCTTCDGKGQFAQ 148
K C +C G+ +
Sbjct: 72 KPTCESCHDDGRTSA 86
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 33.3 bits (75), Expect = 0.30
Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 26/244 (10%)
Query: 356 DISATTRKAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLL 415
D KAA L + + ++ + + + ++ + D R+ +++ +L
Sbjct: 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI----KNPDWRYRDAAVMAFGCIL 394
Query: 416 EQCP--ILTANYRSLLPHFLDMISSQTRSHEQARQLTVDLDSRTTTTVFRIKVLTR-LRS 472
E L +P ++++ R R + + L
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMKDP---SVVVRDTAAWTVGRICELLPEAAINDVYLAP 451
Query: 473 MLLAIVHLFKTK--------SSSSNVSREIVVTSSTRHVPLYCSQQPGKSFIYDKKITSN 524
+L ++ + + S+++ + + S
Sbjct: 452 LLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL 511
Query: 525 ETLDDVQNYTQMLMPLLMETFIEVVADRKQAGSDIVVEAVALLQCVVDIILNVL-HILQQ 583
ET D + L E+ +E+V + + +Q +I+ L +LQ
Sbjct: 512 ETTDRPDGHQNNLRSSAYESLMEIVK-------NSAKDCYPAVQKTTLVIMERLQQVLQM 564
Query: 584 SGTV 587
+
Sbjct: 565 ESHI 568
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap,
tryptophan RNA-binding attenuation PROT transcription
attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Length = 53
Score = 28.9 bits (64), Expect = 0.60
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 119 MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITV 154
+ +TC C GS PC C GKG Q T+
Sbjct: 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTAQGSTL 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 32.1 bits (72), Expect = 0.66
Identities = 32/303 (10%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 303 LSVKELMSRLRHNNSAVKQDGLSGLLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTR 362
++ E + + + Q L ++ + + ++L + D
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIK--DVVPNLLNLLTRQNEDPEDDDWNVS 348
Query: 363 KAAVKLLSAMFSQVTEEELAPLFEIVVRYLACAMSHLDAGVREDSLLIIDVLLEQCP--I 420
+A L L P+ E V + + + + RE +++ +++
Sbjct: 349 MSAGACLQLFAQNCGNHILEPVLEFVEQNI----TADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 421 LTANYRSLLPHFLDMISSQTRSHEQAR--------QLTVDLDSRTTTTVFRIKVLTRLRS 472
T LP L++++ Q Q + ++ + V+
Sbjct: 405 RTYYVHQALPSILNLMNDQ---SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI 461
Query: 473 MLL-----------AIVHLFKTKSSSSNVSR----EIVVTSSTRHVPLYCSQQPGKSFIY 517
L I++L + + ++ +V ++ ++ +
Sbjct: 462 GLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAF 521
Query: 518 DKKITSNETL-DDVQNYTQMLMPLLMETFIEVVADRKQAGSDIVVEAVALLQCVVDIILN 576
T E D V + + +M+ + ++ + + +++ LQ + +L
Sbjct: 522 SALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLA 581
Query: 577 VLH 579
+
Sbjct: 582 AVI 584
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit
protein; transcription regulation; 2.80A {Bacillus
subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Length = 53
Score = 28.9 bits (64), Expect = 0.68
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 119 MRSTCRYCKGSRNLIKNPCTTCDGKGQFAQRQTITV 154
+ C C+ + + PC C GKG Q T+
Sbjct: 8 LEVACPKCERAGEIEGTPCPACSGKGVILTAQGYTL 43
>1sp3_A Cytochrome C, putative; octaheme, oxidoreductase; HET: HEM; 2.20A
{Shewanella oneidensis} SCOP: a.138.1.3
Length = 443
Score = 31.6 bits (70), Expect = 0.81
Identities = 15/117 (12%), Positives = 22/117 (18%), Gaps = 23/117 (19%)
Query: 83 TCTRCHGE-------------KCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGS 129
C CH E + E + + C C
Sbjct: 21 QCLTCHEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAISSNEPRCTSCHAG 80
Query: 130 RNLIKNP----------CTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKE 176
N C C + P D + NVG ++
Sbjct: 81 YGWKDNTFDFKDKTKVDCLICHDTTGTYVKDPAGAGEPMAKLDLAKIAQNVGAPVRD 137
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 31.7 bits (69), Expect = 0.82
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 60 IMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTK----AQKCHYCNGTGLETISTG 115
M L F + D+ C CH E+ + G K +C C+ S
Sbjct: 94 KMSLKFMRLEDTTAADLKNIYHANCIGCHTEQAKAGKKTGPQDGECRSCHNPKPMASSWK 153
Query: 116 PFVMRSTCRYCKGSRNLI------KNPCTTC 140
+ + + + I + C C
Sbjct: 154 QIGLDKSLHFRHVAAKAIAPVNDPQKNCGAC 184
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 31.1 bits (71), Expect = 1.1
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 233 KLSSHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKERG 292
++ SH++M++ G +++E A + Y LP G V K+++IV RE+ G
Sbjct: 39 EIVSHRLMLRAG---MLRQEAAGI-----Y-AWLPLGHRVLK---KIEQIV-REEQNRAG 85
Query: 293 ENELL 297
ELL
Sbjct: 86 AIELL 90
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 29.9 bits (66), Expect = 1.2
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 18/91 (19%)
Query: 55 QPQEIIMKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST 114
+ E + K+V ++ C C + G+ + C C
Sbjct: 29 ETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCK--------- 79
Query: 115 GPFVMRSTCRYCKGSRNLIKNP----CTTCD 141
++ C C + + C C
Sbjct: 80 -----KNVCTKCGVETSNNRPHPVWLCKICL 105
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D
bond, glycoprotein, membrane, secreted, signal-anchor,
transmembrane, apoptosis; 2.45A {Homo sapiens} PDB:
3mi8_D 3mhd_D
Length = 176
Score = 30.5 bits (68), Expect = 1.3
Identities = 14/79 (17%), Positives = 19/79 (24%), Gaps = 22/79 (27%)
Query: 81 MDTCTRCH-GEKCEPGTKAQKCHYCNGTGLETIST------------GPF-VMRSTCRYC 126
+ RC G G + G G+ T G F S+ C
Sbjct: 82 HNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQC 141
Query: 127 KGSRNLIKNPCTTCDGKGQ 145
+ P C G
Sbjct: 142 Q--------PHRNCTALGL 152
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 30.9 bits (67), Expect = 1.5
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVM----------RSTCRYCKGSRN 131
C CH G+ A C+ T G FV ++C C ++
Sbjct: 317 GNCVTCHHPTQTGGSLAACGVACHTT--TGSKDGNFVTTAQSAHQLGVTTSCVGCHTTQA 374
Query: 132 LIKNPCTTCDGKGQFAQRQT 151
+ C C Q
Sbjct: 375 NARKECAGCHAPMQKTALSQ 394
Score = 29.3 bits (63), Expect = 4.6
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 83 TCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTC 140
C CH + C C+ G T +G + R ++ L
Sbjct: 379 ECAGCHAPMQKTALSQNSCIQCHEAGFPT--SGTQTLGKEEREATAAKILAAKDEKPK 434
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 28.5 bits (64), Expect = 1.6
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 27/83 (32%)
Query: 84 CTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRS----------TCRYCK---GSR 130
+C + P KC C + I G + TC CK G+
Sbjct: 6 SGKCTTREDSP-----KCKGCF----KAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG 56
Query: 131 NLI----KNPCTTCDGKGQFAQR 149
+ C TC +FA
Sbjct: 57 SFFPKGEDFYCVTCHET-KFASG 78
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 30.4 bits (69), Expect = 2.4
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 19/58 (32%)
Query: 177 IYITFRVEKSDIFERDGPDIHS--------NAEISLSQAV-----LGGTIRIPGIYDD 221
Y V+ D D HS L + G I +PGIYD+
Sbjct: 225 SYFMVEVKCRD------QDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDE 276
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 29.8 bits (66), Expect = 2.5
Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 8/76 (10%)
Query: 82 DTCTRC-HGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYC-KGSRNLIKN---- 135
C G + + + G + C C G + + +
Sbjct: 108 PRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDK 167
Query: 136 --PCTTCDGKGQFAQR 149
P T C G+
Sbjct: 168 CKPWTNCTLLGKLEAH 183
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 29.9 bits (65), Expect = 2.7
Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTC 140
D C CH CH G T M +T + N C +C
Sbjct: 45 DNCETCHHT--GDPVSCSTCHTVEGKAEGNYITLDRAMHATNIAKRAKGN-TPVSCVSC 100
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 29.7 bits (64), Expect = 3.0
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 10/89 (11%)
Query: 73 NKDVVLKIMDTCTRCHG-------EKCEPGTKAQKCHYCNGTGLETIS--TGPFVMRSTC 123
N C +CH +A H + + + T F R
Sbjct: 223 NGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGS 282
Query: 124 RYCKGSRNLIKNPCTTC-DGKGQFAQRQT 151
+ C C +GK F+
Sbjct: 283 APATMADMEKGKSCGVCHNGKDAFSVADD 311
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 29.5 bits (65), Expect = 3.4
Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 16/76 (21%)
Query: 82 DTCTRCHGEKCEPGTKAQKCHYCNGTGLETIST-------GPFV-MRSTCRYCKGSRNLI 133
C P T G ET G F + S+ CK
Sbjct: 93 PPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCK------ 146
Query: 134 KNPCTTCDGKGQFAQR 149
T C + +
Sbjct: 147 --AYTDCLSQNLVVIK 160
>2hky_A Ribonuclease 7; RNAse, antimicrobial activity, hydrolase; NMR {Homo
sapiens}
Length = 129
Score = 28.3 bits (63), Expect = 3.5
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 20/79 (25%)
Query: 87 CHGEKCEPGTKAQKCHYCNGTGLETISTGPFVM---------RSTCRYCKGSRNLIKNPC 137
C K + CH S GP + CRY + K+
Sbjct: 56 CQTPKIACKNGDKNCH---------QSHGPVSLTMCKLTSGKYPNCRY--KEKRQNKSYV 104
Query: 138 TTCDGKGQFAQRQTITVPV 156
C + +Q VPV
Sbjct: 105 VACKPPQKKDSQQFHLVPV 123
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 3.7
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 7/28 (25%)
Query: 120 RSTCRYCKG-SRNLIKNP------CTTC 140
TC CK +++ C C
Sbjct: 21 VLTCPECKVYPPKIVERFSEGDVVCALC 48
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 29.8 bits (64), Expect = 3.8
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 15/93 (16%)
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKA-------QKCHYCNGTGLETIS 113
M L F + ++ C CH + + G K + CH + S
Sbjct: 91 MSLKFMRLDDNSAAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSA--ASS 148
Query: 114 TGPFVMRSTCRYCKGSRNLIKNP------CTTC 140
+ Y + IK C C
Sbjct: 149 WKEIGFDKSLHYRHVASKAIKPVGDPQKNCGAC 181
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 28.5 bits (63), Expect = 4.3
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 83 TCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCDG 142
T T+ +C GT Y G G F + CK P T C
Sbjct: 76 TATQDTVCRCRAGT-QPLDSYKPGVDCAPCPPGHFS-PGDNQACK--------PWTNCTL 125
Query: 143 KGQFAQR 149
G+ +
Sbjct: 126 AGKHTLQ 132
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 29.2 bits (66), Expect = 5.0
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 19/58 (32%)
Query: 177 IYITFRVEKSDIFERDGPDIHS--------NAEISLSQAVLG-----GTIRIPGIYDD 221
Y VE SD D+HS A L + G I IPGI D
Sbjct: 218 CYFFIEVECSD------KDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKILIPGINDA 269
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 28.7 bits (64), Expect = 5.0
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 21/118 (17%)
Query: 125 YCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKEIYITFR-- 182
YC+ C CD +T + + + G S+K IYI FR
Sbjct: 28 YCRTVIPGATWDCIHCDATEDLKIIKTWS-----TLIYDTNAMVARGDSEKTIYIVFRGS 82
Query: 183 -----------VEKSDIFERDGPDIHS---NAEISLSQAVLGGTIRIPGIYDDQTVLF 226
G +H ++ + ++ + Y V
Sbjct: 83 SSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAV 140
>2rj2_A F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, lectin, UBL
conjugation pathway; 1.70A {Mus musculus} PDB: 1umh_A
2e33_A* 1umi_A*
Length = 185
Score = 28.5 bits (63), Expect = 5.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 123 CRYCKGSRNLIKNPC 137
K RNL++NPC
Sbjct: 6 YFLSKRRRNLLRNPC 20
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 28.3 bits (62), Expect = 5.8
Identities = 13/67 (19%), Positives = 16/67 (23%), Gaps = 11/67 (16%)
Query: 83 TCTRCHGE-KCEPGT-KAQKCHYCNGTGLETISTGPFV-MRSTCRYCKGSRNLIKNPCTT 139
C C PG Q T + G F S+ C+ T
Sbjct: 93 EIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCR--------KHTN 144
Query: 140 CDGKGQF 146
C G
Sbjct: 145 CSVFGLL 151
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces
lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A
1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Length = 269
Score = 28.3 bits (63), Expect = 7.2
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 125 YCKGSRNLIKNPCTTCDGKG--QFAQRQTITVPVPAGVEDGQTV-RMNVGKSKKEIYITF 181
YC + + TC G + + + G + + + K I ++F
Sbjct: 21 YCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSF 80
Query: 182 R 182
R
Sbjct: 81 R 81
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 28.7 bits (65), Expect = 7.3
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 236 SHQIMVKTGHKKFVKKEKARVKLRKSYKTILPKGQNVTNTEFKVKRIVIREQLKERGENE 295
SHQI+++ G ++++ A + Y + LP V K+K I +RE+ ++ E
Sbjct: 22 SHQILLRAG---YIRQVAAGI-----Y-SYLPLANRVLE---KLKTI-MREEFEKIDAVE 68
Query: 296 LL 297
+L
Sbjct: 69 ML 70
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 28.3 bits (63), Expect = 7.8
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 33 FGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQAARGVNKDVVLKIM---DTCTRCH 88
G + FG I+ L + VN + + C+ CH
Sbjct: 72 LEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCH 130
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 28.8 bits (63), Expect = 7.8
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 6/123 (4%)
Query: 327 LLEIITLNPTSVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQVTEEELAPLFE 386
LL+ V+K SIL L L F +
Sbjct: 382 LLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVG 441
Query: 387 IVVRYLACAMSHLDAGVREDSLLIIDVLLEQCPILTANYRSLLPHFLDMISSQTRSHEQA 446
+V ++ C+ + + D LL L+ + + LD + + S +Q
Sbjct: 442 ALVTHV-CSGTEAEVDTALDVLLE---LIVLNASAMRLNAAFVKGILDYLENM--SPQQI 495
Query: 447 RQL 449
R++
Sbjct: 496 RKI 498
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding
domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha
magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana
tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A*
1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Length = 550
Score = 28.6 bits (63), Expect = 8.3
Identities = 12/115 (10%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 494 IVVTSSTRHVPLYCSQQPGKSFIYDKKITSNETLDDVQNYTQMLMPLLMETFIEVVAD-R 552
+++ Y + + +++ + +D + +Y ++ +++ + + +
Sbjct: 297 SMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS 356
Query: 553 KQAGSDIVVEAVALLQCVVDIILNVLHILQQSGTVGVSWFKQTYARSIREHLYKG 607
S IV + + + ++ V +WF + Y + E+L
Sbjct: 357 SAGRSHIV-----------CHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNA 400
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
protein, MCSG, structural GENO PSI-2, protein structure
initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Length = 481
Score = 28.4 bits (64), Expect = 8.8
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 194 PDIHS-------NAEISLSQAVLG-----GTIRIPGIYDD 221
DIHS +A L QA+ G I + G+Y++
Sbjct: 239 VDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGLYEE 278
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 28.2 bits (63), Expect = 9.3
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 268 KGQNVTNTEFKVKRIVIREQLKERGENELLSVQRKLSVKELMSRLRHNNSAV 319
+ N + +K + L+E L S + ++ +++L+ ++ +
Sbjct: 74 QVLNEKKQIYAIKYV----NLEEADNQTLDSYRNEI---AYLNKLQQHSDKI 118
>2zwi_A Alpha-/beta-galactoside alpha-2,3-sialyltransfera;
alpha-2,3-sialyltransfease, JT-ISH-467, photobacterium
phosp glycosyltransferase; HET: C5P; 2.01A
{Photobacterium phosphoreum}
Length = 373
Score = 28.3 bits (62), Expect = 9.6
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 9 AGNYGSANWNFHSTID-PEELFRNIFGQTGGFGGSQEGGFSEGFGFSQPQEIIMKLTFTQ 67
+ Y + H+ I+ ++ T GG FS P + K F +
Sbjct: 283 SATYNQQIIDAHNMIEIYNKIPFEALIMTD-ALPDAVGGMGSSVFFSLPNTVENKFIFYK 341
Query: 68 AARGVNKDVVLKIM 81
+ + + ++++M
Sbjct: 342 SDTDIENNALIQVM 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,960,451
Number of extensions: 613938
Number of successful extensions: 1502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 70
Length of query: 676
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 576
Effective length of database: 3,909,693
Effective search space: 2251983168
Effective search space used: 2251983168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.9 bits)