RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16387
(676 letters)
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein
DnaJ {Escherichia coli [TaxId: 562]}
Length = 79
Score = 70.1 bits (171), Expect = 1e-15
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 71 GVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSR 130
GV K++ + ++ C CHG +PGT+ Q C C+G+G + G F ++ TC +C+G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 131 NLIKNPCTTCDGKGQ 145
LIK+PC C G G+
Sbjct: 61 TLIKDPCNKCHGHGR 75
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella oneidensis
[TaxId: 70863]}
Length = 90
Score = 62.5 bits (151), Expect = 9e-13
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 81 MDTCTRCHG---EKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCKGSRNLI 133
C CH + + +C C+G E + ++ + C
Sbjct: 11 SGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQ 70
Query: 134 KNPCTTCDGKGQFAQ 148
K C +C G+ +
Sbjct: 71 KPTCESCHDDGRTSA 85
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), insert domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 59.3 bits (143), Expect = 7e-12
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 83 TCTRCHGEKCEPGTKAQKCHYCNGTGLETIST----GPFVMRSTCRYCKGSRNLI--KNP 136
C C G + G +KC CNG G++ ++ ++ C C G+ ++I K+
Sbjct: 4 LCKECEGRGGKKGAV-KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62
Query: 137 CTTCDGKG 144
C +C+GK
Sbjct: 63 CKSCNGKK 70
Score = 26.2 bits (57), Expect = 3.5
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 122 TCRYCKGS--RNLIKNPCTTCDGKGQFAQRQTI 152
C+ C+G + CT+C+G+G + +
Sbjct: 4 LCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM 36
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 46.1 bits (109), Expect = 3e-07
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 189 FERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQTVLFLEQGSVKLSSHQIMVK 242
F+RDG D+ AEI L A+ GG + + D + + G V + +++
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIE 55
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 41.1 bits (96), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 189 FERDGPDIHSNAEISLSQAVLGGTIRIPGIYDDQ 222
F+RDG D+ +S +++LG + I I
Sbjct: 2 FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRT 35
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 38.7 bits (90), Expect = 1e-04
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 126 CKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRM 168
G + K G + + I + + G + G +
Sbjct: 15 FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITY 54
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 32.2 bits (73), Expect = 0.17
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 337 SVIKSHFSSILDSVSPLMLDISATTRKAAVKLLSAMFSQV 376
S + S S+ S +P D++A A+K+L + ++
Sbjct: 297 SFVYSQMRSLSRSSNPEFRDVAAACS-VAIKMLGSKLDRL 335
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 31.9 bits (71), Expect = 0.28
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 463 RIKVLTRLRSMLLAIVHLFKTKSSSSNVSREIVVTSSTRHVPLYCSQQPGKSFIYDKKIT 522
+I+V RLR + + R + + V K +YD+
Sbjct: 1 KIRVYCRLRPLC---------EKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFD 51
Query: 523 SNETLDDVQNYTQMLMPLLMETFIEVVADRKQAGSD 558
N T DDV T+ L+ ++ + + Q GS
Sbjct: 52 GNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSG 87
>d1d4ca1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
putrefaciens [TaxId: 24]}
Length = 102
Score = 29.9 bits (66), Expect = 0.30
Identities = 17/97 (17%), Positives = 20/97 (20%), Gaps = 23/97 (23%)
Query: 81 MDTCTRCHGEKCEPGTKAQK------CHYCNGTGLETISTGPFVMRS----------TCR 124
M C CH T C C+G E + P S C
Sbjct: 12 MGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACT 71
Query: 125 YCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVE 161
C C C +P E
Sbjct: 72 SCHKGHEKSVAYCDAC-------HSFGFDMPFGGKWE 101
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 31.3 bits (68), Expect = 0.42
Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 11/89 (12%)
Query: 82 DTCTRCHGEKCEPGTKA-------QKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIK 134
C CH + + G K + CH + + F R+
Sbjct: 73 ANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPV 132
Query: 135 NP----CTTCDGKGQFAQRQTITVPVPAG 159
C C A ++ +
Sbjct: 133 GDPQKNCGACHHVYDEASKKLVWGKNKED 161
>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus
[TaxId: 873]}
Length = 103
Score = 28.6 bits (63), Expect = 0.86
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 61 MKLTFTQAARGVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCH 102
G + C CH ++ + +CH
Sbjct: 59 CSDCHALEQDGDTPGLQDAYHQQCWGCHEKQAKGPVMCGECH 100
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle
(Trachemys scripta) [TaxId: 34903]}
Length = 107
Score = 28.2 bits (63), Expect = 1.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 259 RKSYKTILPKGQNVTNTEFKVKRIVIRE 286
YK + QNVT E +V + VI+E
Sbjct: 67 VTEYKIDPNENQNVTQVEVRVMKQVIQE 94
>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
frigidimarina [TaxId: 56812]}
Length = 101
Score = 28.3 bits (62), Expect = 1.1
Identities = 13/70 (18%), Positives = 15/70 (21%), Gaps = 10/70 (14%)
Query: 71 GVNKDVVLKIMDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSR 130
D C CHGE E + N + C C
Sbjct: 22 IKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDI----------NCTSCHKGH 71
Query: 131 NLIKNPCTTC 140
K C C
Sbjct: 72 EEPKFYCNEC 81
>d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei
[TaxId: 4839]}
Length = 265
Score = 29.4 bits (65), Expect = 1.4
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 125 YCKGSRNLIKNPCTTCDGKGQFAQRQTITVPVPAGVEDGQTVRMNVGKSKKEIYITFR 182
YC+ C CD +T + + + G S+K IYI FR
Sbjct: 24 YCRTVIPGATWDCIHCDATEDLKIIKTWS-----TLIYDTNAMVARGDSEKTIYIVFR 76
>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 28.6 bits (62), Expect = 1.5
Identities = 7/66 (10%), Positives = 13/66 (19%), Gaps = 10/66 (15%)
Query: 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTC 140
+ A + +G + + T + NP T
Sbjct: 47 CAGGCSGPQDTD---CFACRHFNDSGACVPRCPQPLVYNKLTFQLE-------PNPHTKY 96
Query: 141 DGKGQF 146
G
Sbjct: 97 QYGGVC 102
>d1dyta_ d.5.1.1 (A:) Eosinophil cationic protein (ECP),
ribonuclease 3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 28.0 bits (62), Expect = 1.7
Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 19/81 (23%)
Query: 87 CHGEK--CEPGTKAQKCH---------YCNGTGLETISTGPFVMRSTCRYCKGSRNLIKN 135
C + C CH +C+ S CRY R +
Sbjct: 55 CGNQSIRCPHNRTLNNCHRSRFRVPLLHCDLI------NPGAQNISNCRY--ADRPGRRF 106
Query: 136 PCTTCDGKGQFAQRQTITVPV 156
CD + + VPV
Sbjct: 107 YVVACDNRDPRDSPRYPVVPV 127
>d1wada_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas [TaxId:
879]}
Length = 111
Score = 27.8 bits (61), Expect = 1.7
Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 8/83 (9%)
Query: 83 TCTRCHGEKCEPGTKAQKCHYC-NGTGLETISTGPFVMRSTCRYCKGSRNLIKNPCTTCD 141
C CH + + C N S S + ++ K C +C
Sbjct: 33 KCDDCHHDPGDKQYAGCTTDGCHNILDKADKSV-----NSWYKVVHDAKGGAKPTCISCH 87
Query: 142 GKGQFAQRQTITVPVPAGVEDGQ 164
++ G +
Sbjct: 88 KDKAGDDKE--LKKKLTGCKGSA 108
>d1hh5a_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Desulfuromonas acetoxidans [TaxId: 891]}
Length = 68
Score = 26.1 bits (57), Expect = 3.3
Identities = 9/22 (40%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 81 MDTCTRCHGEKCEPGTKAQKCH 102
D C CH P TK CH
Sbjct: 46 KDACKTCHKSNNGP-TKCGGCH 66
>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 293
Score = 28.0 bits (60), Expect = 3.9
Identities = 8/78 (10%), Positives = 12/78 (15%), Gaps = 16/78 (20%)
Query: 81 MDTCTRCHGEKCEPGTKAQKCHYCNGTGLETISTGP---FVMRSTCRYC----------- 126
E+ + AQ + L + C C
Sbjct: 197 HRRHLTSLMERIKDDKLAQ-AFHNKPEILCATCHHRSPLSLTPPKCGSCHTKEIDKANPG 255
Query: 127 -KGSRNLIKNPCTTCDGK 143
C C
Sbjct: 256 RPNLMAAYHLQCMGCHKG 273
>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 184
Score = 27.1 bits (60), Expect = 5.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 126 CKGSRNLIKNPC 137
K RNL++NPC
Sbjct: 8 SKRRRNLLRNPC 19
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 26.9 bits (58), Expect = 8.4
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 464 IKVLTRLRSMLLAIVHLFKTKSSSSNVSREIVVTSSTRHVPLYCSQQPGKSFIYDKKITS 523
I+V+ R R LA + S+ S V + V + + K++ +D +
Sbjct: 2 IQVVVRCRPFNLA----ERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 57
Query: 524 NETLDDVQNYTQM 536
+ DV
Sbjct: 58 STKQIDVYRSVVC 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,399,901
Number of extensions: 113871
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 29
Length of query: 676
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 585
Effective length of database: 1,158,166
Effective search space: 677527110
Effective search space used: 677527110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)