BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16393
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine
And Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In
Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open
Conformation In Complex With Fab
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 63
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 63
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium
And L- Tryptophan
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium
And L- Tryptophan
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
Length = 519
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And
Sodium
Length = 517
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 63
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 5 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 64
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And
Sodium
Length = 508
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +LA G +GL N RF + + + G F+I +II L+VGIPL ++G+
Sbjct: 4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 63
>pdb|4FC4|A Chain A, Fnt Family Ion Channel
pdb|4FC4|B Chain B, Fnt Family Ion Channel
pdb|4FC4|C Chain C, Fnt Family Ion Channel
pdb|4FC4|D Chain D, Fnt Family Ion Channel
pdb|4FC4|E Chain E, Fnt Family Ion Channel
pdb|4FC4|F Chain F, Fnt Family Ion Channel
pdb|4FC4|G Chain G, Fnt Family Ion Channel
pdb|4FC4|H Chain H, Fnt Family Ion Channel
pdb|4FC4|I Chain I, Fnt Family Ion Channel
pdb|4FC4|J Chain J, Fnt Family Ion Channel
Length = 261
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 7 SDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGL-----FNISRFAILSVQ 61
+D I KC + + + +PLGFW++ A G +GL F + SV+
Sbjct: 3 TDTINKCAANAARIARLSANNPLGFWVSS-----AMAGAYVGLGIILIFTLGNLLDPSVR 57
Query: 62 ---FGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAK-GCI---QMWIISP 104
G F I + L +I G LF H L K G I QMW I P
Sbjct: 58 PLVMGATFGIA-LTLVIIAGSELFTGHTMFLTLGVKAGTISHGQMWAILP 106
>pdb|1WCE|A Chain A, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|B Chain B, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|C Chain C, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|D Chain D, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|E Chain E, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|F Chain F, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|G Chain G, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|H Chain H, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|I Chain I, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|J Chain J, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|K Chain K, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|L Chain L, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|M Chain M, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 35 EFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLF 82
+FSS G TI LF+ + AI S+ G + + + L++G+ ++
Sbjct: 215 QFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGVTIY 262
>pdb|1WCD|J Chain J, Crystal Structure Of Ibdv T1 Virus-like Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 35 EFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLF 82
+FSS G TI LF+ + AI S+ G + + + L++G ++
Sbjct: 215 QFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIY 262
>pdb|3FBM|A Chain A, D431n Mutant Vp2 Protein Of Infectious Bursal Disease
Virus; Derived T1 Particles
Length = 452
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 35 EFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLF 82
+FSS G TI LF+ + AI S+ G + + + L++G ++
Sbjct: 215 QFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIY 262
>pdb|2GSY|A Chain A, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|B Chain B, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|C Chain C, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|D Chain D, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|E Chain E, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|F Chain F, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|G Chain G, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|H Chain H, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|I Chain I, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|J Chain J, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|K Chain K, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|L Chain L, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|M Chain M, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|N Chain N, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|O Chain O, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|P Chain P, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|Q Chain Q, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|R Chain R, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|S Chain S, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|T Chain T, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
Length = 456
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 35 EFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLF 82
+FSS G TI LF+ + AI S+ G + + + L++G ++
Sbjct: 215 QFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIY 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,249,494
Number of Sequences: 62578
Number of extensions: 103239
Number of successful extensions: 186
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 35
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)