Query psy16393
Match_columns 121
No_of_seqs 138 out of 1051
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3659|consensus 100.0 5E-34 1.1E-38 247.1 2.4 94 25-118 74-169 (629)
2 KOG3660|consensus 100.0 3.4E-33 7.4E-38 244.4 -1.9 92 26-117 31-124 (629)
3 PF00209 SNF: Sodium:neurotran 99.9 4.1E-30 8.9E-35 218.9 -3.9 90 29-118 1-92 (523)
4 COG0733 Na+-dependent transpor 99.9 3.2E-26 6.9E-31 193.6 3.8 88 28-115 4-95 (439)
5 PF01235 Na_Ala_symp: Sodium:a 65.2 8.6 0.00019 33.1 3.7 70 33-104 19-90 (416)
6 PF03596 Cad: Cadmium resistan 59.4 7.5 0.00016 30.1 2.2 79 38-116 99-181 (191)
7 COG4665 FcbT2 TRAP-type mannit 48.2 20 0.00043 27.8 2.8 36 65-100 100-136 (182)
8 TIGR00835 agcS amino acid carr 46.2 18 0.00039 31.2 2.6 60 33-94 47-107 (425)
9 COG1115 AlsT Na+/alanine sympo 37.7 24 0.00053 30.9 2.1 76 33-110 63-143 (452)
10 PRK09458 pspB phage shock prot 31.5 51 0.0011 22.1 2.5 23 66-88 6-28 (75)
11 TIGR00911 2A0308 L-type amino 30.9 98 0.0021 26.2 4.7 64 35-100 46-113 (501)
12 TIGR02976 phageshock_pspB phag 27.9 70 0.0015 21.2 2.7 22 66-87 6-27 (75)
13 TIGR00779 cad cadmium resistan 26.9 22 0.00048 27.7 0.1 78 39-116 100-181 (193)
14 PF06667 PspB: Phage shock pro 26.3 1E+02 0.0022 20.5 3.2 23 67-89 7-29 (75)
15 PF06547 DUF1117: Protein of u 20.2 44 0.00094 24.2 0.5 10 46-56 1-10 (117)
No 1
>KOG3659|consensus
Probab=99.98 E-value=5e-34 Score=247.09 Aligned_cols=94 Identities=30% Similarity=0.513 Sum_probs=89.1
Q ss_pred CCCCCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeee-ee
Q psy16393 25 LEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMW-II 102 (121)
Q Consensus 25 ~~~~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~-~~ 102 (121)
+.++|++|++|++|+||++|+||++||+|||||+|++|| |+|++||++++++.|+|++++|+++||+.|+|++++| |+
T Consensus 74 e~e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri 153 (629)
T KOG3659|consen 74 ELEQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRI 153 (629)
T ss_pred hhccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHh
Confidence 344599999999999999999999999999999999999 7999999999999999999999999999999999999 59
Q ss_pred ccCCceeeeeEEEeee
Q psy16393 103 SPVFKGEHEKRYQKAR 118 (121)
Q Consensus 103 ~p~~~GiG~a~~~~~~ 118 (121)
||.++||||++++.++
T Consensus 154 ~P~l~Gigy~i~~i~~ 169 (629)
T KOG3659|consen 154 APALKGIGYAICLIAF 169 (629)
T ss_pred CHHhcCCchhhhHHHH
Confidence 9999999999988664
No 2
>KOG3660|consensus
Probab=99.97 E-value=3.4e-33 Score=244.43 Aligned_cols=92 Identities=34% Similarity=0.690 Sum_probs=88.0
Q ss_pred CCCCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeeee-ec
Q psy16393 26 EHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWI-IS 103 (121)
Q Consensus 26 ~~~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~~-~~ 103 (121)
++.|++|+||+||++||+|++||+||+|||||+|++|| |+|+|||+++++++|+|++++|+++||++++|++.+|| ++
T Consensus 31 ~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~ 110 (629)
T KOG3660|consen 31 EPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRIC 110 (629)
T ss_pred ccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhC
Confidence 34799999999999999999999999999999999999 69999999999999999999999999999999999997 99
Q ss_pred cCCceeeeeEEEee
Q psy16393 104 PVFKGEHEKRYQKA 117 (121)
Q Consensus 104 p~~~GiG~a~~~~~ 117 (121)
|++||+|+++++.+
T Consensus 111 Pif~GvG~a~v~~~ 124 (629)
T KOG3660|consen 111 PIFKGVGWASVVIS 124 (629)
T ss_pred hHhcCccHHHHHHH
Confidence 99999999987654
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=99.95 E-value=4.1e-30 Score=218.90 Aligned_cols=90 Identities=34% Similarity=0.620 Sum_probs=79.5
Q ss_pred CCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeee-eeccCC
Q psy16393 29 LGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMW-IISPVF 106 (121)
Q Consensus 29 R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~-~~~p~~ 106 (121)
|++|+||.+|++||+|+++|+||+|||||+|++|| |+|++||+++++++|+|++++|+++||++++|++++| |++|.+
T Consensus 1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~ 80 (523)
T PF00209_consen 1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF 80 (523)
T ss_dssp ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999 7999999999999999999999999999999999999 599999
Q ss_pred ceeeeeEEEeee
Q psy16393 107 KGEHEKRYQKAR 118 (121)
Q Consensus 107 ~GiG~a~~~~~~ 118 (121)
||+|+++++.++
T Consensus 81 ~giG~~~~~~~~ 92 (523)
T PF00209_consen 81 KGIGYAMVLISF 92 (523)
T ss_dssp HTHHHH---HHH
T ss_pred cccccccccccc
Confidence 999999987654
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=99.92 E-value=3.2e-26 Score=193.62 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=82.5
Q ss_pred CCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeeee-ec--
Q psy16393 28 PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWI-IS-- 103 (121)
Q Consensus 28 ~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~~-~~-- 103 (121)
+|++|+||.+|+||++|+|||+||+|||||+.++|| |+|++||+++++++|+|++..|+++||++|++++++++ +.
T Consensus 4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~ 83 (439)
T COG0733 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK 83 (439)
T ss_pred cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence 799999999999999999999999999999999999 79999999999999999999999999999999999996 76
Q ss_pred cCCceeeeeEEE
Q psy16393 104 PVFKGEHEKRYQ 115 (121)
Q Consensus 104 p~~~GiG~a~~~ 115 (121)
+.++.+|+..++
T Consensus 84 ~~~~~~G~~gv~ 95 (439)
T COG0733 84 KKWEWIGWFGVL 95 (439)
T ss_pred ccchhhhhHHHH
Confidence 568888876543
No 5
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=65.24 E-value=8.6 Score=33.12 Aligned_cols=70 Identities=21% Similarity=0.223 Sum_probs=50.6
Q ss_pred cchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhccccc-ccceeeeeecc
Q psy16393 33 MNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLA-KGCIQMWIISP 104 (121)
Q Consensus 33 ~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~-~g~i~~~~~~p 104 (121)
=|.++-+.++++..||.|||--=.-=..--| |+ +-++-..-++|.+.=+.|..+||..| +..-+-|+=.|
T Consensus 19 iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGA--iFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 19 ISPFQALCTALAGTVGTGNIAGVATAIAIGGPGA--IFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred cChHHHHHHHHHhccCcchHHHHHHHHHhhchhH--HHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 4888999999999999999976644333334 55 34666777899999999999999766 33333444333
No 6
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=59.39 E-value=7.5 Score=30.08 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=44.4
Q ss_pred HHHHHhhhhccCcceeec-cccccccCceehhHHHHHHHHhhhhHHHHHHhhcccccccceeee-e-eccC-CceeeeeE
Q psy16393 38 SMLACFGTTIGLFNISRF-AILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMW-I-ISPV-FKGEHEKR 113 (121)
Q Consensus 38 fila~~G~avGLgNiWrF-Pyl~~~nGg~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~-~-~~p~-~~GiG~a~ 113 (121)
+-.+.+..|-|-.|+=-| |+....+-..+.+.-.++++.+++=.+......-+-.-+..++.| + +.|. +=|+|.-.
T Consensus 99 ~~Va~iTiAnGgDNigIYiP~Fa~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~l~p~v~I~LGi~I 178 (191)
T PF03596_consen 99 LTVAAITIANGGDNIGIYIPLFASLSLAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRWLVPIVYIGLGIYI 178 (191)
T ss_pred HHhhhhhhhcCCCeEEEeehhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhcccHHHHHHHHhCcee
Confidence 445556667789999888 988877666655555555555555333333222222222333444 2 4564 55777665
Q ss_pred EEe
Q psy16393 114 YQK 116 (121)
Q Consensus 114 ~~~ 116 (121)
++.
T Consensus 179 l~e 181 (191)
T PF03596_consen 179 LIE 181 (191)
T ss_pred eEe
Confidence 544
No 7
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.20 E-value=20 Score=27.81 Aligned_cols=36 Identities=22% Similarity=0.573 Sum_probs=29.2
Q ss_pred eehhHHHHHHHHhhhhHHHHHHhhcccccc-cceeee
Q psy16393 65 NFIIQFIILSLIVGIPLFAFHVSLGQLLAK-GCIQMW 100 (121)
Q Consensus 65 ~Fli~Y~i~l~~~giPl~~lE~alGq~~~~-g~i~~~ 100 (121)
-|++|+++.++..+.|...+-+.+|-.+.. |..-.|
T Consensus 100 fFLlPfc~l~iy~~~~~~~~S~~~GE~S~~~GGLp~w 136 (182)
T COG4665 100 FFLLPFCLLVIYLSWPYVALSWAIGETSNNPGGLPRW 136 (182)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHhcccCCCCCCCchh
Confidence 589999999999999999999999986543 333345
No 8
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=46.21 E-value=18 Score=31.23 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=48.4
Q ss_pred cchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccc
Q psy16393 33 MNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAK 94 (121)
Q Consensus 33 ~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~ 94 (121)
-|.++-+...++..||.|||--.|.-...-| |+ +-+.-...++|...-+.|..++|..|+
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGA--vFWMWI~allGm~~~~~e~~L~~~yr~ 107 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGGPGA--VFWMWVTAFIGMATKFVESTLAQKYRE 107 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 4788899999999999999999998843334 55 236667778899999999999998773
No 9
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=37.66 E-value=24 Score=30.90 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=54.0
Q ss_pred cchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhccccc-ccceeeeeeccCC---c
Q psy16393 33 MNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLA-KGCIQMWIISPVF---K 107 (121)
Q Consensus 33 ~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~-~g~i~~~~~~p~~---~ 107 (121)
-|.++-+..+++..||.|||---..=..--| |+=+..+ ..-++|.-.-+.|-.++|..| +..-+-++=.|.+ |
T Consensus 63 vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMW--i~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~k 140 (452)
T COG1115 63 VSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMW--IVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEK 140 (452)
T ss_pred cChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHH--HHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHh
Confidence 3689999999999999999987654444445 7755555 455678888999999999655 4445555545543 4
Q ss_pred eee
Q psy16393 108 GEH 110 (121)
Q Consensus 108 GiG 110 (121)
|+|
T Consensus 141 Gl~ 143 (452)
T COG1115 141 GLG 143 (452)
T ss_pred hcC
Confidence 554
No 10
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.46 E-value=51 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.4
Q ss_pred ehhHHHHHHHHhhhhHHHHHHhh
Q psy16393 66 FIIQFIILSLIVGIPLFAFHVSL 88 (121)
Q Consensus 66 Fli~Y~i~l~~~giPl~~lE~al 88 (121)
+.+|-++++++++-+.++++..=
T Consensus 6 l~~PliiF~ifVaPiWL~LHY~s 28 (75)
T PRK09458 6 LAIPLTIFVLFVAPIWLWLHYRS 28 (75)
T ss_pred HHHhHHHHHHHHHHHHHHHhhcc
Confidence 46799999999999999988654
No 11
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=30.92 E-value=98 Score=26.25 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=34.8
Q ss_pred hhHHHHHHhhhhccCcceeeccccccccCc---eehhHHHHHH-HHhhhhHHHHHHhhcccccccceeee
Q psy16393 35 EFSSMLACFGTTIGLFNISRFAILSVQFGV---NFIIQFIILS-LIVGIPLFAFHVSLGQLLAKGCIQMW 100 (121)
Q Consensus 35 k~~fila~~G~avGLgNiWrFPyl~~~nGg---~Fli~Y~i~l-~~~giPl~~lE~alGq~~~~g~i~~~ 100 (121)
..+.+.-.+|..+|.| +...|....+++| ..++.|++.. +....-+.+.|++- .+.+.|..-.|
T Consensus 46 ~~~~~~l~vg~iiGsG-if~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas-~~P~sGG~y~~ 113 (501)
T TIGR00911 46 LLSGVGIIVGTIIGSG-IFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGT-TIPKSGGEYNY 113 (501)
T ss_pred HhHhhHhheeceEEee-EeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCchhhh
Confidence 3444555556677765 6666766666653 2345554433 22333356667664 35566666556
No 12
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.91 E-value=70 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.5
Q ss_pred ehhHHHHHHHHhhhhHHHHHHh
Q psy16393 66 FIIQFIILSLIVGIPLFAFHVS 87 (121)
Q Consensus 66 Fli~Y~i~l~~~giPl~~lE~a 87 (121)
+++|-++++++++.+.+++++.
T Consensus 6 l~~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999998876
No 13
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=26.87 E-value=22 Score=27.69 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHhhhhccCcceeec-cccccccCceehhHHHHHHHHhhhhHHHHHHhhcccccccceeee-e-eccC-CceeeeeEE
Q psy16393 39 MLACFGTTIGLFNISRF-AILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMW-I-ISPV-FKGEHEKRY 114 (121)
Q Consensus 39 ila~~G~avGLgNiWrF-Pyl~~~nGg~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~-~-~~p~-~~GiG~a~~ 114 (121)
-.+.+..|.|=.|+=-| |+....+-..+.+.-.++++.+++=.+.......+-.=...++.| + +.|. +=|+|.-.+
T Consensus 100 ~Va~iTiAnGgDNIgIYvPlFa~~s~~~l~v~livF~ilv~vwc~~a~~l~~~p~I~~~leryg~~lvp~VlIgLGi~Il 179 (193)
T TIGR00779 100 TVAFITIASGADNIGIYVPYFVTLSMTNLLLTLIVFLIMVFFLCFTAYRLANFPGISETVEKYSRWIMPIVFIGLGIYII 179 (193)
T ss_pred EEEEEEEeccCceeEEEeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhCCeeeeeeEhhcCeeee
Confidence 34445667788999888 888776656655555566666665444332222222223334444 2 5664 567777665
Q ss_pred Ee
Q psy16393 115 QK 116 (121)
Q Consensus 115 ~~ 116 (121)
+.
T Consensus 180 ~e 181 (193)
T TIGR00779 180 IE 181 (193)
T ss_pred Ee
Confidence 54
No 14
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.26 E-value=1e+02 Score=20.50 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhhhhHHHHHHhhc
Q psy16393 67 IIQFIILSLIVGIPLFAFHVSLG 89 (121)
Q Consensus 67 li~Y~i~l~~~giPl~~lE~alG 89 (121)
++|-++++++++.+.++++.-=-
T Consensus 7 ~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999888887643
No 15
>PF06547 DUF1117: Protein of unknown function (DUF1117); InterPro: IPR010543 This entry represents the C terminus of a number of hypothetical plant proteins.
Probab=20.18 E-value=44 Score=24.16 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=7.8
Q ss_pred hccCcceeecc
Q psy16393 46 TIGLFNISRFA 56 (121)
Q Consensus 46 avGLgNiWrFP 56 (121)
+|||. |||.|
T Consensus 1 avGLT-IWRLP 10 (117)
T PF06547_consen 1 AVGLT-IWRLP 10 (117)
T ss_pred CcceE-EEEcC
Confidence 46765 99999
Done!